BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021841
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 150/304 (49%), Gaps = 38/304 (12%)
Query: 31 PGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTR 90
PGL +FY TCP+AE I+RE V+ ++ A LR FHDC VQ CDAS+LLD +
Sbjct: 7 PGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSA 66
Query: 91 KTLSEKEMDRSFGMR-------------------------------NFRDGVVALGGPYI 119
E++ + +R RD VV GGP
Sbjct: 67 TGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 120 PLKTGRRDGRK--SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTH 177
+ GRRD R S ++L LP + ++ +L +G+DA LV + G H++G H
Sbjct: 127 RVPLGRRDSRSFASTQDVLSD-LPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAH 185
Query: 178 CVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 237
C RL+P DP ++P + + CP D + V VR TP V DN YY +++
Sbjct: 186 CSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVR----TPNVFDNKYYIDLV 241
Query: 238 DNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVC 297
+ +GL + D L T+ TRP V++ A+SQ FF++F +I + + T +GE+R+ C
Sbjct: 242 NREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
Query: 298 NLAN 301
++ N
Sbjct: 302 SVRN 305
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 132/297 (44%), Gaps = 39/297 (13%)
Query: 37 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEK 96
FY TCP A I+R ++ + S +R FHDC V CDAS+LLD T SEK
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEK 66
Query: 97 EMD------RSF--------GMRNFRDGVVAL---------------GGPYIPLKTGRRD 127
R F + N GVV+ GGP + GRRD
Sbjct: 67 NAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRD 126
Query: 128 GRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY- 186
+ +P +S+S + +F+A+G++ LVAL G+H+ GR C +RL+
Sbjct: 127 SLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFN 186
Query: 187 ----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL 242
DP LN + + CP + A D TP DNNY+ N+ N GL
Sbjct: 187 FSGTGNPDPTLNSTLLSTLQQLCPQ---NGSASTITNLDLSTPDAFDNNYFANLQSNDGL 243
Query: 243 MMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVC 297
+ D +L T T V A +Q FF+ F++++ + +PLTG+ GEIR C
Sbjct: 244 LQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDC 300
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 134/305 (43%), Gaps = 39/305 (12%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY TCP A ++R V+ ++ S +R FHDC V CDAS+LLD++
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 93 LSEKEMD------RSF--------GMRNFRDGVVAL---------------GGPYIPLKT 123
+SEK R F + N GVV+ GGP +
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 124 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVH 183
GRRD + +P +S + +F+A+G++ LVAL G+H+ GR C +
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 184 RLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 238
RL+ DP LN + + CP + D TP DNNY+ N+
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQ---KGRGSGSTNLDLSTPDAFDNNYFTNLQS 240
Query: 239 NKGLMMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKV 296
N GL+ D +L T T V A +Q FF+ F++++ + +PLTG+ GEIR
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLD 300
Query: 297 CNLAN 301
C N
Sbjct: 301 CKKTN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 122/294 (41%), Gaps = 34/294 (11%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L NFY CP A I+ V + S LR FHDC VQ CDAS+LLD T
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 93 LSEKEMD-RSFGMRNF----------------------------RDGVVALGGPYIPLKT 123
EK + +R F RD VVALGG +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 124 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVH 183
GRRD + LP ++S ++ F+ G LV L G+H++G+ C
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 184 RLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLM 243
R+Y E + ++P + + CP D + D TP DN YY N+ + KGL+
Sbjct: 182 RIYNESN--IDPTYAKSLQANCPSVGGDTNLSPF---DVTTPNKFDNAYYINLRNKKGLL 236
Query: 244 MVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVC 297
D QL T V + + F +F A+ + +PLTGT G+IR C
Sbjct: 237 HSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNC 290
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 142/319 (44%), Gaps = 54/319 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 290 KGEIRKVCNLANK---LHD 305
+G+IR C + N LHD
Sbjct: 294 QGQIRLNCRVVNSNSLLHD 312
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 SIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G HS G+ C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCR 178
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCR 178
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDMDLRTPTIFDNKYYV 236
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 137/304 (45%), Gaps = 35/304 (11%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L + FY +CP AE ++++ V + + A +R FHDC V+ CDAS+LLDST
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 93 LSEKE-MDRSFGMRNF----------------------------RDGVVALGGPYIPLKT 123
+EK+ + + +R F RD G + +
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 124 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVH 183
GRRDG S A +P + + ++ FA + A +V L G+HS+G HC +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 184 RLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 238
RLY +DP L+P + + + CP + V D TP VLDN YY +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPIT-VSLDIITPSVLDNMYYTGVQL 240
Query: 239 NKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 298
GL+ D L T+ VK A + + +F++A+ + + LTGT+GEIR C+
Sbjct: 241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
Query: 299 LANK 302
+ N
Sbjct: 301 VVNS 304
