Query 021839
Match_columns 307
No_of_seqs 198 out of 1681
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 100.0 4.1E-86 1.4E-90 635.0 27.3 292 1-296 1-364 (365)
2 2ihr_1 Peptide chain release f 100.0 2.7E-82 9.4E-87 608.0 12.2 281 10-299 2-355 (365)
3 1zbt_A RF-1, peptide chain rel 100.0 1.2E-80 4.3E-85 597.0 19.6 277 24-304 16-369 (371)
4 3d5a_X RF1, peptide chain rele 100.0 7.9E-80 2.7E-84 588.9 25.0 272 26-305 4-352 (354)
5 2b3t_B RF-1, peptide chain rel 100.0 6.6E-80 2.3E-84 590.6 9.7 272 25-304 7-356 (360)
6 1rq0_A RF-1, peptide chain rel 100.0 5.1E-74 1.8E-78 546.2 14.7 256 31-304 2-332 (342)
7 2rsm_A Probable peptide chain 100.0 2.1E-34 7.2E-39 234.3 10.2 87 145-232 24-110 (115)
8 1j26_A Immature colon carcinom 99.9 1.4E-26 4.8E-31 189.2 10.3 70 160-229 12-106 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 1.8E-26 6.1E-31 187.5 8.6 68 162-229 7-98 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 4.3E-25 1.5E-29 186.9 7.3 70 161-230 6-99 (140)
11 2lw1_A ABC transporter ATP-bin 96.4 0.014 4.9E-07 44.9 8.3 43 27-69 31-74 (89)
12 4fla_A Regulation of nuclear P 79.0 18 0.00061 30.3 10.3 103 13-115 26-133 (152)
13 3lay_A Zinc resistance-associa 76.0 14 0.00048 31.6 9.0 61 6-69 71-131 (175)
14 2ctk_A Vigilin; K homology typ 60.8 14 0.00048 28.6 5.3 49 179-231 33-87 (104)
15 3err_A Fusion protein of micro 60.7 44 0.0015 33.3 10.1 70 33-115 136-206 (536)
16 1xaw_A Occludin; coiled-coil, 56.3 34 0.0012 28.3 7.1 56 26-84 67-132 (140)
17 3na7_A HP0958; flagellar bioge 49.8 1.4E+02 0.0046 26.4 10.8 44 26-72 68-111 (256)
18 1naf_A ADP-ribosylation factor 48.5 1.2E+02 0.0041 25.4 9.6 22 94-115 89-110 (158)
19 3oja_B Anopheles plasmodium-re 40.9 2.6E+02 0.0088 27.0 12.5 15 100-114 562-576 (597)
20 3viq_B Mating-type switching p 39.6 86 0.0029 23.7 6.4 34 3-45 2-35 (85)
21 3r6n_A Desmoplakin; spectrin r 38.6 1.1E+02 0.0036 29.8 8.6 16 6-21 169-184 (450)
22 1oxz_A ADP-ribosylation factor 34.9 1.9E+02 0.0066 24.7 8.8 22 94-115 105-126 (186)
23 1xaw_A Occludin; coiled-coil, 34.6 1.2E+02 0.0041 25.0 7.1 44 29-72 94-137 (140)
24 2ctl_A Vigilin; K homology typ 34.5 25 0.00086 26.7 2.8 47 179-228 33-87 (97)
25 1vig_A Vigilin; RNA-binding pr 34.3 30 0.001 24.5 3.1 42 179-224 21-68 (71)
26 3hh8_A Metal ABC transporter s 33.8 1.6E+02 0.0055 26.5 8.6 20 42-61 121-140 (294)
27 1u5p_A Spectrin alpha chain, b 33.5 2E+02 0.0068 23.6 9.5 45 28-72 13-57 (216)
28 2dq0_A Seryl-tRNA synthetase; 31.7 2.2E+02 0.0077 27.4 9.8 18 1-18 1-18 (455)
29 2axy_A Poly(RC)-binding protei 30.4 20 0.00067 25.7 1.5 46 179-227 21-71 (73)
30 1lq7_A Alpha3W; three helix bu 29.7 1E+02 0.0034 21.5 4.9 38 6-43 6-43 (67)
31 4abx_A DNA repair protein RECN 29.2 2.4E+02 0.0082 23.2 8.8 24 48-71 119-142 (175)
32 3ujp_A Mn transporter subunit; 28.3 1.5E+02 0.0053 26.9 7.6 21 42-62 128-148 (307)
33 2dq3_A Seryl-tRNA synthetase; 28.1 3.9E+02 0.013 25.3 10.9 47 26-72 3-51 (425)
34 3okq_A BUD site selection prot 27.4 2.6E+02 0.0089 23.0 10.8 48 27-74 30-77 (141)
35 2a26_A Calcyclin-binding prote 27.4 1.5E+02 0.005 20.1 7.0 43 70-117 6-48 (50)
36 2pih_A Protein YMCA; regulate 27.2 2.5E+02 0.0086 22.8 9.8 17 53-69 42-58 (151)
37 1ywm_A C protein alpha-antigen 27.1 2.1E+02 0.0073 24.5 7.4 41 26-68 122-162 (200)
38 2ctf_A Vigilin; K homology typ 26.8 61 0.0021 24.8 3.8 46 179-228 43-92 (102)
39 2a3d_A Protein (de novo three- 25.6 1.2E+02 0.004 21.5 4.7 66 4-70 4-70 (73)
40 3fb2_A Spectrin alpha chain, b 24.8 3E+02 0.01 22.8 9.6 45 28-72 23-67 (218)
41 1mqv_A Cytochrome C'; four-hel 23.2 76 0.0026 24.9 3.9 22 42-63 67-88 (125)
42 2ctm_A Vigilin; K homology typ 22.9 50 0.0017 24.9 2.6 59 162-227 20-84 (95)
43 3vrc_A Cytochrome C'; C-type c 21.3 86 0.003 25.1 3.9 21 43-63 74-94 (131)
44 3gi1_A LBP, laminin-binding pr 20.4 1.6E+02 0.0055 26.3 5.9 21 42-62 119-139 (286)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=4.1e-86 Score=634.98 Aligned_cols=292 Identities=33% Similarity=0.585 Sum_probs=279.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 021839 1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDA 80 (307)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~ 80 (307)
||+.++++..++++..++..++.+|+++.+.+|+++|+.+|++|+||+||++|+++++|++.|+++|+.|..|++..+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~ 80 (365)
T 1gqe_A 1 MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV 80 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEEEeeCCCCccc-----------------
Q 021839 81 VTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA----------------- 143 (307)
Q Consensus 81 ~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naileI~aGaGG~ea----------------- 143 (307)
..+.+|+++ +.|++|+++|.+++..+++.++.+|+..||+||+|.+||||||+||+||+||
T Consensus 81 ~~~~el~~~--e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~ 158 (365)
T 1gqe_A 81 SGLLELAVE--ADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAES 158 (365)
T ss_dssp HHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999876 3599999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------cccccccccccCCCCCCCCCCCCCC
Q 021839 144 -------------------------------------------------------QTSFSGAEVMPLLPEESMDVQIPEE 168 (307)
Q Consensus 144 -------------------------------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~ 168 (307)
|||||+|+|+|++++ ++++.|+++
T Consensus 159 ~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~-~v~i~i~~~ 237 (365)
T 1gqe_A 159 RGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPA 237 (365)
T ss_dssp TTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGG
T ss_pred CCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCc-ccccccCHH
Confidence 999999999999853 578999999
Q ss_pred CceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 021839 169 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA 248 (307)
Q Consensus 169 dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~ 248 (307)
||+|+|+|||||||||||||+|+|||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++.++.|+.+..+
T Consensus 238 dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i 317 (365)
T 1gqe_A 238 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDI 317 (365)
T ss_dssp GEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCC
T ss_pred HceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred ccCCccceeecCCCCccccccccccccCcccccCCCcHHHHHHHHHHH
Q 021839 249 EWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 296 (307)
Q Consensus 249 ~~g~~iRtY~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~ 296 (307)
+||+|||||||+||+ |||||||++++|+++||+||||+||++++.|.
