BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021839
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74476|RF2_SYNY3 Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=prfB PE=3 SV=2
Length = 372
Score = 231 bits (588), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 129/152 (84%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+G EVMPLL EE++ + IP++DL+IS SRAGGKGGQNVNKVETAVRI H+PTG+ V
Sbjct: 215 QTSFAGVEVMPLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAV 274
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
RCT+ERSQL NK KAL+ LKAKLL++ EEQRA I +IRGD V+A WG QIRNYVFHPY+
Sbjct: 275 RCTQERSQLQNKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVEAAWGTQIRNYVFHPYQ 334
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 295
LVKD+RT ET+D+ VMDGEL FI++YL++
Sbjct: 335 LVKDLRTNVETTDVGGVMDGELSDFIEAYLRH 366
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
Query: 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTD 62
+ +L++++E S R+ + + L L+ ++ +LE AA FWD+ +AQ+ LQ L +
Sbjct: 4 ELTDLKRNLELISSRLGQTQDYLDLPGLKAKVQDLEQCAAQPDFWDDTDQAQQILQTLNE 63
Query: 63 VKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLS 122
K ++ ++ + D+ IV+L E D D LL EA + +++L K LD++EL QLLS
Sbjct: 64 TKSQLEQWGIWQQQWQDSQAIVELLELED--DQALLTEAETTLEQLQKELDRWELQQLLS 121
Query: 123 GPYDKEGAVISITAGAGGTDAQ 144
GPYD +GA ++I AGAGGTDAQ
Sbjct: 122 GPYDAKGATLTINAGAGGTDAQ 143
>sp|Q7U3W6|RF2_SYNPX Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102)
GN=prfB PE=3 SV=1
Length = 374
Score = 224 bits (570), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/151 (68%), Positives = 128/151 (84%), Gaps = 1/151 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+G EVMP + EE +D+ IPE+DLE++ SR+GG GGQNVNKVETAVRI HIPTG+ V
Sbjct: 213 QTSFAGIEVMPKIDEE-VDIDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
RCT+ERSQL NK KA++ LKAKLLVIA+EQRA+EI IRGD V+A WG QIRNYVFHPY+
Sbjct: 272 RCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQ 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
+VKD+RT ET+D+ +VMDG L+PFI + L+
Sbjct: 332 MVKDLRTSEETNDVQAVMDGALDPFIDASLR 362
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTD 62
D + ++D+ +DR+ + + L+ +LE AA FWD++ AQ+ ++ L +
Sbjct: 2 DLTDFKRDLSELTDRLGHAQDCLDVPALKARQQDLEQLAAQPDFWDDQQAAQKQMRRLDE 61
Query: 63 VKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLS 122
VK ++ L D+ +DDA ++L E D +L EA + +L + LD++EL +LLS
Sbjct: 62 VKAQLQQLADWGGAVDDAKATLELYEL--EPDEEMLTEAQEGLNQLRQGLDRWELERLLS 119
Query: 123 GPYDKEGAVISITAGAGGTDAQ 144
G YDKEGAV++I AGAGGTDAQ
Sbjct: 120 GDYDKEGAVLTINAGAGGTDAQ 141
>sp|B7K0A6|RF2_CYAP8 Peptide chain release factor 2 OS=Cyanothece sp. (strain PCC 8801)
GN=prfB PE=3 SV=1
Length = 365
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 135/276 (48%), Positives = 179/276 (64%), Gaps = 14/276 (5%)
Query: 23 ASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQAL---TDVKDKINLLTDFKTKMDD 79
A A L QL EL E++ S +D++ A T+ A TD +D +L T+ +
Sbjct: 98 AEANLTQLNHELDRWELQRLLSGIYDSKG-AVLTINAGAGGTDAQDWAEMLLRMYTRWGE 156
Query: 80 AVTI-VKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGA 138
V LTE + +AG+ ++A++ E A L G ++ I+
Sbjct: 157 QQGYKVHLTEISEGDEAGI--KSATLEIEGRYAYG------YLKGEKGTH-RLVRISPFN 207
Query: 139 GGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIP 198
QTSF+G EVMP L EE + V+IPE+DLEI+ +R+GGKGGQNVNKVETAVR+ H+P
Sbjct: 208 ANGKRQTSFAGIEVMPALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLP 267
Query: 199 TGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYV 258
TG+ VRCT+ERSQL NK KAL+ LKAKLL+IA+EQRA I +IRGD V+A WG QIRNYV
Sbjct: 268 TGIAVRCTQERSQLQNKEKALALLKAKLLIIAQEQRAQAIAEIRGDMVEAAWGNQIRNYV 327
Query: 259 FHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
FHPY++VKDVRT ET+D+ VMDG+L+ FI+SYL+
Sbjct: 328 FHPYQMVKDVRTNTETTDVNGVMDGKLDLFIESYLR 363
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
L+++++ + R+ + + L L + +LE AA FWDN+ AQ+TLQ L D+K
Sbjct: 6 LKREIQQIAARLGKTQDYLDLPALNANIQDLEQIAAQPDFWDNQETAQKTLQQLNDLKSS 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ + +++D I +L E + DA L EEA + + +LN LD++EL +LLSG YD
Sbjct: 66 VEEYHQWMGQLEDLKAIAELLELEE--DATLNEEAEANLTQLNHELDRWELQRLLSGIYD 123
Query: 127 KEGAVISITAGAGGTDAQ 144
+GAV++I AGAGGTDAQ
Sbjct: 124 SKGAVLTINAGAGGTDAQ 141
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5)
GN=prfB PE=3 SV=1
Length = 373
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 185/359 (51%), Gaps = 70/359 (19%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
L+ VE R+E+++ ++LE EL EL+ K ++ +FW+++ +A++ +Q V++
Sbjct: 6 LKGKVEELRKRLEDVKKILSPEKLESELKELDQKMSEPNFWEDQEKAKQVIQRRKWVEET 65
Query: 67 INLLTDFKTKMDDAVTIVK--------------------------------LTEEMDSTD 94
+N L + + + D +V+ L+ EMD+ +
Sbjct: 66 LNKLKNLEKSVKDLEELVEITSEEDTETWAMMDEEIKEVERTLRELELKTYLSGEMDAKN 125
Query: 95 AGLLEEAASIIKELNKALDQF-----------------------------ELTQLLSGPY 125
A L +A + E D +T L+ GPY
Sbjct: 126 AYLTIQAGAGGTEACDWADMLFRMYKRWAEKKGYEVELIDITPDDVAGIKSVTVLVKGPY 185
Query: 126 ------DKEGA--VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRA 177
++G ++ I+ TSF+ VMP + +E + ++I EDL+I RA
Sbjct: 186 AYGYLKGEQGVHRLVRISPFDANARRHTSFAAVSVMPQI-DEDIKIEIKPEDLKIETFRA 244
Query: 178 GGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASE 237
G GGQ VNK +TAVRITHIPTG+TV C +ERSQ NK KAL LKAKL + ++ +
Sbjct: 245 SGAGGQYVNKTDTAVRITHIPTGITVSCQQERSQYQNKRKALELLKAKLYQLEMKKLEEK 304
Query: 238 IKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
KQ G+ WG QIR+YVFHPYKL+KD+RTG+ET ++ +VMDGE++ FI+SYLK+K
Sbjct: 305 KKQYEGEKTDIGWGHQIRSYVFHPYKLIKDLRTGYETGNVEAVMDGEIDEFIESYLKWK 363
>sp|B2V5M0|RF2_SULSY Peptide chain release factor 2 OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=prfB PE=3 SV=1
Length = 369
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 179/339 (52%), Gaps = 71/339 (20%)
Query: 28 QQLEKELAELEMKAADSSFWDNRAEAQET----------LQALTDVKDKINLLTDFKT-- 75
++LE+E+ +L+ AD +FW++ +AQE L+ + V K+N L D+ T
Sbjct: 27 EKLEEEIKQLDDLMADPNFWNDTKKAQEISSRRNYLGEKLEEILTVDKKVNNLLDYITLL 86
Query: 76 KMDDAVTIVK---------------------LTEEMDSTDAGLLEEAAS----------- 103
+M++ + L++EMDS +A L +A S
Sbjct: 87 EMEEDQELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNAILTVQAGSGGVEACDWTEM 146
Query: 104 ----IIKELNKALDQFEL--------------TQLLSGPY------DKEGA--VISITAG 137
+ K Q EL T ++ GPY ++G ++ I+
Sbjct: 147 LLRMYTRWAEKRGYQVELVDFQPDDVAGVKSATLIIKGPYAYGYLKGEQGVHRLVRISPF 206
Query: 138 AGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHI 197
TSFS V+P + +E + V+I EEDL I RA G GGQ+VNK ++AVRITHI
Sbjct: 207 DANKRRHTSFSAVSVIPEI-DEDIKVEINEEDLRIDTYRASGAGGQHVNKTDSAVRITHI 265
Query: 198 PTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNY 257
PTG+ V C ERSQL NK+KA + LKAKL + E+R + K++ G+ WG QIR+Y
Sbjct: 266 PTGIVVACQSERSQLQNKLKATNMLKAKLYQLELEKRKEKQKELEGEKKDITWGSQIRSY 325
Query: 258 VFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
VF PY++VKD+RTG ET +I +VMDGE++ FI+SYLK+K
Sbjct: 326 VFQPYQMVKDLRTGFETGNIEAVMDGEIDDFIESYLKWK 364
>sp|Q9CGX1|RF2_LACLA Peptide chain release factor 2 OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=prfB PE=3 SV=1
Length = 365
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ +VMP L ++S++V + + D+++ R+GG GGQNVNKV T VR+THIPTG+ V
Sbjct: 213 HTSFTSVDVMPEL-DDSIEVDVRDADVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
+ T +R+Q N+ KA++ LK+KL + +++ +E+ ++RGD + WG QIR+YVF PY+
Sbjct: 272 QSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQSEISWGSQIRSYVFMPYQ 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
LVKD RTG+ET I +VMDGEL+ FI +YL++
Sbjct: 332 LVKDTRTGYETGQISNVMDGELDGFINAYLRWN 364
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R +E ++++ R S L++LE+E+A LE A FW+++A AQ+ + +K K
Sbjct: 6 IRNLLEGYAEKINGFRESLDLERLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAK 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ +++A T++++ +E D + E + L + ++ +EL +L+ PYD
Sbjct: 66 YDNYQAMNNMLEEAQTMLEMLQE--EADEEMQAELEEMTIALGQKIESYELEIMLNQPYD 123
Query: 127 KEGAVISITAGAGGTDAQ 144
AV+ I G+GGT++Q
Sbjct: 124 HMNAVLEIHPGSGGTESQ 141
>sp|A2RLF5|RF2_LACLM Peptide chain release factor 2 OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=prfB PE=3 SV=1
Length = 365
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ +VMP L ++S++V++ + D+++ R+GG GGQNVNKV T VR+TH+PTG+ V
Sbjct: 213 HTSFTSVDVMPEL-DDSIEVEVRDADVKMDTFRSGGAGGQNVNKVSTGVRLTHVPTGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
+ T +R+Q N+ KA++ LK+KL + +++ +E+ ++RGD + WG QIR+YVF PY+
Sbjct: 272 QSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQSEISWGSQIRSYVFMPYQ 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
LVKD RTG+ET I +VMDGE++ FI +YL++
Sbjct: 332 LVKDTRTGYETGQISNVMDGEIDGFINAYLRWN 364
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R +E S+++ R S L +LE+E+A LE A FW+++A AQ+ + +K K
Sbjct: 6 IRNLLEGYSEKINGFRDSLDLDRLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAK 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ T +++A T++++ +E D + E + L + ++ +EL +L+ PYD
Sbjct: 66 YDNYQAMNTMLEEAQTMLEMLQE--EADEDMQVELEEMTTALGQKIESYELEIMLNQPYD 123
Query: 127 KEGAVISITAGAGGTDAQ 144
AV+ I G+GGT++Q
Sbjct: 124 HMNAVLEIHPGSGGTESQ 141
>sp|Q02ZM8|RF2_LACLS Peptide chain release factor 2 OS=Lactococcus lactis subsp.