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 138/313 (44%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR F DC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 137/313 (43%), Gaps = 51/313 (16%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S L F DC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFGMRNFRDG--------------------------------VVALGGPYIP 120
+EK+ +FG N G V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 121 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCV 179
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 180 KLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ RLY DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 235 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 289
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 290 KGEIRKVCNLANK 302
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 135/306 (44%), Gaps = 51/306 (16%)
Query: 36 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLL---DSTRKT 92
+ Y +CP I+R+QV + K A S +R FHDC V CDASLLL DS +
Sbjct: 5 DIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSEKLA 64
Query: 93 LSEKEMDRSFGMRN-----------------------FRDGVVALGGPYIPLKTGRRDGR 129
+ R F + + RD VV GGP + GR+DG
Sbjct: 65 IPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRKDGL 124
Query: 130 KSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEV 189
+ LP + + ++ +F A+ ++ +VAL G+H+ G+ C +RL+
Sbjct: 125 VANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLF-NF 182
Query: 190 DPALNPDH------VPHMLHKCP----DAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN 239
A NPD + ++ CP I P DR T DNNY++N+L+
Sbjct: 183 TGAGNPDATLETSLLSNLQTVCPLGGNSNITAPL-------DRSTTDTFDNNYFKNLLEG 235
Query: 240 KGLMMVDHQLATD----KRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRK 295
KGL+ D L + T+ V+ ++SQ FF++F+ A ++ N G GE+R
Sbjct: 236 KGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCA--MIRMGNISNGASGEVRT 293
Query: 296 VCNLAN 301
C + N
Sbjct: 294 NCRVIN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 129/305 (42%), Gaps = 39/305 (12%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY++TCP I+ + S +R FHDC VQ CD S+LL++T
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 93 LSEKE----MDRSFGMRNFRDGVVAL-------------------------GGPYIPLKT 123
SE++ ++ G+ D A+ GGP P+
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 124 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVH 183
GRRD + + Q LP +++ + FA G++ LV L G H+ GR C ++
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 184 RLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 238
RLY DP LN ++ + +CP + D TP DN YY N+L
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLSTPDQFDNRYYSNLLQ 238
Query: 239 NKGLMMVDHQLAT--DKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKV 296
GL+ D +L + T P V + +Q+ FF F ++ + LTG +GEIR
Sbjct: 239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQ 298
Query: 297 CNLAN 301
CN N
Sbjct: 299 CNFVN 303
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 114 LGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 173
+GGP IP GR D + + LPD + + S V E F +G + VAL+G+H+
Sbjct: 103 MGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTC 162
Query: 174 GRTHC-VKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNY 232
G TH H + + +L + D + +PK Q DR T ++
Sbjct: 163 GETHIEFSGYHGPWTHDKNGFDNSFFTQLLDE--DWVLNPKVEQMQLMDRATTKLM---- 216
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 282
++ D L D R YV+ AK D F K+F+ A L+E
Sbjct: 217 ---------MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTE 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 114 LGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 173
+GGP IP GR D + + LPD + + S V E F +G + VAL+G+H+
Sbjct: 103 MGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTC 162
Query: 174 GRTHC-VKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNY 232
G H H + + +L + D + +PK Q DR T ++
Sbjct: 163 GECHIEFSGYHGPWTHDKNGFDNSFFTQLLDE--DWVLNPKVEQMQLMDRATTKLM---- 216
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 282
++ D L D R YV+ AK D F K+F+ A L+E
Sbjct: 217 ---------MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTE 257
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 114 LGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 173
+GGP IP GR D + + LPD + + S V E F +G + VAL+G+H+
Sbjct: 102 MGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTC 161
Query: 174 GRTHC-VKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNY 232
G H H + + +L + D + +PK Q DR T ++
Sbjct: 162 GECHIEFSGYHGPWTHDKNGFDNSFFTQLLDE--DWVLNPKVEQMQLMDRATTKLM---- 215
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 282
++ D L D R YV+ AK D F K+F+ A L+E
Sbjct: 216 ---------MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTE 256
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y P V DN
Sbjct: 175 HTLGKTHL----------------------------------KNSGYEGPWTANPNVFDN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
++Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 SFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 100 GVVAVEITGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLSDQDIV 156
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 157 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 182
Query: 226 MVLDNNYYRNILDNK--GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + GL+ + D L TD RP V+K A +D FF +++ A LS
Sbjct: 183 LIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLS 242
Query: 282 E 282
E
Sbjct: 243 E 243
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 112 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 168
