Query 021839
Match_columns 307
No_of_seqs 198 out of 1681
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 6.6E-83 1.4E-87 599.9 25.7 276 26-305 8-361 (363)
2 TIGR00020 prfB peptide chain r 100.0 4.2E-81 9.2E-86 602.4 32.6 291 3-296 1-363 (364)
3 PRK00578 prfB peptide chain re 100.0 4.4E-80 9.6E-85 596.3 32.9 292 4-298 2-365 (367)
4 PRK05589 peptide chain release 100.0 3.5E-77 7.6E-82 567.0 26.9 252 41-296 1-324 (325)
5 PRK06746 peptide chain release 100.0 3.2E-77 6.9E-82 566.5 26.4 253 41-296 1-325 (326)
6 PRK07342 peptide chain release 100.0 4E-77 8.8E-82 568.3 25.9 256 40-298 2-329 (339)
7 TIGR00019 prfA peptide chain r 100.0 2E-75 4.3E-80 562.0 28.9 273 26-304 8-357 (360)
8 PRK00591 prfA peptide chain re 100.0 3.1E-74 6.8E-79 553.9 29.5 274 26-304 7-357 (359)
9 PRK08787 peptide chain release 100.0 6.3E-71 1.4E-75 520.0 24.1 233 63-299 2-306 (313)
10 KOG2726 Mitochondrial polypept 100.0 3.6E-63 7.8E-68 474.5 22.9 255 35-302 51-382 (386)
11 COG1186 PrfB Protein chain rel 100.0 4.9E-53 1.1E-57 384.2 10.4 152 144-296 87-238 (239)
12 TIGR03072 release_prfH putativ 100.0 2.2E-41 4.9E-46 303.0 12.7 111 144-260 88-198 (200)
13 PRK08179 prfH peptide chain re 100.0 1.1E-40 2.3E-45 298.6 11.3 110 144-259 89-198 (200)
14 PF00472 RF-1: RF-1 domain; I 100.0 9.1E-37 2E-41 251.5 9.3 109 160-269 4-113 (113)
15 PRK09256 hypothetical protein; 99.9 1.1E-22 2.5E-27 173.0 10.0 69 161-229 6-98 (138)
16 KOG3429 Predicted peptidyl-tRN 99.6 3.4E-16 7.3E-21 134.9 6.5 70 161-230 33-127 (172)
17 PF03462 PCRF: PCRF domain; I 99.0 3.5E-10 7.6E-15 93.6 4.9 53 92-144 6-62 (115)
18 PRK10636 putative ABC transpor 90.0 1.9 4.1E-05 45.4 9.7 44 26-69 571-616 (638)
19 PRK11147 ABC transporter ATPas 82.0 4.1 8.9E-05 42.7 7.3 43 26-68 576-619 (635)
20 PRK11546 zraP zinc resistance 76.6 16 0.00035 31.6 8.0 58 7-68 48-106 (143)
21 COG0216 PrfA Protein chain rel 70.1 47 0.001 32.8 10.2 29 57-85 42-70 (363)
22 KOG0995 Centromere-associated 63.7 83 0.0018 33.1 11.1 68 12-81 220-289 (581)
23 TIGR03545 conserved hypothetic 60.2 1.5E+02 0.0033 31.1 12.6 60 5-69 167-230 (555)
24 PF04912 Dynamitin: Dynamitin 53.9 2.3E+02 0.005 28.0 12.2 83 6-89 243-340 (388)
25 PF10458 Val_tRNA-synt_C: Valy 50.0 37 0.0008 25.0 4.5 49 27-77 13-62 (66)
26 PF03962 Mnd1: Mnd1 family; I 49.7 86 0.0019 28.0 7.7 8 34-41 119-126 (188)
27 KOG0971 Microtubule-associated 49.3 3.5E+02 0.0075 30.5 13.1 21 5-25 227-247 (1243)
28 KOG4796 RNA polymerase II elon 47.9 72 0.0016 33.4 7.6 63 7-72 520-595 (604)
29 PRK03918 chromosome segregatio 46.3 2.9E+02 0.0063 29.9 12.5 17 27-43 565-581 (880)
30 PF05565 Sipho_Gp157: Siphovir 45.9 1.8E+02 0.004 25.2 9.0 48 28-77 4-52 (162)
31 PF08317 Spc7: Spc7 kinetochor 44.6 3E+02 0.0064 26.5 13.0 57 28-85 187-247 (325)
32 smart00150 SPEC Spectrin repea 44.4 1.3E+02 0.0027 22.2 9.7 45 28-72 8-52 (101)
33 PF07851 TMPIT: TMPIT-like pro 43.8 2.5E+02 0.0054 27.6 10.3 42 94-140 66-107 (330)
34 PRK04778 septation ring format 43.4 2.8E+02 0.006 28.9 11.4 17 277-293 546-562 (569)
35 PF12777 MT: Microtubule-bindi 43.4 70 0.0015 31.1 6.6 43 32-76 170-212 (344)
36 PF07303 Occludin_ELL: Occludi 40.6 1.4E+02 0.003 24.2 6.8 37 27-64 31-69 (101)
37 TIGR00634 recN DNA repair prot 40.3 4.4E+02 0.0096 27.3 12.5 24 48-71 298-321 (563)
38 PLN03229 acetyl-coenzyme A car 40.2 3.4E+02 0.0073 29.7 11.4 80 6-85 459-545 (762)
39 PF06160 EzrA: Septation ring 39.4 4.4E+02 0.0095 27.5 12.1 41 6-47 57-97 (560)
40 KOG2991 Splicing regulator [RN 38.0 3.7E+02 0.0081 25.8 12.9 36 27-62 186-221 (330)
41 PF02815 MIR: MIR domain; Int 37.8 51 0.0011 28.9 4.3 35 175-209 124-158 (190)
42 PF05791 Bacillus_HBL: Bacillu 36.5 3E+02 0.0066 24.3 10.6 74 7-85 78-159 (184)
43 PRK03918 chromosome segregatio 35.4 4.4E+02 0.0096 28.5 11.8 30 46-75 261-290 (880)
44 PRK04778 septation ring format 34.3 3.4E+02 0.0073 28.3 10.3 33 28-60 168-203 (569)
45 KOG0727 26S proteasome regulat 34.2 2.2E+02 0.0048 27.6 8.0 113 65-187 29-164 (408)
46 PRK10869 recombination and rep 33.7 5.7E+02 0.012 26.6 12.6 23 49-71 294-316 (553)
47 PRK05431 seryl-tRNA synthetase 33.4 5.1E+02 0.011 26.0 11.4 18 1-18 1-18 (425)
48 COG3890 ERG8 Phosphomevalonate 32.5 1.3E+02 0.0028 29.3 6.2 27 117-143 273-299 (337)
49 PF07426 Dynactin_p22: Dynacti 32.4 3.6E+02 0.0077 23.9 10.2 18 25-42 5-22 (174)
50 TIGR02231 conserved hypothetic 32.2 4E+02 0.0086 27.3 10.3 40 101-140 150-192 (525)
51 PF10303 DUF2408: Protein of u 31.8 2.3E+02 0.005 24.0 7.2 82 24-118 40-127 (134)
52 cd01020 TroA_b Metal binding p 31.5 1.3E+02 0.0028 27.9 6.1 22 42-63 93-114 (264)
53 PRK10869 recombination and rep 31.2 5E+02 0.011 27.1 11.0 28 54-81 309-337 (553)
54 PRK09545 znuA high-affinity zi 31.1 2.1E+02 0.0046 27.3 7.7 19 43-61 144-162 (311)
55 PF06160 EzrA: Septation ring 30.2 5E+02 0.011 27.1 10.8 34 27-60 163-199 (560)
56 KOG2072 Translation initiation 30.2 5.4E+02 0.012 28.7 10.9 78 7-85 682-760 (988)
57 PF14257 DUF4349: Domain of un 29.8 2.4E+02 0.0051 26.1 7.6 61 48-116 122-182 (262)
58 COG1340 Uncharacterized archae 29.2 5.4E+02 0.012 25.0 14.2 58 23-82 105-162 (294)
59 cd01145 TroA_c Periplasmic bin 28.1 1.8E+02 0.0038 25.8 6.2 21 42-62 106-126 (203)
60 COG1579 Zn-ribbon protein, pos 28.1 5.1E+02 0.011 24.3 12.7 61 7-70 43-108 (239)
61 COG0497 RecN ATPase involved i 27.8 6.5E+02 0.014 26.6 10.9 42 29-72 277-318 (557)
62 cd01137 PsaA Metal binding pro 27.2 2.3E+02 0.0049 26.7 7.0 21 42-62 115-135 (287)
63 COG4026 Uncharacterized protei 27.1 4.3E+02 0.0094 24.9 8.5 80 3-89 129-212 (290)
64 PF04420 CHD5: CHD5-like prote 26.2 3.5E+02 0.0077 23.4 7.6 47 23-69 38-84 (161)
65 PTZ00419 valyl-tRNA synthetase 25.8 3E+02 0.0064 30.9 8.6 54 27-81 938-991 (995)
66 TIGR01219 Pmev_kin_ERG8 phosph 25.6 1.5E+02 0.0032 30.4 5.7 28 116-143 383-410 (454)
67 PF13801 Metal_resist: Heavy-m 24.9 3.2E+02 0.007 20.9 8.2 38 28-67 66-103 (125)
68 PRK04863 mukB cell division pr 23.9 6.7E+02 0.015 29.7 11.1 40 6-47 297-336 (1486)
69 PLN02943 aminoacyl-tRNA ligase 23.3 2.8E+02 0.0061 31.0 7.8 54 27-81 898-951 (958)
70 PLN02320 seryl-tRNA synthetase 23.1 8.1E+02 0.018 25.5 10.6 45 22-66 64-108 (502)
71 PF14048 MBD_C: C-terminal dom 23.1 39 0.00085 27.2 0.9 25 201-225 71-95 (96)
72 cd01018 ZntC Metal binding pro 22.9 2.4E+02 0.0052 26.0 6.3 21 42-62 110-130 (266)
73 PF09032 Siah-Interact_N: Siah 22.9 3.2E+02 0.007 21.2 5.9 44 69-117 4-47 (79)
74 cd00552 RaiA RaiA ("ribosome-a 22.5 3.4E+02 0.0075 20.4 6.8 37 191-227 51-88 (93)
75 KOG4519 Phosphomevalonate kina 22.4 3.2E+02 0.0069 27.3 7.0 26 118-143 386-411 (459)
76 KOG1760 Molecular chaperone Pr 22.3 4.9E+02 0.011 22.2 8.8 44 46-89 15-61 (131)
77 smart00472 MIR Domain in ryano 22.0 87 0.0019 21.6 2.5 21 189-209 7-27 (57)
78 KOG3091 Nuclear pore complex, 21.6 6.6E+02 0.014 26.2 9.4 17 28-44 414-430 (508)
79 PRK12798 chemotaxis protein; R 21.5 1.1E+02 0.0023 31.1 3.8 52 4-56 34-87 (421)
80 PF06721 DUF1204: Protein of u 21.0 6.5E+02 0.014 23.0 9.4 38 96-133 138-175 (228)
81 PF04149 DUF397: Domain of unk 20.9 1.6E+02 0.0035 21.1 3.7 18 190-207 16-33 (56)
82 COG0497 RecN ATPase involved i 20.8 3.8E+02 0.0083 28.3 7.7 55 27-81 299-355 (557)
83 COG1196 Smc Chromosome segrega 20.8 1.3E+03 0.028 26.4 13.7 46 95-141 1005-1059(1163)
84 KOG4657 Uncharacterized conser 20.8 2.6E+02 0.0056 26.2 5.8 9 132-140 160-168 (246)
85 PF08829 AlphaC_N: Alpha C pro 20.4 6.4E+02 0.014 22.7 8.3 41 26-68 121-161 (194)
86 COG0803 LraI ABC-type metal io 20.2 3.2E+02 0.007 26.0 6.7 21 41-61 130-150 (303)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-83 Score=599.90 Aligned_cols=276 Identities=30% Similarity=0.468 Sum_probs=261.3
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el 105 (307)
+|+.+..|+.+|+.+|++|++.+|+++++++++|++.|.+++..|.+|++..+++.++.+|+.+ +.|++|.++|.+++
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~--~~D~em~ema~~Ei 85 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE--EKDPEMREMAEEEI 85 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHH
Confidence 4677888999999999999999999999999999999999999999999999999999999876 36999999999999
Q ss_pred HHHHHHHhHHH----HHhcCCCCCCCCCceEEEeeCCCCccc--------------------------------------
Q 021839 106 KELNKALDQFE----LTQLLSGPYDKEGAVISITAGAGGTDA-------------------------------------- 143 (307)
Q Consensus 106 ~~l~~~l~~lE----l~~Lls~p~D~~naileI~aGaGG~ea-------------------------------------- 143 (307)
.++++.+..++ +.+||+||+|.+||||||+||+||+||
T Consensus 86 ~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEi 165 (363)
T COG0216 86 KELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEI 165 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEE
Confidence 99999987775 677889999999999999999999999
Q ss_pred ----------------------------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccC
Q 021839 144 ----------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 189 (307)
Q Consensus 144 ----------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~ 189 (307)
|||+|||+|||+++ +..++.|+|+||+|+|||||||||||||+|+
T Consensus 166 i~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~e-e~~ei~I~~~DlrIDt~RsSGaGGQhVNtTd 244 (363)
T COG0216 166 IASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVE-EVEEIEINPKDLRIDTFRSSGAGGQHVNTTD 244 (363)
T ss_pred EEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCC-cccccccChHHceeeeeecCCCCCCCcCccc
Confidence 99999999999994 3457999999999999999999999999999
Q ss_pred ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCccccc
Q 021839 190 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDV 268 (307)
Q Consensus 190 s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~Dh 268 (307)
|||||||+||||+|.||++||||+||++||+.|++||++.+.+++.++....|+.+++ ++|+++|||||| ||+|||||
T Consensus 245 SAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNf-PQnRVTDH 323 (363)
T COG0216 245 SAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNF-PQNRVTDH 323 (363)
T ss_pred hhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCC-CCCcccch
Confidence 9999999999999999999999999999999999999999999999999999998887 799999999999 99999999
Q ss_pred cccccccCcccccC-CCcHHHHHHHHHHHhhccccccc
Q 021839 269 RTGHETSDIVSVMD-GELEPFIKSYLKYKYSMSLSASD 305 (307)
Q Consensus 269 r~~~~~~~~~~vl~-G~l~~~i~~~~~~~~~~~~~~~~ 305 (307)
|+|+++++|+.||+ |+||++|++++.+...+.|+++.
