Query 021841
Match_columns 307
No_of_seqs 190 out of 1443
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2.1E-96 5E-101 697.8 19.6 266 29-301 21-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2.8E-89 6.2E-94 646.4 20.3 265 32-300 1-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 5.7E-61 1.2E-65 449.8 14.1 208 45-298 14-257 (289)
4 PF00141 peroxidase: Peroxidas 100.0 1E-61 2.2E-66 444.0 3.4 200 49-265 1-230 (230)
5 cd00691 ascorbate_peroxidase A 100.0 1.3E-58 2.7E-63 428.7 12.3 206 44-286 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.7E-56 3.6E-61 413.5 14.3 207 36-286 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 1.3E-55 2.8E-60 420.3 14.5 215 45-303 16-289 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 9E-54 1.9E-58 394.9 14.0 196 47-286 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 3.6E-50 7.8E-55 372.0 9.8 197 48-282 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 9.5E-49 2.1E-53 379.3 12.7 249 33-291 29-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 6E-44 1.3E-48 365.3 13.6 246 33-288 39-405 (716)
12 cd08201 plant_peroxidase_like_ 100.0 5.3E-44 1.1E-48 330.2 8.6 194 56-282 34-264 (264)
13 PRK15061 catalase/hydroperoxid 100.0 9.6E-43 2.1E-47 354.8 13.7 248 33-290 41-413 (726)
14 cd08200 catalase_peroxidase_2 100.0 8.1E-30 1.8E-34 238.7 9.6 190 52-284 18-296 (297)
15 TIGR00198 cat_per_HPI catalase 99.9 2.4E-25 5.2E-30 228.7 9.1 194 48-284 429-709 (716)
16 PRK15061 catalase/hydroperoxid 99.9 9.9E-25 2.2E-29 223.3 10.0 190 52-284 443-721 (726)
17 COG0376 KatG Catalase (peroxid 99.9 1E-21 2.2E-26 193.8 12.8 227 49-284 72-416 (730)
18 COG0376 KatG Catalase (peroxid 97.5 0.00066 1.4E-08 68.8 9.7 190 52-284 453-725 (730)
19 PF07172 GRP: Glycine rich pro 55.0 12 0.00025 30.1 2.7 21 1-22 1-21 (95)
20 PF11895 DUF3415: Domain of un 48.5 15 0.00033 28.6 2.3 29 269-301 3-31 (80)
21 KOG0400 40S ribosomal protein 37.9 23 0.0005 30.3 2.0 34 145-178 31-65 (151)
22 COG3763 Uncharacterized protei 29.7 1.6E+02 0.0034 22.5 5.0 28 48-75 24-51 (71)
23 KOG0427 Ubiquitin conjugating 25.8 41 0.0009 28.7 1.5 27 32-75 133-159 (161)
24 PF11619 P53_C: Transcription 24.6 49 0.0011 24.9 1.6 31 35-69 14-46 (71)
25 PF08782 c-SKI_SMAD_bind: c-SK 20.3 24 0.00053 28.4 -0.8 14 71-85 4-17 (96)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.1e-96 Score=697.81 Aligned_cols=266 Identities=36% Similarity=0.629 Sum_probs=249.9
Q ss_pred CCCCCCcccccccCchHHHHHHHHHHHHHHhCcCcccchhhhhhcccCCCCCCCccccccccCccccccccCCCCCcccc
Q 021841 29 EDPGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFR 108 (307)
Q Consensus 29 ~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~lLRL~FHDCfv~GCDaSiLL~~~~~~~~Ek~a~~N~~lrgf~ 108 (307)
..++|+++||++|||++|+||+++|++++++||+++|++||||||||||+||||||||+++ ..||++++|.+||||+
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l~Gf~ 97 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLLRGYD 97 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCcchHH
Confidence 3457999999999999999999999999999999999999999999999999999999965 3699999999999998
Q ss_pred ----------------------------ceeEecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHhcCCC
Q 021841 109 ----------------------------DGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 160 (307)
Q Consensus 109 ----------------------------daV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~ 160 (307)
|||+++|||.|+|++||||+++|.++++. +||+|+.++++|++.|++|||+
T Consensus 98 ~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~ 176 (324)
T PLN03030 98 VIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLN 176 (324)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCC
Confidence 89999999999999999999999887775 8999999999999999999999
Q ss_pred cccceeeccccccccccccccccccCC------CCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHH
Q 021841 161 APGLVALLGSHSVGRTHCVKLVHRLYP------EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 234 (307)
Q Consensus 161 ~~dlVaLsGaHTiG~ahc~~f~~Rly~------~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~ 234 (307)
.+|||+||||||||++||.+|.+|||| .+||+|||.|+.+|++.||...+..+. +++|+.||.+|||+||+
T Consensus 177 ~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~---~~lD~~Tp~~FDn~Yy~ 253 (324)
T PLN03030 177 TQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRR---IALDTGSSNRFDASFFS 253 (324)
T ss_pred HHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCcc---ccCCCCCCcccccHHHH
Confidence 999999999999999999999999996 369999999999999999953222223 58999999999999999
Q ss_pred HHhcccCCcccccccccCcCcHHHHHHHhhcH----HHHHHHHHHHHHHhhhCCCCCCCCCcccccccccc
Q 021841 235 NILDNKGLMMVDHQLATDKRTRPYVKKMAKSQ----DYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 301 (307)
Q Consensus 235 ~l~~~~glL~SD~~L~~d~~t~~~V~~~A~~~----~~F~~~Fa~Am~Km~~i~v~tG~~GeiR~~C~~~N 301 (307)
||+.++|+|+|||+|++|++|+++|++||.|+ +.|+++|++||+|||+|+||||++|||||+|+++|
T Consensus 254 nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 254 NLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 99999999999999999999999999999874 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.8e-89 Score=646.39 Aligned_cols=265 Identities=42% Similarity=0.714 Sum_probs=251.7
Q ss_pred CCCcccccccCchHHHHHHHHHHHHHHhCcCcccchhhhhhcccCCCCCCCccccccccCccccccccCCCCCcccc---
Q 021841 32 GLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFR--- 108 (307)
Q Consensus 32 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~lLRL~FHDCfv~GCDaSiLL~~~~~~~~Ek~a~~N~~lrgf~--- 108 (307)
||+++||++|||++|+||+++|++++++|++++|+||||+||||||+||||||||++++++.+|+++++|.+||||+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999887778999999999999987
Q ss_pred -------------------------ceeEecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHhcCCCccc
Q 021841 109 -------------------------DGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPG 163 (307)
Q Consensus 109 -------------------------daV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~d 163 (307)
|||+++|||.|+|++||+|+++|.+..+ ++||.|+.++++|++.|+++||+++|
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 7899999999999999999998877666 78999999999999999999999999
Q ss_pred ceeeccccccccccccccccccCC-----CCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHhc
Q 021841 164 LVALLGSHSVGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 238 (307)
Q Consensus 164 lVaLsGaHTiG~ahc~~f~~Rly~-----~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~ 238 (307)
||+|+||||||++||.+|.+|||+ ++||+||+.|+..|+..||...++.+. ++||+.||.+|||+||++|+.