cremoris (strain SK11) GN=prfB PE=3 SV=1
Length = 365
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ +VMP L ++S++V++ + D+++ R+GG GGQNVNKV T VR+TH+PTG+ V
Sbjct: 213 HTSFTSVDVMPEL-DDSIEVEVRDADVKMDTFRSGGAGGQNVNKVSTGVRLTHVPTGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
+ T +R+Q N+ KA++ LK+KL + +++ +E+ ++RGD + WG QIR+YVF PY+
Sbjct: 272 QSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQSEISWGSQIRSYVFMPYQ 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
LVKD RTG+ET I +VMDGE++ FI +YL++
Sbjct: 332 LVKDTRTGYETGQISNVMDGEIDGFINAYLRWN 364
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R +E S+++ R S L +LE+E+A LE A FW+++A AQ+ + +K K
Sbjct: 6 IRNLLEGYSEKINGFRDSLDLDRLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAK 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ +++A T++++ +E D + E + L + ++ +EL +L+ PYD
Sbjct: 66 YDNYQAMNNMLEEAQTMLEMLQE--EADEDMQVELEEMTTALGQKIESYELEIMLNQPYD 123
Query: 127 KEGAVISITAGAGGTDAQ 144
AV+ I G+GGT++Q
Sbjct: 124 HMNAVLEIHPGSGGTESQ 141
>sp|O83585|RF2_TREPA Peptide chain release factor 2 OS=Treponema pallidum (strain
Nichols) GN=prfB PE=3 SV=1
Length = 368
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 159/336 (47%), Gaps = 74/336 (22%)
Query: 31 EKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEM 90
E +A LE AA FW RA A+ L L ++ + + + D + +L E
Sbjct: 25 EARIATLEAAAAAPDFWSERARAEALLAELKTLRATLEPWRALRRESADLRALYELARE- 83
Query: 91 DSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDK----------------------- 127
+ DA L E +S+ +++ ++ LT+LL D+
Sbjct: 84 -AQDASLEPELSSLFSDISARFEEASLTRLLHEEVDRLDAFVTIHSGAGGVEACDWAQML 142
Query: 128 -----------------------EGAVISITAGAGGTDA--------------------- 143
EG V S+T G+ A
Sbjct: 143 MRMYTRWAERRSFCVHIVDLLESEGGVKSVTLKICGSHAFGFLKGETGVHRLVRISPFDS 202
Query: 144 ----QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPT 199
TSF+ V P+L ++ ++V I ED+ + R+GG GGQ+VNK ++AVRITH+PT
Sbjct: 203 AARRHTSFTSTYVFPVL-DDHVEVHIRSEDMRVDTYRSGGAGGQHVNKTDSAVRITHLPT 261
Query: 200 GVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVF 259
G+ V C ERSQ++N+ ALS L+A+L +++ E ++ + WG QIR+YVF
Sbjct: 262 GIVVTCQNERSQISNRATALSLLRARLYAYERQKKQQEHQRFASEKKDISWGNQIRSYVF 321
Query: 260 HPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 295
HPY +VKD R+ ET +I +VMDG LEPFI+SYL++
Sbjct: 322 HPYTMVKDHRSKCETGNIHAVMDGALEPFIRSYLEF 357
>sp|A8AY61|RF2_STRGC Peptide chain release factor 2 OS=Streptococcus gordonii (strain
Challis / ATCC 35105 / CH1 / DL1 / V288) GN=prfB PE=3
SV=1
Length = 364
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ EVMP L +++++V+I E+D+++ R+GG GGQNVNKV T VR+THIPTG+ V
Sbjct: 211 HTSFTSVEVMPEL-DDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVV 269
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
+ T +R+Q N+ +A+ L+AKL + +E++A+E+ ++GD + WG QIR+YVF PY
Sbjct: 270 QSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAAEVDSLKGDKKEISWGSQIRSYVFTPYT 329
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
+VKD RT +E + + VMDG+L+ FI +YLK++
Sbjct: 330 MVKDHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 362
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTD 62
D +R+ ++A +++ R S L+ LE+E+A LE K + FWD+ AQ+T Q L +
Sbjct: 2 DISEIRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWDDNIAAQKTSQELNE 61
Query: 63 VKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLS 122
+K D++ ++ E DS E + EL K + +E+T LLS
Sbjct: 62 LKQTYENFHQMTDLFDESEILLDFLAEDDSVQE----ELEEKLAELEKMMTSYEMTLLLS 117
Query: 123 GPYDKEGAVISITAGAGGTDAQ 144
PYD A++ I G+GGT+AQ
Sbjct: 118 EPYDNNNAILEIHPGSGGTEAQ 139
>sp|Q04GC3|RF2_OENOB Peptide chain release factor 2 OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=prfB PE=3 SV=1
Length = 372
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 107/155 (69%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF +VMP L ++ ++++I +D+++ R+GG GGQNVNKV TAVR+THIPTG+ V
Sbjct: 213 HTSFVSIDVMPELDDDEIEIEIKPQDVKMDVYRSGGAGGQNVNKVSTAVRLTHIPTGIVV 272
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
ER+Q N+ A+ LKAKL E++R E ++ G + WG QIR+YVF PY+
Sbjct: 273 ASQVERTQYGNRDIAMKMLKAKLYEQEEQKREEEHAKLSGTKLDVAWGSQIRSYVFQPYR 332
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYS 298
+VKD+R+G+ET D VMDG L+PFI +YLK+K S
Sbjct: 333 MVKDLRSGYETGDTDGVMDGNLDPFINAYLKWKLS 367
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 8 RKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKI 67
R + ++++ R++ L L+ +AE E K + FWD++ AQ+ + +K++
Sbjct: 7 RNSISDMQEQIDGFRSTLDLDALDASIAENEDKMSQPGFWDDQQSAQKIIDETNTLKNRR 66
Query: 68 NLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDK 127
+ + ++D + +L E D DA + E + I++ K L+++ L QLL+ YD
Sbjct: 67 DSFLSLQKSVEDLTAMAELLSEED--DADMHAELDTDIEKTEKDLEKYNLNQLLTEKYDS 124
Query: 128 EGAVISITAGAGGTDA 143
A++ I G GGT++
Sbjct: 125 NNAILEIHPGEGGTES 140
>sp|Q0TNE1|RF2_CLOP1 Peptide chain release factor 2 OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2
Length = 362
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+ EV+P L + D++I DL I RAGG GGQ+VNK E+AVRITHIPTG+ V
Sbjct: 212 QTSFASVEVLPELTSDQ-DIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVV 270
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
+C ERSQ +N+ A+ LK+KL+ + E +I+ + G+ WG QIR+YVFHPY
Sbjct: 271 QCQNERSQFSNRDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYS 330
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYL 293
+VKD RT ETS++ VMDG+++ FI +YL
Sbjct: 331 MVKDHRTNVETSNVNGVMDGDIDNFIIAYL 360
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 16 DRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKT 75
+ ++E+ AS L LEK+ AELE+K ++ FWD+ +AQE Q VKDKI+ +
Sbjct: 15 NNLKEMGASLCLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNE 74
Query: 76 KMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISIT 135
++DD + +L EE D A +E S +K L+K +D ++ +LSG YD+ A++++
Sbjct: 75 RIDDVEVLKELMEENDEETA---KEIISEVKALSKEIDTLKIETILSGEYDRNDAILTLH 131
Query: 136 AGAGGTDAQ 144
G GG+DA
Sbjct: 132 TGVGGSDAN 140
>sp|Q2MGI2|RF2_STRPN Peptide chain release factor 2 OS=Streptococcus pneumoniae serotype
4 (strain ATCC BAA-334 / TIGR4) GN=prfB PE=3 SV=1
Length = 364
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ EVMP L +++++V+I E+D+++ R+GG GGQNVNKV T VR+THIPTG+ V
Sbjct: 211 HTSFTSVEVMPEL-DDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVV 269
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
+ T +R+Q N+ +A+ L+AKL + ++++A+E+ ++G+ + WG QIR+YVF PY
Sbjct: 270 QSTVDRTQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWGSQIRSYVFTPYT 329
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYS 298
+VKD RT E + + VMDG+L+ FI +YLK++ S
Sbjct: 330 MVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWRIS 364
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R+ ++A +++ R S L+ LE+E+A LE K + FW++ AQ+T Q L ++K+
Sbjct: 6 IRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWNDNIAAQKTSQELNELKNT 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
N + D+ ++ E D + +E + + EL+K + +E+T LLS PYD
Sbjct: 66 YNTFHKMEELQDEVEILLDFLAE----DESVHDELVAQLAELDKIMTSYEMTLLLSEPYD 121
Query: 127 KEGAVISITAGAGGTDAQ 144
A++ I G+GGT+AQ
Sbjct: 122 HNNAILEIHPGSGGTEAQ 139
>sp|Q49VV3|RF2_STAS1 Peptide chain release factor 2 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=prfB PE=3 SV=2
Length = 373
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 172/358 (48%), Gaps = 70/358 (19%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
++++++ ++++E++R S L+ E + E E D +FWDN+ +AQ+ + +K
Sbjct: 6 IKRNIDTYNEKLEQLRGSLDLEAKETNIQEYEEMMTDPTFWDNQEKAQDVIDKNNALKSV 65