T Consensus 318 ~~G~~IRtY~f~~~r-VkDhRt~~~~~~l~~vldGdld~~I~a~l~~~ 364 (365)
T 1gqe_A 318 GWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKAG 364 (365)
T ss_dssp CSCSEEEEEEGGGTE-EEETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred CccCCeEeEECCCCe-eeccccCceECCHHHHhCCCHHHHHHHHHHhc
Confidence 999999999998877 99999999999999999999999999999763
No 2
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=2.7e-82 Score=607.96 Aligned_cols=281 Identities=36% Similarity=0.601 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-hhh
Q 021839 10 DVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVK-LTE 88 (307)
Q Consensus 10 ~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~e-L~~ 88 (307)
.++++..++..++.+|+++.+..|+++|+.+|++|+||+||++|+++++|++.|+++|+.|.+|++..+|+..+.+ |++
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~ 81 (365)
T 2ihr_1 2 DLERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPA 81 (365)
T ss_dssp ----CTTTHHHHTTSSSHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567778889999999999999999999999999999999999999999999999999999999999999999999 875
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCCceEEEeeCCCCccc-------------------------
Q 021839 89 EMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA------------------------- 143 (307)
Q Consensus 89 e~~~~D~el~~ea~~el~~l~~~l~~lEl~~Lls~p~D~~naileI~aGaGG~ea------------------------- 143 (307)
+ +| +++.+++..+++.++.+|+.+||+||+|.+||||||+||+||+||
T Consensus 82 e---ed----~~a~~e~~~l~~~~~~le~~~ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl 154 (365)
T 2ihr_1 82 E---ER----EALKPELEEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVV 154 (365)
T ss_dssp T---TG----GGTGGGTHHHHHHHHHHHHHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred c---cH----HHHHHHHHHHHHHHHHHHHHHhcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4 13 678899999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------cccccccccccCCCCCCCCCCCCCCCceeeEee
Q 021839 144 -----------------------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSR 176 (307)
Q Consensus 144 -----------------------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~R 176 (307)
|||||+|+|+|+++ +++++.|+++||+|+|+|
T Consensus 155 ~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~-~~~~i~i~~~dl~i~~~R 233 (365)
T 2ihr_1 155 DLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVD-EEVEVVLKPEELRIDVMR 233 (365)
T ss_dssp EEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECC-SSSSCCCCGGGEEEEEEC
T ss_pred ecCCCCCCCeEEEEEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCC-cccccccCccceEEEEee
Confidence 99999999999985 357889999999999999
Q ss_pred eCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCccce
Q 021839 177 AGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRN 256 (307)
Q Consensus 177 ssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~~g~~iRt 256 (307)
||||||||||||+|+|||+|+||||+|+||++|||++||+.|+++|+++|++++.+++.++.+..|+.+..++||++|||
T Consensus 234 ssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~IRt 313 (365)
T 2ihr_1 234 ASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIEWGSQIRS 313 (365)
T ss_dssp CCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCSCCSCCCSCSEE
T ss_pred cCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred eecCCCCccccccccccccCcccccCCCcHHHHHHHHHHHhhc
Q 021839 257 YVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSM 299 (307)
Q Consensus 257 Y~~~~~~~v~Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~~~~ 299 (307)
|||+| +||||||||++++|+++||+||||+||++++.+....