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H +A + P
Sbjct: 169 ALSGGHTIGAAHK----------------------------------EASGFEGPWTSNP 194
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 282 E 282
E
Sbjct: 255 E 255
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y T V DN
Sbjct: 175 HTLGKTHL----------------------------------KNSGYEGPWDATNNVFDN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
++Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 SFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 100 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 156
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 157 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 182
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 183 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 282 E 282
E
Sbjct: 243 E 243
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 100 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 156
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 157 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 182
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 183 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 282 E 282
E
Sbjct: 243 E 243
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 112 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 168
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 169 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 194
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 282 E 282
E
Sbjct: 255 E 255
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 100 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 156
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 157 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 182
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 183 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 282 E 282
E
Sbjct: 243 E 243
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 112 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 168
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 169 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 194
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 282 E 282
E
Sbjct: 255 E 255
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 112 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 168
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 169 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 194
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 282 E 282
E
Sbjct: 255 E 255
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 112 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 168
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 169 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 194
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 282 E 282
E
Sbjct: 255 E 255
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 112 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 168
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 169 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 194
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 282 E 282
E
Sbjct: 255 E 255
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 100 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 156
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 157 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 182
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 183 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 282 E 282
E
Sbjct: 243 E 243
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 110 GVVAL---GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA-AIGIDAPGLV 165
GVVA+ GGP +P GR D + E LPD + + F A+G+ +V
Sbjct: 112 GVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKGSDHLRDVFGKAMGLTDQDIV 168
Query: 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 225
AL G H++G H K P + N P
Sbjct: 169 ALSGGHTIGAAH--------------------------KERSGFEGP----WTSN----P 194
Query: 226 MVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A LS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 282 E 282
E
Sbjct: 255 E 255
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH + + ++ P + N+ V DN
Sbjct: 175 HTLGKTH--------------------LKNSGYEGP----------WTANNN----VFDN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
++Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 SFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N + + K + + D + N
Sbjct: 172 HALGKTH---LKNSGYEGPWGAAN------------NVFTNEKYLNLLNEDW---KLEKN 213
Query: 231 NYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
+ D+K G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 214 DANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 172 HALGKTH---LKNSGYEGPWGAAN-------------------------------NVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
YY N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 258 DFSKAFEKLLEN 269
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD++ V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDYDKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 175 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPQGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 175 HALGKTH---LKNSGYEGPGGAAN-------------------------------NVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 36/183 (19%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH + + ++ P A V + G +L+
Sbjct: 175 HALGKTH--------------------LKNSGYEGPWG-----AANNVFTNEGYLNLLNE 209