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~---~~lD~~Tp~~FDn~Yy~~l~~ 236 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTL---VPLDPGTPNTFDNSYYKNLLA 236 (298)
T ss_pred heeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCcc---ccCCCCCCCccccHHHHHHHh
Confidence 999999999999999999999996 489999999999999999975433333 599999999999999999999
Q ss_pred ccCCcccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCCCCCCCccccccccc
Q 021841 239 NKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLA 300 (307)
Q Consensus 239 ~~glL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~i~v~tG~~GeiR~~C~~~ 300 (307)
++|+|+|||+|+.|++|+++|++||.||+.|+++|++||+||++|+|+||.+||||++|+++
T Consensus 237 ~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 237 GRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=5.7e-61 Score=449.78 Aligned_cols=208 Identities=28% Similarity=0.437 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHhCcCcccchhhhhhcccC-------CCCCCCccccccccCccccccccCCCCC-cccc--------
Q 021841 45 AEDIIREQVKLLYKRHKNTAFSWLRNIFHDCA-------VQSCDASLLLDSTRKTLSEKEMDRSFGM-RNFR-------- 108 (307)
Q Consensus 45 ~e~iVr~~v~~~~~~d~~~aa~lLRL~FHDCf-------v~GCDaSiLL~~~~~~~~Ek~a~~N~~l-rgf~-------- 108 (307)
++ -+++++++ +.+||.++|.+|||+||||| ++||||||++. .|+++++|.+| +||+
T Consensus 14 ~~-~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~ 85 (289)
T PLN02608 14 IE-KARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAK 85 (289)
T ss_pred HH-HHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHH
Confidence 44 45666744 67899999999999999999 99999999983 59999999999 5887
Q ss_pred ---------------ceeEecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHhcCCCcccceeecccccc
Q 021841 109 ---------------DGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 173 (307)
Q Consensus 109 ---------------daV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTi 173 (307)
|||+++|||.|+|++||+|++++. ++++||+|+.+++++++.|+++|||++|||+|+|||||
T Consensus 86 ~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTi 162 (289)
T PLN02608 86 HPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTL 162 (289)
T ss_pred cCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 789999999999999999999985 35689999999999999999999999999999999999
Q ss_pred cccccccccccc-CCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHhcc--cCC--cccccc
Q 021841 174 GRTHCVKLVHRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--KGL--MMVDHQ 248 (307)
Q Consensus 174 G~ahc~~f~~Rl-y~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~--~gl--L~SD~~ 248 (307)
|++||. |+ |+ ++| + .||.+|||+||++|+.+ +|+ |+|||+
T Consensus 163 G~ahc~----r~g~~-----------------------g~~-------~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~ 207 (289)
T PLN02608 163 GRAHPE----RSGFD-----------------------GPW-------T-KEPLKFDNSYFVELLKGESEGLLKLPTDKA 207 (289)
T ss_pred cccccc----CCCCC-----------------------CCC-------C-CCCCccChHHHHHHHcCCcCCccccccCHh
Confidence 999995 43 11 111 1 48999999999999999 798 799999
Q ss_pred cccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCCCCCCCccccccc
Q 021841 249 LATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 298 (307)
Q Consensus 249 L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~i~v~tG~~GeiR~~C~ 298 (307)
|+.|++|+.+|++||.||+.|+++|++||+||++|+|+||++||+.+.-+
T Consensus 208 L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 208 LLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred hhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999987654
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1e-61 Score=444.03 Aligned_cols=200 Identities=41% Similarity=0.691 Sum_probs=182.1
Q ss_pred HHHHHHHHHHhCcCcccchhhhhhcccCC-CCCCCccccccccCccccccccCCCCCc-ccc------------------
Q 021841 49 IREQVKLLYKRHKNTAFSWLRNIFHDCAV-QSCDASLLLDSTRKTLSEKEMDRSFGMR-NFR------------------ 108 (307)
Q Consensus 49 Vr~~v~~~~~~d~~~aa~lLRL~FHDCfv-~GCDaSiLL~~~~~~~~Ek~a~~N~~lr-gf~------------------ 108 (307)
||++|+++++++++++|+||||+|||||+ +|||||||+. ..|+++++|.+|+ +|+
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 89999999999999999999999999999 9999999982 5799999999997 876
Q ss_pred ----------ceeEecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHhcCCCcccceeeccccccccccc
Q 021841 109 ----------DGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 178 (307)
Q Consensus 109 ----------daV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~ahc 178 (307)
+||+++|||.|+|++||+|++++...++ .+||.|+.++++|++.|++||||++|||||+||||||++||
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 7899999999999999999999999877 78999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHhcccCCcccccccccCcCcHHH
Q 021841 179 VKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPY 258 (307)
Q Consensus 179 ~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~ 258 (307)
.+|. |||..+||+||+.|+.+ .|+. .++. . +++| ||.+|||+||++|+.++|+|+|||+|++|++|+++
T Consensus 155 ~~f~-rl~~~~dp~~d~~~~~~---~C~~-~~~~-~---~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~ 223 (230)
T PF00141_consen 155 SSFS-RLYFPPDPTMDPGYAGQ---NCNS-GGDN-G---VPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPI 223 (230)
T ss_dssp GCTG-GTSCSSGTTSTHHHHHH---SSST-SGCT-C---EESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHH
T ss_pred cccc-cccccccccccccccee---ccCC-Cccc-c---cccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHH
Confidence 9999 99988899999999988 9933 2222 3 5889 99999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 021841 259 VKKMAKS 265 (307)
Q Consensus 259 V~~~A~~ 265 (307)
|++||+|
T Consensus 224 V~~yA~d 230 (230)
T PF00141_consen 224 VERYAQD 230 (230)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9999976
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.3e-58 Score=428.70 Aligned_cols=206 Identities=28% Similarity=0.448 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHHHHHhCcCcccchhhhhhcccCCCCCCCccccccc---cCccccccccCCCCC-cccc-----------
Q 021841 44 QAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDST---RKTLSEKEMDRSFGM-RNFR----------- 108 (307)
Q Consensus 44 ~~e~iVr~~v~~~~~~d~~~aa~lLRL~FHDCfv~GCDaSiLL~~~---~~~~~Ek~a~~N~~l-rgf~----------- 108 (307)
..+.||+++|+++++ +++++|+||||+|||||+ ||+|+++++. ..+.+|+++++|.+| +||+
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~~~ 87 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKYPD 87 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHcCC
Confidence 567899999999999 999999999999999994 8888877543 223579999999999 8887
Q ss_pred ------------ceeEecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHhcCCCcccceeeccccccccc
Q 021841 109 ------------DGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRT 176 (307)
Q Consensus 109 ------------daV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a 176 (307)
|||+++|||.|+|++||||+.++...+++.+||.|+.++++|++.|+++||+++|||+|+||||||++
T Consensus 88 VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a 167 (253)
T cd00691 88 ISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRC 167 (253)
T ss_pred CCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceeecc
Confidence 78899999999999999999999887788899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHhcccC--------Ccccccc
Q 021841 177 HCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKG--------LMMVDHQ 248 (307)
Q Consensus 177 hc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~g--------lL~SD~~ 248 (307)
||..+. |+ +++ ..||.+|||+||++|+.++| +|+|||+
T Consensus 168 ~c~~~~---~~-----------------------g~~--------~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~ 213 (253)
T cd00691 168 HKERSG---YD-----------------------GPW--------TKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKA 213 (253)
T ss_pred cccCCC---CC-----------------------CCC--------CCCCCcccHHHHHHHhcCCCccCcCcceechhhHH
Confidence 995310 11 111 14899999999999999999 9999999
Q ss_pred cccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCC
Q 021841 249 LATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPL 286 (307)
Q Consensus 249 L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~i~v~ 286 (307)
|+.|++|+.+|+.||.|++.|+++|++||+||++|+|.
