BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021840
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 265 bits (677), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 192/305 (62%), Gaps = 11/305 (3%)
Query: 3 DFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGPNS 62
D +G +D+VLGF +E Y++ PYFG ++GRVANRI G F ++G Y L +N PNS
Sbjct: 49 DRQGRASDVVLGFAELEGYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNS 107
Query: 63 LHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMRLD 122
LHGG +GFDKVLW +G + F S DGEEGYPG++ TY L + + ++
Sbjct: 108 LHGGVRGFDKVLWTPRVLSNG----VQFSRISPDGEEGYPGELKVWVTYTLDGGELI-VN 162
Query: 123 MEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPVDQNSIPTGEFLPVKG 182
A ++ATP+NL H+Y+NLAG S ++ DH + I PVD+ IPTGE PV+G
Sbjct: 163 YRA-QASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQG 221
Query: 183 TAFDFTSEKKIGNSITDVPGLGYDHNYVLDCGEEKIGLKHAAKVKDPSGSRVLDLWTDAP 242
TAFD ++G + D G+DHN+ L +EK A+V + RVL+++T P
Sbjct: 222 TAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEK---HFCARVHHAASGRVLEVYTTQP 278
Query: 243 GMQFYTANYVNG-VAGKEGAVYEKHSGLCLETQGFPNAINQSNFPSIVVQPGEKYKQTML 301
G+QFYT N+++G + GK GAVY KHSG CLETQ +P+A+NQ FP ++++PGE+Y T
Sbjct: 279 GVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTW 338
Query: 302 FEFSA 306
F+FS
Sbjct: 339 FKFSV 343
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
Length = 339
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 148/314 (47%), Gaps = 29/314 (9%)
Query: 3 DFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGPNS 62
D G D+VLGFD+I+ + KD + G VGRVANRI++ +G YT NNGP+
Sbjct: 41 DKNGKNQDLVLGFDTIDEFEKDAAS-IGKTVGRVANRIKNSTLHFDGKQYTXTPNNGPHY 99
Query: 63 LHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMRLD 122
LHGG G WEVV H S++F ++ + ++G PGD TY + + ++
Sbjct: 100 LHGGPNGLGYRKWEVVRHAP---ESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIE 156
Query: 123 MEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPVDQNSIPTGEFLPVKG 182
A + L H YWNL G S V +H L+ + VD PTG V
Sbjct: 157 HHATCDTPGL-LALTNHAYWNLDG--SDTVAEHFLEXEADEFVEVDDTFCPTGAIRSVTD 213
Query: 183 TAFDFTSEKKIGNSITDVPGLGYDHNYVLDCGEEKIGLKHAAKVKDPSGSRVLDLWTDAP 242
T FDF S K++ S G D +LD + + K K + S L W++
Sbjct: 214 TGFDFRSGKQLKES-------GKDAEELLDLDNDLVITK---KTPPSTPSTYLRFWSEKS 263
Query: 243 GMQ-----------FYTANYVNGVAGKEGAVYEKHSGLCLETQGFPNAINQSNFPSIVVQ 291
G++ Y + +++ GK+G Y+ + L +E Q A N +FP + ++
Sbjct: 264 GIELSITTSYPVIHLYASKFLD-CKGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSLR 322
Query: 292 PGEKYKQTMLFEFS 305
PG+ Y Q +++ FS
Sbjct: 323 PGDHYCQEIVYTFS 336
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
Length = 347
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 158/316 (50%), Gaps = 25/316 (7%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D++ + ++LGFDS + Y++ ++ Y G VG A RI+DG ++G Y L N GP
Sbjct: 34 IVDWQKDGKHLILGFDSAKEYLEKDA-YPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 92
Query: 61 NSLHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMR 120
+LHGG + LW G + F S DG GYPG + + T++ +
Sbjct: 93 QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 152
Query: 121 LDMEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPV-DQNSIPTGEFLP 179
+ EA+ +K T N H Y+NL G S V +H L++ S+ P+ DQ I G+ +
Sbjct: 153 IHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD 211
Query: 180 VKGTAFDFTSEKKIGNSI-TDVPGL----GYDHNYVLDCGEEKIGL-KHAAKVKDPSGSR 233