Query: 231 NY--YRNILDNK------GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 280
++ +N +N+ G MM+ D+ L D + VK+ A QD FFK+FS+A L
Sbjct: 210 DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
Query: 281 SEN 283
EN
Sbjct: 270 LEN 272
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPGGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + + + + + ++L++ + +ND
Sbjct: 175 HALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEN---------WKLEKNDANNEQ--- 222
Query: 230 NNYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
D+K G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 223 -------WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 56/192 (29%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 119 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 177
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH + G V N
Sbjct: 178 HALGKTHLKNSGYE------------------------------------GGGANNVFTN 201
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 202 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 261
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 262 DFSKAFEKLLEN 273
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH + + ++ P + N+ V DN
Sbjct: 175 HTLGKTH--------------------LKNSGYEGP----------WTANNN----VFDN 200
Query: 231 NYYRNIL----------------DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFK 271
++Y N+L D+K + D+ L D + VK+ A QD FFK
Sbjct: 201 SFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + + + + + ++L++ + +ND
Sbjct: 177 HALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEN---------WKLEKNDANNEQ--- 224
Query: 230 NNYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
D+K G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 225 -------WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 56/192 (29%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH + G V N
Sbjct: 172 HALGKTHLKNSGYE------------------------------------GGGANNVFTN 195
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 196 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 255
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 256 DFSKAFEKLLEN 267
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 56/192 (29%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 114 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 172
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH + G V N
Sbjct: 173 HALGKTHLKNSGYE------------------------------------GGGANNVFTN 196
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 197 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 256
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 257 DFSKAFEKLLEN 268
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + + + + + ++L++ + +ND
Sbjct: 172 HALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNE---------DWKLEKNDANNEQ--- 219
Query: 230 NNYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
D+K G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 220 -------WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRAGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N C ++ N L+
Sbjct: 175 HALGKTH---LKNSGYEGPWGAAN---------NC-------FTNEFYLNLLNEDWKLEK 215
Query: 231 NYYRN-ILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
N N D+K G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 175 HALGKTH---LKNSGYEGPWGAAN-------------------------------NVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 175 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 119 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 177
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 178 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 203
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 204 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 263
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 264 DFSKAFEKLLEN 275
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDMDKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 175 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + + + + + ++L++ + +ND
Sbjct: 177 HALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNE---------DWKLEKNDANNEQ--- 224
Query: 230 NNYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
D+K G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 225 -------WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 172 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 258 DFSKAFEKLLEN 269
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 115 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 173
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 174 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 199
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 200 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 259
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 260 DFSKAFEKLLEN 271
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 175 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 175 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 175 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPFGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 175 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRAGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH + + ++ P + V N
Sbjct: 177 HALGKTH--------------------LKNSGYEGPWGCAN--------------NVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 109 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 167
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + + + + + ++L++ + +ND
Sbjct: 168 HALGKTHLKRSGYEGPFGAANNVFTNEFYLNLLNE---------DWKLEKNDA------- 211
