Query 021842
Match_columns 307
No_of_seqs 145 out of 1573
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fky_A Glutamine synthetase; b 100.0 8.3E-79 2.9E-83 582.1 28.6 299 2-307 10-308 (370)
2 2d3a_A Glutamine synthetase; l 100.0 4.2E-76 1.4E-80 561.1 28.9 307 1-307 1-307 (356)
3 2ojw_A Glutamine synthetase; a 100.0 3.2E-74 1.1E-78 552.9 29.5 300 2-307 31-334 (384)
4 3qaj_A Glutamine synthetase; A 100.0 1.3E-74 4.3E-79 564.6 15.6 286 3-303 8-310 (444)
5 3ng0_A Glutamine synthetase; G 100.0 2.6E-72 8.9E-77 552.8 28.0 292 2-304 6-337 (473)
6 4hpp_A Probable glutamine synt 100.0 1.7E-71 5.8E-76 542.1 21.4 272 16-307 5-304 (443)
7 1f52_A Glutamine synthetase; A 100.0 1.9E-70 6.6E-75 539.3 23.9 293 2-307 3-335 (468)
8 4acf_A Glutamine synthetase 1; 100.0 1.4E-69 4.7E-74 535.7 24.5 290 3-303 16-349 (486)
9 2j9i_A Glutamate-ammonia ligas 100.0 5.1E-62 1.7E-66 473.4 4.3 272 2-307 3-297 (421)
10 3o6x_A Glutamine synthetase; t 100.0 8.3E-51 2.8E-55 408.6 15.0 236 55-301 128-407 (729)
11 2gwd_A Glutamate cysteine liga 97.6 0.002 7E-08 62.5 16.9 148 106-284 17-210 (449)
12 1r8g_A Hypothetical protein YB 97.2 0.0045 1.5E-07 58.5 13.8 128 123-284 11-165 (372)
13 1nxi_A Conserved hypothetical 78.4 6.6 0.00023 31.2 7.1 90 111-231 22-114 (132)
14 1zpv_A ACT domain protein; str 74.9 2.9 9.9E-05 30.2 3.8 66 170-237 17-82 (91)
15 2fao_A Probable ATP-dependent 63.1 46 0.0016 30.3 9.9 93 179-281 111-208 (309)
16 3nzt_A Glutamate--cysteine lig 56.1 28 0.00096 34.1 7.6 97 188-284 67-204 (525)
17 3ln6_A Glutathione biosynthesi 49.6 13 0.00045 38.0 4.3 97 188-284 54-192 (750)
18 1v5s_A MAP/microtubule affinit 43.1 78 0.0027 24.8 7.0 62 169-230 40-120 (126)
19 3tc3_A UV damage endonuclease; 41.9 49 0.0017 30.1 6.4 65 170-240 60-126 (310)
20 3ose_A Serine/threonine-protei 41.2 39 0.0013 26.2 4.9 62 169-230 40-120 (120)
21 2nyi_A Unknown protein; protei 40.6 32 0.0011 28.6 4.7 66 169-237 104-175 (195)
22 3ln7_A Glutathione biosynthesi 34.3 27 0.00093 35.8 3.8 96 188-284 53-193 (757)
23 1u8s_A Glycine cleavage system 33.4 42 0.0014 27.6 4.3 78 171-251 106-191 (192)
24 2iru_A Putative DNA ligase-lik 29.9 1.3E+02 0.0044 27.3 7.1 77 195-281 134-210 (303)
25 1q02_A Sequestosome 1; helical 27.0 53 0.0018 21.8 2.9 23 99-123 1-23 (52)
26 1va6_A Glutamate--cysteine lig 22.9 56 0.0019 31.9 3.6 94 188-284 56-198 (518)
27 2zqe_A MUTS2 protein; alpha/be 21.7 2.2E+02 0.0075 20.2 8.0 59 169-248 18-76 (83)
28 4e8d_A Glycosyl hydrolase, fam 21.4 81 0.0028 31.3 4.4 59 170-240 32-95 (595)
No 1
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-79 Score=582.13 Aligned_cols=299 Identities=57% Similarity=1.067 Sum_probs=249.5
Q ss_pred hhhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCCCCCCCcccccCCccccccCCCCcEEEEeeeeeecC
Q 021842 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 81 (307)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~lP 81 (307)
.+|.+|++| +| .+..+|+++|+|+.| ++|||+++++.+.+.+++++.|+||||++|+.+++++|++|+|||++++|
T Consensus 10 ~~~~~~~~l--~~-~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P 85 (370)
T 3fky_A 10 QILQKYLEL--DQ-RGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP 85 (370)
T ss_dssp --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred HHHHHHhCc--cc-CCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence 468899999 54 789999999999999 99999999999888888888999999999988888999999999999999
Q ss_pred CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhhhcCCccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCccccc
Q 021842 82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV 161 (307)
Q Consensus 82 w~~~~~a~v~~d~~~~~G~p~~~~PR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (307)
|.++++++|+||+++++|+|++.|||++|||++++++ |+++++|+|+|||||+.+. .+.+++.++.|.++++||+..
T Consensus 86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~ 162 (370)
T 3fky_A 86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV 162 (370)
T ss_dssp TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence 9987699999999999999999999999999999887 9999999999999998763 245666555678888998776
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcCC
Q 021842 162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQG 241 (307)
Q Consensus 162 ~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g 241 (307)
+....+.++++++++++|+++||+|+++|||+|||||||++.|.++|++||+++++|++||+||++||++|||||||+.|
T Consensus 163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g 242 (370)
T 3fky_A 163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG 242 (370)
T ss_dssp STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence 65444457999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCceeeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCcCCCCCCCCCCCCCcccC
Q 021842 242 DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWV 307 (307)
Q Consensus 242 d~~GsG~H~H~SL~~g~n~~gls~~~~fiaGlL~h~~~~~a~~~~nsy~RL~~~~ea~~~~~~~~~ 307 (307)
|++|||||+|+|||+.+.++|++..++||+||+.+++..+++|++||||||+|++|||.+..++||
T Consensus 243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG 308 (370)
T 3fky_A 243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSG 308 (370)
T ss_dssp SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEE
T ss_pred CCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEe
Confidence 479999999999997332456777799999999445555666679999999999999999999996
No 2
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=100.00 E-value=4.2e-76 Score=561.15 Aligned_cols=307 Identities=87% Similarity=1.495 Sum_probs=262.5
Q ss_pred ChhhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCCCCCCCcccccCCccccccCCCCcEEEEeeeeeec
Q 021842 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (307)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~l 80 (307)
|+.++.+.+++++.+.+.++|+++|+|+.|+++|||.++++.+.+.++++++++||||++++..++++|++|+|||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~vD~~g~~~r~k~~~~~~~~~~~~~~~g~~fdgss~~~~~~~~sD~~l~PDt~~~~ 80 (356)
T 2d3a_A 1 MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (356)
T ss_dssp --CHHHHHTCCGGGTCSCEEEEEEEECTTSSCEEEEEEEESSCCCCGGGSCCEEEEGGGTTSSCSSSCEEEEEEEEEEEC
T ss_pred CCccchhhccCCCCCCCeEEEEEEEEcCCCCcccceEEECCcchhhHhhcCcceecccccccccCcCCcEEEEEEEEEEC
Confidence 44445555566777788999999999999989999999999999888888889999999988887799999999999999
Q ss_pred CCCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhhhcCCccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccc
Q 021842 81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG 160 (307)
Q Consensus 81 Pw~~~~~a~v~~d~~~~~G~p~~~~PR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (307)
||.++++++|+||+++++|+|++.|||++|||+++++++.|+++++|+|+|||||+++...+.+++..+.|.++++||+.
T Consensus 81 P~~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~~~g~y~~~ 160 (356)
T 2d3a_A 81 PFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCG 160 (356)
T ss_dssp TTTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCSCSSSCTTC
T ss_pred CcCCCCceEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCeeEEecceEEEEEecCCCcccccccCCCCCCCCCcCcC
Confidence 99875699999999999999999999999999999999999999999999999998764333344433456677888877
Q ss_pred cCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcC
Q 021842 161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240 (307)
Q Consensus 161 ~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~ 240 (307)
.+.+..+.+++++++++.|+++||+|+++|||+|||||||++.|.+++++||+++++|++||+||++||++|||||||+.
T Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~ 240 (356)
T 2d3a_A 161 IGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIP 240 (356)
T ss_dssp CSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSSC
T ss_pred cccchHHHHHHHHHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEECCCccC
Confidence 76554334799999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCceeeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCcCCCCCCCCCCCCCcccC
Q 021842 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWV 307 (307)
Q Consensus 241 gd~~GsG~H~H~SL~~g~n~~gls~~~~fiaGlL~h~~~~~a~~~~nsy~RL~~~~ea~~~~~~~~~ 307 (307)
+|.+|||||+|+||++-+.++|......++++++.++...+++|++||||||++++|||....++||
T Consensus 241 ~d~~GSG~H~H~Sl~~~~~~~g~~~f~~~~~~l~l~h~~~l~a~~~nSYkRL~pg~eap~~~~~swG 307 (356)
T 2d3a_A 241 GDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWG 307 (356)
T ss_dssp SSSCCCBEEEEEECTTTSSTTHHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEE
T ss_pred CCCCCCcceEEechhhhccCCCHHHHHHHHHHHHHHHHHHHHhHccChHHHccCCccCCCcceeEEe
Confidence 4589999999999976322334444555666654444455666688999999999999998899996
No 3
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=100.00 E-value=3.2e-74 Score=552.91 Aligned_cols=300 Identities=52% Similarity=0.992 Sum_probs=257.8
Q ss_pred hhhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCCCCCCCcccccCCccccccCCCCcEEEEeeeeeecC
Q 021842 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 81 (307)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~lP 81 (307)
+.|.+||+++ +.+.++|+++|+|+.|+++|||.+|++.+.+.++.+++|+||||++++..+.++|++|+|||++++|
T Consensus 31 ~~l~~~l~~~---~~~~~~v~~~~~D~~G~~~R~K~ip~~~~~~~~~~~p~~~~dgss~~~~~~~~sD~~l~PDt~~~~P 107 (384)
T 2ojw_A 31 GIKQVYMSLP---QGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDP 107 (384)
T ss_dssp HHHHHHHTSC---CCSCEEEEEEEECTTSSCEEEEEEEESSCCSSGGGSCCEEEEGGGTTSSBTTBCEEEEEEEEEEECT
T ss_pred HHHHHHHhCC---CCCcEEEEEEEECCCCCeeeEEEEEHHHhhhhHhhCccccccCcccccccCCCCcEEEEeeEEEECC
Confidence 4688999984 4568999999999999779999999999888777788899999999876667899999999999999
Q ss_pred CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhhhcCCccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCccccc
Q 021842 82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV 161 (307)
Q Consensus 82 w~~~~~a~v~~d~~~~~G~p~~~~PR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (307)
|.++++++|+||++++||+|++.|||++|||++++++ |+++++|+|+|||||+++.. +.+++.++.|.++++||+..
T Consensus 108 w~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~~-~~~~~~~g~p~~~g~y~~~~ 184 (384)
T 2ojw_A 108 FRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGV 184 (384)
T ss_dssp TTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEEC-CCS-BTTCCTTSCCSCSSSCTTCC
T ss_pred CCCCCeEEEEEEEECCCCCCCCcCHHHHHHHHHHHHh--CCEEEEEeeeEEEEEccCCC-cccccCCCccCCCCCCCccc
Confidence 9875699999999999999999999999999999998 89999999999999987642 22444444567788888876
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcCC
Q 021842 162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQG 241 (307)
Q Consensus 162 ~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g 241 (307)
+....+.++++++++++|+++||+|+++|+|+|||||||++.|+++|++||++++||++||+||++||+.|||||||+.|
T Consensus 185 ~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~Gl~aTFmpKP~~~ 264 (384)
T 2ojw_A 185 GADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPG 264 (384)
T ss_dssp STTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSSCS
T ss_pred ccchHHHHHHHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 65543457999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCceeeEEEeccCCCCCCCHHHHHHHHHHH-HHHHHHHHhHh---CCCCCcCCCCCCCCCCCCCcccC
Q 021842 242 DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL-GLRHSEHIAAY---GEGNERRLTGKHETADINTFKWV 307 (307)
Q Consensus 242 d~~GsG~H~H~SL~~g~n~~gls~~~~fiaGl-L~h~~~~~a~~---~~nsy~RL~~~~ea~~~~~~~~~ 307 (307)
|.+|||||+|+||++.+.++|....+++++|+ ++|+++++++- ++||||||+|++|||....++||
T Consensus 265 d~~GSG~H~H~Sl~~~~~~~g~n~f~~~~~gl~~~h~~~i~a~~p~~~~nsykRL~pg~ea~~~~~~sWG 334 (384)
T 2ojw_A 265 NWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAG 334 (384)
T ss_dssp SSCCCBEEEEEECHHHHSTTTHHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCEE
T ss_pred CCCCCeeeEEeehhhhcCCCchhHHHHHHHHHHHHHHHHheEeccCCCCCchhhccCCcccCCCceEEee
Confidence 57999999999997622134666789999999 77888777751 58999999999999999999997
No 4
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-74 Score=564.63 Aligned_cols=286 Identities=22% Similarity=0.279 Sum_probs=249.7
Q ss_pred hhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCCCCCCCcccccCCcc-ccccCCCCcEEEEee--eeee
Q 021842 3 LLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIFK 79 (307)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~-g~~~~~~~D~~l~PD--t~~~ 79 (307)
.+.+++.. .++.+|++.|+|..| ++|+|.+|++.+.+.++. +++||||++ |+..+.++|++++|| |+++
T Consensus 8 ~~~~~~~~-----~~i~~v~l~~~D~~G-~~r~k~ip~~~~~~~~~~--G~~fdgssi~g~~~~~~~D~~l~PD~~T~~~ 79 (444)
T 3qaj_A 8 DIEKLVKE-----ENVKYIRLQFTDILG-TIKNVEIPVSQLGKALDN--KVMFDGSSIEGFVRIEESDMYLYPDLNTFVI 79 (444)
T ss_dssp HHHHHHHH-----HTCCEEEEEEECSSS-CEEEEEEEGGGHHHHHTT--CCEEETTTSTTSSCTTCCEEECCBCGGGCEE
T ss_pred HHHHHHHh-----CCCCEEEEEEECCCC-CEEEEEEeHHHHHHHHhC--CccccCccccCccCCCCCCEEEEEecCceEE
Confidence 45566665 477888999999999 899999998876543332 467999998 887777899999999 7999
Q ss_pred cCCCCC--CeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhhhcCCc-cEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCC
Q 021842 80 DPFRRG--NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGP 156 (307)
Q Consensus 80 lPw~~~--~~a~v~~d~~~~~G~p~~~~PR~~L~~~~~~~~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~ 156 (307)
+||.++ ++|+|+||+++++|+|++.|||++|||++++++++|++ +++|+|+|||||+.+++ +.+. ..+.++++
T Consensus 80 ~Pw~~~~~~~a~v~cd~~~~dG~p~~~~pR~iLkr~~~~~~~~G~~~~~~g~E~EF~l~~~~~~---g~~~-~~~~~~~~ 155 (444)
T 3qaj_A 80 FPWTAEKGKVARFICDIYNPDGTPFEGDPRNNLKRILKEMEDLGFSDFNLGPEPEFFLFKLDEK---GEPT-LELNDKGG 155 (444)
T ss_dssp EHHHHHHHCEEEEEBCCBCTTSCBCSSCHHHHHHHHHHHHHTTTCCEEEEEEEECEEEEEECSS---SCEE-EEESCCCC
T ss_pred CccccCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHHHcCCCeeeEEeceEEEEEecCCC---CCCC-CcCcCCCC
Confidence 999875 59999999999999999999999999999999999999 99999999999987643 2111 12456677
Q ss_pred cccccCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecc
Q 021842 157 YYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDP 236 (307)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmp 236 (307)
||+..+.+.. .+++++|++.|+++||+|+++|||+|||||||++.|++++++||+++++|++||+||++||+.|||||
T Consensus 156 y~~~~~~d~~--~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmp 233 (444)
T 3qaj_A 156 YFDLAPTDLG--ENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMP 233 (444)
T ss_dssp TTCCTTTSCC--TTHHHHHHHHHHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECCS
T ss_pred ccccCCCcch--HHHHHHHHHHHHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCEEEEcC
Confidence 8766555442 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCCceeeEEEeccC-CCC---C----CCHH-HHHHHHHHHHHHHHHHHhHh--CCCCCcCCCCCCCCCCCCC
Q 021842 237 KPIQGDWNGAGAHANYSTKS-MRN---D----GGFE-VIKKAIEKLGLRHSEHIAAY--GEGNERRLTGKHETADINT 303 (307)
Q Consensus 237 KP~~gd~~GsG~H~H~SL~~-g~n---~----~gls-~~~~fiaGlL~h~~~~~a~~--~~nsy~RL~~~~ea~~~~~ 303 (307)
||+.| .+|||||+|+|||+ |+| + .++| ++++||||||+|++++++++ ++||||||+|++|||+..+
T Consensus 234 KP~~~-~~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~PtvNSYkRl~pg~~AP~~~~ 310 (444)
T 3qaj_A 234 KPLFG-VNGSGMHCNLSLFKNGVNAFFDENADLQLSETAKHFIAGIVKHATSFTAVTNPTVNSYKRLVPGYEAPCYVA 310 (444)
T ss_dssp CSSTT-SCCCCEEEEEEEEETTEETTCCTTSSSSCCHHHHHHHHHHHHTHHHHHHHHSCSSTHHHHSCTTSSSSCBCC
T ss_pred CcCCC-CCCCcceeeeccccCCCcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCCcCCCcce
Confidence 99995 89999999999997 666 1 2576 89999999999999999999 7999999999999998643
No 5
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=100.00 E-value=2.6e-72 Score=552.76 Aligned_cols=292 Identities=21% Similarity=0.259 Sum_probs=249.8
Q ss_pred hhhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCC-CCCCCCcccccCCcc-ccccCCCCcEEEEee--ee
Q 021842 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVS-DPSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AI 77 (307)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~-~~~~~~~~~~dgs~~-g~~~~~~~D~~l~PD--t~ 77 (307)
+.+.++|.- .++.+|++.|+|..| ++|+|.+|++.+.+ .++. ++.||||++ ||..++++|++++|| |+
T Consensus 6 ~~~~~~~~~-----~~i~~V~l~f~D~~G-~~r~k~ip~~~~~~~~~~~--G~~fdgss~~g~~~~~~sD~~l~PD~~T~ 77 (473)
T 3ng0_A 6 QEVLKWIQD-----ENIKIIDLKFIDTPG-IWQHCSFYYDQLDENSFTE--GIPFDGSSIRGWKAINESDMCMVPDPNTA 77 (473)
T ss_dssp HHHHHHHHH-----TTCCEEEEEEECSSS-CEEEEEEEGGGCCGGGGTT--CEEEETTSSTTSCCGGGCEEEEEECGGGC
T ss_pred HHHHHHHHh-----CCCCEEEEEEECCCC-CEEEEEEeHHHHHHHHHhC--CCccccccccccccCCCCcEEEEeecCcc
Confidence 345666665 478888899999999 89999999987665 2332 578999998 887767899999999 89
Q ss_pred eecCCCCCCeEEEEEEEEcC-CCCCCCCCHHHHHHHHHHHhhhcCC--ccEEeeeeeEEEeccCC-----C--------C
Q 021842 78 FKDPFRRGNNILVMCDAYTP-AGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDV-----K--------W 141 (307)
Q Consensus 78 ~~lPw~~~~~a~v~~d~~~~-~G~p~~~~PR~~L~~~~~~~~~~G~--~~~~g~E~EF~l~~~~~-----~--------~ 141 (307)
+++||.++++|+|+||++++ +|+|++.|||++|||+++++++.|+ ++.+|+|+|||||++.. . .