T Consensus 314 Ynf~~-~rVtDhRtg~~~~~l~~VldGdld~~I~a~l~~~~~~ 355 (365)
T 2ihr_1 314 YVLDK-NYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAGR 355 (365)
T ss_dssp EEGGG-TEEEETTTCCEESCHHHHTTTCCHHHHHHHHHHHHTT
T ss_pred EECCC-ccchhcccCceeCChHHHhCCcHHHHHHHHHHHHhcc
Confidence 99976 9999999999999999999999999999999887543
No 3
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-80 Score=596.99 Aligned_cols=277 Identities=29% Similarity=0.427 Sum_probs=222.9
Q ss_pred ccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHH
Q 021839 24 SAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAAS 103 (307)
Q Consensus 24 ~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~ 103 (307)
+++++.+.+|+++|+.+|++|+||+||++++++++|++.|+++|+.|..|++..+++.++.+|+++. ++|++|+++|.+
T Consensus 16 ~~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~-e~D~e~~~~a~~ 94 (371)
T 1zbt_A 16 YDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDA-SGDPELEEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999998641 248999999999
Q ss_pred HHHHHHHHHhHHH--HHhcC--CCCCCCCCceEEEeeCCCCccc------------------------------------
Q 021839 104 IIKELNKALDQFE--LTQLL--SGPYDKEGAVISITAGAGGTDA------------------------------------ 143 (307)
Q Consensus 104 el~~l~~~l~~lE--l~~Ll--s~p~D~~naileI~aGaGG~ea------------------------------------ 143 (307)
++..+++.++.+| +..|| +||+|.+||||||+||+||+||
T Consensus 95 e~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~k 174 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLK 174 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCce
Confidence 9999999999998 45565 9999999999999999999999
Q ss_pred ------------------------------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccc
Q 021839 144 ------------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNK 187 (307)
Q Consensus 144 ------------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk 187 (307)
|||||+|+|+|++++ +++.|+++||+|+|+||||||||||||
T Consensus 175 sv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~e--v~i~I~~~dl~i~~~RssGpGGQ~VNk 252 (371)
T 1zbt_A 175 EVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEE--VEYEIDPKDLRVDIYHASGAGGQNVNK 252 (371)
T ss_dssp EEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCG--GGSCCCGGGEEEEEECC---------C
T ss_pred EEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccc--cccccCcCcEEEEEecCCCCCCCcccc
Confidence 999999999999853 788999999999999999999999999
Q ss_pred cCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCccc
Q 021839 188 VETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVK 266 (307)
Q Consensus 188 ~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~ 266 (307)
|+|+|||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++....|+.+++ ++||++||||||+| +|||
T Consensus 253 t~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~ig~g~Rse~IRtYnf~q-~rVt 331 (371)
T 1zbt_A 253 VATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQ-NRVT 331 (371)
T ss_dssp CCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCSCSCTTSEEEEEETTT-TEEE
T ss_pred cceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCeeeEECCC-CEee
Confidence 999999999999999999999999999999999999999999999988888888877665 57778999999955 8999
Q ss_pred cccccccccCcccccCCCcHHHHHHHHHHHhhcccccc
Q 021839 267 DVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSAS 304 (307)
Q Consensus 267 Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~~~~~~~~~ 304 (307)
|||||++++|+++||+|+||+||++++.+..++.|.++
T Consensus 332 DhRtg~~~~~l~~VldGdLd~~I~a~l~~~~~~~l~~~ 369 (371)
T 1zbt_A 332 DHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEEL 369 (371)
T ss_dssp ETTTTEEESCHHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ecccCCeECChHHHhCCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999888887665
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=7.9e-80 Score=588.93 Aligned_cols=272 Identities=31% Similarity=0.502 Sum_probs=255.1
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el 105 (307)
+++.+..|+++|+.+|++|+||+||++++++++|++.|+++|+.|..|++..+++.++.+|++ |++|+++|.+++
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~-----D~e~~~~a~~e~ 78 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD-----DPELKEMAKAER 78 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999862 899999999999
Q ss_pred HHHHHHHhHHH--HH--hcCCCCCCCCCceEEEeeCCCCccc--------------------------------------
Q 021839 106 KELNKALDQFE--LT--QLLSGPYDKEGAVISITAGAGGTDA-------------------------------------- 143 (307)
Q Consensus 106 ~~l~~~l~~lE--l~--~Lls~p~D~~naileI~aGaGG~ea-------------------------------------- 143 (307)
..+++.++.+| +. +||+||+|.+||||||+||+||+||
T Consensus 79 ~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v 158 (354)
T 3d5a_X 79 EALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKV 158 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEE
Confidence 99999999988 44 4459999999999999999999999
Q ss_pred ----------------------------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccC
Q 021839 144 ----------------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 189 (307)
Q Consensus 144 ----------------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~ 189 (307)
|||||+|+|+|++++ +++.|+++||+|+|+|||||||||||||+
T Consensus 159 ~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~--~~i~i~~~dl~i~~~RssG~GGQ~VNkt~ 236 (354)
T 3d5a_X 159 VFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEE--EDFALNMDEIRIDVMRASGPGGQGVNTTD 236 (354)
T ss_dssp EEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCC--CCCCCCGGGEEEEEECCCSCCHHHHHHCC
T ss_pred EEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcc--cccccCccceEEEeecCCCCCCccccccc
Confidence 999999999999854 68899999999999999999999999999
Q ss_pred ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCccccc
Q 021839 190 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDV 268 (307)
Q Consensus 190 s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~Dh 268 (307)
|+|||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++....|+.+++ ++||++||||||+| +|||||
T Consensus 237 SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~q-~rVtDh 315 (354)
T 3d5a_X 237 SAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQ-SRVTDH 315 (354)
T ss_dssp CEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTT-TEEEET
T ss_pred ceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCC-Ceeeec
Confidence 9999999999999999999999999999999999999999999988888888877665 57888999999955 899999
Q ss_pred cccccccCcccccCCCcHHHHHHHHHHHhhccccccc
Q 021839 269 RTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASD 305 (307)
Q Consensus 269 r~~~~~~~~~~vl~G~l~~~i~~~~~~~~~~~~~~~~ 305 (307)
|||++++|+++||+||||+||++++.+...+.|.++.
T Consensus 316 R~~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~~~~ 352 (354)
T 3d5a_X 316 RIGFTTHDLEGVLSGHLTPILEALKRADQERQLAALA 352 (354)
T ss_dssp TTTEEECCHHHHTTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCceeCChHHhhCCchHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999998888877653
No 5
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=6.6e-80 Score=590.56 Aligned_cols=272 Identities=29% Similarity=0.432 Sum_probs=213.3
Q ss_pred cCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHH
Q 021839 25 AGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASI 104 (307)
Q Consensus 25 l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~e 104 (307)
-+++.+..|+++|+.+|++|+||+||++|+++++|++.|+++|+.|..|.+..+++.++.+|+ + |++|.++|.++
T Consensus 7 ~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e----D~e~~~~a~~e 81 (360)
T 2b3t_B 7 AKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D----DPEMREMAQDE 81 (360)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999997 3 88999999999