Query: 230 NNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
NN + ++ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 212 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 265
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 115 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 173
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + + + + + ++L++ + +ND
Sbjct: 174 HALGKTHLKRSGYEGPFGAANNVFTNEFYLNLLNE---------DWKLEKNDANNEQ--- 221
Query: 230 NNYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
D+K G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 222 -------WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLEN 271
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 73/196 (37%), Gaps = 57/196 (29%)
Query: 110 GVVALG---GPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVA 166
GV A+ GP IP + GR D + + LPD + V F + ++ +VA
Sbjct: 114 GVTAVQEWQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVA 172
Query: 167 LLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPM 226
L+G+H++G+TH K Y
Sbjct: 173 LMGAHALGKTHL----------------------------------KNSGYEGPWGAANN 198
Query: 227 VLDNNYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQD 267
V N +Y N+L+ G MM+ D+ L D + VK+ A QD
Sbjct: 199 VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 268 YFFKEFSRAITLLSEN 283
FFK+FS+A L EN
Sbjct: 259 KFFKDFSKAFEKLLEN 274
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 172 HALGKTHL----------------------------------KNSGYEGPQGAANNVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L E+
Sbjct: 258 DFSKAFEKLLED 269
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 175 HALGKTH---LKNSGYEGPGGAAN-------------------------------NVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L E+
Sbjct: 261 DFSKAFEKLLED 272
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 175 HALGKTH---LKNSGYEGPGGAAN-------------------------------NVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ ++ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 114 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 172
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 173 HALGKTH---LKNSGYEGPGGAAN-------------------------------NVFTN 198
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 199 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 258
Query: 272 EFSRAITLLSEN 283
+FS+A L E+
Sbjct: 259 DFSKAFEKLLED 270
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + + + + ++L++ + +ND
Sbjct: 177 HALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNE---------DWKLEKNDA------- 220
Query: 230 NNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
NN + ++ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 221 NNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + Y + + ++L+ + + +ND
Sbjct: 172 HALGKTHLKNSGYEGPYGAANNVFTNEFYLNLLN---------EDWKLEKNDANNEQ--- 219
Query: 230 NNYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
D+K G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 220 -------WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 172 HALGKTH---LKNSGYEGPGGAAN-------------------------------NVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L E+
Sbjct: 258 DFSKAFEKLLED 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALSGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH + + ++ P + N+ V DN
Sbjct: 175 HTLGKTH--------------------LKNSGYEGP----------WTANNN----VFDN 200
Query: 231 NYYRNIL----------------DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFK 271
++Y N+L D+K + D+ L D + VK+ A QD FFK
Sbjct: 201 SFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 261 DFSKAFEKLLEN 272
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 119 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 177
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 178 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 203
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ ++ L D + VK+ A QD FFK
Sbjct: 204 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFK 263
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 264 DFSKAFEKLLEN 275
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 73/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALKGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 172 HALGKTH---LKNSGYEGPWGAAN-------------------------------NVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 258 DFSKAFEKLLEN 269
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 118 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 177 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 202
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ ++ L D + VK+ A QD FFK
Sbjct: 203 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 263 DFSKAFEKLLEN 274
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 172 HALGKTH---LKNSGYEGPWGAAN-------------------------------NVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L E+
Sbjct: 258 DFSKAFEKLLED 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 175 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 200
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 201 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 272 EFSRAITLLSEN 283
+FS+A L E+
Sbjct: 261 DFSKAFEKLLED 272
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 172 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L E+
Sbjct: 258 DFSKAFEKLLED 269
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 42/182 (23%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSV--VLERFAAIGIDAPGLVALLGSHS 172
GGP IP+K GR D + E LPD + + F +G++ +VAL G+H+