T Consensus 214 L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 214 LLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred HHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.7e-56 Score=413.46 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=183.4
Q ss_pred cccccc--CchHHHHHHHHHHHHHHhCcCcccchhhhhhc-----ccCCC--CCCCccccccccCccccccccCCCCC-c
Q 021841 36 NFYKDT--CPQAEDIIREQVKLLYKRHKNTAFSWLRNIFH-----DCAVQ--SCDASLLLDSTRKTLSEKEMDRSFGM-R 105 (307)
Q Consensus 36 ~fY~~s--CP~~e~iVr~~v~~~~~~d~~~aa~lLRL~FH-----DCfv~--GCDaSiLL~~~~~~~~Ek~a~~N~~l-r 105 (307)
+||... |+.+++.+++.+++.+ .+++++|.||||+|| |||++ ||||||.. .+|+++++|.+| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHH
Confidence 566643 8899999999999988 789999999999999 88887 99999944 469999999998 7
Q ss_pred ccc-----------------------ceeEecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHh-cCCCc
Q 021841 106 NFR-----------------------DGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAA-IGIDA 161 (307)
Q Consensus 106 gf~-----------------------daV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~-~Gl~~ 161 (307)
||+ |||.++|||.|+|++||||++++.. +++||.|+.++++|++.|++ +|||+
T Consensus 77 ~~~~i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~~Gl~~ 153 (250)
T PLN02364 77 ALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAKQMGLSD 153 (250)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHHhcCCCH
Confidence 887 7899999999999999999999864 56799999999999999997 59999
Q ss_pred ccceeeccccccccccccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHhcc--
Q 021841 162 PGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-- 239 (307)
Q Consensus 162 ~dlVaLsGaHTiG~ahc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~-- 239 (307)
+|||+|+||||||++|| +|+ + ..+++ + .||.+|||+||++|+.+
T Consensus 154 ~d~VaLsGaHTiG~~hc----~r~-~---------------------~~g~~-------~-~tp~~fDn~Yy~~ll~~~~ 199 (250)
T PLN02364 154 KDIVALSGAHTLGRCHK----DRS-G---------------------FEGAW-------T-SNPLIFDNSYFKELLSGEK 199 (250)
T ss_pred HHheeeecceeeccccC----CCC-C---------------------CCCCC-------C-CCCCccchHHHHHHhcCCc
Confidence 99999999999999999 333 1 00112 1 48999999999999999
Q ss_pred cCCcc--cccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCC
Q 021841 240 KGLMM--VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPL 286 (307)
Q Consensus 240 ~glL~--SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~i~v~ 286 (307)
+|+|. |||+|+.|++|+.+|+.||.|++.|+++|++||+||++|++-
T Consensus 200 ~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 200 EGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred CCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 89976 999999999999999999999999999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.3e-55 Score=420.25 Aligned_cols=215 Identities=26% Similarity=0.310 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHhC---cCcccchhhhhhcccCC------------CCCCCccccccccCccccccccCCCCCcccc-
Q 021841 45 AEDIIREQVKLLYKRH---KNTAFSWLRNIFHDCAV------------QSCDASLLLDSTRKTLSEKEMDRSFGMRNFR- 108 (307)
Q Consensus 45 ~e~iVr~~v~~~~~~d---~~~aa~lLRL~FHDCfv------------~GCDaSiLL~~~~~~~~Ek~a~~N~~lrgf~- 108 (307)
+|..|++.|++.+..+ ...|+.+|||+|||||+ +||||||||+.+ .|+++++|.+|+..-
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~~vvd 91 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLDEIVE 91 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHHHHHH
Confidence 4788999999999854 45678899999999996 899999999753 699999999885211
Q ss_pred ----------------------ceeE-ecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHhcCCCcccce
Q 021841 109 ----------------------DGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLV 165 (307)
Q Consensus 109 ----------------------daV~-~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlV 165 (307)
|||+ +.|||.|+|++||+|++++. ++++||.|+.++++|++.|++||||.+|||
T Consensus 92 ~lk~~~e~~cVScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~V 168 (328)
T cd00692 92 ALRPFHQKHNVSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAGFSPDELV 168 (328)
T ss_pred HHHHHHHhcCcCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 7888 56999999999999999886 356799999999999999999999999999
Q ss_pred eeccccccccccccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHh-cccC---
Q 021841 166 ALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL-DNKG--- 241 (307)
Q Consensus 166 aLsGaHTiG~ahc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~-~~~g--- 241 (307)
+|+||||||++|. +||+++. +++|. ||.+|||+||+|++ .+++
T Consensus 169 aLsGAHTiG~a~~----------~Dps~~g----------------------~p~D~-TP~~FDn~Yf~~ll~~~~~~~g 215 (328)
T cd00692 169 ALLAAHSVAAQDF----------VDPSIAG----------------------TPFDS-TPGVFDTQFFIETLLKGTAFPG 215 (328)
T ss_pred hhcccccccccCC----------CCCCCCC----------------------CCCCC-CcchhcHHHHHHHHHcCCCCCC
Confidence 9999999999992 3666651 26774 99999999999987 5665
Q ss_pred ----------------CcccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCCCCCCCccccccccccCC
Q 021841 242 ----------------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKL 303 (307)
Q Consensus 242 ----------------lL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~i~v~tG~~GeiR~~C~~~N~~ 303 (307)
+|+||++|+.|++|+.+|++||+||+.|+++|++||+||++|||.. ..+.+|+.|+..
T Consensus 216 ~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~~----~~l~dcs~v~p~ 289 (328)
T cd00692 216 SGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQDN----ISLTDCSDVIPP 289 (328)
T ss_pred ccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCc----chhccCcccCCC
Confidence 4999999999999999999999999999999999999999999863 388899999953
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=9e-54 Score=394.93 Aligned_cols=196 Identities=28% Similarity=0.432 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHhCcCcccchhhhhhcccCC-------CCCCCccccccccCccccccccCCCCCc-ccc----------
Q 021841 47 DIIREQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDASLLLDSTRKTLSEKEMDRSFGMR-NFR---------- 108 (307)
Q Consensus 47 ~iVr~~v~~~~~~d~~~aa~lLRL~FHDCfv-------~GCDaSiLL~~~~~~~~Ek~a~~N~~lr-gf~---------- 108 (307)
+-++..+.+.+ .+...+|.+|||.||||.+ +||||||.+ ..|+++++|.+|+ +++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf------~~E~~~~~N~gL~~~~~~i~~iK~~~~ 90 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRH------PQELAHDANNGLDIAVRLLDPIKELFP 90 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecC------hhhccCCCcCChHHHHHHHHHHHHHcC
Confidence 34566777776 4568899999999999964 899999986 3599999999997 765
Q ss_pred -------------ceeEecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHhcCCCcccceeecccccccc
Q 021841 109 -------------DGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGR 175 (307)
Q Consensus 109 -------------daV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~ 175 (307)
+||+++|||.|+|++||+|+.++. ++++||.|+.++++|++.|++||||++|||||+||||||+
T Consensus 91 ~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ 167 (251)
T PLN02879 91 ILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGR 167 (251)
T ss_pred CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccc
Confidence 789999999999999999999875 4578999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHhcc--cCC--ccccccccc
Q 021841 176 THCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--KGL--MMVDHQLAT 251 (307)
Q Consensus 176 ahc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~--~gl--L~SD~~L~~ 251 (307)
+||. |. + .++.| | .||.+|||+||++|+.+ +|+ |+|||+|+.
T Consensus 168 ah~~----r~-g---------------------~~g~~-------d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~ 213 (251)
T PLN02879 168 CHKE----RS-G---------------------FEGAW-------T-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLD 213 (251)
T ss_pred cccc----cc-c---------------------CCCCC-------C-CCccceeHHHHHHHHcCCcCCCccchhhHHHhc
Confidence 9995 21 1 01112 3 48999999999999999 898 679999999
Q ss_pred CcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCC
Q 021841 252 DKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPL 286 (307)
Q Consensus 252 d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~i~v~ 286 (307)
|++|+++|++||.||+.|+++|++||+||++|++.