T Consensus 324 RI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~ 361 (363)
T COG0216 324 RINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELG 361 (363)
T ss_pred hcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 59999999999999888887653
No 2
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=4.2e-81 Score=602.43 Aligned_cols=291 Identities=39% Similarity=0.699 Sum_probs=280.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021839 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVT 82 (307)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~ 82 (307)
++.+++.+++++..+++.++++++++.+.+++++|+..|++|+||+||+++++++++++.|.++++.|..|++..+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~ 80 (364)
T TIGR00020 1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80 (364)
T ss_pred CchHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEEEeeCCCCccc-------------------
Q 021839 83 IVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA------------------- 143 (307)
Q Consensus 83 l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naileI~aGaGG~ea------------------- 143 (307)
+.+|+++ +.|++|+++|..++..+.+.++.+++..||+||+|.++|||+|+||+||+||
T Consensus 81 l~el~~~--e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g 158 (364)
T TIGR00020 81 LLELAVE--EDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRG 158 (364)
T ss_pred HHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999864 3699999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------------cccccccccccCCCCCCCCCCCCCCCc
Q 021839 144 -----------------------------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDL 170 (307)
Q Consensus 144 -----------------------------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl 170 (307)
|||||+|+|+|.+++ .+++.|+++||
T Consensus 159 ~~~evi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~-~~~~~i~~~d~ 237 (364)
T TIGR00020 159 FKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDD-DIDIEIKPEDL 237 (364)
T ss_pred CEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCc-ccceecccccE
Confidence 999999999999854 47889999999
Q ss_pred eeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 021839 171 EISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 250 (307)
Q Consensus 171 ~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~~ 250 (307)
+|+|+|||||||||||||+|||||+|+||||+|.||++|||++||+.|+++|+++|++++.+++.++.+..|+++...+|
T Consensus 238 ~~~~~rssG~GGQ~VNkt~saVri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~r 317 (364)
T TIGR00020 238 RIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGW 317 (364)
T ss_pred EEEEeeCCCCCCccccccceEEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred CCccceeecCCCCccccccccccccCcccccCCCcHHHHHHHHHHH
Q 021839 251 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296 (307)
Q Consensus 251 g~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~ 296 (307)
|++||||||+||+||||||||++++|++.||+|+||+||++++.|.
T Consensus 318 g~~IRtY~~~~~~rVtDhR~g~~~~~l~~vl~G~Ld~~I~a~~~~~ 363 (364)
T TIGR00020 318 GSQIRSYVLHPYSMVKDLRTGYETGNVQAVLDGDIDQFIEAYLKWK 363 (364)
T ss_pred cCCeEEEECCCCCcccccccCCeecChHHHhCCChHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999874
No 3
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=4.4e-80 Score=596.34 Aligned_cols=292 Identities=42% Similarity=0.748 Sum_probs=280.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021839 4 FYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTI 83 (307)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l 83 (307)
+.++++.|+++.++++.++.+++++.+.+++.+|+.++++|+||+||+++++++++++.|.++++.|++|++..++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~ 81 (367)
T PRK00578 2 INEISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEEL 81 (367)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEEEeeCCCCccc--------------------
Q 021839 84 VKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA-------------------- 143 (307)
Q Consensus 84 ~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naileI~aGaGG~ea-------------------- 143 (307)
.+|+++ +.|++|+++|..++..+.+.++.+++..||+||+|.+||||||+||+||+||
T Consensus 82 ~ell~~--e~D~el~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~ 159 (367)
T PRK00578 82 LELAEE--EDDEETLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGF 159 (367)
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999865 3599999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------------------------------cccccccccccCCCCCCCCCCCCCCCce
Q 021839 144 ----------------------------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLE 171 (307)
Q Consensus 144 ----------------------------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~ 171 (307)
|||||+|+|+|++++ ..++.|+++||+
T Consensus 160 ~~evi~~~~~~~gg~ks~~~~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~-~~~~~i~~~dl~ 238 (367)
T PRK00578 160 KVEVLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDD-TIEIEINPKDLR 238 (367)
T ss_pred EEEEEecCCCCCCCeeEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCC-ccccccChhhEE
Confidence 999999999999853 457889999999
Q ss_pred eeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccC
Q 021839 172 ISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWG 251 (307)
Q Consensus 172 i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~~g 251 (307)
++|+|||||||||||||+|+|||+|+||||+|.||++|||++||+.|+++|+++|++++.+++.++....|+.+..++||
T Consensus 239 ~~~~rssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~rg 318 (367)
T PRK00578 239 IDTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEKKEIGWG 318 (367)
T ss_pred EEEeeCCCCCCCcccceeeEEEEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred CccceeecCCCCccccccccccccCcccccCCCcHHHHHHHHHHHhh
Q 021839 252 QQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYS 298 (307)
Q Consensus 252 ~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~~~ 298 (307)
++||||||+||+||||||||++++||++||+|+||+||++++.+..+
T Consensus 319 ~~IRtYn~~p~~rVtDhR~g~~~~~l~~vl~G~ld~~I~~l~~~~~~ 365 (367)
T PRK00578 319 SQIRSYVLHPYQMVKDLRTGYETGNTQAVLDGDLDGFIEAYLRWRAS 365 (367)
T ss_pred CCeEEEECCCCceeeeeccCceecCHHHhhCCChHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999987654
No 4
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3.5e-77 Score=566.98 Aligned_cols=252 Identities=44% Similarity=0.775 Sum_probs=241.3
Q ss_pred hcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 021839 41 AADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120 (307)
Q Consensus 41 l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~L 120 (307)
+++|+||+||++++++++|++.|+++++.|+.|+...+++.++.+|+++ .|++++++|..++..+++.++++++.+|
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~---~d~e~~~~a~~e~~~l~~~l~~~e~~~l 77 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE---EDDEMKKEIISEVKNIKEEIDRFKIETL 77 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999854 3778999999999999999999999999
Q ss_pred CCCCCCCCCceEEEeeCCCCccc---------------------------------------------------------
Q 021839 121 LSGPYDKEGAVISITAGAGGTDA--------------------------------------------------------- 143 (307)
Q Consensus 121 ls~p~D~~naileI~aGaGG~ea--------------------------------------------------------- 143 (307)
|+||+|.++|||||+||+||+||
T Consensus 78 ~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~Gv 157 (325)
T PRK05589 78 LSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGI 157 (325)
T ss_pred CCCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccce
Confidence 99999999999999999999999
Q ss_pred ---------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCc
Q 021839 144 ---------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEE 208 (307)
Q Consensus 144 ---------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~ 208 (307)
|||||+|+|+|++++ ..++.|+++||+|+|+|||||||||||||+|||||+|+||||+|.||++
T Consensus 158 Hrv~r~s~~~~~~rr~ts~a~V~VlP~~~~-~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q~e 236 (325)
T PRK05589 158 HRLVRISPFNANGKRQTSFASVEVLPELTD-DQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 (325)
T ss_pred EEEEEcCCCCCCCCeEeeeEEEEEecCcCc-cccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEECCc
Confidence 999999999999853 4578999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCccceeecCCCCccccccccccccCcccccCCCcHHH
Q 021839 209 RSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPF 288 (307)
Q Consensus 209 Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~~g~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~ 288 (307)
|||++||+.|+++|++||++++.+++.++....|+.+..++||++||||||+||+||||||||++++|++.||+|+||+|
T Consensus 237 RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~p~~rVtDhR~g~~~~~l~~vl~G~Ld~~ 316 (325)
T PRK05589 237 RSQHSNKETAMKMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHRTGVETSNVDSVMDGDIDNF 316 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCceeeECCCCceeeeeccCceecChHHhhCCCHHHH
Confidence 99999999999999999999999999999998998887889999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 021839 289 IKSYLKYK 296 (307)
Q Consensus 289 i~~~~~~~ 296 (307)
|++++.|.