Query: 67 INL-------LTDFKT-------------KMDDAVTIVKLTEEMDSTDAGLL----EEAA 102
+N L D T K D ++ E+D + LL +A
Sbjct: 66 VNAYRTLESELEDMDTTRALLLEEDDETMKQDLEQSVQDFKNELDQFELQLLLDGPYDAN 125
Query: 103 SIIKELNKALDQFE---LTQLLSGPYDK------------------EGAVISITAGAGGT 141
+ I EL+ E T +L Y + E V S+T G
Sbjct: 126 NAIMELHPGAGGTESQDWTNMLLRMYQRYCEQKGFNVEIADYLPGDEAGVKSVTLIVKGH 185
Query: 142 DA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSR 176
+A TSF+ +V+P +++ I +D+ + R
Sbjct: 186 NAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPQFNNTEIEIDINPDDITVDTFR 245
Query: 177 AGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRAS 236
A G GGQ++NK E+A+RITH PTG+ V ERSQ+ N+ A+ LK+KL + E++
Sbjct: 246 ASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIKNREAAMKTLKSKLYQLKIEEQEQ 305
Query: 237 EIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E+ +IRG+ + WG QIR+YVFHPY +VKD RT ET + +VMDG++ PFI+++L+
Sbjct: 306 EMAEIRGEQKEIGWGSQIRSYVFHPYAMVKDHRTNEETGKVDAVMDGDIGPFIEAFLR 363
>sp|Q4L4H9|RF2_STAHJ Peptide chain release factor 2 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=prfB PE=3 SV=2
Length = 371
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 106/157 (67%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ +V+P + ++++I +D+ + RA G GGQ++NK E+A+RITH PTG+ V
Sbjct: 213 HTSFASCDVIPEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 272
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
ERSQ+ N+ A+ LKAKL + E++ E+ +IRG+ + WG QIR+YVFHPY
Sbjct: 273 NNQNERSQIKNREAAMKMLKAKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYS 332
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMS 300
+VKD RT ET + +VMDGE+ PFI+SYL+Y + S
Sbjct: 333 MVKDHRTNEETGKVDAVMDGEIGPFIESYLRYTMNQS 369
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
++++++ + + +IR S + E + E E + FWD++ +AQ+ + +K
Sbjct: 6 IKRNIDEYRNNLAQIRGSLDFENKETNIQEYEEMMTEPDFWDDQNKAQDVIDKNNALKSV 65
Query: 67 INLLTDFKTKMDD-AVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPY 125
+N + + +++D T L EE+D LE+ KE +DQFEL LL GP+
Sbjct: 66 VNGYHELEEEVEDMTATWELLQEELDGDVKSDLEQNVLDFKE---KVDQFELQLLLDGPH 122
Query: 126 DKEGAVISITAGAGGTDAQ 144
D A++ + GAGGT++Q
Sbjct: 123 DANNAILELHPGAGGTESQ 141
>sp|Q6GIN7|RF2_STAAR Peptide chain release factor 2 OS=Staphylococcus aureus (strain
MRSA252) GN=prfB PE=3 SV=1
Length = 369
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 72/359 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQE----------- 55
++++++ + + +IR S L+ E + E E A+ +FWDN+ +AQ+
Sbjct: 6 IKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAI 65
Query: 56 -----TLQALTDVKDKI-NLL----------------TDFKTKMDDAVTIVKLTEEMDST 93
TLQA D D +LL +FK K+D+ + L D+
Sbjct: 66 VNGYKTLQAEVDDMDATWDLLQEEFDGEMKEDLEQEVINFKAKVDEYELQLLLDGPHDAN 125
Query: 94 DAGL-LEEAASIIKELNKALDQFELTQLLSG------------PYDKEGAVISITAGAGG 140
+A L L A + + A F + Q P D E + S+T G
Sbjct: 126 NAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVKTVDYLPGD-EAGIKSVTLLIKG 184
Query: 141 TDA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFS 175
+A TSF+ +V+P + ++++I +D+ +
Sbjct: 185 HNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTF 244
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
RA G GGQ++NK E+A+RITH P+G+ V ERSQ+ N+ A+ LK+KL + E++A
Sbjct: 245 RASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQA 304
Query: 236 SEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E+ +IRG+ + WG QIR+YVFHPY +VKD RT ET + +VMDG++ PFI+SYL+
Sbjct: 305 REMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLR 363
>sp|B9DRN6|RF2_STRU0 Peptide chain release factor 2 OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=prfB PE=3 SV=1
Length = 366
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ EVMP L +++++V I ++D+++ R+GG GGQNVNKV T VR+THIPTG+ V
Sbjct: 211 HTSFTSVEVMPEL-DDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVV 269
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
T +R+Q N+ +A+ L+AKL + +E++A E+ ++GD + WG QIR+YVF PY
Sbjct: 270 ASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYT 329
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
+VKD RT E + + VMDGE++ FI +YLK++
Sbjct: 330 MVKDHRTNFEVAQVDKVMDGEIDGFIDAYLKWR 362
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R+ + +++ R S L LE+E+A LE K + FW++ AQ+T Q L +K
Sbjct: 6 IRQKIVENKEKLTSFRRSLDLDGLEEEIALLENKMTEPDFWNDNIAAQKTSQELNTLKST 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
D D+ +L EM + D + EE + +L + L Q+E+T LLS PYD
Sbjct: 66 FETFHDMLELSDET----ELYLEMLAEDESIKEELEEALVKLEQILSQYEMTLLLSEPYD 121
Query: 127 KEGAVISITAGAGGTDAQ 144
A++ I G+GGT+AQ
Sbjct: 122 HNNAILEIHPGSGGTEAQ 139
>sp|Q6GB76|RF2_STAAS Peptide chain release factor 2 OS=Staphylococcus aureus (strain
MSSA476) GN=prfB PE=3 SV=1
Length = 369
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 72/359 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQE----------- 55
++++++ + + +IR S L+ E + E E A+ +FWDN+ +AQ+
Sbjct: 6 IKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAI 65
Query: 56 -----TLQALTDVKDKI-NLL----------------TDFKTKMDDAVTIVKLTEEMDST 93
TLQA D D +LL +FK K+D+ + L D+
Sbjct: 66 VNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDAN 125
Query: 94 DAGL-LEEAASIIKELNKALDQFELTQLLSG------------PYDKEGAVISITAGAGG 140
+A L L A + + A F + Q P D E + S+T G
Sbjct: 126 NAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGD-EAGIKSVTLLIKG 184
Query: 141 TDA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFS 175
+A TSF+ +V+P + ++++I +D+ +
Sbjct: 185 HNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTF 244
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
RA G GGQ++NK E+A+RITH P+G+ V ERSQ+ N+ A+ LK+KL + E++A
Sbjct: 245 RASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQA 304
Query: 236 SEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E+ +IRG+ + WG QIR+YVFHPY +VKD RT ET + +VMDG++ PFI+SYL+
Sbjct: 305 REMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLR 363
>sp|Q7A6R4|RF2_STAAN Peptide chain release factor 2 OS=Staphylococcus aureus (strain
N315) GN=prfB PE=1 SV=2
Length = 369
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 72/359 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQE----------- 55
++++++ + + +IR S L+ E + E E A+ +FWDN+ +AQ+
Sbjct: 6 IKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAI 65
Query: 56 -----TLQALTDVKDKI-NLL----------------TDFKTKMDDAVTIVKLTEEMDST 93
TLQA D D +LL +FK K+D+ + L D+
Sbjct: 66 VNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDAN 125
Query: 94 DAGL-LEEAASIIKELNKALDQFELTQLLSG------------PYDKEGAVISITAGAGG 140
+A L L A + + A F + Q P D E + S+T G
Sbjct: 126 NAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGD-EAGIKSVTLLIKG 184
Query: 141 TDA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFS 175
+A TSF+ +V+P + ++++I +D+ +
Sbjct: 185 HNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTF 244
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
RA G GGQ++NK E+A+RITH P+G+ V ERSQ+ N+ A+ LK+KL + E++A
Sbjct: 245 RASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQA 304
Query: 236 SEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E+ +IRG+ + WG QIR+YVFHPY +VKD RT ET + +VMDG++ PFI+SYL+
Sbjct: 305 REMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLR 363
>sp|Q99VM1|RF2_STAAM Peptide chain release factor 2 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=prfB PE=1 SV=2
Length = 369
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 72/359 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQE----------- 55
++++++ + + +IR S L+ E + E E A+ +FWDN+ +AQ+