Sbjct: 105 GGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVFYRMGLNDKEIVALSGAHT 164
Query: 173 VGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP------- 225
+GR+ P+ P+ +Y ++ G P
Sbjct: 165 LGRSR---------PDRSGWGKPE------------------TKYTKDGPGAPGGQSWTA 197
Query: 226 --MVLDNNYYRNILDNKG----LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITL 279
+ DN+Y+++I + + ++ D L D + Y +K A + FFK+++ A
Sbjct: 198 QWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAK 257
Query: 280 LS 281
LS
Sbjct: 258 LS 259
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 70/192 (36%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH K Y V N
Sbjct: 172 HALGKTHL----------------------------------KNSGYEGPWGAANNVFTN 197
Query: 231 NYYRNIL----------------DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L D+K M D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 258 DFSKAFEKLLEN 269
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+T +L + Y A N V N
Sbjct: 172 HALGKT---ELKNSGYEGPWGAAN-------------------------------NVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 258 DFSKAFEKLLEN 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 116 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HSVGRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229
H++G+TH + + + + + ++L+ + + +ND
Sbjct: 175 HALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLN---------EDWKLEKNDANNEQ--- 222
Query: 230 NNYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 283
D+K G MM+ + L D + VK+ A QD FFK+FS+A L EN
Sbjct: 223 -------WDSKSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 119 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 177
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
H++G+TH L + Y A N V N
Sbjct: 178 HALGKTH---LKNSGYEGPWGAAN-------------------------------NVFTN 203
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ + L D + VK+ A QD FFK
Sbjct: 204 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFK 263
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 264 DFSKAFEKLLEN 275
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 114 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 172
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
++G+TH L + Y A N V N
Sbjct: 173 GALGKTH---LKNSGYEGPWGAAN-------------------------------NVFTN 198
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 199 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 258
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 259 DFSKAFEKLLEN 270
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 114 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 172
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
++G+TH L + Y A N V N
Sbjct: 173 GALGKTH---LKNSGYEGPWGAAN-------------------------------NVFTN 198
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 199 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 258
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 259 DFSKAFEKLLEN 270
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 54/192 (28%)
Query: 111 VVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGS 170
V + GP IP + GR D + + LPD + V F + ++ +VAL+G+
Sbjct: 113 VQEMQGPKIPWRCGRVDTPEDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 230
++G+TH L + Y A N V N
Sbjct: 172 GALGKTH---LKNSGYEGPWGAAN-------------------------------NVFTN 197
Query: 231 NYYRNILDN-----------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFK 271
+Y N+L+ G MM+ D+ L D + VK+ A QD FFK
Sbjct: 198 EFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 272 EFSRAITLLSEN 283
+FS+A L EN
Sbjct: 258 DFSKAFEKLLEN 269
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 110 GVVAL----GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GL 164
G VAL G P + GR + K+ A + + +P+ DS++ +L+RF G P +
Sbjct: 110 GAVALSNCPGAPRLEFLAGRPN--KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEV 166
Query: 165 VALLGSHSVGRTH 177
V+LL SHSV R +
Sbjct: 167 VSLLASHSVARAN 179
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 110 GVVAL----GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GL 164
G VAL G P + GR + K+ A + + +P+ DS++ +L+RF G P +
Sbjct: 110 GAVALSNCPGAPRLEFLAGRPN--KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEV 166
Query: 165 VALLGSHSVGRTH 177
V+LL SHSV R +
Sbjct: 167 VSLLASHSVARAN 179
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GGP + GR + + + L +PD DS +L R A IG +V LL SHS+
Sbjct: 123 GGPRLQFLAGRSNISQPSPDGL---VPDPTDSADKILARMADIGFSPTEVVHLLASHSIA 179
Query: 175 RTH 177
+
Sbjct: 180 AQY 182
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 110 GVVAL----GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GL 164
G VAL G P + GR + K+ A + + +P+ DS++ +L+RF G P +
Sbjct: 110 GAVALSNCPGAPRLEFLAGRPN--KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEV 166
Query: 165 VALLGSHSVGRT 176
V+LL SHSV R
Sbjct: 167 VSLLASHSVARA 178
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 152 ERFAAIGIDAPGLVALLGSHSVGRTHCVKLV 182
ERFA +GID P + L G G+T C + V
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAV 263
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 20/169 (11%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEGFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVRNDRGTPMVLDN-NY 232
+VDP+ +P P+ ++ R P DN
Sbjct: 173 AAD----------KVDPS-----IPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ L + + DH LA D +T + M +Q F+ ++ ++
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 25/175 (14%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVRNDRGTPMVLDN-NY 232
+VDP+ +P P ++ R P DN