T Consensus 214 D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 214 DPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred CCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3.6e-50 Score=372.03 Aligned_cols=197 Identities=30% Similarity=0.488 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhCcCcccchhhhhhcccCCC--------CCCCccccccccCccccccccCCCCC-cccc----------
Q 021841 48 IIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ--------SCDASLLLDSTRKTLSEKEMDRSFGM-RNFR---------- 108 (307)
Q Consensus 48 iVr~~v~~~~~~d~~~aa~lLRL~FHDCfv~--------GCDaSiLL~~~~~~~~Ek~a~~N~~l-rgf~---------- 108 (307)
.|+..|++.+.+++.+++++|||+|||||+. ||||||+++. |+++++|.+| ++++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcC
Confidence 4889999999999999999999999999996 9999999963 9999999985 6654
Q ss_pred ----------------ceeEec--CCCccccCCCCCCCCCCc--hhhhccCCCCCCccHHHHHHHHHhcCCCcccceeec
Q 021841 109 ----------------DGVVAL--GGPYIPLKTGRRDGRKSR--AEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL 168 (307)
Q Consensus 109 ----------------daV~~~--GGP~~~v~~GRrD~~~s~--~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs 168 (307)
+||+.+ |||.|+|++||+|+.++. ...+...+|.|+.+++++++.|+++||+++|||||+
T Consensus 76 ~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~ 155 (255)
T cd00314 76 GGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALS 155 (255)
T ss_pred CCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhc
Confidence 677788 999999999999999774 344566788888899999999999999999999999
Q ss_pred -ccccc-ccccccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHhccc------
Q 021841 169 -GSHSV-GRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK------ 240 (307)
Q Consensus 169 -GaHTi-G~ahc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~------ 240 (307)
||||| |++||..|..|+ | .+|..||.+|||+||++|+.++
T Consensus 156 ~GaHti~G~~~~~~~~~~~-------------------~-------------~~~~~tp~~fDN~yy~~l~~~~~~~~~~ 203 (255)
T cd00314 156 AGAHTLGGKNHGDLLNYEG-------------------S-------------GLWTSTPFTFDNAYFKNLLDMNWEWRVG 203 (255)
T ss_pred cCCeeccCcccCCCCCccc-------------------C-------------CCCCCCCCccchHHHHHHhcCCcccccC
Confidence 99999 999999887664 2 2234699999999999999998
Q ss_pred ----------CCcccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhh
Q 021841 241 ----------GLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 282 (307)
Q Consensus 241 ----------glL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~ 282 (307)
++|+||++|+.|++|+.+|++||.|++.|+++|++||+||++
T Consensus 204 ~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 204 SPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999974
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=9.5e-49 Score=379.27 Aligned_cols=249 Identities=18% Similarity=0.256 Sum_probs=206.8
Q ss_pred CCccc-ccccCchH-HHHHHHHHHHHHHhC--------cCcccchhhhhhcccCC-------CCCC-CccccccccCccc
Q 021841 33 LVMNF-YKDTCPQA-EDIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSCD-ASLLLDSTRKTLS 94 (307)
Q Consensus 33 L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~d--------~~~aa~lLRL~FHDCfv-------~GCD-aSiLL~~~~~~~~ 94 (307)
+-.+| |.+.+-.+ .+.|++.|++.+... ...+|-+|||+|||+.+ +|++ |+|.+ .+
T Consensus 29 ~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf------~p 102 (409)
T cd00649 29 MGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRF------AP 102 (409)
T ss_pred CCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCcccc------cc
Confidence 43333 44444333 367899999999864 37899999999999985 7996 88876 46
Q ss_pred cccccCCCCCc-----------ccc--------------ceeEecCCCccccCCCCCCCCCCchh---------------
Q 021841 95 EKEMDRSFGMR-----------NFR--------------DGVVALGGPYIPLKTGRRDGRKSRAE--------------- 134 (307)
Q Consensus 95 Ek~a~~N~~lr-----------gf~--------------daV~~~GGP~~~v~~GRrD~~~s~~~--------------- 134 (307)
|+..+.|.+|. .|. .||+.+|||.|++..||.|...+...
T Consensus 103 e~~~~~N~gL~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~ 182 (409)
T cd00649 103 LNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRY 182 (409)
T ss_pred ccCcHhhhhHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhccccccc
Confidence 99999999871 121 67888999999999999999754310
Q ss_pred --------------------hhcc--CCCCCCccHHHHHHHHHhcCCCcccceee-ccccccccccccccccccCCCCCC
Q 021841 135 --------------------ILEQ--YLPDHNDSMSVVLERFAAIGIDAPGLVAL-LGSHSVGRTHCVKLVHRLYPEVDP 191 (307)
Q Consensus 135 --------------------~a~~--~LP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHTiG~ahc~~f~~Rly~~~dp 191 (307)
.+++ .||.|..++.+|++.|++||||.+||||| +||||||++||..|.+|| ++||
T Consensus 183 ~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl--g~dP 260 (409)
T cd00649 183 SGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV--GPEP 260 (409)
T ss_pred ccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC--CCCC
Confidence 0122 69999999999999999999999999999 599999999999999999 4799
Q ss_pred CCCcchHhHhh--hcCCCCCCCCCcccccccC---CCCCcccchHHHHHHhc----------------------------
Q 021841 192 ALNPDHVPHML--HKCPDAIPDPKAVQYVRND---RGTPMVLDNNYYRNILD---------------------------- 238 (307)
Q Consensus 192 ~~d~~~~~~L~--~~Cp~~~~~~~~~~~~~lD---~~tp~~FDN~Yy~~l~~---------------------------- 238 (307)
.+++.|++.|+ ..||.+.+..+.. ..+| ..||.+|||+||++|+.
T Consensus 261 ~~~~~~~~gLgw~~~Cp~g~g~~t~~--sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d 338 (409)
T cd00649 261 EAAPIEQQGLGWKNSYGTGKGKDTIT--SGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPD 338 (409)
T ss_pred CcCHHHHHhhcccccCCCCCCCCCcc--ccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCC
Confidence 99999999995 8999754332222 3688 47999999999999998
Q ss_pred --------ccCCcccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHh--hhCCCCCCCCC
Q 021841 239 --------NKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL--SENNPLTGTKG 291 (307)
Q Consensus 239 --------~~glL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km--~~i~v~tG~~G 291 (307)
+++||+||++|+.|++|+++|++||.|++.||++|++||+|| +.+||++-..|
T Consensus 339 ~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 339 AHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred ccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 569999999999999999999999999999999999999999 69999886554
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=6e-44 Score=365.27 Aligned_cols=246 Identities=17% Similarity=0.240 Sum_probs=202.0
Q ss_pred CCccc-ccccCchH-HHHHHHHHHHHHHhC--------cCcccchhhhhhcccCC-------CCC-CCccccccccCccc
Q 021841 33 LVMNF-YKDTCPQA-EDIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSC-DASLLLDSTRKTLS 94 (307)
Q Consensus 33 L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~d--------~~~aa~lLRL~FHDCfv-------~GC-DaSiLL~~~~~~~~ 94 (307)
+-.+| |.+-+-.. ...|++.|++.+... ...+|-+|||+||++.+ +|| .|+|.+ .+
T Consensus 39 ~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf------~P 112 (716)
T TIGR00198 39 MGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF------AP 112 (716)
T ss_pred CCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec------cc
Confidence 44443 45544433 346899999999874 36899999999999986 788 488866 46
Q ss_pred cccccCCCCC-cc---cc---------------------ceeEecCCCccccCCCCCCCCCCc---------------h-
Q 021841 95 EKEMDRSFGM-RN---FR---------------------DGVVALGGPYIPLKTGRRDGRKSR---------------A- 133 (307)
Q Consensus 95 Ek~a~~N~~l-rg---f~---------------------daV~~~GGP~~~v~~GRrD~~~s~---------------~- 133 (307)
|++++.|.+| +. ++ +||+.+|||.|+|.+||+|+..+. .