T Consensus 317 I~a~l~~~ 324 (325)
T PRK05589 317 ITQYLKGN 324 (325)
T ss_pred HHHHHhhc
Confidence 99999873
No 5
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3.2e-77 Score=566.48 Aligned_cols=253 Identities=41% Similarity=0.723 Sum_probs=244.4
Q ss_pred hcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 021839 41 AADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120 (307)
Q Consensus 41 l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~L 120 (307)
|+.|+||+|+++|++++++++.|.++++.|.+|.+..+++..+.+|+++ +.|+++.++|.+++..+.+.++++|+.+|
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~--~~d~e~~~~a~~e~~~l~~~l~~le~~~l 78 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKE--EYDEDLHEELESEVKGLIQEMNEYELQLL 78 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999865 35899999999999999999999999999
Q ss_pred CCCCCCCCCceEEEeeCCCCccc---------------------------------------------------------
Q 021839 121 LSGPYDKEGAVISITAGAGGTDA--------------------------------------------------------- 143 (307)
Q Consensus 121 ls~p~D~~naileI~aGaGG~ea--------------------------------------------------------- 143 (307)
|+||+|.++|||||+||+||+||
T Consensus 79 ~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~Gv 158 (326)
T PRK06746 79 LSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGV 158 (326)
T ss_pred cCCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccce
Confidence 99999999999999999999999
Q ss_pred ---------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCc
Q 021839 144 ---------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEE 208 (307)
Q Consensus 144 ---------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~ 208 (307)
|||||+|+|+|++++ .+++.|+++||+|+|+|||||||||||||+|||||+|+||||+|.||++
T Consensus 159 Hrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~-~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q~~ 237 (326)
T PRK06746 159 HRLVRISPFDSSGRRHTSFVSCEVVPEFND-EVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSE 237 (326)
T ss_pred EEEEecCCCCCCCCeEeeEEEEEEecCcCC-ccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEECCC
Confidence 999999999999853 5789999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCccceeecCCCCccccccccccccCcccccCCCcHHH
Q 021839 209 RSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPF 288 (307)
Q Consensus 209 Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~~g~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~ 288 (307)
|||++||+.|+++|++||++++.+++.++....|+.+++++||++||||||+||+||||||||++++|+++||+|+||+|
T Consensus 238 RSQ~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtYnf~p~~rVtDhR~~~~~~~l~~vl~G~ld~~ 317 (326)
T PRK06746 238 RSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPF 317 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCCeEEEECCCCceeeeeecCceecChHHhhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 021839 289 IKSYLKYK 296 (307)
Q Consensus 289 i~~~~~~~ 296 (307)
|++++.|.
T Consensus 318 I~~~~~~~ 325 (326)
T PRK06746 318 IDAYLRSR 325 (326)
T ss_pred HHHHHHcc
Confidence 99999864
No 6
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=4e-77 Score=568.29 Aligned_cols=256 Identities=37% Similarity=0.674 Sum_probs=244.4
Q ss_pred HhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHh
Q 021839 40 KAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQ 119 (307)
Q Consensus 40 ~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~ 119 (307)
++++|+||+||+++++++++++.|+++++.|.+|....+++..+.+|+++ +.|++|+++|..++..+.+.++++++..
T Consensus 2 ~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~--e~D~el~~~a~~e~~~l~~~l~~~el~~ 79 (339)
T PRK07342 2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEE--EGDKSIVEDAEKTIRDLKDEIDRRQIDA 79 (339)
T ss_pred cccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999864 3599999999999999999999999999
Q ss_pred cCCCCCCCCCceEEEeeCCCCccc--------------------------------------------------------
Q 021839 120 LLSGPYDKEGAVISITAGAGGTDA-------------------------------------------------------- 143 (307)
Q Consensus 120 Lls~p~D~~naileI~aGaGG~ea-------------------------------------------------------- 143 (307)
||.||+|.++|+|+|+||+||+||
T Consensus 80 lL~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~G 159 (339)
T PRK07342 80 LLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESG 159 (339)
T ss_pred HhCCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccc
Confidence 999999999999999999999999
Q ss_pred ----------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecC
Q 021839 144 ----------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTE 207 (307)
Q Consensus 144 ----------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~ 207 (307)
|||||+|+|+|.+++ .+++.|+++|++|+|+|||||||||||||+|||||+|+||||+|.||+
T Consensus 160 vHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~-~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~~~ 238 (339)
T PRK07342 160 VHRLVRISPYDSNARRHTSFASIWVYPVIDD-NIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQ 238 (339)
T ss_pred eeEEEecCCCCCCCCeEeEEEEEEEEcCCCc-ccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEECC
Confidence 999999999999853 467899999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCccceeecCCCCccccccccccccCcccccCCCcHH
Q 021839 208 ERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEP 287 (307)
Q Consensus 208 ~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~~g~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~ 287 (307)
+|||++||+.|+++|+++|++++.+++..+.+..+..+..+.||+|||||||+||+||||||||++++|+++||+|+||+
T Consensus 239 eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i~~g~~IRtY~~~p~~rVtDhRtg~~~~~l~~vl~G~Ld~ 318 (339)
T PRK07342 239 ERSQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDIGWGHQIRSYVLQPYQLVKDLRTGVESTNPQDVLDGDLNE 318 (339)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCcCCccCCCCceeeeeccCceecChHHhhCCCHHH
Confidence 99999999999999999999999999988888888777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 021839 288 FIKSYLKYKYS 298 (307)
Q Consensus 288 ~i~~~~~~~~~ 298 (307)
||++++.|...
T Consensus 319 ~I~a~l~~~~~ 329 (339)
T PRK07342 319 FMEAALAHRIS 329 (339)
T ss_pred HHHHHHHHHhc
Confidence 99999998654
No 7
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=2e-75 Score=561.96 Aligned_cols=273 Identities=30% Similarity=0.496 Sum_probs=254.2
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el 105 (307)
.++.+..++.+|+..+++|+||+||+++++++++++.|+++++.|..|++...++.++.+|+++ .|++|+++|.+++
T Consensus 8 ~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~---~D~e~~~~a~~e~ 84 (360)
T TIGR00019 8 KLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE---SDPEMREMAKEEL 84 (360)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHH
Confidence 3577888999999999999999999999999999999999999999999999999999999864 4899999999999
Q ss_pred HHHHHHHhHHHHH----hcCCCCCCCCCceEEEeeCCCCccc--------------------------------------
Q 021839 106 KELNKALDQFELT----QLLSGPYDKEGAVISITAGAGGTDA-------------------------------------- 143 (307)
Q Consensus 106 ~~l~~~l~~lEl~----~Lls~p~D~~naileI~aGaGG~ea-------------------------------------- 143 (307)
..+.+.++.++.. +||+||+|.++|+|+|+||+||+||
T Consensus 85 ~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa 164 (360)
T TIGR00019 85 EELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEV 164 (360)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcceEE
Confidence 9999999998854 5789999999999999999999999
Q ss_pred ----------------------------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccC
Q 021839 144 ----------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 189 (307)
Q Consensus 144 ----------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~ 189 (307)
|||||+|+|+|.+++ +++.|+++||+|+|+|||||||||||||+
T Consensus 165 ~l~i~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~--~~~~i~~~dl~~~~~RssG~GGQ~VNkt~ 242 (360)
T TIGR00019 165 IAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEE--VEVDINPADLRIDTFRSSGAGGQHVNTTD 242 (360)
T ss_pred EEEEecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCc--cccccCcccEEEEEEECCCCCCCCcCcee
Confidence 899999999999853 57899999999999999999999999999
Q ss_pred ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCccccc
Q 021839 190 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDV 268 (307)
Q Consensus 190 s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~Dh 268 (307)
|||||+|+||||+|.||++|||++||..|+++|+++|++...+++.++....|+.+.. .+||+||||||| |+++||||
T Consensus 243 SaVrl~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~-~~~rV~Dh 321 (360)
T TIGR00019 243 SAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNF-PQNRVTDH 321 (360)
T ss_pred eeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEEC-CCCeeeee
Confidence 9999999999999999999999999999999999999999998787777777766665 689999999999 88999999
Q ss_pred cccccccCcccccCCCcHHHHHHHHHHHhhcccccc
Q 021839 269 RTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSAS 304 (307)
Q Consensus 269 r~~~~~~~~~~vl~G~l~~~i~~~~~~~~~~~~~~~ 304 (307)
|||++++|+++||+|+||+||++++.+...+.+..+
T Consensus 322 Rtg~~~~~l~~vl~G~Ld~~I~~~l~~~~~~~l~~~ 357 (360)
T TIGR00019 322 RINLTLYKLDEVLEGDLDELIEALIAEDQAQQLAAL 357 (360)
T ss_pred ccCCeEcChHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887766543
No 8
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=3.1e-74 Score=553.89 Aligned_cols=274 Identities=31% Similarity=0.487 Sum_probs=254.6
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el 105 (307)
.++.+.+++++|++.+++|+||+||+++++++++++.|+++++.|..+.....++.++.+|+.+ ++|+++++++.+++
T Consensus 7 ~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~--e~D~~~~~~~~~e~ 84 (359)
T PRK00591 7 KLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE--ESDPEMREMAKEEL 84 (359)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHH
Confidence 3577889999999999999999999999999999999999999999999999999999999864 35999999999999
Q ss_pred HHHHHHHhHHH--HH--hcCCCCCCCCCceEEEeeCCCCccc--------------------------------------
Q 021839 106 KELNKALDQFE--LT--QLLSGPYDKEGAVISITAGAGGTDA-------------------------------------- 143 (307)
Q Consensus 106 ~~l~~~l~~lE--l~--~Lls~p~D~~naileI~aGaGG~ea-------------------------------------- 143 (307)
..+...++.++ +. +||+||+|.++|||+|+||+||+|+
T Consensus 85 ~~l~~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa 164 (359)
T PRK00591 85 KELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEV 164 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCceeEE
Confidence 99999999988 34 5789999999999999999999999
Q ss_pred ----------------------------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccC
Q 021839 144 ----------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 189 (307)
Q Consensus 144 ----------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~ 189 (307)
|||||+|+|+|.+++ .++.|+++||+|+|+|||||||||||||+
T Consensus 165 ~l~i~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~--~~~~i~~~dl~~~~~RssG~GGQ~VNkt~ 242 (359)
T PRK00591 165 IAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE--VEVEINPKDLRIDTFRSSGAGGQHVNTTD 242 (359)
T ss_pred EEEEecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCc--cccccCcccEEEEEEECCCCCCCCcccee
Confidence 899999999999854 58899999999999999999999999999
Q ss_pred ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCccccc
Q 021839 190 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDV 268 (307)
Q Consensus 190 s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~Dh 268 (307)
|||||+|+||||+|.|+++|||++||+.|+++|+++|++.+.+++.++.+..|+.++. ..||++||||||+ +++||||
T Consensus 243 saVrl~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f~-~~~V~Dh 321 (359)
T PRK00591 243 SAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNFP-QGRVTDH 321 (359)
T ss_pred eeEEEEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECC-CCeeeee
Confidence 9999999999999999999999999999999999999999999999998888876665 5788999999995 5889999
Q ss_pred cccccccCcccccCCCcHHHHHHHHHHHhhcccccc
Q 021839 269 RTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSAS 304 (307)
Q Consensus 269 r~~~~~~~~~~vl~G~l~~~i~~~~~~~~~~~~~~~ 304 (307)
|||++++|+++||+|+||+||++|+.+...+.|..+
T Consensus 322 Rtg~~~~~l~~vl~G~Ld~fI~~~l~~~~~~~l~~~ 357 (359)
T PRK00591 322 RINLTLYKLDEVMEGDLDELIDALIAEDQAEKLAAL 357 (359)
T ss_pred ccCCEEcChHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999887766543
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=6.3e-71 Score=520.02 Aligned_cols=233 Identities=35% Similarity=0.570 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEEEeeCCCCcc
Q 021839 63 VKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTD 142 (307)
Q Consensus 63 L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naileI~aGaGG~e 142 (307)
|+.+++.|..+...++|+..+++|+++ +.|+++.+++.+++..+++.++.+|+..||+||+|.+||||+|+||+||+|
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~--~~d~e~~~~~~~e~~~l~~~~~~le~~~lL~~~~D~~~a~leI~aG~GG~E 79 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAES--EQDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTE 79 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcEEEEECCCCcHH
Confidence 678899999999999999999999976 359999999999999999999999999999999999999999999999999
Q ss_pred c------------------------------------------------------------------------ccccccc
Q 021839 143 A------------------------------------------------------------------------QTSFSGA 150 (307)
Q Consensus 143 a------------------------------------------------------------------------hTs~~~v 150 (307)
| |||||+|
T Consensus 80 a~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfasV 159 (313)
T PRK08787 80 AQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSV 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeEEE
Confidence 9 9999999
Q ss_pred ccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHH
Q 021839 151 EVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIA 230 (307)
Q Consensus 151 ~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~ 230 (307)
+|+|+++ +++++.|+++||+|+|+|||||||||||||+|||||+|+||||+|.||++|||++||+.|+++|+++|++++
T Consensus 160 ~V~P~~~-~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~~ 238 (313)
T PRK08787 160 FVSPEVD-DNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELE 238 (313)
T ss_pred EEecCcC-cccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 357889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccccCCccceeecCCCCccccccccccccCcccccCCCcHHHHHHHHHHHhhc
Q 021839 231 EEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSM 299 (307)
Q Consensus 231 ~~~~~~~~~~~r~~~~~~~~g~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~~~~ 299 (307)
.+++.++....++.+..+.||+|||||||+| ++|||||||++++|+++||+|+||+||++++.|..+.