+K T DF EK++ N+ +++ + G DH ++LD ++GL K A++ S
Sbjct: 212 IKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLD----QLGLDKEQARLTLDDTS- 266
Query: 234 VLDLWTDAPGMQFYTANYVNGVAGKEGAVYEK-----HSGLCLETQGFPNAINQSNFPSI 288
+ ++TD P + +TAN+ G G +Y + H G+ E Q P + I
Sbjct: 267 -ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDI 320
Query: 289 VVQPGEKYKQTMLFEF 304
++ GEKY+ T ++
Sbjct: 321 SLKAGEKYQATTIYSL 336
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 158/316 (50%), Gaps = 25/316 (7%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D++ + ++LGFDS + Y++ ++ Y G VG A RI+DG ++G Y L N GP
Sbjct: 34 IVDWQKDGKHLILGFDSAKEYLEKDA-YPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 92
Query: 61 NSLHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMR 120
+LHGG + LW G + F S DG GYPG + + T++ +
Sbjct: 93 QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 152
Query: 121 LDMEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPV-DQNSIPTGEFLP 179
+ EA+ +K T N H Y+NL G S V +H L++ S+ P+ DQ I G+ +
Sbjct: 153 IHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD 211
Query: 180 VKGTAFDFTSEKKIGNSI-TDVPGL----GYDHNYVLDCGEEKIGL-KHAAKVKDPSGSR 233
+K T DF EK++ N+ +++ + G DH ++LD ++GL K A++ S
Sbjct: 212 IKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLD----QLGLDKEQARLTLDDTS- 266
Query: 234 VLDLWTDAPGMQFYTANYVNGVAGKEGAVYEK-----HSGLCLETQGFPNAINQSNFPSI 288
+ ++TD P + +TAN+ G G +Y + H G+ + Q P + I
Sbjct: 267 -ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITFQCQVSPGSEQIPELGDI 320
Query: 289 VVQPGEKYKQTMLFEF 304
++ GEKY+ T ++
Sbjct: 321 SLKAGEKYQATTIYSL 336
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 158/316 (50%), Gaps = 25/316 (7%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D++ + ++LGFDS + Y++ ++ Y G VG A RI+DG ++G Y L N GP
Sbjct: 34 IVDWQKDGKHLILGFDSAKEYLEKDA-YPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 92
Query: 61 NSLHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMR 120
+LHGG + LW G + F S DG GYPG + + T++ +
Sbjct: 93 QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 152
Query: 121 LDMEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPV-DQNSIPTGEFLP 179
+ EA+ +K T N H Y+NL G S V +H L++ S+ P+ DQ I G+ +
Sbjct: 153 IHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD 211
Query: 180 VKGTAFDFTSEKKIGNSI-TDVPGL----GYDHNYVLDCGEEKIGL-KHAAKVKDPSGSR 233
+K T DF EK++ N+ +++ + G +H ++LD ++GL K A++ S
Sbjct: 212 IKNTDLDFRQEKQLSNAFNSNMEQVQLVKGINHPFLLD----QLGLDKEQARLTLDDTS- 266
Query: 234 VLDLWTDAPGMQFYTANYVNGVAGKEGAVYEK-----HSGLCLETQGFPNAINQSNFPSI 288
+ ++TD P + +TAN+ G G +Y + H G+ E Q P + I
Sbjct: 267 -ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDI 320
Query: 289 VVQPGEKYKQTMLFEF 304
++ GEKY+ T ++
Sbjct: 321 SLKAGEKYQATTIYSL 336
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 155/318 (48%), Gaps = 29/318 (9%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D++ + ++LGFDS + Y++ ++ Y G VG A RI+DG ++G Y L N GP
Sbjct: 34 IVDWQKDGKHLILGFDSAKEYLEKDA-YPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 92
Query: 61 NSLHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMR 120
+LHGG + LW G + F S DG GYPG + + T++ +
Sbjct: 93 QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 152
Query: 121 LDMEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPV-DQNSIPTGEFLP 179
+ EA+ +K T N H Y+NL G S V +H L++ S+ P+ DQ I G+ +
Sbjct: 153 IHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD 211