Sbjct: 6 IKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAI 65
Query: 56 -----TLQALTDVKDKI-NLL----------------TDFKTKMDDAVTIVKLTEEMDST 93
TLQA D D +LL +FK K+D+ + L D+
Sbjct: 66 VNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDAN 125
Query: 94 DAGL-LEEAASIIKELNKALDQFELTQLLSG------------PYDKEGAVISITAGAGG 140
+A L L A + + A F + Q P D E + S+T G
Sbjct: 126 NAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGD-EAGIKSVTLLIKG 184
Query: 141 TDA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFS 175
+A TSF+ +V+P + ++++I +D+ +
Sbjct: 185 HNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTF 244
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
RA G GGQ++NK E+A+RITH P+G+ V ERSQ+ N+ A+ LK+KL + E++A
Sbjct: 245 RASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQA 304
Query: 236 SEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E+ +IRG+ + WG QIR+YVFHPY +VKD RT ET + +VMDG++ PFI+SYL+
Sbjct: 305 REMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLR 363
>sp|Q5HHR5|RF2_STAAC Peptide chain release factor 2 OS=Staphylococcus aureus (strain
COL) GN=prfB PE=3 SV=1
Length = 369
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 72/359 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQE----------- 55
++++++ + + +IR S L+ E + E E A+ +FWDN+ +AQ+
Sbjct: 6 IKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAI 65
Query: 56 -----TLQALTDVKDKI-NLL----------------TDFKTKMDDAVTIVKLTEEMDST 93
TLQA D D +LL +FK K+D+ + L D+
Sbjct: 66 VNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDAN 125
Query: 94 DAGL-LEEAASIIKELNKALDQFELTQLLSG------------PYDKEGAVISITAGAGG 140
+A L L A + + A F + Q P D E + S+T G
Sbjct: 126 NAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGD-EAGIKSVTLLIKG 184
Query: 141 TDA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFS 175
+A TSF+ +V+P + ++++I +D+ +
Sbjct: 185 HNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTF 244
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
RA G GGQ++NK E+A+RITH P+G+ V ERSQ+ N+ A+ LK+KL + E++A
Sbjct: 245 RASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQA 304
Query: 236 SEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E+ +IRG+ + WG QIR+YVFHPY +VKD RT ET + +VMDG++ PFI+SYL+
Sbjct: 305 REMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLR 363
>sp|Q2YSH5|RF2_STAAB Peptide chain release factor 2 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=prfB PE=3 SV=2
Length = 369
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 72/359 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQE----------- 55
++++++ + + +IR S L+ E + E E A+ +FWDN+ +AQ+
Sbjct: 6 IKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAI 65
Query: 56 -----TLQALTDVKDKI-NLL----------------TDFKTKMDDAVTIVKLTEEMDST 93
TLQA D D +LL +FK K+D+ + L D+
Sbjct: 66 VNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDAN 125
Query: 94 DAGL-LEEAASIIKELNKALDQFELTQLLSG------------PYDKEGAVISITAGAGG 140
+A L L A + + A F + Q P D E + S+T G
Sbjct: 126 NAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGD-EAGIKSVTLLIKG 184
Query: 141 TDA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFS 175
+A TSF+ +V+P + ++++I +D+ +
Sbjct: 185 HNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTF 244
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
RA G GGQ++NK E+A+RITH P+G+ V ERSQ+ N+ A+ LK+KL + E++A
Sbjct: 245 RASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQA 304
Query: 236 SEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E+ +IRG+ + WG QIR+YVFHPY +VKD RT ET + +VMDG++ PFI+SYL+
Sbjct: 305 REMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLR 363
>sp|A6TZN3|RF2_STAA2 Peptide chain release factor 2 OS=Staphylococcus aureus (strain
JH1) GN=prfB PE=3 SV=1
Length = 369
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 175/359 (48%), Gaps = 72/359 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQE----------- 55
++++++ + + +IR S L+ E + E E A+ +FWDN+ +AQ+
Sbjct: 6 IKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAI 65
Query: 56 -----TLQALTDVKDKI-NLL----------------TDFKTKMDDAVTIVKLTEEMDST 93
TLQA D D +LL +FK K+D+ + L D+
Sbjct: 66 VNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDAN 125
Query: 94 DAGL-LEEAASIIKELNKALDQFELTQLLSG------------PYDKEGAVISITAGAGG 140
+A L L A + + A F + Q P D E + S+T G
Sbjct: 126 NAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGD-EAGIKSVTLLIKG 184
Query: 141 TDA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFS 175
+A TSF+ +V+P + ++++I +D+ +
Sbjct: 185 HNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTF 244
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
RA G GGQ++NK E+A+RITH P+G+ V ERSQ+ N+ A+ LK+KL + E++A
Sbjct: 245 RASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQA 304
Query: 236 SEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E+ +IRG+ + WG QIR+YVFHPY +VKD RT ET + +VMDG++ PFI+SYL+
Sbjct: 305 REMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLR 363
>sp|Q3K2F4|RF2_STRA1 Peptide chain release factor 2 OS=Streptococcus agalactiae serotype
Ia (strain ATCC 27591 / A909 / CDC SS700) GN=prfB PE=3
SV=1
Length = 365
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ EVMP L +++++V++ ++D+++ R+GG GGQNVNKV T VR+THIPTG+ V
Sbjct: 211 HTSFASVEVMPEL-DDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVV 269
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
T +R+Q N+ +A+ L+AKL + +E++A E+ ++GD + WG QIR+YVF PY
Sbjct: 270 SSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWGSQIRSYVFTPYT 329
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
+VKD RT E + + VMDGE+ FI +YLK++
Sbjct: 330 MVKDHRTNFELAQVDKVMDGEINGFIDAYLKWR 362
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R+ + +++ R S L +LE+E+A LE + + FW++ AQ+T Q L ++K K
Sbjct: 6 IRQKIVENKEKLTSFRRSLDLDRLEEEIALLENQMTEPDFWNDNIAAQKTSQELNELKGK 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ + + D+ ++++ +E DS L EE + +L+K + +E+T LLS PYD
Sbjct: 66 YDTFHNMQELSDETELLLEMLDEDDS----LKEELEENLMQLDKIMGAYEMTLLLSEPYD 121
Query: 127 KEGAVISITAGAGGTDAQ 144
A++ I G+GGT+AQ
Sbjct: 122 HNNAILEIHPGSGGTEAQ 139
>sp|A5IM04|RF2_THEP1 Peptide chain release factor 2 OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=prfB PE=3 SV=1
Length = 367
Score = 157 bits (397), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 111/165 (67%), Gaps = 1/165 (0%)
Query: 131 VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 190
++ I+ TSF+ V+P + ++ +D++I EDL+I RA G GGQ VNK E+
Sbjct: 198 LVRISPFDAARRRHTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTES 256
Query: 191 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 250
AVRITH+PTG+ V C ERSQ NK AL LKAKL + E++ EI++I+G+ W
Sbjct: 257 AVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKQREIQEIQGELKDISW 316
Query: 251 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 295
G QIR+YVFHPY +VKD RTG ET+++ +VMDG+++ FI++ L Y
Sbjct: 317 GNQIRSYVFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 361
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 5 YNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVK 64
+ R +E + ++I + ++++E+ E+E K D S WD++ +A+E Q L +K
Sbjct: 4 FETRTRMEELEKKYKDILSVVNENEVDREIEEIEKKLTDPSVWDDQKKAREYTQKLKRLK 63
Query: 65 DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGP 124
+ L ++ +D ++L++E D + + I++EL A+ + EL +L+G
Sbjct: 64 NISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGK 119
Query: 125 YDKEGAVISITAGAGGTDAQ 144
YD A +S+ GAGGT++Q
Sbjct: 120 YDPNNAYLSVHPGAGGTESQ 139
>sp|B1LB88|RF2_THESQ Peptide chain release factor 2 OS=Thermotoga sp. (strain RQ2)