T Consensus 239 ~e~~~~~~~~~~~~k~~i~~g~qIRtY~f~~-~~V~DhRtg~~~~~l~~vldG~ld~fI~a~l~~~~~~ 306 (313)
T PRK08787 239 VQKRNAEKDALEATKSDIGWGSQIRNYVLDQ-SRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGLAA 306 (313)
T ss_pred HHHHHHHHHHHhhhhhhCcccccccceeCCC-CcceeeccCceEcChhHhhCCChHHHHHHHHHHHHhc
Confidence 9999998888887777789999999999987 5799999999999999999999999999999987653
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-63 Score=474.46 Aligned_cols=255 Identities=40% Similarity=0.625 Sum_probs=217.7
Q ss_pred HHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHH----HHHHH
Q 021839 35 AELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII----KELNK 110 (307)
Q Consensus 35 ~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el----~~l~~ 110 (307)
...+..+.+.++|+|+. ++...+..|.+....+..+.. ++.|... .+|++|.++|.+++ .+++.
T Consensus 51 ~~~~~~~~~~~~~~~~~---~l~~~~~~l~~~~~~~~~~~~----lk~l~~~-----~e~e~~~~~a~~E~~~~~~~i~~ 118 (386)
T KOG2726|consen 51 KVQEAASNDSDLWDDPA---ELDEVLNALSDRMKLVRELKS----LKSLIKE-----GEDEDMDELAEEEAEEISKEIER 118 (386)
T ss_pred hhHHHhhchhhhhhhhH---HHHHHHHHHHHHHHHHHHhhh----HHHHHhh-----cccHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999986 444444444444444444333 4444433 23666766666665 55555
Q ss_pred HHhHHHHHhcCCCCCCCCCceEEEeeCCCCccc-----------------------------------------------
Q 021839 111 ALDQFELTQLLSGPYDKEGAVISITAGAGGTDA----------------------------------------------- 143 (307)
Q Consensus 111 ~l~~lEl~~Lls~p~D~~naileI~aGaGG~ea----------------------------------------------- 143 (307)
.+..+++.+||++|+|.++|||||+|||||+||
T Consensus 119 ~~~~l~~~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~a 198 (386)
T KOG2726|consen 119 SLHELELSLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESA 198 (386)
T ss_pred HHHHHHHHhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccch
Confidence 667788999999999999999999999999999
Q ss_pred -------------------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecC
Q 021839 144 -------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIP 198 (307)
Q Consensus 144 -------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~p 198 (307)
||||++|.|+|.+..+++.+.|+++|++|+|+|||||||||||||+|||||+|+|
T Consensus 199 yg~l~~E~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiP 278 (386)
T KOG2726|consen 199 YGYLKFEAGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIP 278 (386)
T ss_pred hheeeccCcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCcccccccccceEEEeec
Confidence 9999999999999656788999999999999999999999999999999999999
Q ss_pred CeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCccccccccccccCc
Q 021839 199 TGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDVRTGHETSDI 277 (307)
Q Consensus 199 tgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~Dhr~~~~~~~~ 277 (307)
|||+|+||++|||++||+.|+.+|+++|++.+..+...+.+..|+.+++ ..|+++||||||+| .+|+|||++++.+++
T Consensus 279 TGIvv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~~q-~rv~D~r~~~~~~d~ 357 (386)
T KOG2726|consen 279 TGIVVECQEERSQHKNRALALKRLRAKLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNFKQ-DRVTDHRIGLESHDL 357 (386)
T ss_pred CceEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHhhcccCchhceeecccCc-cchhhhhhcccccch
Confidence 9999999999999999999999999999999999999999888988887 69999999999955 559999999999999
Q ss_pred ccccCCCcHHHHHHHHHHHhhcccc
Q 021839 278 VSVMDGELEPFIKSYLKYKYSMSLS 302 (307)
Q Consensus 278 ~~vl~G~l~~~i~~~~~~~~~~~~~ 302 (307)
.+||+|+||+||++++.+...+.+.
T Consensus 358 ~~~l~G~Ld~li~~~~~~~~~~~~~ 382 (386)
T KOG2726|consen 358 ESFLDGNLDELIEALLSLRREEDLA 382 (386)
T ss_pred HHHHhccHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999887765543
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-53 Score=384.16 Aligned_cols=152 Identities=47% Similarity=0.780 Sum_probs=148.0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHH
Q 021839 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLK 223 (307)
Q Consensus 144 hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~ 223 (307)
||||++|.|+|.++ +++++.|++.||+|+|+|||||||||||||+|||||||+||||+|.||.+|||++|++.|+..|+
T Consensus 87 ~tsf~~v~v~p~~~-~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a~~~l~ 165 (239)
T COG1186 87 HTSFASVEVFPELD-ISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALARKMLK 165 (239)
T ss_pred ccceeeeeecCCCC-cccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccCCccceeecCCCCccccccccccccCcccccCCCcHHHHHHHHHHH
Q 021839 224 AKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296 (307)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~r~~~~~~~~g~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~ 296 (307)
.+|++.+.+.+.++.++.+..+..++||+|||+|+|+||++||||||+++..+.+.||+|++|.||++++.+.
T Consensus 166 ~kL~~~~~~~Rsqe~n~~~a~~k~i~wg~qirsyv~~p~~~vKd~Rt~~E~~~~~~v~dg~~~~~~~~~l~~~ 238 (239)
T COG1186 166 GKLYILAQEKRSQEKNRERALKKLIGWGNQIRSYVLDPYQPTKDLRTGVERRNKSKVLDGDKDGFIKAYLKWD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCCccccccccccceeeccHHHhhhhhHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764
No 12
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=2.2e-41 Score=302.99 Aligned_cols=111 Identities=32% Similarity=0.439 Sum_probs=105.0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHH
Q 021839 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLK 223 (307)
Q Consensus 144 hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~ 223 (307)
||||++|.|+|. ++.|+++||+++|+|||||||||||||+|+|||+|+||||+|.||++|||++||+.|+++|+
T Consensus 88 ~ts~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~ 161 (200)
T TIGR03072 88 KNWFIGVQRFSA------SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLATLLLA 161 (200)
T ss_pred eEEEEEEEEecC------ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHHHHHHHHH
Confidence 799999999984 24689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccCCccceeecC
Q 021839 224 AKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFH 260 (307)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~r~~~~~~~~g~~iRtY~~~ 260 (307)
++|++++.+++.+..+..|.++...+||+|||||++.
T Consensus 162 ~~l~~~~~~~~~~~~~~~r~~~~~~~Rg~~iRty~~~ 198 (200)
T TIGR03072 162 VRLADLQQEQAAALRAERRTAHHQIERGNPVRVFKGE 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCceEeeeCC
Confidence 9999999998888888889999889999999999984
No 13
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=1.1e-40 Score=298.65 Aligned_cols=110 Identities=33% Similarity=0.372 Sum_probs=104.0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHH
Q 021839 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLK 223 (307)
Q Consensus 144 hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~ 223 (307)
||||++|+|+|. ++.|+++||+++|+|||||||||||||+|+|||+|+||||+|.||++|||++||+.|+++|+
T Consensus 89 ~~s~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~ 162 (200)
T PRK08179 89 KNWFVGIGRFSA------DEEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIA 162 (200)
T ss_pred eEEEEEEEEeCC------cCccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 799999999965 23689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccCCccceeec
Q 021839 224 AKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVF 259 (307)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~r~~~~~~~~g~~iRtY~~ 259 (307)
++|++++.+++.++.+..|+++...+||+|||||..
T Consensus 163 ~~L~~~~~~~~~~~~~~~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 163 WKLEQQQQEQSAALKSQRRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCceEeeec
Confidence 999999999999899999999988999999999975
No 14
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=100.00 E-value=9.1e-37 Score=251.53 Aligned_cols=109 Identities=50% Similarity=0.775 Sum_probs=100.7
Q ss_pred CCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021839 160 SMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIK 239 (307)
Q Consensus 160 ~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~ 239 (307)
..++.|+++||+++|+|||||||||||||+|+|+|+|+||||+|.|+++|||++|++.|+++|+++|.....++......
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~ 83 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTR 83 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999988777777777
Q ss_pred HHhcCccc-cccCCccceeecCCCCcccccc
Q 021839 240 QIRGDAVK-AEWGQQIRNYVFHPYKLVKDVR 269 (307)
Q Consensus 240 ~~r~~~~~-~~~g~~iRtY~~~~~~~v~Dhr 269 (307)
..++.+.. ..|+++||+|+| |+++|||||
T Consensus 84 ~~~~~~~~~~~~~~~iR~y~~-~~~~vk~~R 113 (113)
T PF00472_consen 84 EIRKSQVKRLERKKKIRTYNF-PRSRVKDHR 113 (113)
T ss_dssp TTTTTSCCCSSTTSEEEEEET-TTTEEEETT
T ss_pred HHHHHHHhHHhhhcceecccC-ChhhcccCC
Confidence 77777776 799999999999 999999998
No 15
>PRK09256 hypothetical protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=173.01 Aligned_cols=69 Identities=46% Similarity=0.651 Sum_probs=63.6
Q ss_pred CCCCCCCCCceeeEeeeCCCCCccccccCceEEEEe------cC-----------------Ce-eEEEecCcccHHHHHH
Q 021839 161 MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH------IP-----------------TG-VTVRCTEERSQLANKI 216 (307)
Q Consensus 161 ~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h------~p-----------------tg-i~v~~~~~Rsq~~Nr~ 216 (307)
.++.||..++++.|+|||||||||||||+|+|+|+| +| +| |+|.|+++|||++|++
T Consensus 6 ~~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~ 85 (138)
T PRK09256 6 RRLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNRE 85 (138)
T ss_pred ccCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHH
Confidence 356799999999999999999999999999999995 77 35 9999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021839 217 KALSRLKAKLLVI 229 (307)
Q Consensus 217 ~a~~~L~~~l~~~ 229 (307)
.|+++|.+.|...