Q ss_pred HHHHHHHHhHHHHH----hcCCCCCCCCCceEEEeeCCCCccc-------------------------------------
Q 021839 105 IKELNKALDQFELT----QLLSGPYDKEGAVISITAGAGGTDA------------------------------------- 143 (307)
Q Consensus 105 l~~l~~~l~~lEl~----~Lls~p~D~~naileI~aGaGG~ea------------------------------------- 143 (307)
+..+++.++.++.. +||+||+|.+||||||+||+||+||
T Consensus 82 ~~~l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~ 161 (360)
T 2b3t_B 82 LREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKE 161 (360)
T ss_dssp -------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceE
Confidence 99999999999975 7889999999999999999999999
Q ss_pred -----------------------------------cccccccccccCCCCCCCC-CCCCCCCceeeEeeeCCCCCccccc
Q 021839 144 -----------------------------------QTSFSGAEVMPLLPEESMD-VQIPEEDLEISFSRAGGKGGQNVNK 187 (307)
Q Consensus 144 -----------------------------------hTs~~~v~v~P~~~~~~~~-~~i~~~dl~i~~~RssG~GGQ~vNk 187 (307)
|||||+|+|+|++++ ++ +.|+++||+|+|+||||||||||||
T Consensus 162 ~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~--~e~i~i~~~dl~i~~~RssG~GGQ~VNk 239 (360)
T 2b3t_B 162 IIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPD--AELPDVNPADLRIDTFRSSGAGGQHVNT 239 (360)
T ss_dssp EEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCT--TTCCCCCSSSEEEEECCSSCCCTTTCCC
T ss_pred EEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCccc--ccccccChhheEEeeecCCCCCCCcccc
Confidence 999999999999854 56 8899999999999999999999999
Q ss_pred cCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCccc
Q 021839 188 VETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVK 266 (307)
Q Consensus 188 ~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~ 266 (307)
|+|+|||+|+||||+|+||++|||++||+.|+++|+++|++...+++.++....|+.+++ ++||++||||||+| +|||
T Consensus 240 t~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~~-~rVt 318 (360)
T 2b3t_B 240 TDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQ-GRVT 318 (360)
T ss_dssp SSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTT-TEEE
T ss_pred ccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCeeeEECCC-Ceee
Confidence 999999999999999999999999999999999999999999888887888888877665 57788999999955 8999
Q ss_pred cccccccccCcccccCCCcHHHHHHHHHHHhhcccccc
Q 021839 267 DVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSAS 304 (307)
Q Consensus 267 Dhr~~~~~~~~~~vl~G~l~~~i~~~~~~~~~~~~~~~ 304 (307)
|||||++++|+++||+|+||+||++++.+...+.|.++
T Consensus 319 DhRt~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~~~ 356 (360)
T 2b3t_B 319 DHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAAL 356 (360)
T ss_dssp EGGGTEEESCHHHHHHTCTHHHHHHHHHHHHHHHCC--
T ss_pred ecccCcEECCHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998888765
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=5.1e-74 Score=546.19 Aligned_cols=256 Identities=33% Similarity=0.507 Sum_probs=220.8
Q ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHH
Q 021839 31 EKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNK 110 (307)
Q Consensus 31 ~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~ 110 (307)
.+|+++|+.+|++|+| ||++|+++++|++.|+++|+.|..|+ .++ ++.+|+++ ++|+ .+++..+++
T Consensus 2 ~~r~~el~~~~~~p~~--d~~~~~~~~ke~~~l~~~v~~~~~~~-~~~---~~~~l~~e--~~D~------~~e~~~l~~ 67 (342)
T 1rq0_A 2 KEKKKEIEKLLARPDL--TPEQMKNYGMEYAKIEEIENITNRIK-ETQ---EFIELLRE--EGEN------ELEIEKYEK 67 (342)
T ss_dssp TTTTTHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHTTTTT--TTTC------CSCHHHHHH
T ss_pred hHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-hHH---HHHHHHHh--cCCH------HHHHHHHHH
Confidence 4578999999999999 99999999999999999999999999 444 55555543 2355 577888888
Q ss_pred HHhHHH--HHhcCCCCCCCCCceEEEeeCCCCccc---------------------------------------------
Q 021839 111 ALDQFE--LTQLLSGPYDKEGAVISITAGAGGTDA--------------------------------------------- 143 (307)
Q Consensus 111 ~l~~lE--l~~Lls~p~D~~naileI~aGaGG~ea--------------------------------------------- 143 (307)
.++.++ ++.||. |+|.+||||||+||+||+||
T Consensus 68 ~l~~le~~l~~lL~-p~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~ 146 (342)
T 1rq0_A 68 ELDQLYQELLFLLS-PEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGK 146 (342)
T ss_dssp HHHHHHHHHHHHHS-CSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEEST
T ss_pred HHHHHHHHHHHhcC-ccccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECc
Confidence 888888 778887 99999999999999999999
Q ss_pred ---------------------------cccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEe
Q 021839 144 ---------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH 196 (307)
Q Consensus 144 ---------------------------hTs~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h 196 (307)
|||||+|+|+|++++ +++.|+++||+|+|+|||||||||||||+|+|||+|
T Consensus 147 ~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~--~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~h 224 (342)
T 1rq0_A 147 NAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEE--KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITH 224 (342)
T ss_dssp THHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCG--GGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEE
T ss_pred CHHHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccc--cccccChhHeEEEeecCCCCCCcccccccceEEEEE
Confidence 999999999999853 788999999999999999999999999999999999
Q ss_pred cCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccCCccceeecCCCCcccccccccccc
Q 021839 197 IPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDVRTGHETS 275 (307)
Q Consensus 197 ~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~~~~~~~~~~~r~~~~~-~~~g~~iRtY~~~~~~~v~Dhr~~~~~~ 275 (307)
+||||+|+||++|||++||+.|+++|+++|++...+++.++....|+.+++ ++||++||||||+| +||||||||++++
T Consensus 225 lPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~Rse~IRtYnf~~-~rVtDhRt~~~~~ 303 (342)
T 1rq0_A 225 LPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQ-NRVTDHRINYTSY 303 (342)
T ss_dssp TTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTT-TEEEETTTTEEES
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeEEEECCC-CeeeecccCceeC
Confidence 999999999999999999999999999999999999888887777776665 57888999999955 8999999999999
Q ss_pred CcccccCCCcHHHHHHHHHHHhhcccccc
Q 021839 276 DIVSVMDGELEPFIKSYLKYKYSMSLSAS 304 (307)
Q Consensus 276 ~~~~vl~G~l~~~i~~~~~~~~~~~~~~~ 304 (307)
|+++||+||||+||++++.+...+.|.++
T Consensus 304 ~l~~vldGdLd~~I~a~l~~~~~~~l~~~ 332 (342)
T 1rq0_A 304 RLQEILDGDLDEIISKLIEHDIENNLEEV 332 (342)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHTTTHHHH
T ss_pred CHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888777554
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-34 Score=234.35 Aligned_cols=87 Identities=29% Similarity=0.406 Sum_probs=82.2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeeEeeeCCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHH
Q 021839 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKA 224 (307)
Q Consensus 145 Ts~~~v~v~P~~~~~~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h~ptgi~v~~~~~Rsq~~Nr~~a~~~L~~ 224 (307)
|||++|+|+|+.+ +...+.|+++||+|+|+|||||||||||||+|||||+|+||||+|.||++|||++||+.||++|++
T Consensus 24 ts~~~v~v~p~~d-~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~L~~ 102 (115)
T 2rsm_A 24 MAASTVQVAGRKD-YPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQE 102 (115)
T ss_dssp CCCCCCCCCSCCC-CCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cceEEEEeccccC-CCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 9999999999985 456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 021839 225 KLLVIAEE 232 (307)
Q Consensus 225 ~l~~~~~~ 232 (307)
||+++...
