RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021839
(307 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 160 bits (405), Expect = 4e-47
Identities = 84/358 (23%), Positives = 144/358 (40%), Gaps = 72/358 (20%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETL--------- 57
+ ++ ++R + +R ++ L E+ + W+ AQ
Sbjct: 4 VNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAV 63
Query: 58 --------QALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELN 109
Q L DV + L + + + +L + S +
Sbjct: 64 VDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSA 123
Query: 110 KALDQFE----------------------------LTQLLSGPYDKEGAVISITAGAGGT 141
+ T+++ + + S+T G
Sbjct: 124 DCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGD 183
Query: 142 DA-------------------------QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSR 176
A TSFS A V P + ++ +D++I DL I R
Sbjct: 184 YAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDD-IDIEINPADLRIDVYR 242
Query: 177 AGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRAS 236
A G GGQ+VN+ E+AVRITHIPTG+ +C +RSQ NK +A+ ++KAKL + +++ +
Sbjct: 243 ASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNA 302
Query: 237 EIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 294
E + + + WG QIR+YV + +KD+RTG ET + +V+DG L+ FI++ LK
Sbjct: 303 EKQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLK 359
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 132 bits (332), Expect = 9e-37
Identities = 82/308 (26%), Positives = 133/308 (43%), Gaps = 13/308 (4%)
Query: 1 MQDFYNLRKDVEAASDRVEEIR----ASAGLQQLEKELAELEMKAADSSFWDNRAEAQET 56
+++ N+ ++ + +E +R +++ EKEL +L + + EA +
Sbjct: 32 IEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQE----LLFLLSPEASDK 87
Query: 57 LQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFE 116
F + T + + A + E I+E+ +
Sbjct: 88 AIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKN 147
Query: 117 LTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSR 176
+L +GG + S A V L E D++I EDL+I R
Sbjct: 148 AYGILKYESGVHRVQRVPVTESGG---RIHTSTATVAVLPEIEEKDIEIRPEDLKIETFR 204
Query: 177 AGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRAS 236
A G GGQ VNK E+AVRITH+PTG+ V C ERSQ NK AL L+A+L + +EQ+
Sbjct: 205 ASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKER 264
Query: 237 EIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 295
EI Q R + E ++IR Y F P V D R + + + ++DG+L+ I +++
Sbjct: 265 EISQKRKSQIGTGERSEKIRTYNF-PQNRVTDHRINYTSYRLQEILDGDLDEIISKLIEH 323
Query: 296 KYSMSLSA 303
+L
Sbjct: 324 DIENNLEE 331
Score = 39.3 bits (91), Expect = 3e-04
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 30 LEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEE 89
++++ E+E A + + KI + + ++ + ++L E
Sbjct: 1 MKEKKKEIEKLLARPDLTPEQM------KNYGMEYAKIEEIENITNRIKETQEFIELLRE 54
Query: 90 MDSTDAGLLEEAASIIKELNKALDQFE-LTQLLSGPYDKEGAVISITAGAGGTDAQ 144
E I++ K LDQ L P + A++ I G GG +A
Sbjct: 55 EG--------ENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAA 102
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 129 bits (324), Expect = 1e-35
Identities = 59/301 (19%), Positives = 115/301 (38%), Gaps = 26/301 (8%)
Query: 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMD-DAVTIVK 85
QQ+++++ +M D + + + ++ ++ + D + ++
Sbjct: 45 WQQVQEDIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLE 104
Query: 86 LTEEMDSTDAGLLEEAASII----KELNKALDQF------------ELTQLLSGPY---- 125
+ +A L + E + + E+ +SG
Sbjct: 105 VRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGR 164
Query: 126 ---DKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGG 182
+ G + + + + ++ + DL I R+ G GG
Sbjct: 165 LKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGG 224
Query: 183 QNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIR 242
Q+VN ++A+RITH+PTG+ V C +ERSQ NK KALS L A++ +R R
Sbjct: 225 QHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTR 284
Query: 243 GDAVK-AEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSL 301
+ + + + R Y F P V D R + VM+G+L+ I+ ++ + L
Sbjct: 285 RNLLGSGDRSDRNRTYNF-PQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQL 343
Query: 302 S 302
+
Sbjct: 344 A 344
Score = 46.3 bits (109), Expect = 2e-06
Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 30 LEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEE 89
L + E++ D+ ++ + + + D TD++ +D T + ++
Sbjct: 2 LHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDD 61
Query: 90 MDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQT 145
+ +E ++ + Q ++ L P D+ A + + AG GG +A
Sbjct: 62 PE-MREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAAL 116
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 74.6 bits (183), Expect = 2e-17
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 25/102 (24%)
Query: 159 ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHI--------------------- 197
+ IP + L IS+ R+ G GGQNVNKV + +
Sbjct: 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKN 70
Query: 198 ----PTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 235
+ + R Q N + L +++ + +
Sbjct: 71 KINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASGPSSG 112
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 30.9 bits (69), Expect = 0.15
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 154 PLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV--------RC 205
P L + V I L + F+ G+G V + + +
Sbjct: 11 PELVQAVQHVVIGPSSLIVHFNEVIGRGHF--GCVYHGTLLDNDGKKIHCAVKSLNRITD 68
Query: 206 TEERSQLANKIKALSRLK 223
E SQ + +
Sbjct: 69 IGEVSQFLTEGIIMKDFS 86
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 27.4 bits (60), Expect = 1.5
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 24 SAGLQQLEKELAELEMKAADSSFWDN 49
S G ++++ ++ +L + +
Sbjct: 2 SPGKRRMDTDVVKLIESKHEVTILGG 27
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional
regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 89
Score = 25.2 bits (55), Expect = 4.0
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 93 TDAG--LLEEAASIIKELNKALDQFE 116
T L A+ ++ L + L+++
Sbjct: 63 TQRAEHLAAAVAAALRALGEGLEEWR 88
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 1
[TaxId: 11676]}
Length = 110
Score = 24.9 bits (54), Expect = 7.1
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 49 NRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKEL 108
+ E Q AL D ++N++TD + + + + D +++ L+ + II++L
Sbjct: 46 QKTELQAIYLALQDSGLEVNIVTDSQ------YALGIIQAQPDQSESELVNQ---IIEQL 96
Query: 109 NK 110
K
Sbjct: 97 IK 98
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 25.4 bits (55), Expect = 8.9
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 216 IKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETS 275
++ LS K ++ +IAE ++AS E ++ + + ++ +
Sbjct: 32 LEVLSG-KERVKIIAEFKKASPSAGDINADASLEDFIRMYDELADAISILTEKHYFKGDP 90
Query: 276 DIVSVMDG--ELEPFIKSYLKYKYSMSLSAS 304
V K + + L++S
Sbjct: 91 AFVRAARNLTCRPILAKDFYIDTVQVKLASS 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.341
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,043,488
Number of extensions: 47582
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 23
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.7 bits)