T Consensus 86 ~al~kL~~~i~~~ 98 (138)
T PRK09256 86 DALERLVALIREA 98 (138)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 16
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.4e-16 Score=134.94 Aligned_cols=70 Identities=39% Similarity=0.585 Sum_probs=62.3
Q ss_pred CCCCCCCCCceeeEeeeCCCCCccccccCceEEEE-------ecC------------------CeeEEEecCcccHHHHH
Q 021839 161 MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRIT-------HIP------------------TGVTVRCTEERSQLANK 215 (307)
Q Consensus 161 ~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~-------h~p------------------tgi~v~~~~~Rsq~~Nr 215 (307)
....||.+.|.+.|.||||||||||||++|+|.++ ||| .-|++.++.+|||+.|.
T Consensus 33 ~~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~Ni 112 (172)
T KOG3429|consen 33 FKGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNI 112 (172)
T ss_pred cCCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccH
Confidence 45568999999999999999999999999999997 455 13899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 021839 216 IKALSRLKAKLLVIA 230 (307)
Q Consensus 216 ~~a~~~L~~~l~~~~ 230 (307)
++|+++|++.|++.+
T Consensus 113 aDcleKlr~~I~~~~ 127 (172)
T KOG3429|consen 113 ADCLEKLRDIIRAAE 127 (172)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998743
No 17
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=99.01 E-value=3.5e-10 Score=93.60 Aligned_cols=53 Identities=38% Similarity=0.586 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhHHHHH----hcCCCCCCCCCceEEEeeCCCCcccc
Q 021839 92 STDAGLLEEAASIIKELNKALDQFELT----QLLSGPYDKEGAVISITAGAGGTDAQ 144 (307)
Q Consensus 92 ~~D~el~~ea~~el~~l~~~l~~lEl~----~Lls~p~D~~naileI~aGaGG~eah 144 (307)
++|+++++++.+++..+...++.++.+ ++|++|+|.++|||||+||+||+||+
T Consensus 6 ~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~ 62 (115)
T PF03462_consen 6 EEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEAC 62 (115)
T ss_dssp CT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHH
Confidence 479999999999999999999998865 88899999999999999999999993
No 18
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=89.97 E-value=1.9 Score=45.40 Aligned_cols=44 Identities=30% Similarity=0.438 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHhcCCccccc--HHHHHHHHHHHHhHHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDN--RAEAQETLQALTDVKDKINL 69 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD--~~ka~~l~kEls~L~~~v~~ 69 (307)
.++.+++++++|++.|++|++++| .++...+.+++..++..++.
T Consensus 571 ~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (638)
T PRK10636 571 EMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEE 616 (638)
T ss_pred HHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 368888999999999999999977 44889999999888866543
No 19
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=82.00 E-value=4.1 Score=42.75 Aligned_cols=43 Identities=28% Similarity=0.523 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHH-HHHHHHHHHHhHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDNRA-EAQETLQALTDVKDKIN 68 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD~~-ka~~l~kEls~L~~~v~ 68 (307)
.++.+++++++|+++|++|++++|+. +++++.+++..++..++
T Consensus 576 ~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (635)
T PRK11147 576 LLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELE 619 (635)
T ss_pred HHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999998865 89999999999886544
No 20
>PRK11546 zraP zinc resistance protein; Provisional
Probab=76.57 E-value=16 Score=31.59 Aligned_cols=58 Identities=9% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHH
Q 021839 7 LRKDVEAASDRVEEIRASAGL-QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKIN 68 (307)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~l-e~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~ 68 (307)
-...++.+.+.+. .....| +++..+..||+.+++.|. +|+++..++.+|.++|...+.
T Consensus 48 QQa~~q~I~~~f~--~~t~~LRqqL~aKr~ELnALl~~~~--pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 48 QQAAWQKIHNDFY--AQTSALRQQLVSKRYEYNALLTANP--PDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 3445555555553 233333 678888999999999987 599999999999999987554
No 21
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=70.14 E-value=47 Score=32.83 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=15.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 021839 57 LQALTDVKDKINLLTDFKTKMDDAVTIVK 85 (307)
Q Consensus 57 ~kEls~L~~~v~~~~~l~~~~ed~~~l~e 85 (307)
..++..+......|+++...+++++.|+.
T Consensus 42 ~a~l~~iv~~~~~~~~~~~~l~~a~~~l~ 70 (363)
T COG0216 42 YAELEPIVEKYREYKKAQEDLEDAKEMLA 70 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555544
No 22
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.69 E-value=83 Score=33.06 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHh--ccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021839 12 EAASDRVEEIRA--SAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAV 81 (307)
Q Consensus 12 ~~~~~~~~~~~~--~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~ 81 (307)
+++.-++..+.. +..++.+++.-.+|+++++ ..--+|.+-..+-++.++|++.+..|..+....+.-.
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~--e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMIN--EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 344555544443 4567888999999999888 5555677777777888889999999999877666543
No 23
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=60.22 E-value=1.5e+02 Score=31.05 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHH
Q 021839 5 YNLRKDVEAASDRVEEIRASA----GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL 69 (307)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l----~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~ 69 (307)
.++++.+++...+|......+ +++..++|+++|... -..+|...++..+++..|+..+..
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~-----~ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK-----DIKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888777777 899999999999984 346777777777777766666554
No 24
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.87 E-value=2.3e+02 Score=27.95 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh-----cCCcccccHHHHHHH---HHHHHhHHH-------HHHHH
Q 021839 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKA-----ADSSFWDNRAEAQET---LQALTDVKD-------KINLL 70 (307)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l-----~dP~fWdD~~ka~~l---~kEls~L~~-------~v~~~ 70 (307)
.+-..+..|..++..| ....|+.+..|+..|..++ .....+.|...-.+| +.-+..+.. +|+++
T Consensus 243 ~l~~~l~~L~~~lslL-~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL 321 (388)
T PF04912_consen 243 PLLPALNELERQLSLL-DPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERL 321 (388)
T ss_pred hHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4556788888888766 4567888888888777766 222333443333343 333333222 24455
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 021839 71 TDFKTKMDDAVTIVKLTEE 89 (307)
Q Consensus 71 ~~l~~~~ed~~~l~eL~~e 89 (307)
+.|.....++..+...+..
T Consensus 322 ~tL~~lH~~a~~~~~~l~~ 340 (388)
T PF04912_consen 322 KTLKSLHEEAAEFSQTLSE 340 (388)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554433
No 25
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=49.98 E-value=37 Score=25.01 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhcCCccccc-HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021839 27 LQQLEKELAELEMKAADSSFWDN-RAEAQETLQALTDVKDKINLLTDFKTKM 77 (307)
Q Consensus 27 le~l~~r~~eLe~~l~dP~fWdD-~~ka~~l~kEls~L~~~v~~~~~l~~~~ 77 (307)
++.++..+..++..|++|+|-.. |..- +.++...+...-..+..+...+
T Consensus 13 l~kl~~~i~~~~~kL~n~~F~~kAP~eV--ve~er~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 13 LEKLEKEIERLEKKLSNENFVEKAPEEV--VEKEREKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHCSTTHHHHS-CCH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccccCCHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999866 4322 3344444444444444444333
No 26
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.75 E-value=86 Score=28.05 Aligned_cols=8 Identities=38% Similarity=0.459 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 021839 34 LAELEMKA 41 (307)
Q Consensus 34 ~~eLe~~l 41 (307)
++.|..++
T Consensus 119 ~~~l~~el 126 (188)
T PF03962_consen 119 LKELKKEL 126 (188)
T ss_pred HHHHHHHH
Confidence 33333333
No 27
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.29 E-value=3.5e+02 Score=30.51 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcc
Q 021839 5 YNLRKDVEAASDRVEEIRASA 25 (307)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l 25 (307)
.+++..+.+|.++++.++.--
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR 247 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKR 247 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 357888889998888776443
No 28
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=47.93 E-value=72 Score=33.36 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhccC---------H----HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 021839 7 LRKDVEAASDRVEEIRASAG---------L----QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (307)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~---------l----e~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~ 72 (307)
+-.+++....||..|..-|. + .++..+|+.++ .||+|..+..+..-+-.+|+.|+..|..|++
T Consensus 520 Lharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~---~dp~y~eeK~RceYLhsKLaHIK~lI~efDk 595 (604)
T KOG4796|consen 520 LHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIR---KDPNYMEEKQRCEYLHSKLAHIKTLIGEFDK 595 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhh---cCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444 2 23333444444 6777777777777777777777777766665
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=46.31 E-value=2.9e+02 Score=29.86 Aligned_cols=17 Identities=47% Similarity=0.618 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021839 27 LQQLEKELAELEMKAAD 43 (307)
Q Consensus 27 le~l~~r~~eLe~~l~d 43 (307)
+..+..++.+++..+..
T Consensus 565 ~~~~~~~~~~~~~~l~~ 581 (880)
T PRK03918 565 LDELEEELAELLKELEE 581 (880)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444455555555543
No 30
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=45.86 E-value=1.8e+02 Score=25.16 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Q 021839 28 QQLEKELAELEMKAADSSFWDNRAEAQETLQA-LTDVKDKINLLTDFKTKM 77 (307)
Q Consensus 28 e~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kE-ls~L~~~v~~~~~l~~~~ 77 (307)
-.+...+..|.+.+.+++ .|+......+.. -..+..+++.|-.+-+..
T Consensus 4 Yel~~~~~~l~~~~e~~~--~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ 52 (162)
T PF05565_consen 4 YELTDEYLELLELLEEGD--LDEEAIADTLESIEDEIEEKADNIAKVIKNL 52 (162)
T ss_pred HHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555554444 233333333333 333444445444443333
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.58 E-value=3e+02 Score=26.53 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHh
Q 021839 28 QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKIN----LLTDFKTKMDDAVTIVK 85 (307)
Q Consensus 28 e~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~----~~~~l~~~~ed~~~l~e 85 (307)
..+..++..|......++. -|+.+...+-.++..+...+. ...+++.....+..-++
T Consensus 187 ~~L~~e~~~Lk~~~~e~~~-~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 187 AELEEELENLKQLVEEIES-CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666555543 478888888888888888888 45555555555544433
No 32
>smart00150 SPEC Spectrin repeats.
Probab=44.40 E-value=1.3e+02 Score=22.19 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 021839 28 QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (307)
Q Consensus 28 e~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~ 72 (307)
..+..-+.+.+..+.++++=.|+..+....+++..+...+.....
T Consensus 8 ~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~ 52 (101)
T smart00150 8 DELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEE 52 (101)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344445666666777766668999999999999999888876555
No 33
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=43.85 E-value=2.5e+02 Score=27.64 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEEEeeCCCC
Q 021839 94 DAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGG 140 (307)
Q Consensus 94 D~el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naileI~aGaGG 140 (307)
+++..+.+.+++.+.+..+.+.| ..|+.+ ++.||.+.=|.=-
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~DmE--a~LPkk---NGlyL~liLGnVN 107 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLFDME--AFLPKK---NGLYLRLILGNVN 107 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH--hhCCCC---CCcccceeccccc
Confidence 55667777778888887777777 333333 7788888777433
No 34
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.43 E-value=2.8e+02 Score=28.94 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=7.6
Q ss_pred cccccCCCcHHHHHHHH
Q 021839 277 IVSVMDGELEPFIKSYL 293 (307)
Q Consensus 277 ~~~vl~G~l~~~i~~~~ 293 (307)
|+.|=-|-..-|...|.