T Consensus 78 ~~~Pw~~~~~a~v~cd~~~~~~g~p~~~~pR~iLkr~~~~~~~~G~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~ 157 (473)
T 3ng0_A 78 TIDPFCKEPTLSMICSIKEPRTGEWYNRDPRTIAAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSV 157 (473)
T ss_dssp EECTTCSSCEEEEEEEEECTTTSSBCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECT
T ss_pred EECCcCCCCcEEEEEEEeECCCCCCCCCChHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeeccccccccccccccccc
Confidence 99999986699999999998 9999999999999999999998876 89999999999998521 0 0
Q ss_pred CCCCC---------CCCCCCCCCCcccccCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcC-CCceEEEcCCChhhHHH
Q 021842 142 PLGWP---------IGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVM-PGQWEFQVGPAVGISAG 211 (307)
Q Consensus 142 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aa 211 (307)
+.+|. .+..+.++++|++..+.+.. ++++++|++.|+++||+|+++|||+| ||||||++.|.+++++|
T Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~d~~--~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~l~aA 235 (473)
T 3ng0_A 158 EGRWNTGREEEGGNLGYKPGYKQGYFPVAPTDTA--QDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVNSA 235 (473)
T ss_dssp TCGGGTTCCCTTCCCCCCCCTTCCSSCCTTTCCC--HHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHH
T ss_pred ccccccccccccCCCCcccCCCccccccCccchh--HHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCHHHHH
Confidence 00111 12234556778765554442 68999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecccCcCCCCCCceeeEEEeccC-CCC---C---CCHH-HHHHHHHHHHHHHHHHHhH
Q 021842 212 DQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKS-MRN---D---GGFE-VIKKAIEKLGLRHSEHIAA 283 (307)
Q Consensus 212 D~~~~~k~~ik~vA~~~Gl~ATFmpKP~~gd~~GsG~H~H~SL~~-g~n---~---~gls-~~~~fiaGlL~h~~~~~a~ 283 (307)
|+++++|++||+||++||++|||||||+.| .+|||||+|+|||+ |+| + .++| ++++||||||+|+++++++
T Consensus 236 D~~~~~k~~vk~vA~~~G~~aTFmpKP~~~-~~GSG~H~H~Sl~~~g~n~F~~~~~~~lS~~~~~fiaGlL~h~~~l~a~ 314 (473)
T 3ng0_A 236 DNLMIYKYVIKNVAKKYGKTVTFMPKPIFN-DNGSGMHVHQSLWKDGQPLFAGDKYAGFSQMGLWYIGGILKHAPALLAF 314 (473)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEETTBSSSGGGBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEcCcccCC-CCCCeeEEEEeeccCCccccCCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 89999999999997 777 2 2566 8999999999999999999
Q ss_pred h--CCCCCcCCCCCCCCCCCCCc
Q 021842 284 Y--GEGNERRLTGKHETADINTF 304 (307)
Q Consensus 284 ~--~~nsy~RL~~~~ea~~~~~~ 304 (307)
+ ++||||||+|++|||+..++
T Consensus 315 ~~Pt~NSYkRL~pg~~AP~~~~W 337 (473)
T 3ng0_A 315 TNPTTNSYKRLVPGFEAPVNLAY 337 (473)
T ss_dssp HSCSTTHHHHBBTTTBCCCBCCE
T ss_pred hCCCcchhhcccCCCcCccceee
Confidence 9 79999999999999987544
No 6
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.7e-71 Score=542.12 Aligned_cols=272 Identities=15% Similarity=0.087 Sum_probs=235.7
Q ss_pred CCEEEEEEEEEeCCCCcceeEEEEcCCCCCCCCCCCcccccCC--cc-ccccC-------CCCcEEEEee--eeeecCCC
Q 021842 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGS--ST-GQAPG-------EDSEVILYPQ--AIFKDPFR 83 (307)
Q Consensus 16 ~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs--~~-g~~~~-------~~~D~~l~PD--t~~~lPw~ 83 (307)
.++.+|++.|+|..| ++|||.+|++.+.+.++. +++|+++ ++ ++... .++|++|+|| |++++||.