GN=prfB PE=3 SV=1
Length = 367
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 111/165 (67%), Gaps = 1/165 (0%)
Query: 131 VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 190
++ I+ TSF+ V+P + ++ +D++I EDL+I RA G GGQ VNK E+
Sbjct: 198 LVRISPFDAARRRHTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTES 256
Query: 191 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 250
AVRITH+PTG+ V C ERSQ NK AL LKAKL + E++ EI++I+G+ W
Sbjct: 257 AVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISW 316
Query: 251 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 295
G QIR+Y+FHPY +VKD RTG ET+++ +VMDG+++ FI++ L Y
Sbjct: 317 GNQIRSYIFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 361
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 5 YNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVK 64
+ + +E + +++ + ++ KEL E+E K D S WD++ +A+E Q L +K
Sbjct: 4 FETKTKIEELEKKYKDVLSVVNEDEINKELEEVEKKLTDPSVWDDQKKAREYTQKLKRLK 63
Query: 65 DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGP 124
+ L ++ +D ++L++E D + + I++EL A+ + EL +L+G
Sbjct: 64 NISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGK 119
Query: 125 YDKEGAVISITAGAGGTDAQ 144
YD A +S+ GAGGT++Q
Sbjct: 120 YDPNNAYLSVHPGAGGTESQ 139
>sp|A2RFN2|RF2_STRPG Peptide chain release factor 2 OS=Streptococcus pyogenes serotype
M5 (strain Manfredo) GN=prfB PE=3 SV=1
Length = 365
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ EVMP L + +++V++ ++D+++ R+GG GGQNVNKV T VR+THIPTG+ V
Sbjct: 211 HTSFASVEVMPEL-DNTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVV 269
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
T +R+Q N+ +A+ L+AKL + +E++A E+ ++GD + WG QIR+YVF PY
Sbjct: 270 SSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWGSQIRSYVFTPYT 329
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
+VKD RT E + + VMDGE+ FI +YLK++
Sbjct: 330 MVKDHRTNFELAQVDKVMDGEINGFIDAYLKWR 362
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R+ + +++ R S L +LE+E+A LE + FW++ AQ+T Q L ++K K
Sbjct: 6 IRQKIVENKEKLTSFRRSLDLDRLEEEIALLENHMTEPDFWNDNIAAQKTSQELNELKGK 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ + + D+ ++++ +E DS L EE + +L+K + +E+T LLS PYD
Sbjct: 66 YDTFHNMQELSDETELLLEMLDEDDS----LKEELEENLMQLDKIMGAYEMTLLLSEPYD 121
Query: 127 KEGAVISITAGAGGTDAQ 144
A++ I G+GGT+AQ
Sbjct: 122 HNNAILEIHPGSGGTEAQ 139
>sp|Q9X1R5|RF2_THEMA Peptide chain release factor 2 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=prfB PE=3 SV=1
Length = 369
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 111/165 (67%), Gaps = 1/165 (0%)
Query: 131 VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 190
++ I+ TSF+ V+P + ++ +D++I EDL+I RA G GGQ VNK E+
Sbjct: 200 LVRISPFDAARRRHTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTES 258
Query: 191 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 250
AVRITH+PTG+ V C ERSQ NK AL LKAKL + E++ EI++I+G+ W
Sbjct: 259 AVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISW 318
Query: 251 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 295
G QIR+Y+FHPY +VKD RTG ET+++ +VMDG+++ FI++ L Y
Sbjct: 319 GNQIRSYIFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 363
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 5 YNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVK 64
+ + +E + +++ + ++ KEL E+E K D S WD++ +A+E Q L +K
Sbjct: 6 FETKTKIEELEKKYKDVLSVVNEDEINKELEEVEKKLTDPSVWDDQKKAREYTQKLKRLK 65
Query: 65 DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGP 124
+ L ++ +D ++L++E D + + I++EL A+ + EL +L+G
Sbjct: 66 NISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGK 121
Query: 125 YDKEGAVISITAGAGGTDAQ 144
YD A +S+ GAGGT++Q
Sbjct: 122 YDPNNAYLSVHPGAGGTESQ 141
>sp|Q0SR12|RF2_CLOPS Peptide chain release factor 2 OS=Clostridium perfringens (strain
SM101 / Type A) GN=prfB PE=3 SV=1
Length = 364
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+ EV+P L + D++I DL I RAGG GGQ+VNK E+AVRITHIPTG+ V
Sbjct: 214 QTSFASVEVLPELTSDQ-DIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVV 272
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
+C ERSQ +N+ A+ LK+KL+ + E +I+ + G+ WG QIR+YVFHPY
Sbjct: 273 QCQNERSQFSNRDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYS 332
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYL 293
+VKD RT ETS++ VM G+++ FI +YL
Sbjct: 333 MVKDHRTNVETSNVNGVMGGDIDNFIIAYL 362
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 16 DRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKT 75
+ ++E+ AS L LEK+ AELE+K ++ FWD+ +AQE Q VKDKI+ +
Sbjct: 17 NNLKEMGASLDLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNE 76
Query: 76 KMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISIT 135
++DD + +L EE D A +E S +K L+K +D ++ +LSG YD+ A++++
Sbjct: 77 RIDDVEVLKELMEENDEETA---KEIISEVKALSKEIDTLKIETILSGEYDRNNAILTLH 133
Query: 136 AGAGGTDAQ 144
G GG+DA
Sbjct: 134 TGVGGSDAN 142
>sp|B9L0E3|RF2_THERP Peptide chain release factor 2 OS=Thermomicrobium roseum (strain
ATCC 27502 / DSM 5159 / P-2) GN=prfB PE=3 SV=1
Length = 374
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 104/151 (68%), Gaps = 1/151 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ EV+PL+ EE DV+I EED+ I RA G GGQ+VNK E+AVRITH+PTG+ V
Sbjct: 210 HTSFALVEVLPLV-EEDDDVEIREEDIRIDTFRASGHGGQHVNKTESAVRITHLPTGIVV 268
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C ERSQ+ N+ A+ LKA+LL + QR E +++G V WG +IR+YV HPY
Sbjct: 269 TCQNERSQIQNRETAMKILKARLLELKIRQRQEEQARLKGKPVVTGWGNRIRSYVLHPYT 328
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
+V D RT T +I +V++GE++PFI++YL
Sbjct: 329 MVTDHRTEVSTPNIQAVLEGEIDPFIEAYLH 359
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Query: 10 DVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL 69
D+E +R++ I L +++ +LE +AAD W + AQ L+ L+ ++D +
Sbjct: 8 DLEELVERLDRIGVRLCLPSKRQQIEQLEHEAADPDLWQDPQRAQSLLRRLSQLRDLVQE 67
Query: 70 LTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEG 129
+ D + + L + D AG +E+ A+ EL + + Q EL LL+G YD
Sbjct: 68 WETLSQQARDLLELRALASD-DLELAGQVEQEAT---ELAERVRQLELRLLLTGQYDGHD 123
Query: 130 AVISITAGAGGTDAQ 144
A++++ AG GG DAQ
Sbjct: 124 AILAVHAGTGGVDAQ 138
>sp|A6LN93|RF2_THEM4 Peptide chain release factor 2 OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=prfB PE=3 SV=1
Length = 369
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Query: 131 VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 190
++ I+ TSF+ VMP + E+ +DV+I EDL I RA G GGQ VNK E+
Sbjct: 198 LVRISPFDANKRRHTSFASVNVMPEI-EDDIDVEINPEDLRIDTYRASGAGGQYVNKTES 256
Query: 191 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 250
AVRITHIPTG+ V C ERSQL NK A+ LKA+L + E+R ++++I+G+ W
Sbjct: 257 AVRITHIPTGIVVTCQTERSQLQNKETAMKVLKARLYQLELEKRQKQLEEIQGELKDISW 316
Query: 251 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 295
G QIR+YVF PY +VKD RT ET +I +VMDG+++ FI+S L +
Sbjct: 317 GNQIRSYVFQPYTMVKDHRTNVETGNIDAVMDGDIDIFIESELIF 361
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 5 YNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVK 64
Y L++ ++ R E+I + +KEL ELE +S FW+++ A+E Q ++
Sbjct: 4 YELKQRIDEVKKRYEDIVKVFHPEDKKKELEELEKLMGESDFWNDQKRAKEISQNAQRIR 63
Query: 65 DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGP 124
I+ + D + K+ ++ E+ DA L+ +I ++ + + FEL +L+
Sbjct: 64 KIIDDMVDIENKL----EDLEAGLELLEEDATFLDTIKQLIDDIERKVKTFELELILNEK 119
Query: 125 YDKEGAVISITAGAGGTDAQ--TSFSGAEVMPLLPEESMDVQI 165
+D A +SI GAGGT++Q S M DVQI
Sbjct: 120 FDSSNAYLSIHPGAGGTESQDWASMLLRMYMRWAERRGFDVQI 162
>sp|P28367|RF2_BACSU Peptide chain release factor 2 OS=Bacillus subtilis (strain 168)