T Consensus 546 lE~vePG~~~ri~~~y~ 562 (569)
T PRK04778 546 LEKVEPGVTKRIEDSYE 562 (569)
T ss_pred HHhhCCcHHHHHHHHHH
Confidence 34443444444444443
No 35
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=43.38 E-value=70 Score=31.12 Aligned_cols=43 Identities=9% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021839 32 KELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTK 76 (307)
Q Consensus 32 ~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~ 76 (307)
..+..|..-+.+|+| +|+.+.+.++-.+.|-.||.+...|..-
T Consensus 170 ~~~~~l~~~~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v 212 (344)
T PF12777_consen 170 ATIKKLKKYLKNPDF--NPEKVRKASKAAGSLCKWVRAMVKYYEV 212 (344)
T ss_dssp HHHHHHHCTTTSTTS--SHHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--CHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 346778889999999 9999999999999999999987776543
No 36
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=40.55 E-value=1.4e+02 Score=24.15 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhc--CCcccccHHHHHHHHHHHHhHH
Q 021839 27 LQQLEKELAELEMKAA--DSSFWDNRAEAQETLQALTDVK 64 (307)
Q Consensus 27 le~l~~r~~eLe~~l~--dP~fWdD~~ka~~l~kEls~L~ 64 (307)
++.+..+|.+|+.+|. .|+-|.-..-+ +|..|+..++
T Consensus 31 v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~K 69 (101)
T PF07303_consen 31 VDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHH
Confidence 4555556666666662 22222222222 4446666664
No 37
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.27 E-value=4.4e+02 Score=27.31 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHH
Q 021839 48 DNRAEAQETLQALTDVKDKINLLT 71 (307)
Q Consensus 48 dD~~ka~~l~kEls~L~~~v~~~~ 71 (307)
.||.....+..+++.+.....+|.
T Consensus 298 ~dp~~L~ele~RL~~l~~LkrKyg 321 (563)
T TIGR00634 298 FDPERLNEIEERLAQIKRLKRKYG 321 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhC
Confidence 388888888888887777666654
No 38
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=40.19 E-value=3.4e+02 Score=29.72 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHH-HHHHhccCHHHHHHHHHHHHHHhcCCcc---cc---cHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021839 6 NLRKDVEAASDRV-EEIRASAGLQQLEKELAELEMKAADSSF---WD---NRAEAQETLQALTDVKDKINLLTDFKTKMD 78 (307)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~l~le~l~~r~~eLe~~l~dP~f---Wd---D~~ka~~l~kEls~L~~~v~~~~~l~~~~e 78 (307)
.+.+.|+.|.+.| ..+......-.++.++..|.++++.-+- .- =.+++-++.+|.+.--..+-.|-.++++++
T Consensus 459 ~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle 538 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD 538 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 4567788888877 5677888889999999999977776431 01 123455555555544444445666666666
Q ss_pred HHHHHHh
Q 021839 79 DAVTIVK 85 (307)
Q Consensus 79 d~~~l~e 85 (307)
-+.+...
T Consensus 539 ~Lk~~~~ 545 (762)
T PLN03229 539 MLNEFSR 545 (762)
T ss_pred HHHHHHH
Confidence 5555543
No 39
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.41 E-value=4.4e+02 Score=27.52 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCccc
Q 021839 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFW 47 (307)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fW 47 (307)
+....++.....|..+- ...+..+...+.+.+.....-.|+
T Consensus 57 qt~~~fe~w~~~w~~i~-~~~~~~ie~~L~~ae~~~~~~rf~ 97 (560)
T PF06160_consen 57 QTEEKFEEWRQKWDEIV-TKQLPEIEEQLFEAEEYADKYRFK 97 (560)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhcccHH
Confidence 33445555555555442 233455555555555555555444
No 40
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=38.05 E-value=3.7e+02 Score=25.80 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHh
Q 021839 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTD 62 (307)
Q Consensus 27 le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~ 62 (307)
++..+++++++...++.+.|-+|.+.-..++.+..-
T Consensus 186 le~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~ 221 (330)
T KOG2991|consen 186 LEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRT 221 (330)
T ss_pred HHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHH
Confidence 466778899999999999999998766666544433
No 41
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=37.83 E-value=51 Score=28.91 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=28.5
Q ss_pred eeeCCCCCccccccCceEEEEecCCeeEEEecCcc
Q 021839 175 SRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEER 209 (307)
Q Consensus 175 ~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~R 209 (307)
.-..|.++..+-..+|.|||.|..||..+.++..+
T Consensus 124 ~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~ 158 (190)
T PF02815_consen 124 KSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVK 158 (190)
T ss_dssp EESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEE
T ss_pred cccCCccCCcEEecccEEEEEECCcCEEEecCCcc
Confidence 33457778888888999999999999988887654
No 42
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=36.54 E-value=3e+02 Score=24.30 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHh-------ccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Q 021839 7 LRKDVEAASDRVEEIRA-------SAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL-LTDFKTKMD 78 (307)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-------~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~-~~~l~~~~e 78 (307)
+...+-+...++..++. .=+.+.+.+.+..|...+.. .+++++.+..++...+..+.. ...|.....
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~-----~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~ 152 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQK-----NQDKVQALINELNDFKDKLQKDSRNLKTDVD 152 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444333 44556777777777665544 677888888888888775543 444666666
Q ss_pred HHHHHHh
Q 021839 79 DAVTIVK 85 (307)
Q Consensus 79 d~~~l~e 85 (307)
.+..++.
T Consensus 153 ~l~~~l~ 159 (184)
T PF05791_consen 153 ELQSILA 159 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=35.41 E-value=4.4e+02 Score=28.48 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=12.7
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021839 46 FWDNRAEAQETLQALTDVKDKINLLTDFKT 75 (307)
Q Consensus 46 fWdD~~ka~~l~kEls~L~~~v~~~~~l~~ 75 (307)
+|.-......+..++..+......+..++.
T Consensus 261 i~~l~~el~~l~~~l~~l~~~~~~~~~l~~ 290 (880)
T PRK03918 261 IRELEERIEELKKEIEELEEKVKELKELKE 290 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333334444444444444444444333
No 44
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.29 E-value=3.4e+02 Score=28.32 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhcCCccc---ccHHHHHHHHHHH
Q 021839 28 QQLEKELAELEMKAADSSFW---DNRAEAQETLQAL 60 (307)
Q Consensus 28 e~l~~r~~eLe~~l~dP~fW---dD~~ka~~l~kEl 60 (307)
+.+.+++..++...+.-.-| .|+.+|+.++..+
T Consensus 168 ~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l 203 (569)
T PRK04778 168 DELEKQLENLEEEFSQFVELTESGDYVEAREILDQL 203 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 55555555555555444333 3566666664433
No 45
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.19 E-value=2.2e+02 Score=27.63 Aligned_cols=113 Identities=15% Similarity=0.221 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhc----CCCCCCCCCceEEEeeCCCC
Q 021839 65 DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL----LSGPYDKEGAVISITAGAGG 140 (307)
Q Consensus 65 ~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~L----ls~p~D~~naileI~aGaGG 140 (307)
+....|+++++.++-++...+..+++ ..-+..++...++++.++.--.| |-.+-|.+++|+--..|..=
T Consensus 29 dly~r~k~le~~le~l~vqe~yik~e-------~~~lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny 101 (408)
T KOG0727|consen 29 DLYVRYKKLERELELLEVQEDYIKDE-------QRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNY 101 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCce
Confidence 34455666666665444444433321 22234444445555555442222 24677888888766555332
Q ss_pred ccc------------------c-ccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccc
Q 021839 141 TDA------------------Q-TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNK 187 (307)
Q Consensus 141 ~ea------------------h-Ts~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk 187 (307)
.-. | -|-|-|+|+|.-.|.++..-=+.+.-.+.+.- -||--|.|
T Consensus 102 ~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~d---iggld~qk 164 (408)
T KOG0727|consen 102 YVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYAD---IGGLDVQK 164 (408)
T ss_pred EEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccc---cccchhhH
Confidence 111 3 36688999987555444333333333444443 34444444
No 46
>PRK10869 recombination and repair protein; Provisional
Probab=33.70 E-value=5.7e+02 Score=26.65 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHH
Q 021839 49 NRAEAQETLQALTDVKDKINLLT 71 (307)
Q Consensus 49 D~~ka~~l~kEls~L~~~v~~~~ 71 (307)
||.+...+...+..+...-.+|.
T Consensus 294 dp~~l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 294 DPNRLAELEQRLSKQISLARKHH 316 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhC
Confidence 78777777666666665555554
No 47
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.45 E-value=5.1e+02 Score=26.03 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=8.3
Q ss_pred CcchhhHHHHHHHHHHHH
Q 021839 1 MQDFYNLRKDVEAASDRV 18 (307)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (307)
|+++.-++...+...+.+
T Consensus 1 MlD~k~ir~n~~~v~~~l 18 (425)
T PRK05431 1 MLDIKLIRENPEAVKEAL 18 (425)
T ss_pred CCCHHHHHhCHHHHHHHH
Confidence 555555554444444333
No 48
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=32.46 E-value=1.3e+02 Score=29.27 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=21.4
Q ss_pred HHhcCCCCCCCCCceEEEeeCCCCccc
Q 021839 117 LTQLLSGPYDKEGAVISITAGAGGTDA 143 (307)
Q Consensus 117 l~~Lls~p~D~~naileI~aGaGG~ea 143 (307)
...+|..=.|..+++.-.-|||||-+|
T Consensus 273 qt~~Ld~i~~l~gvl~~lipgaGggda 299 (337)
T COG3890 273 QTAALDSIFDLLGVLCDLIPGAGGGDA 299 (337)
T ss_pred hhhhhhhHHhccCceEeecccCCCCce
Confidence 445566667788888899999999877
No 49
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=32.41 E-value=3.6e+02 Score=23.90 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=14.9
Q ss_pred cCHHHHHHHHHHHHHHhc
Q 021839 25 AGLQQLEKELAELEMKAA 42 (307)
Q Consensus 25 l~le~l~~r~~eLe~~l~ 42 (307)
..++.+++|+.+||..+-
T Consensus 5 ~~l~~Le~Ri~~LE~~v~ 22 (174)
T PF07426_consen 5 SALDILEKRIEELERRVY 22 (174)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 457888999999999994
No 50
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.23 E-value=4e+02 Score=27.31 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHH--HHhcCC-CCCCCCCceEEEeeCCCC
Q 021839 101 AASIIKELNKALDQFE--LTQLLS-GPYDKEGAVISITAGAGG 140 (307)
Q Consensus 101 a~~el~~l~~~l~~lE--l~~Lls-~p~D~~naileI~aGaGG 140 (307)
+...+.++++++..++ +..+.+ +..+...+.+.|.+..+|
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~v~v~l~~~~~g 192 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLTGKSQRSHTVLVRLEAPEDA 192 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEeccCCc
Confidence 4455566666666554 444443 333344456677654444
No 51
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=31.82 E-value=2.3e+02 Score=23.99 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=49.0
Q ss_pred ccCHHHHHHHHHHHHHHh-cCCcccccH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHH
Q 021839 24 SAGLQQLEKELAELEMKA-ADSSFWDNR-----AEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGL 97 (307)
Q Consensus 24 ~l~le~l~~r~~eLe~~l-~dP~fWdD~-----~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el 97 (307)
.-++..++.++.+++... .|..|.+.- ..+|.+. ...++..-.|-..+..-... + ..-++.