T Consensus 5 ~~v~~v~l~~~D~~G-~~r~k~vp~~~~~~~~~~--G~~f~~s~~~~~~~~~~~~~~~~~~~~D~~l~PD~~T~~~~Pw~ 81 (443)
T 4hpp_A 5 QPVRLVSFVTTDLAG-ITRGRSLPLATLEEQLAS--GCGWVPANSSLTPQDLIDESSPWGSHGDLRLLPDPNSRVRVEQG 81 (443)
T ss_dssp CCCCEEEEEEECTTS-CEEEEEEEGGGHHHHHTT--CEEECGGGGGCCTTSCCCTTCSCSSSCCEEEEECGGGCEEECCC
T ss_pred CCCCEEEEEEECCCC-CEEEEEEEHHHHHHHHhC--CcccCchhheeeccCccccccCCCCCCCEEEEEcccceEECCcc
Confidence 567789999999999 999999998876554333 4556654 22 22221 2599999999 89999999
Q ss_pred CC----CeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhhhcCCccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCccc
Q 021842 84 RG----NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYC 159 (307)
Q Consensus 84 ~~----~~a~v~~d~~~~~G~p~~~~PR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (307)
++ ++|+|+||+++++|+|++.|||++|||++++++++|+++++|+|+|||||+. .|.++++||+
T Consensus 82 ~~~~~~~~a~v~cd~~~~dG~p~~~~pR~~L~r~~~~~~~~G~~~~~g~E~EF~l~~~------------~p~~~~~~y~ 149 (443)
T 4hpp_A 82 PDAAAPALDYLHGNLVETDGTPWPACPRSLLRAEVERYRDSGLQVIAAFEHEFSLLGL------------PGERPAAAFS 149 (443)
T ss_dssp SSTTSCCEEEEEEEEECTTSCBCTTCHHHHHHHHHHHHHHTTEEEEEEEEEEEEEECC------------CSSSCCCTTC
T ss_pred cccCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHHHcCCeEEEEeeeEEEEecc------------ccCCCCccCC
Confidence 82 4999999999999999999999999999999999999999999999999963 2445677876
Q ss_pred ccCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCc
Q 021842 160 GVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI 239 (307)
Q Consensus 160 ~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~ 239 (307)
..+.+. .+++++++++.|+++||+|+++|||+|||||||++.|.+++++||+++++|++||+||++||+.|||||||+
T Consensus 150 ~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~ 227 (443)
T 4hpp_A 150 LQAQRA--AGQFPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFAPLPA 227 (443)
T ss_dssp HHHHHH--TTTHHHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEECSSSSS
T ss_pred CCcccc--hHHHHHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccC
Confidence 554433 368999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEeccC--CCC---C----CCHH-HHHHHHHHHHHHHHHHHhHh--CCCCCcCCCCCCCCCCCCCcccC
Q 021842 240 QGDWNGAGAHANYSTKS--MRN---D----GGFE-VIKKAIEKLGLRHSEHIAAY--GEGNERRLTGKHETADINTFKWV 307 (307)
Q Consensus 240 ~gd~~GsG~H~H~SL~~--g~n---~----~gls-~~~~fiaGlL~h~~~~~a~~--~~nsy~RL~~~~ea~~~~~~~~~ 307 (307)
.| .+|||||+|+|||+ |+| + .++| ++++||||||+|++++++++ ++||||||+|++|||+. .+||
T Consensus 228 ~~-~~GsG~H~h~Sl~~~~G~n~f~~~~~~~~lS~~~~~fiaGll~h~~~l~a~~~P~~NSYkRL~pg~~AP~~--~~WG 304 (443)
T 4hpp_A 228 PG-AVTNGVHLHLSLQHADGSPLLYEPGRPNDLSELGEHWAAGVLAHLPALCALTAPTAASYLRLKPHHWSAAY--ACLG 304 (443)
T ss_dssp TT-CCCCCEEEEEEEEETTSCBSSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSGGGHHHHSCSTTCCCB--CCEE
T ss_pred CC-CCcccceeeeeeecCCCCccccCCCCccchhHHHHHHHHHHHHHHHHHHHHhCCCCcchhccCCCCcCCCc--ceec
Confidence 95 89999999999997 577 2 2566 89999999999999999999 78999999999999954 5564
No 7
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=100.00 E-value=1.9e-70 Score=539.32 Aligned_cols=293 Identities=19% Similarity=0.246 Sum_probs=250.0
Q ss_pred hhhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCC-CCCCCcccccCCcc-ccccCCCCcEEEEee--ee
Q 021842 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSD-PSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AI 77 (307)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~-~~~~~~~~~dgs~~-g~~~~~~~D~~l~PD--t~ 77 (307)
+.+.++|.. .++.+|++.|+|..| ++|+|.+|++.+.+. ++ .+++||||++ ||..++++|++|+|| |+
T Consensus 3 ~~~~~~~~~-----~~i~~v~~~~~D~~G-~~r~k~vp~~~~~~~~~~--~g~~fdgss~~g~~~~~~sD~~l~PD~~T~ 74 (468)
T 1f52_A 3 EHVLTMLNE-----HEVKFVDLRFTDTKG-KEQHVTIPAHQVNAEFFE--EGKMFDGSSIGGWKGINESDMVLMPDASTA 74 (468)
T ss_dssp HHHHHHHHH-----TTCCEEEEEEECTTS-CEEEEEEEGGGCCHHHHH--HCEEEEGGGSTTSCCSSCCEEEEEECGGGC
T ss_pred HHHHHHHHh-----CCCCEEEEEEECCCC-CEEEEEEEHHHHHHHHhh--CceeeccccccccccCCCCCEEEEEecCCc
Confidence 345666665 478888899999999 899999998865541 21 3578999988 887767999999999 79
Q ss_pred eecCCCCCCeEEEEEEEEcC-CCCCCCCCHHHHHHHHHHHhhhcCC--ccEEeeeeeEEEeccCC-----CC--------
Q 021842 78 FKDPFRRGNNILVMCDAYTP-AGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDV-----KW-------- 141 (307)
Q Consensus 78 ~~lPw~~~~~a~v~~d~~~~-~G~p~~~~PR~~L~~~~~~~~~~G~--~~~~g~E~EF~l~~~~~-----~~-------- 141 (307)
+++||.++++++|+||++++ +|+|++.|||++||+++++++++|+ ++++|+|+|||||+++. +.
T Consensus 75 ~~~Pw~~~~~~~v~~d~~~~~~G~p~~~~pR~ilk~~~~~l~~~G~~~~~~~G~E~EFfl~~~~~~~~~~~~~~~~~~~~ 154 (468)
T 1f52_A 75 VIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDI 154 (468)
T ss_dssp EECSSCSSCEEEEEEEEECTTTCCCCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECT
T ss_pred EEccccCCCceEEEEEEEeCCCCCcCCCCHHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeccccccCCcccccccccc
Confidence 99999875699999999999 7999999999999999999999999 89999999999997531 00
Q ss_pred CCCCC---------CCCCCCCCCCcccccCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCC-ceEEEcCCChhhHHH
Q 021842 142 PLGWP---------IGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPG-QWEFQVGPAVGISAG 211 (307)
Q Consensus 142 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpG-Q~Ei~l~~~~~l~aa 211 (307)
+.++. .+..+.++++||+..+.+. .++++++|++.|+++||+|++.|||+||| ||||++.|.+++++|
T Consensus 155 ~~~~~~~~~~~~~~~g~~~~~~~~Y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~aA 232 (468)
T 1f52_A 155 EGAWNSSTKYEGGNKGHRPGVKGGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKA 232 (468)
T ss_dssp TCGGGGGCCCTTCCCCCCCCTTCCSSBCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHH
T ss_pred ccccCCCccccccCCCCCCCCCCCccCCCcccc--HHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHHHH
Confidence 00111 1123556778887766544 37999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEecccCcCCCCCCceeeEEEeccC-CCC---C---CCHH-HHHHHHHHHHHHHHHHHhH
Q 021842 212 DQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKS-MRN---D---GGFE-VIKKAIEKLGLRHSEHIAA 283 (307)
Q Consensus 212 D~~~~~k~~ik~vA~~~Gl~ATFmpKP~~gd~~GsG~H~H~SL~~-g~n---~---~gls-~~~~fiaGlL~h~~~~~a~ 283 (307)
|+++++|++||+||++||+.|||||||+.| .+|||||+|+|||+ |+| + .++| ++++||||||+|+++++++
T Consensus 233 D~~~~~k~~vk~vA~~hGl~atFmpKP~~g-~~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGll~h~~~l~a~ 311 (468)
T 1f52_A 233 DEIQIYKYVVHNVAHRFGKTATFMPKPMFG-DNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINAL 311 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeCCCCCC-CCCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhHhH
Confidence 999999999999999999999999999995 89999999999998 777 2 2455 8999999999999999999
Q ss_pred h--CCCCCcCCCCCCCCCCCCCcccC
Q 021842 284 Y--GEGNERRLTGKHETADINTFKWV 307 (307)
Q Consensus 284 ~--~~nsy~RL~~~~ea~~~~~~~~~ 307 (307)
+ ++||||||+|++|||... +||
T Consensus 312 ~ap~~NSYkRL~pg~eAP~~i--~wg 335 (468)
T 1f52_A 312 ANPTTNSYKRLVPGYEAPVML--AYS 335 (468)
T ss_dssp HSCSGGGGGTSSSCSSCCCEE--EEE
T ss_pred hcCCccchhccCCCCcCcCcc--eec
Confidence 9 789999999999999864 553
No 8
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=100.00 E-value=1.4e-69 Score=535.69 Aligned_cols=290 Identities=21% Similarity=0.226 Sum_probs=242.6
Q ss_pred hhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCC-CCCCCcccccCCcc-ccccCCCCcEEEEee--eee
Q 021842 3 LLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSD-PSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIF 78 (307)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~-~~~~~~~~~dgs~~-g~~~~~~~D~~l~PD--t~~ 78 (307)
+|.+++.- .++.+|++.|+|..| ++|+|.+|++.+.+. ++ .+++||||++ ||..+.++|++++|| |++
T Consensus 16 dv~~~i~~-----~~I~~V~l~f~D~~G-~~r~k~ip~~~~~~~~~~--~G~~fdgssi~G~~~~~~sD~~l~PD~~T~~ 87 (486)
T 4acf_A 16 DVFKLAKD-----EKVEYVDVRFCDLPG-IMQHFTIPASAFDKSVFD--DGLAFDGSSIRGFQSIHESDMLLLPDPETAR 87 (486)
T ss_dssp HHHHHHHH-----TTCCEEEEEEECSSS-CEEEEEEEGGGCSHHHHH--TCEEEEGGGSTTSCCGGGCEEEEEECGGGCE
T ss_pred HHHHHHHH-----CCCcEEEEEEECCCC-cEEEEEEEHHHHHHHHHH--CCCeeecccccccccCCCCCEEEEEccceeE
Confidence 45555554 578888899999999 899999998876542 22 2567999998 998877899999999 799
Q ss_pred ecCCCCCCeEEEEEEEEcC-CCCCCCCCHHHHHHHHHHHhhhc--CCccEEeeeeeEEEeccCC-----CC---------
Q 021842 79 KDPFRRGNNILVMCDAYTP-AGEPIPTNKRHAAAKIFSHSDVV--AEEPWYGIEQEYTLLQKDV-----KW--------- 141 (307)
Q Consensus 79 ~lPw~~~~~a~v~~d~~~~-~G~p~~~~PR~~L~~~~~~~~~~--G~~~~~g~E~EF~l~~~~~-----~~--------- 141 (307)
++||.++.++.|+|+++++ +|+|++.|||++||++++++++. |+++.+|+|+|||||++.. +.