T Consensus 113 ~~sw~~N~~Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~ 192 (716)
T TIGR00198 113 LNSWPDNVNLDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSRE 192 (716)
T ss_pred ccCchhhhhHHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcccc
Confidence 9999999887 11 11 789999999999999999994321 0
Q ss_pred ----------h----------hhccCCCCCCccHHHHHHHHHhcCCCcccceeec-cccccccccccccccccCCCCCCC
Q 021841 134 ----------E----------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHCVKLVHRLYPEVDPA 192 (307)
Q Consensus 134 ----------~----------~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~ahc~~f~~Rly~~~dp~ 192 (307)
. +....+|.|..++++|++.|++||||.+|||||+ ||||||++||.+|.+|| ++||+
T Consensus 193 ~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl--g~dP~ 270 (716)
T TIGR00198 193 DRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI--GPDPE 270 (716)
T ss_pred ccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC--CCCCC
Confidence 0 1122699999999999999999999999999995 99999999999999998 58999
Q ss_pred CCcchHhHhhhcCCCCCC--CCCcccccccC---CCCCcccchHHHHHHhcc----------------------------
Q 021841 193 LNPDHVPHMLHKCPDAIP--DPKAVQYVRND---RGTPMVLDNNYYRNILDN---------------------------- 239 (307)
Q Consensus 193 ~d~~~~~~L~~~Cp~~~~--~~~~~~~~~lD---~~tp~~FDN~Yy~~l~~~---------------------------- 239 (307)
+++.|++.|+..||.+.+ ..+.. ..+| ..||.+|||+||+||+..
T Consensus 271 ~~~~~~~gLg~~c~~~~g~g~dt~~--sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~ 348 (716)
T TIGR00198 271 GAPIEEQGLGWHNQYGKGVGRDTMT--SGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVED 348 (716)
T ss_pred cCHHHHHHhcccCCCCCCCCCCccc--ccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccc
Confidence 999999999999985322 22211 3677 469999999999999974
Q ss_pred ------cCCcccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhh--hCCCCCC
Q 021841 240 ------KGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS--ENNPLTG 288 (307)
Q Consensus 240 ------~glL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~--~i~v~tG 288 (307)
+++|+||++|..|++|+++|+.||.|++.|+++|++||+||+ .+|++.-
T Consensus 349 ~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 349 PNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred cccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 689999999999999999999999999999999999999999 5666543
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=5.3e-44 Score=330.24 Aligned_cols=194 Identities=22% Similarity=0.364 Sum_probs=161.3
Q ss_pred HHHhCcCcccchhhhhhcccC-------CCCCCCccccccccCcccccc-ccCCCCCcccc------------------c
Q 021841 56 LYKRHKNTAFSWLRNIFHDCA-------VQSCDASLLLDSTRKTLSEKE-MDRSFGMRNFR------------------D 109 (307)
Q Consensus 56 ~~~~d~~~aa~lLRL~FHDCf-------v~GCDaSiLL~~~~~~~~Ek~-a~~N~~lrgf~------------------d 109 (307)
+...+++++|+||||+||||| ++||||||+|+.+ .+|+. ...|.+|++|+ +
T Consensus 34 ~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~~VScADiialAa~~ 110 (264)
T cd08201 34 APGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSPRSSMADLIAMGVVT 110 (264)
T ss_pred CcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccCccCHHHHHHHHHHH
Confidence 344788999999999999999 8999999999743 46887 56677888887 7
Q ss_pred eeEecCCCccccCCCCCCCCCCchhhhccCCCCCCccHHHHHHHHHhcCCCcccceeecc-ccccccccccccccccCCC
Q 021841 110 GVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLG-SHSVGRTHCVKLVHRLYPE 188 (307)
Q Consensus 110 aV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-aHTiG~ahc~~f~~Rly~~ 188 (307)
||+.+|||.|+|++||+|++++.. . .||.|+.++++|++.|++|||+++|||+||| |||||++||..|.++.-
T Consensus 111 AV~~~GGP~i~v~~GR~Da~~s~~---~-glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~-- 184 (264)
T cd08201 111 SVASCGGPVVPFRAGRIDATEAGQ---A-GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVP-- 184 (264)
T ss_pred HHHHcCCCeecccccCCCcccccc---c-cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcC--
Confidence 899999999999999999998864 2 4999999999999999999999999999995 99999999999976641
Q ss_pred CCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHHHhcccC----------CcccccccccCcCcHHH
Q 021841 189 VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKG----------LMMVDHQLATDKRTRPY 258 (307)
Q Consensus 189 ~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~g----------lL~SD~~L~~d~~t~~~ 258 (307)
|.. ..+.. .++|+ ||.+|||+||.+++.+.. -+.||..++.....+ .
T Consensus 185 --~g~---------------~~~~~----~p~ds-tp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t 241 (264)
T cd08201 185 --PGS---------------VPDTV----LQFFD-TTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-T 241 (264)
T ss_pred --Ccc---------------ccCCC----CCCCC-CccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-H
Confidence 100 00011 26775 999999999999998752 467999999865544 5
Q ss_pred HHHHhhcHHHHHHHHHHHHHHhhh
Q 021841 259 VKKMAKSQDYFFKEFSRAITLLSE 282 (307)
Q Consensus 259 V~~~A~~~~~F~~~Fa~Am~Km~~ 282 (307)
++..| +++.|.+.++..+.||.+
T Consensus 242 ~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 242 MNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHHhc-ChHHHHHHHHHHHHHHhC
Confidence 67787 799999999999999974
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9.6e-43 Score=354.81 Aligned_cols=248 Identities=16% Similarity=0.243 Sum_probs=202.4
Q ss_pred CCccc-ccccCchH-HHHHHHHHHHHHHhC--------cCcccchhhhhhcccCC-------CCCC-CccccccccCccc
Q 021841 33 LVMNF-YKDTCPQA-EDIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSCD-ASLLLDSTRKTLS 94 (307)
Q Consensus 33 L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~d--------~~~aa~lLRL~FHDCfv-------~GCD-aSiLL~~~~~~~~ 94 (307)
+-.+| |.+-+-.. ...|++.|++.+... ...+|-+|||+||++.+ +||+ |+|.+ .+
T Consensus 41 ~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~p 114 (726)
T PRK15061 41 MGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------AP 114 (726)
T ss_pred CCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cc
Confidence 44343 45544333 356999999998864 36899999999999986 7996 78876 46
Q ss_pred cccccCCCCCc---c--------cc--------------ceeEecCCCccccCCCCCCCCCCchh---------------
Q 021841 95 EKEMDRSFGMR---N--------FR--------------DGVVALGGPYIPLKTGRRDGRKSRAE--------------- 134 (307)
Q Consensus 95 Ek~a~~N~~lr---g--------f~--------------daV~~~GGP~~~v~~GRrD~~~s~~~--------------- 134 (307)
|+..+.|.+|. . |. .||+.+|||.+++..||.|...+...