T Consensus 40 ~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~gQ~~l------~~LLd~C~~li~dl~~~~~~-----~-~~~~~~- 106 (134)
T PF10303_consen 40 SSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPGGQAVL------NGLLDDCFDLIEDLLERKGE-----E-IEVDPS- 106 (134)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcchHHHH------HHHHHHHHHHHHHHHHhccc-----c-ccccHH-
Confidence 356789999999999999 999998654 3334432 22233333332222211110 0 012455
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 021839 98 LEEAASIIKELNKALDQFELT 118 (307)
Q Consensus 98 ~~ea~~el~~l~~~l~~lEl~ 118 (307)
+..+++.+.+++..++++.+.
T Consensus 107 l~~iY~~L~~ik~~LE~L~lT 127 (134)
T PF10303_consen 107 LQPIYDQLIDIKNTLENLLLT 127 (134)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 446888888999888887654
No 52
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.52 E-value=1.3e+02 Score=27.89 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=17.8
Q ss_pred cCCcccccHHHHHHHHHHHHhH
Q 021839 42 ADSSFWDNRAEAQETLQALTDV 63 (307)
Q Consensus 42 ~dP~fWdD~~ka~~l~kEls~L 63 (307)
-||-+|-||..+..+.+..++.
T Consensus 93 ~dPH~Wldp~n~~~~a~~I~~~ 114 (264)
T cd01020 93 DNPHLWYDPETMSKVANALADA 114 (264)
T ss_pred CCCceecCHhHHHHHHHHHHHH
Confidence 4999999999998887665544
No 53
>PRK10869 recombination and repair protein; Provisional
Probab=31.21 E-value=5e+02 Score=27.06 Aligned_cols=28 Identities=0% Similarity=-0.139 Sum_probs=14.0
Q ss_pred HHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Q 021839 54 QETLQALT-DVKDKINLLTDFKTKMDDAV 81 (307)
Q Consensus 54 ~~l~kEls-~L~~~v~~~~~l~~~~ed~~ 81 (307)
+++.++|+ .+.+++....++++.++.+.
T Consensus 309 ~~L~rKyg~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 309 ISLARKHHVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 44455555 45555555555555544433
No 54
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=31.10 E-value=2.1e+02 Score=27.32 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.9
Q ss_pred CCcccccHHHHHHHHHHHH
Q 021839 43 DSSFWDNRAEAQETLQALT 61 (307)
Q Consensus 43 dP~fWdD~~ka~~l~kEls 61 (307)
||-+|=||..+..+.+..+
T Consensus 144 dPHiWldp~~~~~~a~~I~ 162 (311)
T PRK09545 144 NMHIWLSPEIARATAVAIH 162 (311)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999999999988766544
No 55
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.18 E-value=5e+02 Score=27.08 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhcCCccc---ccHHHHHHHHHHH
Q 021839 27 LQQLEKELAELEMKAADSSFW---DNRAEAQETLQAL 60 (307)
Q Consensus 27 le~l~~r~~eLe~~l~dP~fW---dD~~ka~~l~kEl 60 (307)
++.+++++..++...+.-.-| .|+.+|++++.++
T Consensus 163 ~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l 199 (560)
T PF06160_consen 163 IEELEKQLENIEEEFSEFEELTENGDYLEAREILEKL 199 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 356666666666555433322 4677777775443
No 56
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=30.15 E-value=5.4e+02 Score=28.67 Aligned_cols=78 Identities=8% Similarity=0.208 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 021839 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEM-KAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVK 85 (307)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~-~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~e 85 (307)
+..+++....++..+.+...++.+--.-+..++ ...|++||.-.++.+.... .+.-+..|...+.|.+-+.+...+.+
T Consensus 682 lq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~-~ae~e~~vk~k~~l~rm~~d~~~f~e 760 (988)
T KOG2072|consen 682 LQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAA-IAERESAVKDKKRLSRMYDDRDKFKE 760 (988)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444445445555444444443344443 3489999987766654432 22225555555555555555444444
No 57
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.80 E-value=2.4e+02 Score=26.08 Aligned_cols=61 Identities=10% Similarity=0.216 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHH
Q 021839 48 DNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFE 116 (307)
Q Consensus 48 dD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lE 116 (307)
+....++.+..++.+++..++..+..+..+. .+++-+ .+.+-.-.++.++..++.+|+.++
T Consensus 122 ~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~---~ll~ka-----~~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 122 SRNISSEDVTEQYVDLEARLKNLEAEEERLL---ELLEKA-----KTVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred eeeccccchHHHHHHHHHHHHHHHHHHHHHH---HHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777766655544444333332 333211 122223346666777777777666
No 58
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.24 E-value=5.4e+02 Score=24.96 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=41.4
Q ss_pred hccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021839 23 ASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVT 82 (307)
Q Consensus 23 ~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~ 82 (307)
.-.++..+...+..|+.......+ .|..-.++.++.++|...+..+......-..+..
T Consensus 105 ~~~~~~~ler~i~~Le~~~~T~~L--~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~e 162 (294)
T COG1340 105 GGRSIKSLEREIERLEKKQQTSVL--TPEEERELVQKIKELRKELEDAKKALEENEKLKE 162 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999988866555 6777788888888888777766654444443333
No 59
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.12 E-value=1.8e+02 Score=25.80 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=16.7
Q ss_pred cCCcccccHHHHHHHHHHHHh
Q 021839 42 ADSSFWDNRAEAQETLQALTD 62 (307)
Q Consensus 42 ~dP~fWdD~~ka~~l~kEls~ 62 (307)
.||-+|-||..+..+.+..++
T Consensus 106 ~dPH~Wldp~~~~~~a~~I~~ 126 (203)
T cd01145 106 GNPHVWLDPNNAPALAKALAD 126 (203)
T ss_pred CCcCeecCHHHHHHHHHHHHH
Confidence 499999999998887665544
No 60
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.06 E-value=5.1e+02 Score=24.31 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHH-----HhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHH
Q 021839 7 LRKDVEAASDRVEEI-----RASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLL 70 (307)
Q Consensus 7 ~~~~~~~~~~~~~~~-----~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~ 70 (307)
++..+.++...++.+ .-..++..+.+|++..+..++. -.|...+..+..|...+++.....
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~---v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA---VKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333 3345688899999999999933 457777888877777666555543
No 61
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.85 E-value=6.5e+02 Score=26.63 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 021839 29 QLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (307)
Q Consensus 29 ~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~ 72 (307)
.+.+-..+|...+.+-+| ||....++..++..|.....+|..
T Consensus 277 ~l~ea~~el~~~~~~le~--Dp~~L~~ve~Rl~~L~~l~RKY~~ 318 (557)
T COG0497 277 ELEEASEELRAYLDELEF--DPNRLEEVEERLFALKSLARKYGV 318 (557)
T ss_pred HHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445566666666666 888888887777777777666654
No 62
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.20 E-value=2.3e+02 Score=26.71 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.0
Q ss_pred cCCcccccHHHHHHHHHHHHh
Q 021839 42 ADSSFWDNRAEAQETLQALTD 62 (307)
Q Consensus 42 ~dP~fWdD~~ka~~l~kEls~ 62 (307)
.||-+|-||..+..+.+..++
T Consensus 115 ~dPH~Wldp~~~~~~a~~Ia~ 135 (287)
T cd01137 115 PDPHAWMSPKNAIIYVKNIAK 135 (287)
T ss_pred CCCCcCcCHHHHHHHHHHHHH
Confidence 399999999999888766553
No 63
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.09 E-value=4.3e+02 Score=24.87 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHH----HHHHHHHHHH
Q 021839 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKIN----LLTDFKTKMD 78 (307)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~----~~~~l~~~~e 78 (307)
...++++..+++..+++.+-. .-+.+.+++.+++.+... =+++...+-.|.+.|....+ .|.+|+..++
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~--EkeeL~~eleele~e~ee-----~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQK--EKEELLKELEELEAEYEE-----VQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q ss_pred HHHHHHhhhhh
Q 021839 79 DAVTIVKLTEE 89 (307)
Q Consensus 79 d~~~l~eL~~e 89 (307)
++..=+++..+
T Consensus 202 ELe~~~El~e~ 212 (290)
T COG4026 202 ELEPGVELPEE 212 (290)
T ss_pred HhcccccchHH
No 64
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.24 E-value=3.5e+02 Score=23.38 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=32.8
Q ss_pred hccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHH
Q 021839 23 ASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL 69 (307)
Q Consensus 23 ~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~ 69 (307)
..-+..+++.++.++-+++..=+-=|+-.+..++-|+++.+.+.++.
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~ 84 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEK 84 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888877667777777777777666544443
No 65
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=25.84 E-value=3e+02 Score=30.87 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021839 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAV 81 (307)
Q Consensus 27 le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~ 81 (307)
+++++++++.++.++++|+|-.... ...+.+|...+.+.......+++.+..+.
T Consensus 938 l~kl~~ei~~~~~kL~N~~F~~kAp-~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 938 LAKLQKSLESYLKKISIPNYEDKVP-EDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHhCCchhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999986521 23345666666555555555444444443
No 66
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=25.60 E-value=1.5e+02 Score=30.41 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=21.6
Q ss_pred HHHhcCCCCCCCCCceEEEeeCCCCccc
Q 021839 116 ELTQLLSGPYDKEGAVISITAGAGGTDA 143 (307)
Q Consensus 116 El~~Lls~p~D~~naileI~aGaGG~ea 143 (307)
++..|+.--..-.+|+.-..|||||.++
T Consensus 383 ~~t~Lld~~~~~~Gvl~a~vpGAGGgDa 410 (454)
T TIGR01219 383 SQTQLLDSTMSLEGVLLAGVPGAGGFDA 410 (454)
T ss_pred HHHHHHHHHhhcCCeeEeecCCCCccce
Confidence 3666665556667888889999999887
No 67
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=24.87 E-value=3.2e+02 Score=20.93 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHH
Q 021839 28 QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKI 67 (307)
Q Consensus 28 e~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v 67 (307)
..+.....++...+..|.+ |+.+...+.++...+...+
T Consensus 66 ~~~~~~r~~l~~ll~~~~~--D~~~i~a~~~~~~~~~~~l 103 (125)
T PF13801_consen 66 QELRAARQELRALLAAPPP--DEAAIEALLEEIREAQAEL 103 (125)
T ss_dssp HHHHHHHHHHHHHHCCSSS---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 5667778899999999987 8888888888888876444
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.90 E-value=6.7e+02 Score=29.74 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCccc
Q 021839 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFW 47 (307)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fW 47 (307)
+..+.++....++..+...+ ..+..++..|+.+...-.-|
T Consensus 297 eA~kkLe~tE~nL~rI~diL--~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 297 TSRRQLAAEQYRLVEMAREL--AELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555655555544 66666777777666554443
No 69
>PLN02943 aminoacyl-tRNA ligase
Probab=23.32 E-value=2.8e+02 Score=31.01 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021839 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAV 81 (307)
Q Consensus 27 le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~ 81 (307)
+++++++++.++.+|++|+|-.... ...+.++...++.....+..+++.+..+.