T Consensus 103 kL~e~~~~ 110 (115)
T 2rsm_A 103 KVDVFYNS 110 (115)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcc
Confidence 99987543
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.94 E-value=1.4e-26 Score=189.21 Aligned_cols=70 Identities=29% Similarity=0.521 Sum_probs=66.6
Q ss_pred CCCCCCCCCCceeeEeeeCCCCCccccccCceEEEE-ecCCe------------------------eEEEecCcccHHHH
Q 021839 160 SMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRIT-HIPTG------------------------VTVRCTEERSQLAN 214 (307)
Q Consensus 160 ~~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~-h~ptg------------------------i~v~~~~~Rsq~~N 214 (307)
.+++.||++||+++|+|||||||||||||+|+|+|+ |+|+| |+|+||++|||++|
T Consensus 12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 91 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN 91 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHH
Confidence 467889999999999999999999999999999997 99998 99999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 021839 215 KIKALSRLKAKLLVI 229 (307)
Q Consensus 215 r~~a~~~L~~~l~~~ 229 (307)
|+.|+++|+++|++.
T Consensus 92 r~~Al~rL~~~l~~a 106 (112)
T 1j26_A 92 LAECLQKIRDMIAEA 106 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999864
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.93 E-value=1.8e-26 Score=187.48 Aligned_cols=68 Identities=35% Similarity=0.650 Sum_probs=65.1
Q ss_pred CCCCCCCCceeeEeeeCCCCCccccccCceEEEEe------cC-----------------Ce-eEEEecCcccHHHHHHH
Q 021839 162 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH------IP-----------------TG-VTVRCTEERSQLANKIK 217 (307)
Q Consensus 162 ~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~h------~p-----------------tg-i~v~~~~~Rsq~~Nr~~ 217 (307)
.+.||++||+++|+|||||||||||||+|+|+|+| +| +| |+|+||++|||++||+.
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 57899999999999999999999999999999999 99 88 99999999999999999
Q ss_pred HHHHHHHHHHHH
Q 021839 218 ALSRLKAKLLVI 229 (307)
Q Consensus 218 a~~~L~~~l~~~ 229 (307)
|+++|+++|++.
T Consensus 87 Al~rL~~~l~~a 98 (108)
T 2jva_A 87 ALLRLSELIVNA 98 (108)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.91 E-value=4.3e-25 Score=186.94 Aligned_cols=70 Identities=40% Similarity=0.582 Sum_probs=65.6
Q ss_pred CCCCCCCCCceeeEeeeCCCCCccccccCceEEEE------ecCC------------------eeEEEecCcccHHHHHH
Q 021839 161 MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRIT------HIPT------------------GVTVRCTEERSQLANKI 216 (307)
Q Consensus 161 ~~~~i~~~dl~i~~~RssG~GGQ~vNk~~s~vrl~------h~pt------------------gi~v~~~~~Rsq~~Nr~ 216 (307)
.++.||++||+++|+|||||||||||||+|+|+|+ |+|+ ||+|.||++|||++||+
T Consensus 6 ~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~ 85 (140)
T 4dh9_Y 6 RHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNRE 85 (140)
T ss_dssp SSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHH
T ss_pred CCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHH
Confidence 36789999999999999999999999999999999 7997 59999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 021839 217 KALSRLKAKLLVIA 230 (307)
Q Consensus 217 ~a~~~L~~~l~~~~ 230 (307)
.|+++|.++|++..
T Consensus 86 ~A~~rL~~~l~~a~ 99 (140)
T 4dh9_Y 86 AALARLVAMIKELT 99 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998743
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=96.42 E-value=0.014 Score=44.89 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhcCCccc-ccHHHHHHHHHHHHhHHHHHHH
Q 021839 27 LQQLEKELAELEMKAADSSFW-DNRAEAQETLQALTDVKDKINL 69 (307)
Q Consensus 27 le~l~~r~~eLe~~l~dP~fW-dD~~ka~~l~kEls~L~~~v~~ 69 (307)
|+.++.+++.|+..|+||+|+ +|+.+.+.++.++..+...+..
T Consensus 31 Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 31 LEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998 5899999999999998876654
No 12
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=79.01 E-value=18 Score=30.26 Aligned_cols=103 Identities=12% Similarity=0.243 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhccCHH-HHHHHHHHHHHHhcCCccc---ccHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 021839 13 AASDRVEEIRASAGLQ-QLEKELAELEMKAADSSFW---DNRAEAQETLQALTDVKDKINLLTD-FKTKMDDAVTIVKLT 87 (307)
Q Consensus 13 ~~~~~~~~~~~~l~le-~l~~r~~eLe~~l~dP~fW---dD~~ka~~l~kEls~L~~~v~~~~~-l~~~~ed~~~l~eL~ 87 (307)
++...+..|..+..-+ ..+++++.|=..++||++. .|...+.+++++..+-...+..|.. |....++=..+.+++
T Consensus 26 elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L 105 (152)
T 4fla_A 26 ELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARML 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333 4578899999999999987 4688889999999998888888877 566777777777766
Q ss_pred hhcccCCHHHHHHHHHHHHHHHHHHhHH
Q 021839 88 EEMDSTDAGLLEEAASIIKELNKALDQF 115 (307)
Q Consensus 88 ~e~~~~D~el~~ea~~el~~l~~~l~~l 115 (307)
.+-...-.+.+.++...+.+.+..+.++
T Consensus 106 ~~~~~~~~~~l~e~e~~leeyK~Kl~rv 133 (152)
T 4fla_A 106 VEYTQNQKDVLSEKEKKLEEYKQKLARV 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321111233444555555555554443
No 13
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.03 E-value=14 Score=31.63 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHH
Q 021839 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL 69 (307)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~ 69 (307)
|-+++++++.+.+..=...+ -+++.....+|..++..|+| |+.++.++.+|.++|...+..
T Consensus 71 EQq~ql~~I~~e~r~~~~~L-r~ql~akr~EL~aL~~a~~~--DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSAL-RQQLISKRYEYNALLTASSP--DTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555543211111 25677788999999999997 999999999999999865543
No 14
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=60.81 E-value=14 Score=28.60 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCCCcccccc--CceEEEEecCCe----eEEEecCcccHHHHHHHHHHHHHHHHHHHHH
Q 021839 179 GKGGQNVNKV--ETAVRITHIPTG----VTVRCTEERSQLANKIKALSRLKAKLLVIAE 231 (307)
Q Consensus 179 G~GGQ~vNk~--~s~vrl~h~ptg----i~v~~~~~Rsq~~Nr~~a~~~L~~~l~~~~~ 231 (307)
|+||-++++- .|.|+|.-.+.| .+.-+ .. . .+-+.|..++...+.+.+.