T Consensus 115 e~~w~~N~gL~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r 194 (726)
T PRK15061 115 LNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDER 194 (726)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccc
Confidence 99999999871 1 11 67888999999999999998654320
Q ss_pred -----------------------hhccCCCCCCccHHHHHHHHHhcCCCcccceeec-cccccccccccccccccCCCCC
Q 021841 135 -----------------------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHCVKLVHRLYPEVD 190 (307)
Q Consensus 135 -----------------------~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~ahc~~f~~Rly~~~d 190 (307)
+-...+|.|..++.+|++.|++||||.+|||||+ ||||||++||..|.+|+ ++|
T Consensus 195 ~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl--gpd 272 (726)
T PRK15061 195 YSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV--GPE 272 (726)
T ss_pred cccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc--CCC
Confidence 0012389999999999999999999999999995 99999999999999998 589
Q ss_pred CCCCcchHhHhh--hcCCCCCCCCCcccccccC---CCCCcccchHHHHHHhcc--------------------------
Q 021841 191 PALNPDHVPHML--HKCPDAIPDPKAVQYVRND---RGTPMVLDNNYYRNILDN-------------------------- 239 (307)
Q Consensus 191 p~~d~~~~~~L~--~~Cp~~~~~~~~~~~~~lD---~~tp~~FDN~Yy~~l~~~-------------------------- 239 (307)
|.+++.+++.|. ..||.+.+..+.+ ..+| ..||.+|||+||++|+.+
T Consensus 273 P~~a~~~~qgLgw~~~c~~g~g~dt~t--sGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~p 350 (726)
T PRK15061 273 PEAAPIEEQGLGWKNSYGSGKGADTIT--SGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVP 350 (726)
T ss_pred CCcCHHHHHhccccccCCCCCCCCCcc--ccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCC
Confidence 999999999875 8999754332222 3678 579999999999999985
Q ss_pred ----------cCCcccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHh--hhCCCCCCCC
Q 021841 240 ----------KGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL--SENNPLTGTK 290 (307)
Q Consensus 240 ----------~glL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km--~~i~v~tG~~ 290 (307)
++||+||++|..||.++++|++||.|+++|+++|++||+|| ..+|+++-.-
T Consensus 351 d~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~ 413 (726)
T PRK15061 351 DAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYL 413 (726)
T ss_pred cccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhc
Confidence 68999999999999999999999999999999999999999 4577665433
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.96 E-value=8.1e-30 Score=238.73 Aligned_cols=190 Identities=18% Similarity=0.293 Sum_probs=150.3
Q ss_pred HHHHHHHhCcCcccchhhhhhcccCC-------CCCCCc-cccccccCccccccccCCCC--C-----------ccc---
Q 021841 52 QVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRSFG--M-----------RNF--- 107 (307)
Q Consensus 52 ~v~~~~~~d~~~aa~lLRL~FHDCfv-------~GCDaS-iLL~~~~~~~~Ek~a~~N~~--l-----------rgf--- 107 (307)
.+++.+....-.++.||||+||++.+ +||+|+ |-| .+|++++.|.+ | +.|
T Consensus 18 ~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~ 91 (297)
T cd08200 18 ALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNES 91 (297)
T ss_pred HHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhccc
Confidence 47777777777899999999999986 899999 655 46899999987 5 112
Q ss_pred -----c------------ceeEecCC-----CccccCCCCCCCCCCchhhhc---cCCCCCC------------ccHHHH
Q 021841 108 -----R------------DGVVALGG-----PYIPLKTGRRDGRKSRAEILE---QYLPDHN------------DSMSVV 150 (307)
Q Consensus 108 -----~------------daV~~~GG-----P~~~v~~GRrD~~~s~~~~a~---~~LP~p~------------~~~~~l 150 (307)
. .||+.+|| |.+++..||.|...+.. +++ ..+|.+. ...+.|
T Consensus 92 ~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~t-d~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 92 QSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQT-DVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred ccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCC-CcccccccCCCCcccccccccCCCCCHHHHH
Confidence 1 56777899 99999999999987532 111 1345332 234679
Q ss_pred HHHHHhcCCCcccceeecccc-ccccccccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccc
Q 021841 151 LERFAAIGIDAPGLVALLGSH-SVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229 (307)
Q Consensus 151 ~~~F~~~Gl~~~dlVaLsGaH-TiG~ahc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FD 229 (307)
++.|.++|||++|||||+||| ++|+.|..++ .+.|+ .+|.+||
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~----------------------------~G~wT--------~~p~~f~ 214 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK----------------------------HGVFT--------DRPGVLT 214 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC----------------------------CCCCc--------CCCCccc
Confidence 999999999999999999997 6998875321 13455 3899999
Q ss_pred hHHHHHHhcc--------------------cC-----CcccccccccCcCcHHHHHHHhhc--HHHHHHHHHHHHHHhhh
Q 021841 230 NNYYRNILDN--------------------KG-----LMMVDHQLATDKRTRPYVKKMAKS--QDYFFKEFSRAITLLSE 282 (307)
Q Consensus 230 N~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~Km~~ 282 (307)
|.||+||+.- .| .+.+|.+|.+|+..+++|+.||.| ++.||++|++||.||.+
T Consensus 215 N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klme 294 (297)
T cd08200 215 NDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMN 294 (297)
T ss_pred cHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 9999999941 01 267899999999999999999998 99999999999999998
Q ss_pred CC
Q 021841 283 NN 284 (307)
Q Consensus 283 i~ 284 (307)
+.
T Consensus 295 ld 296 (297)
T cd08200 295 LD 296 (297)
T ss_pred cC
Confidence 63
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.92 E-value=2.4e-25 Score=228.75 Aligned_cols=194 Identities=19% Similarity=0.278 Sum_probs=147.9
Q ss_pred HHHHHHHHH---HHhCcCcccchhhhhhcccCC-------CCCCCc-cccccccCccccccccCC--CCC----------
Q 021841 48 IIREQVKLL---YKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRS--FGM---------- 104 (307)
Q Consensus 48 iVr~~v~~~---~~~d~~~aa~lLRL~FHDCfv-------~GCDaS-iLL~~~~~~~~Ek~a~~N--~~l---------- 104 (307)
+|++.|.+. +....-..+.|||++||++.+ +|++|+ |.| .+|++++.| .+|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl------~pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRL------EPQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeec------chhcCcccCCHHHHHHHHHHHHHH
Confidence 346666553 444556688999999999986 899999 766 469999999 555
Q ss_pred -cccc---------------ceeEec---CCC--ccccCCCCCCCCCCchhhhccCCC---CC------------CccHH
Q 021841 105 -RNFR---------------DGVVAL---GGP--YIPLKTGRRDGRKSRAEILEQYLP---DH------------NDSMS 148 (307)
Q Consensus 105 -rgf~---------------daV~~~---GGP--~~~v~~GRrD~~~s~~~~a~~~LP---~p------------~~~~~ 148 (307)
+.|. .||+.+ ||| .+++..||.|...... +++...| .+ .....
T Consensus 503 k~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~ 581 (716)
T TIGR00198 503 QAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEE 581 (716)
T ss_pred HHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHH
Confidence 1221 467777 897 5788999999986532 2222222 11 12346
Q ss_pred HHHHHHHhcCCCcccceeeccc-cccccccccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcc
Q 021841 149 VVLERFAAIGIDAPGLVALLGS-HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMV 227 (307)
Q Consensus 149 ~l~~~F~~~Gl~~~dlVaLsGa-HTiG~ahc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~ 227 (307)
.|++.|..+|||++|||||+|| |++|+.|..++ .+.++ .+|.+
T Consensus 582 ~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~----------------------------~G~~T--------~~p~~ 625 (716)
T TIGR00198 582 LLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK----------------------------HGVFT--------DRVGV 625 (716)
T ss_pred HHHHHHHhCCCChHHHHheecchhhccccCCCCC----------------------------CCCCc--------CCCCc
Confidence 6889999999999999999999 59999996431 12454 38999
Q ss_pred cchHHHHHHhccc--------------------C---Cc--ccccccccCcCcHHHHHHHhhcH--HHHHHHHHHHHHHh
Q 021841 228 LDNNYYRNILDNK--------------------G---LM--MVDHQLATDKRTRPYVKKMAKSQ--DYFFKEFSRAITLL 280 (307)
Q Consensus 228 FDN~Yy~~l~~~~--------------------g---lL--~SD~~L~~d~~t~~~V~~~A~~~--~~F~~~Fa~Am~Km 280 (307)
|||.||+||+.-. | ++ .+|.+|.+|+..+++|+.||+|+ +.||++|++||.|+
T Consensus 626 f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Kl 705 (716)
T TIGR00198 626 LSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKV 705 (716)
T ss_pred cccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 9999999998610 1 22 67999999999999999999997 89999999999999
Q ss_pred hhCC
Q 021841 281 SENN 284 (307)
Q Consensus 281 ~~i~ 284 (307)
.+++
T Consensus 706 m~ld 709 (716)
T TIGR00198 706 MNLD 709 (716)
T ss_pred HhCC
Confidence 9986
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.91 E-value=9.9e-25 Score=223.28 Aligned_cols=190 Identities=17% Similarity=0.306 Sum_probs=149.2
Q ss_pred HHHHHHHhCcCcccchhhhhhcccCC-------CCCCCc-cccccccCccccccccCCC--CC-----------cccc--
Q 021841 52 QVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRSF--GM-----------RNFR-- 108 (307)
Q Consensus 52 ~v~~~~~~d~~~aa~lLRL~FHDCfv-------~GCDaS-iLL~~~~~~~~Ek~a~~N~--~l-----------rgf~-- 108 (307)
.+++.+....-..+.|||++||++.+ +|++|+ |.| .+|++++.|. +| ..|.