Query: 180 VKGTAFDFTSEKKIGNSITD-------VPGLGYDHNYVLDCGEEKIGL-KHAAKVKDPSG 231
+K T DF EK++ N+ V G+ H ++LD ++GL K A++
Sbjct: 212 IKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIA--HPFLLD----QLGLDKEQARLTLDDT 265
Query: 232 SRVLDLWTDAPGMQFYTANYVNGVAGKEGAVYEK-----HSGLCLETQGFPNAINQSNFP 286
S + ++TD P + +TAN+ G G +Y + H G+ E Q P +
Sbjct: 266 S--ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITFECQVSPGSEQIPELG 318
Query: 287 SIVVQPGEKYKQTMLFEF 304
I ++ GEKY+ T ++
Sbjct: 319 DISLKAGEKYQATTIYSL 336
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS2|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS7|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
pdb|1NS7|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
Length = 347
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 157/316 (49%), Gaps = 25/316 (7%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D++ + ++LGFDS + Y++ ++ Y G VG A RI+DG ++G Y L N GP
Sbjct: 34 IVDWQKDGKHLILGFDSAKEYLEKDA-YPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 92
Query: 61 NSLHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMR 120
+LHGG + LW G + F S DG GYPG + + T++ +
Sbjct: 93 QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 152
Query: 121 LDMEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPV-DQNSIPTGEFLP 179
+ EA+ +K T N H Y+NL G S V +H L++ S+ P+ DQ I G+ +
Sbjct: 153 IHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD 211
Query: 180 VKGTAFDFTSEKKIGNSI-TDVPGL----GYDHNYVLDCGEEKIGL-KHAAKVKDPSGSR 233
+K T DF EK++ N+ +++ + G DH ++LD ++GL K A++ S
Sbjct: 212 IKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLD----QLGLDKEQARLTLDDTS- 266
Query: 234 VLDLWTDAPGMQFYTANYVNGVAGKEGAVYEK-----HSGLCLETQGFPNAINQSNFPSI 288
+ ++TD P + +TAN+ G G +Y + H G+ Q P + I
Sbjct: 267 -ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITFACQVSPGSEQIPELGDI 320
Query: 289 VVQPGEKYKQTMLFEF 304
++ GEKY+ T ++
Sbjct: 321 SLKAGEKYQATTIYSL 336
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 158/316 (50%), Gaps = 25/316 (7%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D++ + ++LGFDS + Y++ ++ Y G VG A RI+DG ++G Y L N GP
Sbjct: 34 IVDWQKDGKHLILGFDSAKEYLEKDA-YPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 92
Query: 61 NSLHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMR 120
+L+GG + LW G + F S DG GYPG + + T++ +
Sbjct: 93 QTLNGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 152
Query: 121 LDMEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPV-DQNSIPTGEFLP 179
+ EA+ +K T N H Y+NL G S V +H L++ S+ P+ DQ I G+ +
Sbjct: 153 IHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD 211
Query: 180 VKGTAFDFTSEKKIGNSI-TDVPGL----GYDHNYVLDCGEEKIGL-KHAAKVKDPSGSR 233
+K T DF EK++ N+ +++ + G DH ++LD ++GL K A++ S
Sbjct: 212 IKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLD----QLGLDKEQARLTLDDTS- 266
Query: 234 VLDLWTDAPGMQFYTANYVNGVAGKEGAVYEK-----HSGLCLETQGFPNAINQSNFPSI 288
+ ++TD P + +TAN+ G G +Y + H G+ E Q P + I
Sbjct: 267 -ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDI 320
Query: 289 VVQPGEKYKQTMLFEF 304
++ GEKY+ T ++
Sbjct: 321 SLKAGEKYQATTIYSL 336
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 158/316 (50%), Gaps = 25/316 (7%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D++ + ++LGFDS + Y++ ++ Y G VG A RI+DG ++G Y L N GP
Sbjct: 34 IVDWQKDGKHLILGFDSAKEYLEKDA-YPGATVGPTAGRIKDGLVKISGKDYILNQNEGP 92