T Consensus 88 ~~Pw~~~~~~~v~~~~~d~~~g~P~~~~pR~iLk~~~~~~~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~ 167 (486)
T 4acf_A 88 IDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAIS 167 (486)
T ss_dssp ECSSCSSCEEEEEEEEECTTTCCBCTTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTT
T ss_pred ECCcCCCccEEEEEEEeeCCCCCCCCCCchHHHHHHHHHHHHcCCcceecccceeEEEEeccccccccccCCcccCCccc
Confidence 9999988788999999985 89999999999999999999875 5588899999999997421 00
Q ss_pred ----------CCCCCC-CCCCCCCCCcccccCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCC-CceEEEcCCChhhH
Q 021842 142 ----------PLGWPI-GGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMP-GQWEFQVGPAVGIS 209 (307)
Q Consensus 142 ----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gp-GQ~Ei~l~~~~~l~ 209 (307)
..+.+. +..+.....||...+.+. + +++++++++.|+++||+|+++|||+|| |||||++.|.++|+
T Consensus 168 g~~~~~~~~~~~g~p~~~~~~~~~~~y~~~~~~~~-~-~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~~~l~ 245 (486)
T 4acf_A 168 GWWNTGAATEADGSPNRGYKVRHKGGYFPVAPNDQ-Y-VDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLH 245 (486)
T ss_dssp BGGGTTCSBCTTSCBCCCCCBCTTCCSSBCTTTSC-C-HHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHH
T ss_pred cccCCCCcccCCCCCCCCcccccCCccccCCcchh-H-HHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCcchhh
Confidence 011111 112233455655444433 2 699999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEecccCcCCCCCCceeeEEEeccC-CCC----C---CCHH-HHHHHHHHHHHHHHHH
Q 021842 210 AGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKS-MRN----D---GGFE-VIKKAIEKLGLRHSEH 280 (307)
Q Consensus 210 aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~gd~~GsG~H~H~SL~~-g~n----~---~gls-~~~~fiaGlL~h~~~~ 280 (307)
+||+++++|++||+||++||+.|||||||+.| .+|||||+|+|||+ |+| + .++| ++++||||||+|++++
T Consensus 246 aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~-~~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGll~h~~~l 324 (486)
T 4acf_A 246 AADDMQLYKYIIKNTAWQNGKTVTFMPKPLFG-DNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSL 324 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEESSBCTTSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCeEEEeeccccC-CCcccceeeeeeccCCCccccccccccccchHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999995 89999999999998 555 2 2566 8999999999999999
Q ss_pred HhHh--CCCCCcCCCCCCCCCCCCC
Q 021842 281 IAAY--GEGNERRLTGKHETADINT 303 (307)
Q Consensus 281 ~a~~--~~nsy~RL~~~~ea~~~~~ 303 (307)
++++ ++||||||++++|||+..+
T Consensus 325 ~a~~~PtvNSYkRl~pg~~AP~~~~ 349 (486)
T 4acf_A 325 LAFTNPTVNSYKRLVPGYEAPINLV 349 (486)
T ss_dssp HHHHSCSTTHHHHSSTTSSSCSBSC
T ss_pred eeeecCCCcchhccCCCCcCCceeE
Confidence 9999 8999999999999997543
No 9
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=100.00 E-value=5.1e-62 Score=473.42 Aligned_cols=272 Identities=15% Similarity=0.120 Sum_probs=225.8
Q ss_pred hhhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCCCCCCCcccccCCc-c-ccc-cCCCCcEEEEee--e
Q 021842 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSS-T-GQA-PGEDSEVILYPQ--A 76 (307)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~-~-g~~-~~~~~D~~l~PD--t 76 (307)
+.+.++|.. .++.+|+++|+|+.| ++|||.+|++.+ +.+. .+++|||++ + ++. .+.++|++|+|| |
T Consensus 3 ~~~~~~l~~-----~~i~~v~~~~~D~~G-~~r~k~ip~~~~-~~~~--~g~~~~gs~~~~~~~~~~~~sD~~l~PD~~T 73 (421)
T 2j9i_A 3 EHVLTMLNE-----HAAAFVRFEATDAAG-ASRSKSIPAQFF-EKVI--HARGYLEDGEVNAGAAGAAASDIVLMPELST 73 (421)
T ss_dssp HHHHHHHHH-----TTCSEEEEEEECSSS-CEEEEEEEGGGC-CTTH--HHHCEEECGGGSTTTCCTTCCCEEEEECSSC
T ss_pred HHHHHHHHh-----CCCCEEEEEEECCCC-CEEEEEEEHHHH-HHhh--cCCeeecccCcccccccCCCCCEEEEEecCc
Confidence 346666665 478889999999999 899999999977 3332 247888874 4 553 455699999999 7
Q ss_pred eeecCC-CCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhhhcCC--ccEEeeeeeEEEeccCCCCCCCCCCCCCCCC
Q 021842 77 IFKDPF-RRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGP 153 (307)
Q Consensus 77 ~~~lPw-~~~~~a~v~~d~~~~~G~p~~~~PR~~L~~~~~~~~~~G~--~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~ 153 (307)
++++|| .++ +++|+|| +|+|++.|||++||+++++++++|+ ++++|+|+|||||+++.. +.+
T Consensus 74 ~~~~Pw~~~~-~a~v~cd----dG~P~~~~pR~iLk~~~~~~~~~G~~d~~~~g~E~EF~l~~~~~~-~~~--------- 138 (421)
T 2j9i_A 74 AAVAAAAAAA-TAAVICD----GGAAAAASPRYIARAALAQLQAAGAAAGLLSAFIADFCIFGVPEV-INS--------- 138 (421)
T ss_dssp CEECTTSSSS-EEEEEEE----EESSCSCCHHHHHHHHHHHHHHTTSCSEECCEECCCCEEESCCEE-EEC---------
T ss_pred eEEcCcCCCC-eEEEEcC----CCCCCCCChHHHHHHHHHHHHhcCCccCceEEeeeEEEEEecCCC-CCC---------
Confidence 999999 664 9999999 7999999999999999999999999 999999999999987531 000
Q ss_pred CCCcccccCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCCh-hhHHHHHHHHHHHHHHHHHHHcCcEE
Q 021842 154 QGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAV-GISAGDQLWVARYILERITEIAGVVL 232 (307)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~-~l~aaD~~~~~k~~ik~vA~~~Gl~A 232 (307)
...||...+.... .++++++++.|+ +||+|++.|||+|||||||++.|.+ ++++||+++++|++||+||++||+.|
T Consensus 139 ~p~y~~~~~~~~~--~~~~~~i~~~l~-~Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~~a 215 (421)
T 2j9i_A 139 KTISFPASTTAAA--ADQPQEAAAGGA-AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIA 215 (421)
T ss_dssp SSCEEEECCCTTC--TTGGGSCCTTCC-CSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEE
T ss_pred CCCcCCCCcccch--hHHHHHHHHHHh-CCCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1124443333332 477899999999 9999999999999999999999999 99999999999999999999999999
Q ss_pred EecccCcCCCCCCceeeEEEeccC----CCC---CC---CHH-HHHHHHHHHHHHHHHHHhHh--CCCCCcCCCCCCCCC
Q 021842 233 SFDPKPIQGDWNGAGAHANYSTKS----MRN---DG---GFE-VIKKAIEKLGLRHSEHIAAY--GEGNERRLTGKHETA 299 (307)
Q Consensus 233 TFmpKP~~gd~~GsG~H~H~SL~~----g~n---~~---gls-~~~~fiaGlL~h~~~~~a~~--~~nsy~RL~~~~ea~ 299 (307)
|||||| + .+|||| +|+|||+ |+| ++ ++| ++++||||||+|++++++++ ++|||||+ .+||
T Consensus 216 tFmpKP--~-~~GSG~-~h~Sl~~~~~~G~nlf~~~~~~~ls~~~~~~iaGil~h~~~l~a~~~p~~NSYk~~---~~ap 288 (421)
T 2j9i_A 216 SAAAAA--A-AAAAGA-GSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAAAAAAA---AAGA 288 (421)
T ss_dssp ECCTTS--S-TTSCCC-BCCEEECEEETTEESSCSSSGGGCCHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHT---SSST
T ss_pred EEcCCc--C-CCCCce-EEEeccccCCCCceeecCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCccccCCC---CCCC
Confidence 999999 5 899999 9999995 666 21 455 89999999999999999999 78999965 4577
Q ss_pred CCC-CcccC
Q 021842 300 DIN-TFKWV 307 (307)
Q Consensus 300 ~~~-~~~~~ 307 (307)
... .++||
T Consensus 289 ~~~~~~~wG 297 (421)
T 2j9i_A 289 AAAAATAWG 297 (421)
T ss_dssp TCCCEEEEE
T ss_pred cCeeeeeee
Confidence 533 23775
No 10
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=100.00 E-value=8.3e-51 Score=408.61 Aligned_cols=236 Identities=21% Similarity=0.232 Sum_probs=177.8
Q ss_pred ccCCcc---ccccCCCCcEEEEee--e-eeecCCCCCCeEEEEEEEEcCCCC------CCCCCHHHHHHHHHHHhhhcCC
Q 021842 55 YDGSST---GQAPGEDSEVILYPQ--A-IFKDPFRRGNNILVMCDAYTPAGE------PIPTNKRHAAAKIFSHSDVVAE 122 (307)
Q Consensus 55 ~dgs~~---g~~~~~~~D~~l~PD--t-~~~lPw~~~~~a~v~~d~~~~~G~------p~~~~PR~~L~~~~~~~~~~G~ 122 (307)
.||||+ |+....++++++.|| + .++.| + |..+.|.+++.+|+ |+..|||++|+++++.++..|.