GN=prfB PE=3 SV=2
Length = 366
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF EVMP +E +D+ I ED+++ RA G GGQ+VN ++AVRITH+PT V V
Sbjct: 213 HTSFVSCEVMPEFNDE-IDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C ERSQ+ N+ +A+ LKAKL E++ +E+ +IRG+ + WG QIR+YVFHPY
Sbjct: 272 TCQTERSQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYS 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYS 298
+VKD RT E ++ +VMDG+++ FI +YL+ K S
Sbjct: 332 MVKDHRTNTEMGNVQAVMDGDIDTFIDAYLRSKLS 366
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R ++E + R+ + R S L+ E +AEL+ + AD FW+++ +AQ + +KD
Sbjct: 6 IRAELENMASRLADFRGSLDLESKEARIAELDEQMADPEFWNDQQKAQTVINEANGLKDY 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+N ++ L +E TD L E +K L K ++FEL LLS PYD
Sbjct: 66 VNSYKKLNESHEELQMTHDLLKEEPDTDLQL--ELEKELKSLTKEFNEFELQLLLSEPYD 123
Query: 127 KEGAVISITAGAGGTDAQ 144
K A++ + GAGGT++Q
Sbjct: 124 KNNAILELHPGAGGTESQ 141
>sp|Q88YL5|RF2_LACPL Peptide chain release factor 2 OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=prfB PE=3 SV=2
Length = 377
Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ +VMP L ++++DV I EDL+I RA G GGQ+VNK +AVRITH+PTG+ V
Sbjct: 219 HTSFASVDVMPEL-DDTVDVDIRPEDLKIDVYRASGAGGQHVNKTSSAVRITHVPTGIVV 277
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
+RSQL N+ AL+ L+AKL EE++A E I+G+ + WG QIR+YVFHPY
Sbjct: 278 ASQAQRSQLQNRQTALNMLRAKLYEREEEKKAKERAAIQGEQMDIGWGSQIRSYVFHPYT 337
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
+VKD RT +E+ +VMDG+L+PF+ +YL++K
Sbjct: 338 MVKDHRTNYESHHGQAVMDGDLDPFMDAYLQWK 370
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 11 VEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLL 70
+E V++ R S L L + + E E + A+ FWD++A AQ+ + +K K +
Sbjct: 16 IEEMQSAVDDFRGSLDLDALNESIQENEARMAEPGFWDDQAAAQKVIDENNVLKGKYDTF 75
Query: 71 TDFKTKMDD-AVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEG 129
++ D AV L+EE DA + E + + L Q+ L LL GPYD+
Sbjct: 76 KQLADEVGDLAVAYELLSEE---PDAEMQAEFETDFQHAEHDLQQYRLNLLLDGPYDRNN 132
Query: 130 AVISITAGAGGTDAQ 144
A++ I GAGGT++Q
Sbjct: 133 AILEIHPGAGGTESQ 147
>sp|Q927Y4|RF2_LISIN Peptide chain release factor 2 OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=prfB PE=3 SV=2
Length = 366
Score = 154 bits (389), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF +VMP L +E +++++ EDL+I RA G GGQ++N ++AVR+THIP+G+ V
Sbjct: 213 HTSFVSVDVMPELDDE-IEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C ERSQL N+ +A+ LK KL +E++ E+ +IRG+ + WG QIR+YVFHPY
Sbjct: 272 TCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYS 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
+VKD RT +ET +I +VMDG+L+ FI +YL+
Sbjct: 332 MVKDHRTNYETGNIQAVMDGDLDDFINAYLR 362
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R ++E + ++++ R S L +E +AELE + D +FW+++ AQ+ + K+
Sbjct: 6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKET 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ + + ++L +E D L E IK + +FEL +LS PYD
Sbjct: 66 YQAFHALEEEQESMEISLELLKE--EADEDLQAELEKDIKAYVATISEFELKLMLSDPYD 123
Query: 127 KEGAVISITAGAGGTDAQ 144
K A++ + GAGGT++Q
Sbjct: 124 KNNAILELHPGAGGTESQ 141
>sp|Q71WR9|RF2_LISMF Peptide chain release factor 2 OS=Listeria monocytogenes serotype
4b (strain F2365) GN=prfB PE=3 SV=1
Length = 366
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF +VMP L ++ +++++ EDL+I RA G GGQ++N ++AVR+THIP+G+ V
Sbjct: 213 HTSFVSVDVMPEL-DDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C ERSQL N+ +A+ LK KL +E++ E+ +IRG+ + WG QIR+YVFHPY
Sbjct: 272 TCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYS 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
+VKD RT +ET +I +VMDG+L+ FI +YL+
Sbjct: 332 MVKDHRTNYETGNIQAVMDGDLDEFINAYLR 362
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R ++E + ++++ R S L +E +AELE + D +FW+++ AQ+ + K+
Sbjct: 6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKET 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ + + ++L +E D L EE IK + +FEL +LS PYD
Sbjct: 66 YQAFHALEEEQESMEISLELLKE--EADEDLQEELEKDIKAYMATISEFELKLMLSDPYD 123
Query: 127 KEGAVISITAGAGGTDAQ 144
K A++ + GAGGT++Q
Sbjct: 124 KNNAILELHPGAGGTESQ 141
>sp|Q03ZQ7|RF2_LEUMM Peptide chain release factor 2 OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=prfB PE=3
SV=1
Length = 372
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF +VMP L ++S++V++ ++D+++ R+GG GGQNVNKV T VR+TH PTG+ V
Sbjct: 214 HTSFVSVDVMPEL-DDSIEVEVRDDDVKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVV 272
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
T ER+Q N+ A+ LK+KL + E++ +E + G+ ++ WG QIR+YV HPY+
Sbjct: 273 SSTVERTQYGNRDYAMRLLKSKLYQLELEKKEAERAALTGEKMENGWGSQIRSYVLHPYQ 332
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSM 299
+VKD RT +ET+ +V+DG+L+PFI +YL+++ S+
Sbjct: 333 MVKDHRTNYETNQPQAVLDGDLDPFINAYLQWQLSL 368
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 11 VEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLL 70
V + +E R + ++ L +E+A+ E + + FW++ +AQ+ ++ +K++ +
Sbjct: 10 VSDMQENIERFRGTLDMEALTEEIADYENRMTEPDFWNDNEKAQKVIEENNVLKNRRDSF 69
Query: 71 TDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGA 130
+ ++++ ++++ E D D L E + + + K +D + L QLL+ PYD A
Sbjct: 70 LNLTNQVEELELLIEMAVE-DPEDEDTLGELEAGVAKAQKDIDAYNLEQLLTEPYDANNA 128
Query: 131 VISITAGAGGTDA 143
++ I G+GGT++
Sbjct: 129 ILEIHPGSGGTES 141
>sp|B8G607|RF2_CHLAD Peptide chain release factor 2 OS=Chloroflexus aggregans (strain
MD-66 / DSM 9485) GN=prfB PE=3 SV=1
Length = 367
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 166/286 (58%), Gaps = 37/286 (12%)
Query: 24 SAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQAL---TDVKDKINLLTDFKTKMDD- 79
+A L+ +++E+A+ E++ S +D+R +A ++QA TD +D +L T+ +
Sbjct: 98 AAELRAVQREVAQRELEILLSGPYDDR-DAFLSIQAGMGGTDAQDWAAMLLRMYTRWAER 156
Query: 80 ---AVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGA------ 130
V ++ L+E +AG+ ++A+I + GPY A
Sbjct: 157 RGYTVNLIDLSE---GEEAGI--KSATI---------------EIRGPYAYGYARAEAGV 196
Query: 131 --VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKV 188
+I ++ QTSF+ EVMP + +++ +V+I EDL I R+GG GGQ VN
Sbjct: 197 HRLIRLSPFNAAHTRQTSFARVEVMPEV-DDAPEVEIKPEDLRIDVFRSGGHGGQGVNTT 255
Query: 189 ETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA 248
++AVRITH+PTG+ V C ERSQ+ N+ AL L+A+LL +++A E ++RG+ +A
Sbjct: 256 DSAVRITHLPTGIVVTCQNERSQIQNRETALRVLRARLLERELQRQAEERARLRGEYREA 315
Query: 249 EWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
+G Q+R Y HP LVKD RT +ETS++ +V+DGE++PFI+++L+
Sbjct: 316 AFGNQMRTYYLHPSTLVKDHRTDYETSNVQAVLDGEIDPFIEAFLR 361
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
L +++E +R +R L + E+ +LE++A+D W+ AQE +Q LT +K++
Sbjct: 5 LHEELETIRERFANLRGHLDLAAKQAEIEQLEVRASDPELWNTPRVAQELMQRLTRLKEE 64
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ L D +M +++L E+ D L + A+ ++ + + + Q EL LLSGPYD
Sbjct: 65 VALWNDLDHRMTSLAELIELAEQ--EGDESLAADLAAELRAVQREVAQRELEILLSGPYD 122
Query: 127 KEGAVISITAGAGGTDAQ 144
A +SI AG GGTDAQ
Sbjct: 123 DRDAFLSIQAGMGGTDAQ 140
>sp|Q8CPZ1|RF2_STAES Peptide chain release factor 2 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=prfB PE=3 SV=2
Length = 371
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 102/151 (67%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ +V+P + ++++I +D+ + RA G GGQ++NK E+A+RITH PTG+ V
Sbjct: 213 HTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 272
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
ERSQ+ N+ A+ LK+KL + E++ E+ +IRG+ WG QIR+YVFHPY
Sbjct: 273 NNQNERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYS 332