Query: 61 NSLHGGNKGFDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMR 120
+LHGG + LW G + F S DG GYPG + + T++ +
Sbjct: 93 QTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWK 152
Query: 121 LDMEAVPKNKATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPV-DQNSIPTGEFLP 179
+ EA+ +K T N + Y+NL G S V +H L++ S+ P+ DQ I G+ +
Sbjct: 153 IHYEAIS-DKDTVFNPTGNVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD 211
Query: 180 VKGTAFDFTSEKKIGNSI-TDVPGL----GYDHNYVLDCGEEKIGL-KHAAKVKDPSGSR 233
+K T DF EK++ N+ +++ + G DH ++LD ++GL K A++ S
Sbjct: 212 IKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLD----QLGLDKEQARLTLDDTS- 266
Query: 234 VLDLWTDAPGMQFYTANYVNGVAGKEGAVYEK-----HSGLCLETQGFPNAINQSNFPSI 288
+ ++TD P + +TAN+ G G +Y + H G+ E Q P + I
Sbjct: 267 -ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDI 320
Query: 289 VVQPGEKYKQTMLFEF 304
++ GEKY+ T ++
Sbjct: 321 SLKAGEKYQATTIYSL 336
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 150/303 (49%), Gaps = 28/303 (9%)
Query: 10 DIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGPNSLHGGNKG 69
+++L +S E Y K+ + + G VGR+A R+R G++ + LP+N+G N +HGG G
Sbjct: 49 NMILSLNSPEDYSKERN-FLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGG-IG 106
Query: 70 FDKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKTMRLDMEAVPKN 129
D +W+ D +H + DG YPG++ A Y L + + +EAV +
Sbjct: 107 TDMHVWDFRPSCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAV-SD 165
Query: 130 KATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPVDQNSIPTGEFLPVKGTAFDFTS 189
K T N HTY+NL G + D+ +LQ+ PVD+ +P V GTAFDF
Sbjct: 166 KLTIFNPVNHTYFNL-GERAEDL---NLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRK 221
Query: 190 EKKIGNSI-TDVPGL----GYDHNYVLDCGEEKIGLKHAAKVKDPSGSRVLDLWTDAPGM 244
K+IG+++ +D + G DH ++L+ G AA + S L + T+AP +
Sbjct: 222 TKRIGDALNSDDSQIKLRNGLDHPFILN------GNNPAALLS--SNKHRLIVKTNAPAL 273
Query: 245 QFYTANYVN--GVAGKEGAVYEKHSGLCLETQGFPNAINQSNFPSIVVQPGEKYKQTMLF 302
Y N+ N G+ G ++ G+ E Q P N + I + P EK+K+T+ +
Sbjct: 274 VLYAGNHFNHTGIVNNIG----QYDGITFEAQCPPAEGN--DLGQITLLPFEKFKRTVDW 327
Query: 303 EFS 305
+F
Sbjct: 328 KFE 330
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 148/320 (46%), Gaps = 30/320 (9%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D K N +VLG+++ E Y+ +S Y G +GR ANRI GKF+L Y L VNNG
Sbjct: 395 IVDLKVNGQSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGV 454
Query: 61 NSLHGGNKGF--DKVLWEVVEHKDGDHPSITFKYQSRDGEEGYPGDVTATATYALTSSKT 118
N+ H F + L ++++ D + + + + +PGD+ T Y + ++
Sbjct: 455 NANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQK 514
Query: 119 MRLDMEAVPKNK-----ATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPVDQNSIP 173
+E V K K ATPINL H+Y+NL + + + + VD+N IP
Sbjct: 515 ---SLEIVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIP 571
Query: 174 TGEFLPVKGTAFDFTSEKKIGNSITDVPGLGYDHNYVLD--CGEEKIG-----LKHAAKV 226
TG + + F+ T +G +D +V+D +I L K
Sbjct: 572 TGNIVDREIATFNSTKPTVLGPK-----NPQFDCCFVVDENAKPSQINTLNNELTLIVKA 626
Query: 227 KDPSGSRVLDLWTDAPGMQFYTANYVNGVAGKEGAVYEKHSGLCLETQGFPNAINQSNFP 286
P + L++ + P QFYT ++++ A YE G +E + +AINQ N+
Sbjct: 627 FHPDSNITLEVLSTEPTYQFYTGDFLS-------AGYEARQGFAIEPGRYIDAINQENWK 679
Query: 287 SIV-VQPGEKYKQTMLFEFS 305
V ++ GE Y +++ FS
Sbjct: 680 DCVTLKNGETYGSKIVYRFS 699
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 143/323 (44%), Gaps = 33/323 (10%)
Query: 1 MLDFKGNVADIVLGFDSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGP 60