T Consensus 128 ~DgSS~p~gG~r~t~earg~~~~D~ts~afi~~---~-TL~IP~~f~s~~Ge~ld~ktPL~rsPR~ilk~A~~~Lk~~G~ 203 (729)
T 3o6x_A 128 PDASSFPNGGIRNTFEARGYTAWDGSSPAFVVD---T-TLCIPTIFISYTGEALDYKTPLLKALAAVDKAATEVCQLFDK 203 (729)
T ss_dssp --------------------CCBCSSSCCEEET---T-EEECCBCCC----CCCBSHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CccccCCCccchhhhhccCceecCCCCCeEEeC---C-eEEEEEEEEeCCCCcCCCCCchhhCHHHHHHHHHHHHHHcCC
Confidence 799988 888778899999999 3 67776 3 89999999987775 5888999999999999999997
Q ss_pred -----ccEEeeeeeEEEeccCCC--CCC----CCC-CCCCCCCCC-----CcccccCcchhhHHHHHHHHHHHHHHcCCe
Q 021842 123 -----EPWYGIEQEYTLLQKDVK--WPL----GWP-IGGYPGPQG-----PYYCGVGADKAWGRDIVDSHYKACLYAGIN 185 (307)
Q Consensus 123 -----~~~~g~E~EF~l~~~~~~--~~~----~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ 185 (307)
++.+|+|+|||||++... .+. |.. .+..| .++ +||...+ .. ..+++++|++.|+++||+
T Consensus 204 d~~~v~~~~G~E~EFFLfd~~~~~~r~dl~~tGrtl~G~~P-~kgq~l~d~Yf~~~p--d~-~~~~~~di~~~L~~~GI~ 279 (729)
T 3o6x_A 204 NITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSS-AKDQQLEDHYFGSIP--PR-VTAFMKELEIECHKLGIP 279 (729)
T ss_dssp CCCCEEEEEEEEECEEEEEHHHHHSCTTHHHHSSCSCCCC---------------CC--HH-HHHHHHHHHHHHHHHTCC
T ss_pred CCccceEEEEeccEEEEEecchhccCcccccccccccCCCC-CCCCCCCCccCCCCc--hh-HHHHHHHHHHHHHHCCCC
Confidence 699999999999987421 111 110 11122 233 6665555 23 379999999999999999
Q ss_pred eeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcCCCCCCceeeEEEeccC--CCC---C
Q 021842 186 ISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKS--MRN---D 260 (307)
Q Consensus 186 ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~gd~~GsG~H~H~SL~~--g~n---~ 260 (307)
|++.|+|+|||||||++.|.++++|||+++++|++||+||++||+.|||||||+.| .+|||||+|+|||+ |+| +
T Consensus 280 ve~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hGl~ATFMPKP~~g-~nGSG~HvH~SL~~~~G~NLF~~ 358 (729)
T 3o6x_A 280 VKTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYNG-VNGSGKHNNWSLCTDTGINLFAP 358 (729)
T ss_dssp EEEECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECSSCSSTT-SCCCBEEEEEEEEETTCCCSSCC
T ss_pred eEEeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCC-CCCCcceeeccccCCCCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999995 99999999999996 677 2
Q ss_pred C----C---HH-HHHHHHHHHHHHHHHHHhHh--CCCCCcCCCCCCCCCCC
Q 021842 261 G----G---FE-VIKKAIEKLGLRHSEHIAAY--GEGNERRLTGKHETADI 301 (307)
Q Consensus 261 ~----g---ls-~~~~fiaGlL~h~~~~~a~~--~~nsy~RL~~~~ea~~~ 301 (307)
+ + ++ .+++||||||+|++++++++ ++||| || +++|||..
T Consensus 359 ~d~~~~~~~~s~~~~~fIaGVLkHa~aL~A~~aPt~NSY-RL-~g~EAP~~ 407 (729)
T 3o6x_A 359 GKNPKGNMLFLTFLVNVLMMVHKNQDLLRASIMSAGNSH-RL-GANEAPPA 407 (729)
T ss_dssp CSSTTTCHHHHHHHHHHHHHHHHTHHHHHHHSCCHHHHT-TS-SSSSCCCS
T ss_pred CCCccchhhHHHHHHHHHHHHHHhHHHHHHHhCCCcccc-cc-CCCcCCch
Confidence 1 1 24 78999999999999999999 68999 99 89999987
No 11
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=97.60 E-value=0.002 Score=62.50 Aligned_cols=148 Identities=17% Similarity=0.117 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhhhcCCccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccCcchhhHHHHHHHHHHHHHHcCCe
Q 021842 106 KRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGIN 185 (307)
Q Consensus 106 PR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ 185 (307)
.+..|.+.+++--..+-.+++|+|.||++++.++. .+ .++ . . ..++++.+.+. .|..
T Consensus 17 ~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~---------~~---~~~-~------~-~~~lL~~l~~~---~g~~ 73 (449)
T 2gwd_A 17 TREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTL---------RP---MKY-D------Q-IAELLNSIAER---FEWE 73 (449)
T ss_dssp CHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTC---------CB---CCH-H------H-HHHHHHHHHHH---HTCE
T ss_pred CHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCC---------CC---CCh-H------H-HHHHHHHHHHh---hccC
Confidence 34444444444322345789999999999998531 11 111 0 1 13555555332 2321
Q ss_pred -------e-------eeecCCcCCCceEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCcEE---Eecc-----------
Q 021842 186 -------I-------SGINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGVVL---SFDP----------- 236 (307)
Q Consensus 186 -------v-------e~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A---TFmp----------- 236 (307)
+ ..+..|.+ +|+|++..|. +.-++++++...+..++++|+++|+.. .+.|
T Consensus 74 ~~~~~~~~~~l~~~~~~i~~E~~-~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~~ 152 (449)
T 2gwd_A 74 KVMEGDKIIGLKQGKQSISLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMP 152 (449)
T ss_dssp EEEETTEEEEEEETTEEEEECTT-CCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCS
T ss_pred ccccccccccccCCCceEEecCC-ceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCCC
Confidence 1 12666776 9999999997 566799999999999999999999764 2223
Q ss_pred cCc----------CCCCC-------CceeeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 021842 237 KPI----------QGDWN-------GAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY 284 (307)
Q Consensus 237 KP~----------~gd~~-------GsG~H~H~SL~~g~n~~gls~~~~fiaGlL~h~~~~~a~~ 284 (307)
||- .| .. -+|+|+|+++.+.. .+...+..++...|-+++++
T Consensus 153 ~~RY~~m~~~~~~~g-~~g~~mm~~~~g~qVhl~~~~~~------~~~~~~~~~~~~~P~llALs 210 (449)
T 2gwd_A 153 KGRYDIMRNYMPKVG-SLGLDMMLRTCTVQVNLDFSSEA------DMIRKFRAGLALQPIATALF 210 (449)
T ss_dssp CHHHHHHHHHGGGTC-SSHHHHHHHBCEEEEEECCSSHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhc-hhHHHHhhcceeeEEEecCCCHH------HHHHHHHHHHHHHHHHHHHH
Confidence 321 12 22 58899999998621 24455566777778777777
No 12
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=97.24 E-value=0.0045 Score=58.47 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=84.6
Q ss_pred ccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEc
Q 021842 123 EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQV 202 (307)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 202 (307)
.+.+|+|.|+++++++.. .+. ++. ..+++.+-..+ .| ..+..|..-+|.|++.