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
++KD RT ET + +VMDGE+ PFI++YL+
Sbjct: 333 MIKDHRTNEETGKVDAVMDGEIGPFIEAYLR 363
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+++++E + + +IR S L+ E + E E D FW+++ +AQ+ + +K
Sbjct: 6 IKRNLEEYQNHLNQIRGSLDLENKETNIQEYEEMMTDPDFWNDQTKAQDIIDKNNALKSI 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+N +DD +L +E D + E ++ + +DQ+EL LL GP+D
Sbjct: 66 VNGYYQLTNAVDDMSATRELLQEEYDEDMKIELEEEV--QQFEEQIDQYELQLLLDGPHD 123
Query: 127 KEGAVISITAGAGGTDAQTSFS 148
A++ + GAGGT++Q S
Sbjct: 124 ANNAILELHPGAGGTESQDWVS 145
>sp|Q5HQX5|RF2_STAEQ Peptide chain release factor 2 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=prfB PE=3 SV=1
Length = 371
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 102/151 (67%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF+ +V+P + ++++I +D+ + RA G GGQ++NK E+A+RITH PTG+ V
Sbjct: 213 HTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 272
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
ERSQ+ N+ A+ LK+KL + E++ E+ +IRG+ WG QIR+YVFHPY
Sbjct: 273 NNQNERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYS 332
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
++KD RT ET + +VMDGE+ PFI++YL+
Sbjct: 333 MIKDHRTNEETGKVDAVMDGEIGPFIEAYLR 363
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+++++E + + +IR S L+ E + E E D FW+++ +AQ+ + +K
Sbjct: 6 IKRNLEEYQNHLNQIRGSLDLENKETNIQEYEEMMTDPDFWNDQTKAQDIIDKNNALKSI 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+N +DD +L +E D + E ++ + +DQ+EL LL GP+D
Sbjct: 66 VNGYYQLTNAVDDMSATRELLQEEYDEDMKIELEEEV--QQFEEQIDQYELQLLLDGPHD 123
Query: 127 KEGAVISITAGAGGTDAQTSFS 148
A++ + GAGGT++Q S
Sbjct: 124 ANNAILELHPGAGGTESQDWVS 145
>sp|Q8Y4D8|RF2_LISMO Peptide chain release factor 2 OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=prfB PE=3 SV=2
Length = 366
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF +VMP L + +++++ EDL+I RA G GGQ++N ++AVR+THIP+G+ V
Sbjct: 213 HTSFVSVDVMPEL-DGDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C ERSQL N+ +A+ LK KL +E++ E+ +IRG+ + WG QIR+YVFHPY
Sbjct: 272 TCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYS 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
+VKD RT +ET +I +VMDG+L+ FI +YL+
Sbjct: 332 MVKDHRTNYETGNIQAVMDGDLDDFINAYLR 362
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+R ++E + ++++ R S L +E +AELE + D +FW+++ AQ+ + K+
Sbjct: 6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKET 65
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
+ + + ++L +E D L EE IK + FEL +LS PYD
Sbjct: 66 YQAFHALEEEQESMEISLELLKE--EADEDLQEELEKDIKAYMATISAFELKLMLSDPYD 123
Query: 127 KEGAVISITAGAGGTDAQ 144
K A++ + GAGGT++Q
Sbjct: 124 KNNAILELHPGAGGTESQ 141
>sp|B1YLH0|RF2_EXIS2 Peptide chain release factor 2 OS=Exiguobacterium sibiricum (strain
DSM 17290 / JCM 13490 / 255-15) GN=prfB PE=3 SV=1
Length = 366
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 167/359 (46%), Gaps = 73/359 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETL--------- 57
+R E +++E +AS L+ + ELE + FW+N+ AQ+ +
Sbjct: 6 IRNTAEWMEKKLDEYKASLDLETKISRIEELENEMTYPDFWNNQESAQKVIDESNGLKAM 65
Query: 58 ----QALTDVKDKINLLT--------------------DFKTKMDDAVTIVKLTEEMDST 93
Q L D + I L D K K D+ + L E D+
Sbjct: 66 VDKYQHLADGHENIVLTYELIKEEPDVELQEELESELGDIKKKFDEFELQILLNGEYDAN 125
Query: 94 DAGL-----------LEEAASIIKELNKALDQ--FELTQLLSGPYDKEGAVISITAGAGG 140
+A L + A+ +++ + D+ +++ + P D E V S+T G
Sbjct: 126 NAILELHPGAGGTESQDWASMLLRMYQRFCDKQGWKVETMDYQPGD-EAGVKSVTLRIQG 184
Query: 141 TDA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFS 175
+A TSF +VMP ++ +D++I EDL +
Sbjct: 185 HNAYGYLKAEKGIHRLVRISPFDSSGRRHTSFVSCDVMPEFNDD-IDIEIRTEDLRVDTY 243
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
RA G GGQ++N ++AVRITH+PTGV V C +ERSQ+ N+ A+ LKAKL E++
Sbjct: 244 RASGAGGQHINTTDSAVRITHVPTGVVVSCQQERSQIKNREAAMKMLKAKLYQREIEEKQ 303
Query: 236 SEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
++ +IRG+ WG QIR+YVFHPY +VKD RT +E + MDG++ FI +YL+
Sbjct: 304 KKLDEIRGEKSDIAWGSQIRSYVFHPYSMVKDHRTNYEVGNTQGAMDGDIMGFIDAYLR 362
>sp|A8M3R1|RF2_SALAI Peptide chain release factor 2 OS=Salinispora arenicola (strain
CNS-205) GN=prfB PE=3 SV=1
Length = 373
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 110/162 (67%), Gaps = 2/162 (1%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+G EV+P++ E++ + IPE ++ R+ G GGQ+VN ++AVRITHIPTG+ V
Sbjct: 213 QTSFAGVEVLPVV-EQTDHIDIPENEMRTDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C E+SQL NK AL L+A+LL ++ ++++ ++ DA + WG Q+R+YV HPY+
Sbjct: 272 TCQNEKSQLQNKASALRVLQARLLERKRQEEQAKLQGLKTDAAGS-WGDQMRSYVLHPYQ 330
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASD 305
+VKD+RT ET SV DGEL+ FI++ ++++ LS +
Sbjct: 331 MVKDLRTEQETGSPSSVFDGELDAFIEAGIRWRKQQQLSGDN 372
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTD 62
DF KD++ +E + + +L + A LE A+ WD++A AQ+ L+
Sbjct: 5 DFAEQLKDLDTTLRNIESV---LDIDRLRADKARLEEAASAPDLWDDQARAQQVTSQLSY 61
Query: 63 VKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLS 122
V +I LTD ++++DD +++L E +D G+L E A+ I L K++D+ E+ LLS
Sbjct: 62 VNGEITKLTDLRSRLDDTQVLLELAEA--ESDPGVLTEVAAEITGLAKSIDEMEVRTLLS 119
Query: 123 GPYDKEGAVISITAGAGGTDA 143
G YD A+++I AGAGG DA
Sbjct: 120 GEYDSREALVAIRAGAGGVDA 140
>sp|A6WEK6|RF2_KINRD Peptide chain release factor 2 OS=Kineococcus radiotolerans (strain
ATCC BAA-149 / DSM 14245 / SRS30216) GN=prfB PE=3 SV=1
Length = 367
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 106/153 (69%), Gaps = 2/153 (1%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+G EV+P++ E V +PE ++ + R+ G GGQ+VN ++AVR+TH+PTG+ V
Sbjct: 212 QTSFAGVEVLPVVAETDH-VDVPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHLPTGIVV 270
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C E+SQL NK A+ L+AKLL A + R +E+ ++GD WG Q+R+YV HPY+
Sbjct: 271 TCQNEKSQLQNKAAAMRVLQAKLLEKARKDRQAELDALKGDD-SGSWGNQMRSYVLHPYQ 329
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
+VKD+RT +E + S+ DGE++ F+++ ++++
Sbjct: 330 MVKDLRTNYEVGNTSSIFDGEIDSFLEAGIRWR 362
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 21 IRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDA 80
IR + L L KELA+L +AA S WD+ AQ L+ V+ +++ + ++DD
Sbjct: 19 IREVSDLDALRKELADLNDEAAAPSLWDDPEHAQTVTSRLSAVQAELDRIEKMGGRIDDL 78
Query: 81 VTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGG 140
+V+L+E D DA L EA + + E+ + L Q E+ LLSG YD A+++I + AGG
Sbjct: 79 EVLVELSE--DEHDADSLAEAETELNEVKEQLAQLEVRTLLSGEYDSREAIVTIRSEAGG 136
Query: 141 TDA 143
DA
Sbjct: 137 VDA 139
>sp|B1MW26|RF2_LEUCK Peptide chain release factor 2 OS=Leuconostoc citreum (strain KM20)
GN=prfB PE=3 SV=1
Length = 372
Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF +VMP L +++++V++ ++D+++ R+GG GGQNVNKV T VR+TH PTG+ V
Sbjct: 214 HTSFVSVDVMPEL-DDTIEVEVRDDDIKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVV 272
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
T ER+Q N+ A+ LK+KL + E++ +E + G+ ++ WG QIR+YV HPY+
Sbjct: 273 SSTVERTQYGNRDYAMKLLKSKLYQLELEKQEAERAALTGEKMENGWGSQIRSYVLHPYQ 332
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSM 299
+VKD RT +ET+ V+DG+L+PFI +YL+++ S+
Sbjct: 333 MVKDHRTNYETNQPQQVLDGDLDPFINAYLQWQLSL 368
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 16 DRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKT 75
+ + + + L+ L +E+A+ E + + FWD+ +AQ+ ++ +K++ + +
Sbjct: 15 ENIARFQGTLDLEALTEEIADFENRMTEPGFWDDNTKAQKVIEENNVLKNRRDSFLNLTN 74
Query: 76 KMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISIT 135
+ ++ ++ + E D D E A I + K ++ + L QLL+ PYD A++ +