T Consensus 443 ~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl------~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~ 516 (726)
T PRK15061 443 ALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNEPAQLAKVLAVLEGIQAEFNAA 516 (726)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceec------ccccCccccCHHHHHHHHHHHHHHHHHHhhc
Confidence 46677777777799999999999985 899999 776 4689999997 55 1231
Q ss_pred ------------------ceeEec---CC--CccccCCCCCCCCCCchhhhcc---CCCCCC------------ccHHHH
Q 021841 109 ------------------DGVVAL---GG--PYIPLKTGRRDGRKSRAEILEQ---YLPDHN------------DSMSVV 150 (307)
Q Consensus 109 ------------------daV~~~---GG--P~~~v~~GRrD~~~s~~~~a~~---~LP~p~------------~~~~~l 150 (307)
.||+.+ || |.+++..||.|..... ++++. .+|... .....|
T Consensus 517 ~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~-td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 517 QSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQ-TDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred cCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCC-CCcccccccCCCCccccccccccCCCCHHHHH
Confidence 456666 57 9999999999998643 23322 456543 123779
Q ss_pred HHHHHhcCCCcccceeecccc-ccccccccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccc
Q 021841 151 LERFAAIGIDAPGLVALLGSH-SVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLD 229 (307)
Q Consensus 151 ~~~F~~~Gl~~~dlVaLsGaH-TiG~ahc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FD 229 (307)
++.|..+|||++|||||+||| ++|..|-.++ .+.++ .+|.+||
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~----------------------------~G~~T--------~~p~~fs 639 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK----------------------------HGVFT--------DRPGVLT 639 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC----------------------------CCCCc--------CCCCccc
Confidence 999999999999999999997 7888874321 12454 3799999
Q ss_pred hHHHHHHhcc----------c----------C---C--cccccccccCcCcHHHHHHHhhc--HHHHHHHHHHHHHHhhh
Q 021841 230 NNYYRNILDN----------K----------G---L--MMVDHQLATDKRTRPYVKKMAKS--QDYFFKEFSRAITLLSE 282 (307)
Q Consensus 230 N~Yy~~l~~~----------~----------g---l--L~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~Km~~ 282 (307)
|.||+||+.- . | + +.+|..|.+|+..|++|+.||.| ++.||++|++||.|+.+
T Consensus 640 NdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvme 719 (726)
T PRK15061 640 NDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMN 719 (726)
T ss_pred cHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 9999999941 1 1 1 46799999999999999999998 99999999999999999
Q ss_pred CC
Q 021841 283 NN 284 (307)
Q Consensus 283 i~ 284 (307)
++
T Consensus 720 ld 721 (726)
T PRK15061 720 LD 721 (726)
T ss_pred CC
Confidence 86
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1e-21 Score=193.81 Aligned_cols=227 Identities=16% Similarity=0.244 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhCc--------CcccchhhhhhcccCC-------CCCCCccccccccCccccccccCCCCC-cccc----
Q 021841 49 IREQVKLLYKRHK--------NTAFSWLRNIFHDCAV-------QSCDASLLLDSTRKTLSEKEMDRSFGM-RNFR---- 108 (307)
Q Consensus 49 Vr~~v~~~~~~d~--------~~aa~lLRL~FHDCfv-------~GCDaSiLL~~~~~~~~Ek~a~~N~~l-rgf~---- 108 (307)
|++.++..+.... ..+|-+|||+||-..+ +|..+ +..++.++...|.|.+| +++.
T Consensus 72 vk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~-----G~qRFaPlnSWPDN~nLDKarRLLWP 146 (730)
T COG0376 72 VKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGG-----GQQRFAPLNSWPDNANLDKARRLLWP 146 (730)
T ss_pred HHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCC-----CceecccccCCCcccchHHHHHHhhh
Confidence 4455666655532 4789999999999975 33332 22345678889999988 2322
Q ss_pred --------------------ceeEecCCCccccCCCCCCCCCCchh----------------------------------
Q 021841 109 --------------------DGVVALGGPYIPLKTGRRDGRKSRAE---------------------------------- 134 (307)
Q Consensus 109 --------------------daV~~~GGP~~~v~~GRrD~~~s~~~---------------------------------- 134 (307)
.|++..|++.+.+..||.|-..+...
T Consensus 147 IKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIY 226 (730)
T COG0376 147 IKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIY 226 (730)
T ss_pred HhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEE
Confidence 57778899999999999998776540
Q ss_pred ---hhccCCCCCCccHHHHHHHHHhcCCCcccceeec-cccccccccccccccccCCCCCCCCCcchHh--HhhhcCCCC
Q 021841 135 ---ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHCVKLVHRLYPEVDPALNPDHVP--HMLHKCPDA 208 (307)
Q Consensus 135 ---~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~ahc~~f~~Rly~~~dp~~d~~~~~--~L~~~Cp~~ 208 (307)
+-++..|.|-.+..+++..|++|++|.+|.|||. ||||+|++|...-.+-+ +++|.--+--.+ -+...|..+
T Consensus 227 VNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v--g~ePe~a~ie~qGlGW~~~~g~G 304 (730)
T COG0376 227 VNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV--GPEPEAAPIEQQGLGWANTYGSG 304 (730)
T ss_pred eCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc--CCCccccchhhhccccccccCCC
Confidence 1234589999999999999999999999999998 69999999976532222 456654443333 334455543
Q ss_pred CCCCCcccccccC---CCCCcccchHHHHHHhcc-----------------------------------cCCcccccccc
Q 021841 209 IPDPKAVQYVRND---RGTPMVLDNNYYRNILDN-----------------------------------KGLMMVDHQLA 250 (307)
Q Consensus 209 ~~~~~~~~~~~lD---~~tp~~FDN~Yy~~l~~~-----------------------------------~glL~SD~~L~ 250 (307)
.+..+.+ ..+. ..||++|||+||.+|+.. -.||++|.+|-
T Consensus 305 ~G~dtit--sGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr 382 (730)
T COG0376 305 KGPDTIT--SGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALR 382 (730)
T ss_pred cCccccc--ccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhh
Confidence 3321111 0121 148999999999999853 13799999999
Q ss_pred cCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCC
Q 021841 251 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENN 284 (307)
Q Consensus 251 ~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~i~ 284 (307)
.||..+++.++|..|++.|.+.|++||.||..-.