T Consensus 11 ~~~~GiE~E~~~Vd~~~g---------~~~---~~~----------~~~l~~~~~~~--~~---~~it~E~~~~qlEl~t 63 (372)
T 1r8g_A 11 PFTLGIELEMQVVNPPGY---------DLS---QDS----------SMLIDAVKNKI--TA---GEVKHDITESMLELAT 63 (372)
T ss_dssp TTCEEEEEEEEEEETTTT---------EEC---SCC----------HHHHTTTSSSC--SS---SEEEECSSSSEEEEEC
T ss_pred CCceEEEEEEeeECCCCC---------CcC---ccH----------HHHHHhchhcc--cC---CcccchhhccEEEecC
Confidence 468999999999998531 111 110 12332210000 02 4578899999999999
Q ss_pred CCC-hhhHHHHHHHHHHHHHHHHHHHcCcEE---Eeccc-----------Cc------------CCCCCCceeeEEEecc
Q 021842 203 GPA-VGISAGDQLWVARYILERITEIAGVVL---SFDPK-----------PI------------QGDWNGAGAHANYSTK 255 (307)
Q Consensus 203 ~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A---TFmpK-----------P~------------~gd~~GsG~H~H~SL~ 255 (307)
.|. +.-++.+.+...+..++++|.++|+.. .+.|+ |. . ...-+|+|+|+|+.
T Consensus 64 ~p~~~~~e~~~~L~~~~~~~~~~a~~~g~~l~~~g~~P~~~~~~~~i~~~~rY~~l~~~~g~~~~-~~~i~g~hvhv~~~ 142 (372)
T 1r8g_A 64 DVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQ-QATVFGQHVHVGCA 142 (372)
T ss_dssp CSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGC-SCCBCEEEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEecCCCCCCCCccCCCCCchHHHHHHHHHHHHHH-hhceeeEEEEeCCC
Confidence 996 577799999999999999999988764 33332 21 2 12449999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 021842 256 SMRNDGGFEVIKKAIEKLGLRHSEHIAAY 284 (307)
Q Consensus 256 ~g~n~~gls~~~~fiaGlL~h~~~~~a~~ 284 (307)
+.. .....+-.++.+.|-++++|
T Consensus 143 ~~~------~~~~~~~~~~~~~p~l~aL~ 165 (372)
T 1r8g_A 143 SGD------DAIYLLHGLSRFVPHFIALS 165 (372)
T ss_dssp SHH------HHHHHHHHHHTTHHHHHHHH
T ss_pred CHH------HHHHHHHHHHHHHHHHHHHH
Confidence 621 23444555666677777777
No 13
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=78.36 E-value=6.6 Score=31.24 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=59.0
Q ss_pred HHHHHHhhhcCCccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccCcchhhHHHHHHHHHHHHHHcCCeeeeec
Q 021842 111 AKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGIN 190 (307)
Q Consensus 111 ~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h 190 (307)
+++++.+++.|-.+..-.++||++.=++. +-++++...+.+.|..|+..-
T Consensus 22 ~~Vl~~L~e~Gddl~~~r~IEH~~~F~de------------------------------~~~e~~a~~~~~~Gy~v~~~~ 71 (132)
T 1nxi_A 22 RDIIQALLEDGSDPDALYEIEHHLFAEDF------------------------------DKLEKAAVEAFKMGFEVLEAE 71 (132)
T ss_dssp HHHHHHHHHHTCCTTSCEEEEEEEEESCH------------------------------HHHHHHHHHHHHHTCCCBCCC
T ss_pred HHHHHHHHhCCCCcCCCeEEEEEEEeCCH------------------------------HHHHHHHHHHHHCCCEEEecc
Confidence 56788888899999999999998874421 122233333477898887432
Q ss_pred C---CcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcE
Q 021842 191 G---EVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVV 231 (307)
Q Consensus 191 ~---E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ 231 (307)
. |-|-..|++.+.....+...+=.-...++.+ +|+++|-.
T Consensus 72 ~~e~e~g~~~~~~~i~~~~~l~~~~I~~~~~~L~~-lA~~~~G~ 114 (132)
T 1nxi_A 72 ETEDEDGNKLLCFDATMQSALDAKLIDEQVEKLVN-LAEKFDII 114 (132)
T ss_dssp CBCCSSCSSBEEEEEEEEECSCHHHHHHHHHHHHH-HHHHHTCE
T ss_pred cccCCCCceeEEEEEEEeccCCHHHHHHHHHHHHH-HHHHhCcE
Confidence 2 3333479999988888776554444445444 77777653
No 14
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=74.94 E-value=2.9 Score=30.17 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEeccc
Q 021842 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPK 237 (307)
Q Consensus 170 ~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpK 237 (307)
.++.++...+.+.|++|..++.....|.+.+.+.-.-+ ..+++-.++.-+++++.+.|+.+++.+.
T Consensus 17 Gila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~~~l~~l~~~L~~~~~~~~~~~~~~~~ 82 (91)
T 1zpv_A 17 GIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EKQDFTYLRNEFEAFGQTLNVKINIQSA 82 (91)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SCCCHHHHHHHHHHHHHHHTEEEEEEEG
T ss_pred CHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHcCCEEEEeeH
Confidence 57888888889999999998877666777766654211 1123445667789999999999988654
No 15
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=63.11 E-value=46 Score=30.28 Aligned_cols=93 Identities=16% Similarity=0.278 Sum_probs=61.7
Q ss_pred HHHcC-CeeeeecCCcC----CCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcCCCCCCceeeEEEe
Q 021842 179 CLYAG-INISGINGEVM----PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYS 253 (307)
Q Consensus 179 l~~~G-i~ve~~h~E~g----pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~gd~~GsG~H~H~S 253 (307)
+.++| |++.....-.+ |.+.-|+|.|.+++.-++-. -+=..+|++-.+.||. +| ||- ..|.|+||-+-
T Consensus 111 ~aq~~~lE~H~w~~~~~~~~~PD~lvfDLDP~~~~~f~~v~-~aA~~~r~~L~~lGL~-~f-~KT----SGgkGlHV~vP 183 (309)
T 2fao_A 111 AVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRML-EATQLSLTLLDELGLR-AF-LKT----SGGKGMHLLVP 183 (309)
T ss_dssp HHHTTEEEEEECSSCTTCTTSCSEEEEEEEECTTSCHHHHH-HHHHHHHHHHHHHTCC-CE-EEE----CSSSSEEEEEE
T ss_pred HHHhCcEEeeCCcccCCCCCCCCEEEEECCCCcCCCHHHHH-HHHHHHHHHHHHcCCc-ee-eEc----cCCCeeEEEEE
Confidence 34565 55555433332 88999999999887655544 3344589999999996 45 672 35799999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021842 254 TKSMRNDGGFEVIKKAIEKLGLRHSEHI 281 (307)
Q Consensus 254 L~~g~n~~gls~~~~fiaGlL~h~~~~~ 281 (307)
|...- +-...+.|.-.+-.++.+..
T Consensus 184 l~~~~---~~~~vr~fa~~~A~~l~~~~ 208 (309)
T 2fao_A 184 LERRH---GWDEVKDFAQAISQHLARLM 208 (309)
T ss_dssp CCSCS---CHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCC---CHHHHHHHHHHHHHHHHHhC
Confidence 97521 22345666666666665554
No 16
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=56.13 E-value=28 Score=34.09 Aligned_cols=97 Identities=10% Similarity=-0.070 Sum_probs=54.5
Q ss_pred eecCCcCCCceEEEcCCC-hhhHHHHHHHHHHHHHHHHH-HHcCcEEEecccCcCC------------------------
Q 021842 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERIT-EIAGVVLSFDPKPIQG------------------------ 241 (307)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA-~~~Gl~ATFmpKP~~g------------------------ 241 (307)
.+.+|..-.|.|+...+. +.-++-+.+-..+.++.+.+ ....|-..=||=|-..