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~-G~--~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAIT-GL--A-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEE-EC--H-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEE-cC--H-HHHHHHHHHHHHHHhhHHH
Confidence 9999999954 578887765555 33222 22 2 5677888888877655443
No 15
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=60.68 E-value=44 Score=33.34 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=52.6
Q ss_pred HHHHHH-HHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHH
Q 021839 33 ELAELE-MKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKA 111 (307)
Q Consensus 33 r~~eLe-~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~ 111 (307)
.+..|+ .-+.+|+| +|+.+.+.++-.+.|-.||.+..++.....+...+.+- +..+++++.++++.
T Consensus 136 ~~~~l~~~y~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~e-----------Lk~lE~eL~e~e~e 202 (536)
T 3err_A 136 IREKMKKNYMSNPSY--NYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNE-----------LQKLEDDAKDNQQK 202 (536)
T ss_dssp HHHHHHHHTTTSTTC--SHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHH-----------HHHHHHHHHHHHHH
Confidence 456676 57899998 89999999999999999999988877766665555432 34456677777777
Q ss_pred HhHH
Q 021839 112 LDQF 115 (307)
Q Consensus 112 l~~l 115 (307)
+..+
T Consensus 203 L~~l 206 (536)
T 3err_A 203 LEAL 206 (536)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 16
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=56.31 E-value=34 Score=28.33 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHHHH
Q 021839 26 GLQQLEKELAELEMKAAD-SSFWDNRAEAQETLQALTDVKDK---------INLLTDFKTKMDDAVTIV 84 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~d-P~fWdD~~ka~~l~kEls~L~~~---------v~~~~~l~~~~ed~~~l~ 84 (307)
.++.+..+|.+|+.+|.. | ..+...+.+..|+..++++ =..+.-|..++..++.++
T Consensus 67 ev~~v~~~F~~Ld~~L~~l~---~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI 132 (140)
T 1xaw_A 67 VLDEINKELSRLDKELDDYR---EESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMV 132 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHSC---TTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777755 3 3556667777777776542 113444555555555544
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.83 E-value=1.4e+02 Score=26.38 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~ 72 (307)
+++....++...+.++..- .+++.+..+.+|+..++..+....+
T Consensus 68 ~i~~~~~ri~~~~~~l~~v---~~~kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 68 TLQDTNAKIASIQKKMSEI---KSERELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788888888653 3788888888888888777665544
No 18
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=48.53 E-value=1.2e+02 Score=25.37 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhHH
Q 021839 94 DAGLLEEAASIIKELNKALDQF 115 (307)
Q Consensus 94 D~el~~ea~~el~~l~~~l~~l 115 (307)
|.+++.++...+..++..|.++
T Consensus 89 d~Ell~eL~~~Ck~~qp~i~~L 110 (158)
T 1naf_A 89 SEDLMKELYQRCERMRPTLFRL 110 (158)
T ss_dssp CTTHHHHHHHHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777776666665543
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.88 E-value=2.6e+02 Score=27.03 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHhH
Q 021839 100 EAASIIKELNKALDQ 114 (307)
Q Consensus 100 ea~~el~~l~~~l~~ 114 (307)
++.++...+.+++.+
T Consensus 562 ~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 562 ELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 20
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.64 E-value=86 Score=23.73 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCc
Q 021839 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSS 45 (307)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~dP~ 45 (307)
+...+...++.+.... ..+.+.+.++..++.+|+
T Consensus 2 ~~~~L~~~i~~L~~q~---------~~L~~ei~~~~a~L~~~~ 35 (85)
T 3viq_B 2 EKSQLESRVHLLEQQK---------EQLESSLQDALAKLKNRD 35 (85)
T ss_dssp CHHHHHHHHHHHHHHH---------HHHHHHHHHHHHTCSSSC
T ss_pred cHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhccCC
Confidence 3344555555555543 356677888888887763
No 21
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=38.61 E-value=1.1e+02 Score=29.82 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 021839 6 NLRKDVEAASDRVEEI 21 (307)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (307)
++..+++.+...|..|
T Consensus 169 ~I~~r~~~L~~~W~~L 184 (450)
T 3r6n_A 169 KIEAYMDTLQTQWSWI 184 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455554444433
No 22
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=34.94 E-value=1.9e+02 Score=24.70 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhHH
Q 021839 94 DAGLLEEAASIIKELNKALDQF 115 (307)
Q Consensus 94 D~el~~ea~~el~~l~~~l~~l 115 (307)
|.+++.++...+..++..+.++
T Consensus 105 d~Ell~eL~~~Ck~~qp~i~~L 126 (186)
T 1oxz_A 105 SEDLMKELYQRCERMRPTLFRL 126 (186)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888777776554
No 23
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=34.56 E-value=1.2e+02 Score=24.97 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 021839 29 QLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (307)
Q Consensus 29 ~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~ 72 (307)
.+..++..+...-.+|+|-....+..-|-.+|+.++..|..|.+
T Consensus 94 ~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~YD~ 137 (140)
T 1xaw_A 94 AAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDR 137 (140)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44556666665566777666666666666666666666666654
No 24
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=34.52 E-value=25 Score=26.70 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=30.2
Q ss_pred CCCCcccccc--CceEEEEecCCe------eEEEecCcccHHHHHHHHHHHHHHHHHH
Q 021839 179 GKGGQNVNKV--ETAVRITHIPTG------VTVRCTEERSQLANKIKALSRLKAKLLV 228 (307)
Q Consensus 179 G~GGQ~vNk~--~s~vrl~h~ptg------i~v~~~~~Rsq~~Nr~~a~~~L~~~l~~ 228 (307)
|+||.++|+- .|.|+|.-.+.| -.|..... ..+-..|..++...+.+
T Consensus 33 GkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 33 GRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGE 87 (97)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHH
Confidence 9999999955 578887765555 13333332 24666777777766543
No 25
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=34.31 E-value=30 Score=24.52 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=26.9
Q ss_pred CCCCcccccc--CceEEEEecCCe----eEEEecCcccHHHHHHHHHHHHHH
Q 021839 179 GKGGQNVNKV--ETAVRITHIPTG----VTVRCTEERSQLANKIKALSRLKA 224 (307)
Q Consensus 179 G~GGQ~vNk~--~s~vrl~h~ptg----i~v~~~~~Rsq~~Nr~~a~~~L~~ 224 (307)
||||.++|+- .+.|+|.-.+.| .+.-+ ... .+-+.|..++..