T Consensus 383 ~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 383 FDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred cChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00066 Score=68.81 Aligned_cols=190 Identities=21% Similarity=0.320 Sum_probs=114.8
Q ss_pred HHHHHHHhCcCcccchhhhhhcccCC-------CCCCCcc-ccccccCccccccccCCCC--C----cc-------cc--
Q 021841 52 QVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDASL-LLDSTRKTLSEKEMDRSFG--M----RN-------FR-- 108 (307)
Q Consensus 52 ~v~~~~~~d~~~aa~lLRL~FHDCfv-------~GCDaSi-LL~~~~~~~~Ek~a~~N~~--l----rg-------f~-- 108 (307)
.++..+....-....|+-.+|--+-+ +|.+|.- -| .+.|++.-|.. | .- |.
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirL------aPqkdWevN~P~~l~kvl~~le~iq~~fnkk 526 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNQPAELAKVLAVLEKIQKEFNKK 526 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEee------cccccCCCCCHHHHHHHHHHHHHHHHHhcCc
Confidence 35556666655667777777766643 5666653 33 34677777742 1 11 22
Q ss_pred ----ceeEecC-----------CCc--cccCCCCCCCCCCchhhhccC--C-CCC-----------CccH-HHHHHHHHh
Q 021841 109 ----DGVVALG-----------GPY--IPLKTGRRDGRKSRAEILEQY--L-PDH-----------NDSM-SVVLERFAA 156 (307)
Q Consensus 109 ----daV~~~G-----------GP~--~~v~~GRrD~~~s~~~~a~~~--L-P~p-----------~~~~-~~l~~~F~~ 156 (307)
|-|++.| |-. .++..||-|....-. +++.- | |-. ..+. .-|++.=+-
T Consensus 527 vSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAql 605 (730)
T COG0376 527 VSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQL 605 (730)
T ss_pred cchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHH
Confidence 6677765 333 466789999875422 22111 1 111 1222 346677778
Q ss_pred cCCCcccceeecccc-ccccccccccccccCCCCCCCCCcchHhHhhhcCCCCCCCCCcccccccCCCCCcccchHHHHH
Q 021841 157 IGIDAPGLVALLGSH-SVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRN 235 (307)
Q Consensus 157 ~Gl~~~dlVaLsGaH-TiG~ahc~~f~~Rly~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDN~Yy~~ 235 (307)
.+|+.-||++|.||- .+|.-+..+ ... |.-| .|.++.|.||.|
T Consensus 606 L~LtapemtVLiGGlRvLg~n~g~s------------------------------~~G----VfT~--~pg~LtndFFvn 649 (730)
T COG0376 606 LTLTAPEMTVLIGGLRVLGANYGGS------------------------------KHG----VFTD--RPGVLTNDFFVN 649 (730)
T ss_pred hccCCccceEEEcceEeeccCCCCC------------------------------ccc----eecc--Ccccccchhhhh
Confidence 999999999999874 333322110 000 1222 466677777777
Q ss_pred Hhcc----------c----------CC-----cccccccccCcCcHHHHHHHhhc--HHHHHHHHHHHHHHhhhCC
Q 021841 236 ILDN----------K----------GL-----MMVDHQLATDKRTRPYVKKMAKS--QDYFFKEFSRAITLLSENN 284 (307)
Q Consensus 236 l~~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~Km~~i~ 284 (307)
|+.= + |- -..|..+-+++..|.+.+-||.+ ++.|.++|..||.|..++.
T Consensus 650 LlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 650 LLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred hhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 7631 1 21 12465555677788999999875 7889999999999988753
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.04 E-value=12 Score=30.07 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=11.3
Q ss_pred CcchhHHHHHHHHHHHHHHhhh
Q 021841 1 MGTKAVFLLLALLSFSAVSLRS 22 (307)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~ 22 (307)
|++++.++ ++|++.+++++++
T Consensus 1 MaSK~~ll-L~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLL-LGLLLAALLLISS 21 (95)
T ss_pred CchhHHHH-HHHHHHHHHHHHh
Confidence 88666444 5555544444444
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=48.55 E-value=15 Score=28.64 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCcccccccccc
Q 021841 269 FFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 301 (307)
Q Consensus 269 F~~~Fa~Am~Km~~i~v~tG~~GeiR~~C~~~N 301 (307)
...+|..||.||+.||.-.. -=-+|+-|-
T Consensus 3 m~~~F~~am~KlavLG~d~~----~LiDCSdVI 31 (80)
T PF11895_consen 3 MQSAFKAAMAKLAVLGHDRS----DLIDCSDVI 31 (80)
T ss_dssp HHHHHHHHHHHHCTTTS-GG----GSEE-GGGS
T ss_pred HHHHHHHHHHHHHHhcCChh----hcccchhhc
Confidence 56789999999999875321 223566543
No 21
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=37.93 E-value=23 Score=30.26 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHhcCCCcccc-eeeccccccccccc
Q 021841 145 DSMSVVLERFAAIGIDAPGL-VALLGSHSVGRTHC 178 (307)
Q Consensus 145 ~~~~~l~~~F~~~Gl~~~dl-VaLsGaHTiG~ahc 178 (307)
.++.+.+-.|++|||++.++ |.|--+|-||+++-
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r~ 65 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRF 65 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhhe
Confidence 45677777899999999987 55568999999874
No 22
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.73 E-value=1.6e+02 Score=22.55 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCcCcccchhhhhhccc
Q 021841 48 IIREQVKLLYKRHKNTAFSWLRNIFHDC 75 (307)
Q Consensus 48 iVr~~v~~~~~~d~~~aa~lLRL~FHDC 75 (307)
|.|+.+++.++++|.+-...||+.+--.
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999987543
No 23
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=25.81 E-value=41 Score=28.73 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=19.7
Q ss_pred CCCcccccccCchHHHHHHHHHHHHHHhCcCcccchhhhhhccc
Q 021841 32 GLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDC 75 (307)
Q Consensus 32 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~lLRL~FHDC 75 (307)
.-..++|-++|-+. -.|.=-|-+|||=
T Consensus 133 P~Dn~~Yvk~C~~g-----------------rsPk~TrWwfHDD 159 (161)
T KOG0427|consen 133 PTDNDRYVKNCKNG-----------------RSPKETRWWFHDD 159 (161)
T ss_pred CCccchhhhhccCC-----------------CCcccceeeeccC
Confidence 36788999999653 2455678899983
No 24
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=24.61 E-value=49 Score=24.91 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=19.0
Q ss_pred ccccc--ccCchHHHHHHHHHHHHHHhCcCcccchhh
Q 021841 35 MNFYK--DTCPQAEDIIREQVKLLYKRHKNTAFSWLR 69 (307)
Q Consensus 35 ~~fY~--~sCP~~e~iVr~~v~~~~~~d~~~aa~lLR 69 (307)
.|=|+ -+||+-|-++++ |+.+|++ .|+.+||
T Consensus 14 dGdYrL~itcp~Ke~LlqS-IEgmi~~---~A~~vLR 46 (71)
T PF11619_consen 14 DGDYRLVITCPKKEWLLQS-IEGMIKE---AAVEVLR 46 (71)
T ss_dssp TTCEEEEEEESSHHHHHHH-HHHHHHH---HHHHHHH
T ss_pred CCceEEEEecCcHHHHHHH-HHHHHHH---HHHHHHh
Confidence 45566 469999866654 6666654 3444444
No 25
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=20.29 E-value=24 Score=28.43 Aligned_cols=14 Identities=29% Similarity=1.051 Sum_probs=9.3
Q ss_pred hhcccCCCCCCCccc
Q 021841 71 IFHDCAVQSCDASLL 85 (307)
Q Consensus 71 ~FHDCfv~GCDaSiL 85 (307)
.+|+|| +||.|+.+
T Consensus 4 V~HeC~-g~c~G~f~ 17 (96)
T PF08782_consen 4 VYHECF-GGCRGSFI 17 (96)
T ss_dssp EEE-ST-T-EEEEE-
T ss_pred eEEeec-CccceEec
Confidence 379998 79999985
Done!