T Consensus 898 l~klekei~~~~~kLsN~~F~~KAP-~evv~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 898 LSKMQTEYDALAARLSSPKFVEKAP-EDVVRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHhCCchhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999999976521 23345666666555555555444444433
No 70
>PLN02320 seryl-tRNA synthetase
Probab=23.11 E-value=8.1e+02 Score=25.50 Aligned_cols=45 Identities=7% Similarity=0.120 Sum_probs=20.7
Q ss_pred HhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHH
Q 021839 22 RASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66 (307)
Q Consensus 22 ~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~ 66 (307)
+..+|+..+.+..+.+.+.+..-.+-.+-++...+-.++..+...
T Consensus 64 ~~mlD~k~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~ 108 (502)
T PLN02320 64 KAAIDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKE 108 (502)
T ss_pred ccccCHHHHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544311233333333443333333
No 71
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=23.11 E-value=39 Score=27.21 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=17.2
Q ss_pred eEEEecCcccHHHHHHHHHHHHHHH
Q 021839 201 VTVRCTEERSQLANKIKALSRLKAK 225 (307)
Q Consensus 201 i~v~~~~~Rsq~~Nr~~a~~~L~~~ 225 (307)
++|+..+-|.|..--..|.+||..-
T Consensus 71 ~~VT~eDIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 71 FVVTEEDIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888889888888888888754
No 72
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.92 E-value=2.4e+02 Score=26.04 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.1
Q ss_pred cCCcccccHHHHHHHHHHHHh
Q 021839 42 ADSSFWDNRAEAQETLQALTD 62 (307)
Q Consensus 42 ~dP~fWdD~~ka~~l~kEls~ 62 (307)
-||-+|-||..+..+.+..++
T Consensus 110 ~dPH~Wldp~~~~~~a~~I~~ 130 (266)
T cd01018 110 YDPHIWLSPANAKIMAENIYE 130 (266)
T ss_pred CCCccCcCHHHHHHHHHHHHH
Confidence 499999999999888766553
No 73
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=22.90 E-value=3.2e+02 Score=21.22 Aligned_cols=44 Identities=5% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHH
Q 021839 69 LLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFEL 117 (307)
Q Consensus 69 ~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl 117 (307)
...+|+.+++|+..+++.++ =+-....+..++..++.+|..++.
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a~-----R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQAK-----RKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----TCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999988764 345788889999999999988764
No 74
>cd00552 RaiA RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).
Probab=22.50 E-value=3.4e+02 Score=20.42 Aligned_cols=37 Identities=30% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEE-ecCCeeEEEecCcccHHHHHHHHHHHHHHHHH
Q 021839 191 AVRIT-HIPTGVTVRCTEERSQLANKIKALSRLKAKLL 227 (307)
Q Consensus 191 ~vrl~-h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~ 227 (307)
.|+++ |+|.+.++.....-+-+.--..|+.+|...|.
T Consensus 51 ~v~i~v~~~g~~~~a~~~~~d~~~Aid~a~~kl~rqL~ 88 (93)
T cd00552 51 KVEITIHLPGGVLRAEASAEDLYAAIDLAVDKLERQLR 88 (93)
T ss_pred EEEEEEEeCCCEEEEEEccCCHHHHHHHHHHHHHHHHH
Confidence 55554 77844444444445656666666666665553
No 75
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=22.43 E-value=3.2e+02 Score=27.32 Aligned_cols=26 Identities=46% Similarity=0.658 Sum_probs=20.5
Q ss_pred HhcCCCCCCCCCceEEEeeCCCCccc
Q 021839 118 TQLLSGPYDKEGAVISITAGAGGTDA 143 (307)
Q Consensus 118 ~~Lls~p~D~~naileI~aGaGG~ea 143 (307)
..||.+-..-.++++---|||||.+|
T Consensus 386 T~lLD~~~sl~GVl~~gvPGAGGfDA 411 (459)
T KOG4519|consen 386 TQLLDSTMSLEGVLLAGVPGAGGFDA 411 (459)
T ss_pred hhHhhhhhcccceEEecccCCCCcce
Confidence 35666666677888888999999777
No 76
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.25 E-value=4.9e+02 Score=22.15 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=26.2
Q ss_pred ccccHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021839 46 FWDNRAEAQETLQALTD---VKDKINLLTDFKTKMDDAVTIVKLTEE 89 (307)
Q Consensus 46 fWdD~~ka~~l~kEls~---L~~~v~~~~~l~~~~ed~~~l~eL~~e 89 (307)
.|-|+.+..+-++-+++ ++..|..-+.....++|+..=++|+.|
T Consensus 15 t~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~De 61 (131)
T KOG1760|consen 15 TFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDE 61 (131)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCc
Confidence 47777766666555554 444455555555556666666777654
No 77
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=22.04 E-value=87 Score=21.60 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.3
Q ss_pred CceEEEEecCCeeEEEecCcc
Q 021839 189 ETAVRITHIPTGVTVRCTEER 209 (307)
Q Consensus 189 ~s~vrl~h~ptgi~v~~~~~R 209 (307)
.+.|||+|..||--..+...+
T Consensus 7 g~~vrL~H~~tg~yL~s~~~~ 27 (57)
T smart00472 7 GDVVRLRHVTTGRYLHSHENK 27 (57)
T ss_pred CCEEEEEEhhhCcEeecCCCC
Confidence 579999999999777777655
No 78
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.62 E-value=6.6e+02 Score=26.18 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhcCC
Q 021839 28 QQLEKELAELEMKAADS 44 (307)
Q Consensus 28 e~l~~r~~eLe~~l~dP 44 (307)
+++..++..|-..+.+|
T Consensus 414 E~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 414 EELRAKLDTLLAQLNAP 430 (508)
T ss_pred HHHHHHHHHHHHHhcCh
Confidence 55566666666666666
No 79
>PRK12798 chemotaxis protein; Reviewed
Probab=21.54 E-value=1.1e+02 Score=31.10 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh--cCCcccccHHHHHHH
Q 021839 4 FYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKA--ADSSFWDNRAEAQET 56 (307)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l--~dP~fWdD~~ka~~l 56 (307)
=|++-+.++-++.++- .+..--.+....=+.++.+.+ .+|++|+||......
T Consensus 34 PyelvRSLQ~lQD~Va-~Gd~~A~~~Qr~LL~~i~~~l~aa~~~vw~dprNv~Aa 87 (421)
T PRK12798 34 PYKLVRSLQLLQDSVA-AGDHSAHEMQRFLLGTIDERLRAADPEVWDDPRNVDAA 87 (421)
T ss_pred cHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHhCCHHHhCCccchhHH
Confidence 3678888888888884 566666777777788888887 899999999877654
No 80
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=21.02 E-value=6.5e+02 Score=23.05 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEE
Q 021839 96 GLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVIS 133 (307)
Q Consensus 96 el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naile 133 (307)
++...+...-.++.+.++.|.|.-|+.|.+|-.-.|-+
T Consensus 138 e~M~rL~aD~~~l~aeV~~f~ITdl~ddDfdv~tlf~~ 175 (228)
T PF06721_consen 138 ERMCRLKADKNKLGAEVDDFAITDLMDDDFDVWTLFEK 175 (228)
T ss_pred chHHHHHccHHHHHhHHHhhcchhhhcCchhHHHHHHH
Confidence 44556777888999999999999999999886544433
No 81
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=20.88 E-value=1.6e+02 Score=21.10 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=11.6
Q ss_pred ceEEEEecCCeeEEEecC
Q 021839 190 TAVRITHIPTGVTVRCTE 207 (307)
Q Consensus 190 s~vrl~h~ptgi~v~~~~ 207 (307)
++|.+...|.|+.|.-+.
T Consensus 16 ~CVEva~~~~~v~vRDSk 33 (56)
T PF04149_consen 16 NCVEVARLPGGVAVRDSK 33 (56)
T ss_pred CcEEEEeecceEEEecCC
Confidence 467777777776665544
No 82
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.85 E-value=3.8e+02 Score=28.27 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhcCCcc-ccc-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021839 27 LQQLEKELAELEMKAADSSF-WDN-RAEAQETLQALTDVKDKINLLTDFKTKMDDAV 81 (307)
Q Consensus 27 le~l~~r~~eLe~~l~dP~f-WdD-~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~ 81 (307)
++.++.|+..|.....+-.. .+| +....++..|++.|...-.....|++....+.
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~ 355 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLK 355 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 56777777777766655444 233 66666777778877777777777777666554
No 83
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.80 E-value=1.3e+03 Score=26.40 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhc---------CCCCCCCCCceEEEeeCCCCc
Q 021839 95 AGLLEEAASIIKELNKALDQFELTQL---------LSGPYDKEGAVISITAGAGGT 141 (307)
Q Consensus 95 ~el~~ea~~el~~l~~~l~~lEl~~L---------ls~p~D~~naileI~aGaGG~ 141 (307)
....+...+.+..+.+.+..+ +..| |.+|.|.-++-++|++--+|.
T Consensus 1005 ~~~~~~f~~~f~~In~~F~~i-f~~L~~GG~a~L~l~~~dd~l~~Giei~a~ppgK 1059 (1163)
T COG1196 1005 KEKRERFKETFDKINENFSEI-FKELFGGGTAELELTEPDDPLTAGIEISARPPGK 1059 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCCCCeeEEEeCCCCchhhcCcEEEEECCCC
Confidence 334444444455555544443 2233 356777655666666554443
No 84
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.78 E-value=2.6e+02 Score=26.21 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=5.0
Q ss_pred EEEeeCCCC
Q 021839 132 ISITAGAGG 140 (307)
Q Consensus 132 leI~aGaGG 140 (307)
++|.||-|-
T Consensus 160 leie~~hge 168 (246)
T KOG4657|consen 160 LEIEAGHGE 168 (246)
T ss_pred ceeeeccCc
Confidence 566665553
No 85
>PF08829 AlphaC_N: Alpha C protein N terminal; InterPro: IPR014933 The alpha C protein (ACP) is found in Streptococcus and acts as an invasin which plays a role in the internalisation and translocation of the organism across human epithelial surfaces. Group B Streptococcus is the leading cause of diseases including bacterial pneumonia, sepsis and meningitis. The N-terminal of ACP is associated with virulence and forms a beta sandwich and a three helix bundle [, , ]. ; PDB: 1YWM_A 2O0I_1.
Probab=20.37 E-value=6.4e+02 Score=22.72 Aligned_cols=41 Identities=27% Similarity=0.558 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKIN 68 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~ 68 (307)
|...++.++.++++...||. |++-.+ -+++..+..++..++
T Consensus 121 dst~lrdkIdeV~~ka~Dpk-ws~gsr-deVl~gLe~IK~Did 161 (194)
T PF08829_consen 121 DSTPLRDKIDEVKKKANDPK-WSEGSR-DEVLEGLEKIKNDID 161 (194)
T ss_dssp --HHHHHHHHHHHHHHTSTT-B-HHHH-HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcccCCC-cCcccH-HHHHHHHHHHHHHhh
Confidence 45788999999999999998 888632 234455554444443
No 86
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=20.24 E-value=3.2e+02 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=16.6
Q ss_pred hcCCcccccHHHHHHHHHHHH
Q 021839 41 AADSSFWDNRAEAQETLQALT 61 (307)
Q Consensus 41 l~dP~fWdD~~ka~~l~kEls 61 (307)
--||.+|-||..+....+..+
T Consensus 130 ~~dpH~Wldp~na~~~v~~I~ 150 (303)
T COG0803 130 VNDPHVWLDPKNAKIYAENIA 150 (303)
T ss_pred CCCCCeecCHHHHHHHHHHHH
Confidence 569999999998887755443
Done!