T Consensus 21 G~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~-G~~---~~v~~A~~~I~~ 68 (71)
T 1vig_A 21 GKSGANINRIKDQYKVSVRIPPDSEKSNLIRIE-GDP---QGVQQAKRELLE 68 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEE-ESS---HHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHCCEEEECCCCCcccEEEEE-cCH---HHHHHHHHHHHH
Confidence 9999999954 578888777777 33323 222 345666665543
No 26
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=33.77 E-value=1.6e+02 Score=26.48 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=16.1
Q ss_pred cCCcccccHHHHHHHHHHHH
Q 021839 42 ADSSFWDNRAEAQETLQALT 61 (307)
Q Consensus 42 ~dP~fWdD~~ka~~l~kEls 61 (307)
.||-+|-||..+..+.+..+
T Consensus 121 ~dPHvWldp~~~~~~a~~I~ 140 (294)
T 3hh8_A 121 EDPHAWLNLENGIIYSKNIA 140 (294)
T ss_dssp BCCCGGGSHHHHHHHHHHHH
T ss_pred CCCceeCCHHHHHHHHHHHH
Confidence 49999999999888765544
No 27
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=33.47 E-value=2e+02 Score=23.61 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 021839 28 QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (307)
Q Consensus 28 e~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~ 72 (307)
..+..-+.+.+..++.+++=.|......+++++..++..|..+..
T Consensus 13 ~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~ 57 (216)
T 1u5p_A 13 KDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHED 57 (216)
T ss_dssp HHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566888899999988888999999999999999999887765
No 28
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.74 E-value=2.2e+02 Score=27.44 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=9.6
Q ss_pred CcchhhHHHHHHHHHHHH
Q 021839 1 MQDFYNLRKDVEAASDRV 18 (307)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (307)
|+++.-++...+...+.+
T Consensus 1 mld~~~~r~n~~~~~~~~ 18 (455)
T 2dq0_A 1 MLDIKLIRENPELVKNDL 18 (455)
T ss_dssp CCCHHHHHHCHHHHHHHH
T ss_pred CCCHHHHHhCHHHHHHHH
Confidence 555555555555554444
No 29
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=30.35 E-value=20 Score=25.66 Aligned_cols=46 Identities=26% Similarity=0.331 Sum_probs=30.4
Q ss_pred CCCCcccccc--CceEEEEecCCee---EEEecCcccHHHHHHHHHHHHHHHHH
Q 021839 179 GKGGQNVNKV--ETAVRITHIPTGV---TVRCTEERSQLANKIKALSRLKAKLL 227 (307)
Q Consensus 179 G~GGQ~vNk~--~s~vrl~h~ptgi---~v~~~~~Rsq~~Nr~~a~~~L~~~l~ 227 (307)
|+||.+++.- .|.++|.-.+.|. +|..... ..+-..|..++..+|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 9999999954 5778887666652 3443332 3455678877777764
No 30
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.68 E-value=1e+02 Score=21.48 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Q 021839 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAAD 43 (307)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~le~l~~r~~eLe~~l~d 43 (307)
.+.+.+..+.+++..|++--.++.+++++++|-..+..
T Consensus 6 aleekvkaleekvkalggggrieelkkkweelkkkiee 43 (67)
T 1lq7_A 6 ALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEE 43 (67)
T ss_dssp HHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888899999999888776654
No 31
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=29.17 E-value=2.4e+02 Score=23.20 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHH
Q 021839 48 DNRAEAQETLQALTDVKDKINLLT 71 (307)
Q Consensus 48 dD~~ka~~l~kEls~L~~~v~~~~ 71 (307)
-||.+...+...++.+...-.+|.
T Consensus 119 ~DP~rL~~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 119 ADPEALDRVEARLSALSKLKNKYG 142 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC
Confidence 388777777666666655555553
No 32
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=28.35 E-value=1.5e+02 Score=26.91 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=16.4
Q ss_pred cCCcccccHHHHHHHHHHHHh
Q 021839 42 ADSSFWDNRAEAQETLQALTD 62 (307)
Q Consensus 42 ~dP~fWdD~~ka~~l~kEls~ 62 (307)
.||-+|-||..+..+.+..++
T Consensus 128 ~DPHvWldp~n~~~~a~~I~~ 148 (307)
T 3ujp_A 128 PNPHAWMSPRNALVYVENIRQ 148 (307)
T ss_dssp BCCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHH
Confidence 499999999998887655443
No 33
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.10 E-value=3.9e+02 Score=25.34 Aligned_cols=47 Identities=6% Similarity=0.040 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHhcCCccc--ccHHHHHHHHHHHHhHHHHHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFW--DNRAEAQETLQALTDVKDKINLLTD 72 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fW--dD~~ka~~l~kEls~L~~~v~~~~~ 72 (307)
|+.-+.+-.+.+.+.+..-.+- +..++...+-.++..+...++.++.
T Consensus 3 d~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~ 51 (425)
T 2dq3_A 3 DINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRS 51 (425)
T ss_dssp CHHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555554431 1134444444444444444443333
No 34
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=27.42 E-value=2.6e+02 Score=23.01 Aligned_cols=48 Identities=10% Similarity=0.204 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 021839 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFK 74 (307)
Q Consensus 27 le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~l~ 74 (307)
++.++.-++.|-.-...-.+=+.|++...+.+++..+...+..+.++-
T Consensus 30 VDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i 77 (141)
T 3okq_A 30 VDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFI 77 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666688888888888888899999999999999998888777753
No 35
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=27.35 E-value=1.5e+02 Score=20.10 Aligned_cols=43 Identities=2% Similarity=0.130 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHHHHHHhHHHH
Q 021839 70 LTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFEL 117 (307)
Q Consensus 70 ~~~l~~~~ed~~~l~eL~~e~~~~D~el~~ea~~el~~l~~~l~~lEl 117 (307)
..+++.+++|+..+++.+ +=+-....+..++..++.++..++.
T Consensus 6 ~eeL~~DL~El~~Ll~~A-----kR~rVk~~L~~ei~~lE~ei~~~~~ 48 (50)
T 2a26_A 6 SEELQKDLEEVKVLLEKA-----TRKRVRDALTAEKSKIETEIKNKMQ 48 (50)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888888888875 3577888899999999988877654
No 36
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=27.21 E-value=2.5e+02 Score=22.78 Aligned_cols=17 Identities=0% Similarity=0.077 Sum_probs=8.0
Q ss_pred HHHHHHHHHhHHHHHHH
Q 021839 53 AQETLQALTDVKDKINL 69 (307)
Q Consensus 53 a~~l~kEls~L~~~v~~ 69 (307)
++++..++..++..+..