++D K N +V G+ +++ Y+ D + G VGR ANRI G F+L+ + L VNN
Sbjct: 32 LVDLKVNGQSVVQGYSNVQDYLTDGN-MMGATVGRYANRIAKGVFSLDDGPHKLTVNNCG 90
Query: 61 NSLHGGNKGFDKVLWEV--VEHKDGDHPSITFKY---QSRDGEEGYPGDVTATATYALTS 115
N+ H + ++ VE+ + FK ++ +PGD+ T Y L
Sbjct: 91 NTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNV 150
Query: 116 SKTMRLDME---AVPKNKATPINLAQHTYWNLAGHNS-GDVLDHSLQIWGSQITPVDQNS 171
++ M LDME + + ATPIN+ H+Y+NL S + +++ ++ V + +
Sbjct: 151 AE-MTLDMEYQAQLVRGDATPINMTNHSYFNLNKVKSEKSIRGTEVKVCSNKSLEVTEGA 209
Query: 172 -IPTGEFLPVKGTAFDFTSEKKIGNSITDVPGLGYDHNYVLDCGEEKIGLKHAA------ 224
+PTG+ + FD T + D P +D +++D ++ +
Sbjct: 210 LLPTGKIIERNIATFDSTKPTVLHE---DTP--VFDCTFIIDANKDLKTTDSVSVNKLVP 264
Query: 225 --KVKDPSGSRVLDLWTDAPGMQFYTANYVNGVAGKEGAVYEKHSGLCLETQGFPNAINQ 282
K P ++ T P + YT + + GK + SG ++ + +AIN+
Sbjct: 265 VFKAYHPESHIKFEVSTTEPTVHLYTG---DNLCGK----FVPRSGFAVQQGRYVDAINR 317
Query: 283 SNFP-SIVVQPGEKYKQTMLFEF 304
+ ++++ GE Y ++F
Sbjct: 318 DEWRGCVLLKRGEVYTSKTQYKF 340
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 22 MKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVNNGPNS--LHGGNKGFDKVLWEVVE 79
K+ +G V NRI DG F L Y P+N N+ +HG K W V +
Sbjct: 65 FKNRPQVYGLPVLFPPNRIDDGTFKLGDKTYKFPINEAKNNNYIHGFIKNSK---WTVHK 121
Query: 80 HK-DGDHPSITFKYQSRDGEEGYP---GDVTATATYALTSSKTMRLDMEAVPKNKATPIN 135
K D D + + E Y + +Y L+S + ++ P++
Sbjct: 122 KKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNLSSEEXPLS 181
Query: 136 LAQHTYWNLAGHNSGDVLDHSLQIWGSQITPVDQNSIPTGE-FLP 179
+ H+ +N+ + + ++I + D ++PTGE F P
Sbjct: 182 VGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAP 226
>pdb|1W99|A Chain A, Mosquito-Larvicidal Toxin Cry4ba From Bacillus
Thuringiensis Ssp. Israelensis
Length = 558
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 153 LDHSLQIWGSQITPVDQNSIPTGEFLPVKGTAFDFTSEKKIGN--SITDVPG-LGYDHNY 209
+D +L + S ITP P G ++ T F F++ + N ++ D L Y
Sbjct: 318 IDGTLASYNSNITPT-----PEG----LRTTFFGFSTNENTPNQPTVNDYTHILSYIKTD 368
Query: 210 VLDCGEEKIGLKHAAKVKDPSGSRVLDLWTDAPGMQFYTANYVNGVA 256
V+D ++ K+ DP+ D T P ++ +N++N A
Sbjct: 369 VIDYNSNRVSFAWTHKIVDPNNQIYTDAITQVPAVK---SNFLNATA 412
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 30 GCIVGRVANRIRDGKFALNGV 50
GC VG + I+DG+F +NGV
Sbjct: 330 GCEVGFRTSEIKDGRFCINGV 350
>pdb|3MWX|A Chain A, Crystal Structure Of A Putative Galactose Mutarotase
(Bsu18360) From Bacillus Subtilis At 1.45 A Resolution
pdb|3MWX|B Chain B, Crystal Structure Of A Putative Galactose Mutarotase
(Bsu18360) From Bacillus Subtilis At 1.45 A Resolution
Length = 326
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 16/171 (9%)
Query: 16 DSIESYMKDNSPYFGCIVGRVANRIRDGKFALNGVHYTLPVN--NGPNSLHGGNKGFDKV 73
++ ES+ D +G + NRI DG F+ G Y +N + N LHG
Sbjct: 53 ETAESF-HDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHG---FLYHE 108
Query: 74 LWEVVEHKDGDHPSITFK----YQSRDGEEGYPGDVTATATYALTSSKTMRLDMEAVPKN 129
W VV K D I + ++ +P TY + + +
Sbjct: 109 KWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRXTYTIKENTLFKHATVXNKGK 168
Query: 130 KATPINLAQHTYWNLAGHNSGDVLDHSLQIWGSQITPVDQNSIPTGEFLPV 180
+A P + HT + +S + Q +D+ +PTG+ V
Sbjct: 169 EAFPWGIGYHTTFIFPAESS------LFSLTADQQWELDERLLPTGKLXDV 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,682,384
Number of Sequences: 62578
Number of extensions: 496628
Number of successful extensions: 809
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 18
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)