Sbjct: 75 QAEEIEVLIDMLAE-DPGDVDTATELADSIAQAQKDVEAYNLEQLLTEPYDANNAILEVH 133
Query: 136 AGAGGTDA 143
G+GGT++
Sbjct: 134 PGSGGTES 141
>sp|C4L5K9|RF2_EXISA Peptide chain release factor 2 OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=prfB PE=3 SV=1
Length = 366
Score = 151 bits (381), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
TSF +VMP ++ +++++ EDL I RA G GGQ++N ++AVRITH+PTGV V
Sbjct: 213 HTSFVSCDVMPEF-DDDIEIEVRTEDLRIDTYRASGAGGQHINTTDSAVRITHVPTGVVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C ERSQ+ N+ A+ LKAKL +++ ++ +IRG+ WG QIR+YVFHPY
Sbjct: 272 SCQTERSQIKNRESAMKMLKAKLYQRELDEQQRKLDEIRGEKTDIGWGSQIRSYVFHPYS 331
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
+VKD RT +E + VMDG++ PFI +YL+
Sbjct: 332 MVKDHRTNYEVGNTSGVMDGDVMPFIDAYLR 362
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 2/139 (1%)
Query: 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKD 65
++R ++EA + R+E RAS L + E +AELE + FWDN+ +AQ+ + +K
Sbjct: 5 DIRNELEAMAKRLENYRASLNLTEKEARIAELENEMTYPDFWDNQEKAQKVIDESNGLKA 64
Query: 66 KINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPY 125
++ D + +D ++L +E DA + EE I+ L K D FEL LL+GPY
Sbjct: 65 MVDKYQDLANQHEDGEVTLELIKE--EPDAEMQEELGESIQALKKEFDDFELEILLNGPY 122
Query: 126 DKEGAVISITAGAGGTDAQ 144
D A++ + GAGGT++Q
Sbjct: 123 DANNAILELHPGAGGTESQ 141
>sp|A4X3K6|RF2_SALTO Peptide chain release factor 2 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=prfB PE=3 SV=1
Length = 373
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 111/163 (68%), Gaps = 2/163 (1%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+G EV+P++ E++ + IPE ++ R+ G GGQ+VN ++AVRITHIPTG+ V
Sbjct: 213 QTSFAGVEVLPVV-EQTDHIDIPENEMRFDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C E+SQL NK AL L+A+LL ++ ++++ ++ DA + WG Q+R+YV HPY+
Sbjct: 272 TCQNEKSQLQNKASALRVLQARLLERKRQEEQAKLQGLKTDAAGS-WGDQMRSYVLHPYQ 330
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASDA 306
+VKD+RT ET +V DGEL+ FI++ ++++ L+ +A
Sbjct: 331 MVKDLRTEQETGTPAAVFDGELDAFIEAGIRWRKQQQLADDNA 373
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTD 62
D+ KD++A +E + + +L + A LE A+ WD++A AQ+ L+
Sbjct: 5 DYAEQLKDLDATLRNIESV---LDIDRLRADKARLEEAASAPDLWDDQARAQQVTSQLSY 61
Query: 63 VKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLS 122
V +IN L + ++++DDA +++L E +D G L E + + L KA+D+ E+ LLS
Sbjct: 62 VNGEINKLAELRSRLDDAKVLLELAEA--ESDPGALTEVEAEVAGLAKAIDEMEVRTLLS 119
Query: 123 GPYDKEGAVISITAGAGGTDA 143
G YD A+++I AGAGG DA
Sbjct: 120 GEYDSREALVAIRAGAGGVDA 140
>sp|A0LVP4|RF2_ACIC1 Peptide chain release factor 2 OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=prfB PE=3 SV=1
Length = 369
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 105/148 (70%), Gaps = 2/148 (1%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+G +V+P++ E++ + IPE+++ + R+ G GGQ VN ++AVRITH+PTG+ V
Sbjct: 213 QTSFAGVDVVPVV-EKTDHIDIPEDEIRVDVFRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C ERSQL N+ A+ L+A+LL ++ A+++ +RG+ + WG QIRNYV HPY+
Sbjct: 272 TCQNERSQLQNRATAMMVLQARLLERRRQEEAAKLAALRGETTTS-WGTQIRNYVLHPYQ 330
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKS 291
LVKD+RT ETS+ V+DGE++ FI +
Sbjct: 331 LVKDLRTEVETSNTAGVLDGEIDEFIDA 358
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 2 QDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALT 61
QD + KD++ R+ I L + +E A+LE +AAD W++ AQ L+
Sbjct: 4 QDPHEHLKDLDT---RLAGIEQVLDLPAMRREAADLERQAADPGLWNDPENAQRVTSRLS 60
Query: 62 DVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLL 121
++ +I + + ++DD + + +L E D EA + + L KA+D E+ LL
Sbjct: 61 FLQAEIRRVEGLRKRLDDVMVLFELAEA--ENDEPTRTEALAEMAALQKAIDDLEVRTLL 118
Query: 122 SGPYDKEGAVISITAGAGGTDA 143
SG YD A+++I + AGG DA
Sbjct: 119 SGEYDAREALVTINSQAGGVDA 140
>sp|C0ZXD0|RF2_RHOE4 Peptide chain release factor 2 OS=Rhodococcus erythropolis (strain
PR4 / NBRC 100887) GN=prfB PE=3 SV=1
Length = 368
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 115/160 (71%), Gaps = 2/160 (1%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+ EV+P++ E + ++I E D+ + R+ G GGQ+VN ++AVR+THIPTG+ V
Sbjct: 211 QTSFAEVEVLPVV-ETTDHIEINENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C E+SQL NK+ A+ L+AKLL + ++ +E+ ++GD+ + WG Q+R+YV HPY+
Sbjct: 270 TCQNEKSQLQNKVSAMRVLQAKLLAVKRQEERAEMDALKGDS-GSSWGNQMRSYVLHPYQ 328
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSA 303
+VKD+RT +E ++ +V+DG+++ F+++ ++++ S + SA
Sbjct: 329 MVKDLRTEYEVNNPSAVLDGDIDGFLEAGIRWRMSENQSA 368
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKL 86
+++L + + ELE +AAD W+++ AQ+ L+ + ++ + + ++D+ + +L
Sbjct: 25 VEELRRRIDELEHQAADPGLWNDQEHAQQVTSQLSHAQAELRRIVALRERLDEMPILYEL 84
Query: 87 TEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
E+ + DA + +A + L + E+ +LSG YD+ A+I+I +GAGG DA
Sbjct: 85 AED-EGPDA--VADADAERASLRDDIAAMEVKTMLSGEYDERDALINIRSGAGGIDA 138
>sp|B8HBH8|RF2_ARTCA Peptide chain release factor 2 OS=Arthrobacter chlorophenolicus
(strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)
GN=prfB PE=3 SV=1
Length = 371
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 109/153 (71%), Gaps = 2/153 (1%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+ EV+PL+ E++ + IP+ ++ + R+ G GGQ+VN ++AVR+THIPTGV V
Sbjct: 213 QTSFAAVEVIPLI-EQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGVVV 271
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
E+SQL N+ A+ L+++LL++ +EQ +E K + GD VKA WG Q+R+YV +PY+
Sbjct: 272 SMQNEKSQLQNRAAAMRVLQSRLLLLKKEQEDAEKKALAGD-VKASWGDQMRSYVLNPYQ 330
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296
+VKD+RT HE + +V DGE++ FI + ++++
Sbjct: 331 MVKDLRTEHEVGNTSAVFDGEIDDFIDAGIRWR 363
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 19 EEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMD 78
E I ++ L +++AEL +A + WD+ A AQ+ L+ + ++ LT +++D
Sbjct: 18 ESIERVTDMEALREDIAELSERAGEPDLWDDPAAAQKITSRLSHRQSELERLTTLASRID 77
Query: 79 DAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGA 138
D +V+L + D DA + EAA+ ++ + KAL E+ LLSG YD+ AV+SI AGA
Sbjct: 78 DLEVLVELGQ--DEGDADSMGEAAAELESIQKALKNLEVVTLLSGEYDEREAVVSIRAGA 135
Query: 139 GGTDA 143
GG DA
Sbjct: 136 GGVDA 140
>sp|Q04YD0|RF2_LEPBL Peptide chain release factor 2 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=prfB PE=3 SV=1
Length = 367
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 131 VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 190
++ I+ TSF V P + +E +D++I E+D+ + R+ G GGQ+VN ++
Sbjct: 203 LVRISPFDANKRRHTSFVSVHVSPEIDDE-IDIKIEEKDIRVDVYRSSGAGGQHVNTTDS 261
Query: 191 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 250
AVRITH+P+G+ V C ERSQ+ N+ A LKA+L + +E+ E+++ G+ W
Sbjct: 262 AVRITHLPSGIVVACQNERSQIKNRDTAFKMLKARLYEMEQEKAKEELEKKSGEKKDIAW 321
Query: 251 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
G QIR+YVFHPY LVKD RT HET ++ +VMDG++EPFI +YLK
Sbjct: 322 GSQIRSYVFHPYNLVKDHRTDHETGNVAAVMDGDIEPFILAYLK 365
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKL 86
L+Q + L L K+ D W+N EA+ Q +++ K+ + + D +V+L
Sbjct: 29 LEQDKDRLKALNEKSEDPDLWNNPEEARIVSQKKNELEKKLTPWFTIQQDILDFPDLVEL 88
Query: 87 TEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQ 144
T +D + E + L + ++ EL L D + A ++I GAGGT++Q
Sbjct: 89 T--LDEKGENGIGELSMEYNRLQEKFEELELLGALKNSEDLKPAFLNIHPGAGGTESQ 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,334,369
Number of Sequences: 539616
Number of extensions: 4116314
Number of successful extensions: 16714
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 14505
Number of HSP's gapped (non-prelim): 1711
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)