Sbjct: 173 AAD----------KVDPS-----IPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 233 YRNILDNKGLMMVDHQLATDKRT----RPYVKKMAKSQDYFFKEFSRAITLLSEN 283
++ L + + DH LA D +T + +V K Q+ F S+ + LL ++
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSFVNNQPKIQNRFAATMSK-MALLGQD 271
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 36/177 (20%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
+VDP++ P D+ P+ Q+ + L +
Sbjct: 173 AAD----------KVDPSIP--GTPF------DSTPEVFDSQFFIETQ-----LKGRLFP 209
Query: 235 NILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
DNKG + DH LA D +T + M +Q F+ ++ ++
Sbjct: 210 GTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 36/177 (20%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPQDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
+VDP++ P D+ P Q+ + L +
Sbjct: 173 AAD----------KVDPSIP--GTPF------DSTPGVFDSQFFIETQ-----LKGRLFP 209
Query: 235 NILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
DNKG + DH LA D +T + M +Q F+ ++ ++
Sbjct: 210 GTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 36/177 (20%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
+VDP++ P D+ P+ Q+ + L +
Sbjct: 173 AAD----------KVDPSI--PGTPF------DSTPEVFDSQFFIETQ-----LKGRLFP 209
Query: 235 NILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
DNKG + DH LA D +T + M +Q F+ ++ ++
Sbjct: 210 GTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 36/177 (20%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V+LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
+VDP++ P D+ P Q+ + L +
Sbjct: 173 AAD----------KVDPSI--PGTPF------DSTPGVFDSQFFIETQ-----LKGRLFP 209
Query: 235 NILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
DNKG + DH LA D +T + M +Q F+ ++ ++
Sbjct: 210 GTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVRNDRGTPMVLDN-NY 232
VDP+ +P P+ ++ R P DN
Sbjct: 173 AAD----------GVDPS-----IPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ L + + DH LA D +T + M +Q F+ ++ ++
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVRNDRGTPMVLDN-NY 232
+VDP+ +P P+ ++ R P DN
Sbjct: 173 AAD----------KVDPS-----IPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ L + + DH LA D +T + M +Q F+ ++ ++
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 63/177 (35%), Gaps = 36/177 (20%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
++ P + P D P + Q+ + L +
Sbjct: 173 A------ADKVDPSI-PGTPFDSTPQVFDS-----------QFFIETQ-----LKGRLFP 209
Query: 235 NILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
DNKG + DH LA D +T + M +Q F+ ++ ++
Sbjct: 210 GTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVRNDRGTPMVLDN-NY 232
+VDP+ +P P+ ++ R P DN
Sbjct: 173 AAD----------KVDPS-----IPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ L + + DH LA D +T + M +Q F+ ++ ++
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 36/177 (20%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
+VDP++ P D+ P Q+ + L +
Sbjct: 173 AAA----------KVDPSI--PGTPF------DSTPGVFDSQFFIETQ-----LKGRLFP 209
Query: 235 NILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
DNKG + DH LA D +T + M +Q F+ ++ ++
Sbjct: 210 GTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3ABO|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABO|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABQ|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABQ|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABR|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABR|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABS|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ABS|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
Length = 306
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 14/134 (10%)
Query: 75 CAVQSCDASLLLDSTRKTLSEKEMDRSFGMRN--FRDGVVALGGPYIPLKTGRRDGRKSR 132
CA +C A + +S L E G+ N D + L + R G + R
Sbjct: 40 CATTNCAAPVTSESCALDLGSAEAKAWIGVENPHRADVLTELRRSTVARVCTGRAGPRPR 99
Query: 133 AEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHS----------VGRTHCVKLV 182
+ L ++L DH+ S VL+ + A GL+ + S +GR C + V
Sbjct: 100 TQALLRFLADHSRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDMGRRLCAEAV 159
Query: 183 HRLYPEVDPALNPD 196
L + NPD
Sbjct: 160 EALKAQC--VANPD 171
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 36/177 (20%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234
+VDP++ P D+ P Q+ + L +
Sbjct: 173 AAD----------KVDPSIP--GTPF------DSTPGVFDSQFFIETQ-----LKGRLFP 209
Query: 235 NILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
DNKG + DH LA D +T + M +Q F+ ++ ++
Sbjct: 210 GTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P+ DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVRNDRGTPMVLDN-NY 232
+VDP+ +P P ++ R P DN
Sbjct: 173 AAD----------KVDPS-----IPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ L + + DH LA D +T + M +Q F+ ++ ++
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 20/169 (11%)
Query: 115 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVG 174
GG IP GR D + + L +P DS+ +L R G +V LL SHS+
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 175 RTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVRNDRGTPMVLDN-NY 232
VDP+ +P P+ ++ R P DN
Sbjct: 173 AAD----------GVDPS-----IPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGE 217
Query: 233 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 281
++ L + + DH LA D +T + M +Q F+ ++ ++
Sbjct: 218 AQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,792,407
Number of Sequences: 62578
Number of extensions: 364947
Number of successful extensions: 1042
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 209
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)