T Consensus 42 aq~li~eF~~~Q~~~~~ 58 (151)
T 2pih_A 42 VSTIVNQIKALQKQAVN 58 (151)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555444433
No 37
>1ywm_A C protein alpha-antigen; beta sandwich, fibronectin fold, antiparallel three-helix BU surface active protein; 1.86A {Streptococcus agalactiae} PDB: 2o0i_1
Probab=27.06 E-value=2.1e+02 Score=24.45 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHH
Q 021839 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKIN 68 (307)
Q Consensus 26 ~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~ 68 (307)
|--.++.++.++.+...||. |+|-.+ -+++..+..++..|+
T Consensus 122 DsT~lr~kIdeV~kka~Dpk-ws~~sr-deVl~~ld~Ik~DID 162 (200)
T 1ywm_A 122 DSTTLRDKIEEVRTNANDPK-WTEESR-TEVLTGLDTIKTDID 162 (200)
T ss_dssp CCHHHHHHHHHHHHHHTSTT-BCHHHH-HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcccCCC-CCcccH-HHHHHHHHHHhhhhc
Confidence 44678999999999999998 888643 456777777766666
No 38
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.76 E-value=61 Score=24.84 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=29.3
Q ss_pred CCCCccccccCc---eEEEEecCC-eeEEEecCcccHHHHHHHHHHHHHHHHHH
Q 021839 179 GKGGQNVNKVET---AVRITHIPT-GVTVRCTEERSQLANKIKALSRLKAKLLV 228 (307)
Q Consensus 179 G~GGQ~vNk~~s---~vrl~h~pt-gi~v~~~~~Rsq~~Nr~~a~~~L~~~l~~ 228 (307)
|+||+++++... .|+| ++|. .=.|+.... ...-+.|...|...+.+
T Consensus 43 G~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGP---TEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEEC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECC---HHHHHHHHHHHHHHHHH
Confidence 999999996654 5776 5662 224555544 34556677777666543
No 39
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=25.57 E-value=1.2e+02 Score=21.46 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHH
Q 021839 4 FYNLRKDVEAASDRVEEIRAS-AGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLL 70 (307)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-l~le~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~ 70 (307)
..++++++..+..|++.|+++ ..+...+++++-.|.++..-.=-.+|+ ...+-+|-+.+.+.+..|
T Consensus 4 waefkqrlaaiktrlqalggseaelaafekeiaafeselqaykgkgnpe-vealrkeaaairdelqay 70 (73)
T 2a3d_A 4 WAEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNPE-VEALRKEAAAIRDELQAY 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSST-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHh
Confidence 457899999999999999766 568888999999998886544334442 233456666666555555
No 40
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=24.76 E-value=3e+02 Score=22.79 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 021839 28 QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (307)
Q Consensus 28 e~l~~r~~eLe~~l~dP~fWdD~~ka~~l~kEls~L~~~v~~~~~ 72 (307)
..+..-+.+.+..++.+++-.|+..+..+++++..++..|+.+..
T Consensus 23 ~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~~ 67 (218)
T 3fb2_A 23 RDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAG 67 (218)
T ss_dssp HHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555778888888888889999999999999999999886554
No 41
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=23.23 E-value=76 Score=24.93 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=17.1
Q ss_pred cCCcccccHHHHHHHHHHHHhH
Q 021839 42 ADSSFWDNRAEAQETLQALTDV 63 (307)
Q Consensus 42 ~dP~fWdD~~ka~~l~kEls~L 63 (307)
..|.+|.|++.+......+..-
T Consensus 67 A~p~IW~~~~~F~~~~~~~~~a 88 (125)
T 1mqv_A 67 ALPKIFEDKAKFDDLFAKLAAA 88 (125)
T ss_dssp BCGGGGGSHHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHHH
Confidence 6689999999999886665533
No 42
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.90 E-value=50 Score=24.90 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=34.7
Q ss_pred CCCCCCCCceeeEeeeCCCCCcccccc--CceEEEEecCCee----EEEecCcccHHHHHHHHHHHHHHHHH
Q 021839 162 DVQIPEEDLEISFSRAGGKGGQNVNKV--ETAVRITHIPTGV----TVRCTEERSQLANKIKALSRLKAKLL 227 (307)
Q Consensus 162 ~~~i~~~dl~i~~~RssG~GGQ~vNk~--~s~vrl~h~ptgi----~v~~~~~Rsq~~Nr~~a~~~L~~~l~ 227 (307)
.+.||+.-+.. .. ||||.++++- .|.|+|.-.+.|- .|..... ..|-+.|..++...+.
T Consensus 20 ~i~Ip~~~ig~-II---G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~---~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 20 DVPLDHRVHAR-II---GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL---PENVEEAIDHILNLEE 84 (95)
T ss_dssp EEECCTTTHHH-HH---CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC---HHHHHHHHHHHHHHHH
T ss_pred EEEECHHHccc-cC---CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC---HHHHHHHHHHHHHHHH
Confidence 34555554431 12 9999999954 5678887666661 2333322 2566777777776543
No 43
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=21.31 E-value=86 Score=25.07 Aligned_cols=21 Identities=10% Similarity=0.223 Sum_probs=15.7
Q ss_pred CCcccccHHHHHHHHHHHHhH
Q 021839 43 DSSFWDNRAEAQETLQALTDV 63 (307)
Q Consensus 43 dP~fWdD~~ka~~l~kEls~L 63 (307)
.|.+|+|++.+.+....+..-
T Consensus 74 kp~IW~~~~~F~~~~~~~~~a 94 (131)
T 3vrc_A 74 KPELFQNLEDVGKLARDLGTA 94 (131)
T ss_dssp CGGGGGCHHHHHHHHHHHHHH
T ss_pred CHHHHhCHHHHHHHHHHHHHH
Confidence 388999999998876555443
No 44
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=20.45 E-value=1.6e+02 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.6
Q ss_pred cCCcccccHHHHHHHHHHHHh
Q 021839 42 ADSSFWDNRAEAQETLQALTD 62 (307)
Q Consensus 42 ~dP~fWdD~~ka~~l~kEls~ 62 (307)
.||-+|-||..+..+.+..++
T Consensus 119 ~dPHvWldp~~~~~~a~~I~~ 139 (286)
T 3gi1_A 119 YDPHTWTDPVLAGEEAVNIAK 139 (286)
T ss_dssp BCCCGGGSHHHHHHHHHHHHH
T ss_pred CCCceecCHHHHHHHHHHHHH
Confidence 499999999998887655443
Done!