T Consensus 67 ~IttDfsEsqlE~iTp~~~s~~ea~~~L~~l~~~v~~~l~~~E~LWp~SmPl~~~~~~ipiA~yg~sn~g~~k~~YR~gL 146 (525)
T 3nzt_A 67 SITVDFSENLLELITKPHDSIDKAIGELYQLSAFTLDNMHSDEIILNTSMPLSANDNDIQEADFGSSNSGRMKRVYRKGL 146 (525)
T ss_dssp SEEESSBTTEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSCCSCCGGGCCBCCCCSSHHHHHHHHHHHHH
T ss_pred CCCchhhhhHhhhcCCCCCCHHHHHHHHHHHHHHHHHhhCCCCeEEeecCCCCCCcCCCceeeccccccCcchHHHHHHH
Confidence 344566666777776665 35556666666666655554 4445544446511110
Q ss_pred -------CCCCceeeEEEeccCC--C-----CCCCHH-HHHHHHHHHHHHHHHHHhHh
Q 021842 242 -------DWNGAGAHANYSTKSM--R-----NDGGFE-VIKKAIEKLGLRHSEHIAAY 284 (307)
Q Consensus 242 -------d~~GsG~H~H~SL~~g--~-----n~~gls-~~~~fiaGlL~h~~~~~a~~ 284 (307)
.+.=||.|+|+|+-+. + ....-+ .-...|-+.+.+..=++.+|
T Consensus 147 ~~rYG~~~q~IsGiH~Nfsl~~~~~~~l~~~~~~~~s~~Y~~Lirnf~Ry~Wll~YLf 204 (525)
T 3nzt_A 147 SARYGKIMQIISGIHYNFSFDKDLISNIATNKQVSISDIYFDVLNNYFEFMWLLPYLF 204 (525)
T ss_dssp HHHHCSGGGGCCBEEEEEECCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHhchhheeeeeEEEEecCCHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 0123799999999761 0 000122 33455666777888888888
No 17
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=49.63 E-value=13 Score=38.02 Aligned_cols=97 Identities=14% Similarity=-0.086 Sum_probs=64.0
Q ss_pred eecCCcCCCceEEEcCCC-hhhHHHHHHHHHHHHHHHHH-HHcCcEEEeccc-------CcCC-----------------
Q 021842 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERIT-EIAGVVLSFDPK-------PIQG----------------- 241 (307)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA-~~~Gl~ATFmpK-------P~~g----------------- 241 (307)
.+.+|..-.|.|+...+. +.-++.+.+...+.++.+.+ ....|-+.=||= |+..
T Consensus 54 ~i~~d~~es~lE~~Tpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lw~~smp~~l~~~~i~ia~~~~~~~~~Yr~~l~~ry 133 (750)
T 3ln6_A 54 YIQTDYSEPQLELITPIAKDSQEAIRFLKAISDVAGRSINHDEYLWPLSMPPKVREEDIQIAQLEDAFEYDYRKYLEKTY 133 (750)
T ss_dssp SEEESSBSSEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSCSSCCTTTCCBCCCSCHHHHHHHHHHHHHH
T ss_pred CccchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeecCCCCCCCCCCCcccCCCCCcHHHHHHHHHHh
Confidence 577799999999999997 57778888888888877775 443343333321 2220
Q ss_pred ---CCCCceeeEEEeccCCC--------CCCCH----H-HHHHHHHHHHHHHHHHHhHh
Q 021842 242 ---DWNGAGAHANYSTKSMR--------NDGGF----E-VIKKAIEKLGLRHSEHIAAY 284 (307)
Q Consensus 242 ---d~~GsG~H~H~SL~~g~--------n~~gl----s-~~~~fiaGlL~h~~~~~a~~ 284 (307)
.+.=+|+|+|+|+-+.- ..... + .....+-+++.+.+-++++|
T Consensus 134 g~~~q~i~G~Hvn~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~l~r~~~r~~w~l~~L~ 192 (750)
T 3ln6_A 134 GKLIQSISGIHYNLGLGQELLTSLFELSQADNAIDFQNQLYMKLSQNFLRYRWLLTYLY 192 (750)
T ss_dssp CTGGGGCCCEEEEEEECHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhceeeeEEEEecCChHHHHHHhhccccchHHHHhhhHHHHHHHHHHhHHHHHHHHh
Confidence 01237999999997621 00111 1 23356778889999999999
No 18
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=43.14 E-value=78 Score=24.82 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCeeee--------ecCCc---CCCceEEEcCCChhhH--------HHHHHHHHHHHHHHHHHHcC
Q 021842 169 RDIVDSHYKACLYAGINISG--------INGEV---MPGQWEFQVGPAVGIS--------AGDQLWVARYILERITEIAG 229 (307)
Q Consensus 169 ~~~l~~i~~~l~~~Gi~ve~--------~h~E~---gpGQ~Ei~l~~~~~l~--------aaD~~~~~k~~ik~vA~~~G 229 (307)
.+++.+|++.|.++||+.+. .|... ..=||||.+--.+.+. ..-+.+.||.++.+|..+..
T Consensus 40 ~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~GI~fKRisGd~w~YK~lc~~IL~eLk 119 (126)
T 1v5s_A 40 GDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELK 119 (126)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCceeEEEeeccCchhHHHHHHHHHHHHHh
Confidence 68999999999999998886 12211 1248999876443211 11246899999999999887
Q ss_pred c
Q 021842 230 V 230 (307)
Q Consensus 230 l 230 (307)
+
T Consensus 120 L 120 (126)
T 1v5s_A 120 L 120 (126)
T ss_dssp C
T ss_pred c
Confidence 6
No 19
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=41.87 E-value=49 Score=30.11 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCeeeeecCCcCC--CceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcC
Q 021842 170 DIVDSHYKACLYAGINISGINGEVMP--GQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240 (307)
Q Consensus 170 ~~l~~i~~~l~~~Gi~ve~~h~E~gp--GQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~ 240 (307)
.-+.++++...+.||.+--+-++.=| ...|+.+.+.+ .+++. =.-|.++|+++|++.||.|-+|.
T Consensus 60 ~~l~~il~~n~~~~I~~yRiSS~l~P~~thp~~~~~~~~--~~~~~----l~~iG~~a~~~~iRLS~HPgqF~ 126 (310)
T 3tc3_A 60 LCLKNILEWNLKHEILFFRISSNTIPLASHPKFHVNWKD--KLSHI----LGDIGDFIKENSIRISMHPGQYV 126 (310)
T ss_dssp HHHHHHHHHHHHTTCCEEECCTTSSTTTTSTTCCCCHHH--HTHHH----HHHHHHHHHHTTCEEEECCCTTC
T ss_pred HHHHHHHHHHHHcCCEEEEeCcccCCCccccccccchHH--HHHHH----HHHHHHHHHHcCcEEEecCCCCc
Confidence 45667778889999999998887766 22233222222 22222 24568899999999999999988
No 20
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=41.20 E-value=39 Score=26.18 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCeeeeecC-------C----cCCCceEEEcCCChh--hH------HHHHHHHHHHHHHHHHHHcC
Q 021842 169 RDIVDSHYKACLYAGINISGING-------E----VMPGQWEFQVGPAVG--IS------AGDQLWVARYILERITEIAG 229 (307)
Q Consensus 169 ~~~l~~i~~~l~~~Gi~ve~~h~-------E----~gpGQ~Ei~l~~~~~--l~------aaD~~~~~k~~ik~vA~~~G 229 (307)
.+++.+|.+.|.++||+.+.-.. + .+.-|||+.+--.+. +- ..=+.+.||.++..|..+..
T Consensus 40 ~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l~gV~~kRi~Gd~~~yk~lc~~il~~L~ 119 (120)
T 3ose_A 40 NDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELK 119 (120)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTEEEEEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCceeEEEEecCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999998887431 1 123578887544321 11 12246689999999988765
Q ss_pred c
Q 021842 230 V 230 (307)
Q Consensus 230 l 230 (307)
|
T Consensus 120 L 120 (120)
T 3ose_A 120 L 120 (120)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=40.63 E-value=32 Score=28.64 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCeeeeecCCc------CCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEeccc
Q 021842 169 RDIVDSHYKACLYAGINISGINGEV------MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPK 237 (307)
Q Consensus 169 ~~~l~~i~~~l~~~Gi~ve~~h~E~------gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpK 237 (307)
..++.+|...|.+.|++|..++.-. +.+.|-+.+.-.-+ ...+ -.+|..+..+|.+.|+...|.|-
T Consensus 104 pGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~--~~l~~~l~~~a~~l~~di~~~~~ 175 (195)
T 2nyi_A 104 EGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY--QEVVTALSRVEEEFGVDIDLEEV 175 (195)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH--HHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc--HHHHHHHHHHHHHcCeEEEEEEC
Confidence 4689999999999999998876643 34677666655422 2223 56788888999999999999764
No 22
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=34.27 E-value=27 Score=35.77 Aligned_cols=96 Identities=15% Similarity=0.045 Sum_probs=62.2
Q ss_pred eecCCcCCCceEEEcCCC-hhhHHHHHHHHHHHHHHHHH-HHcCcEEEecc----c----CcCCCC--------------
Q 021842 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERIT-EIAGVVLSFDP----K----PIQGDW-------------- 243 (307)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA-~~~Gl~ATFmp----K----P~~gd~-------------- 243 (307)
.+.+|..-.|.|+...+. +.-++-+.+...+.++.+.+ ....+-+.=|| . |+. ++
T Consensus 53 ~i~td~ses~lE~iTpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lwp~smp~~l~~~~~ip~a-~~~~~~~~~Yr~~L~~ 131 (757)
T 3ln7_A 53 YIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSMPAGLPAEEQIRVA-QLDNPEDVAYREYLVK 131 (757)
T ss_dssp SEECSSSTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCTTEECCCSSSCSBCCC---CCCC-CCSSHHHHHHHHHHHH
T ss_pred CCCchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCcCCCCCCCCcc-ccCCCccHHHHHHHHH
Confidence 577799999999999996 57778888888888877765 33443333332 1 333 11
Q ss_pred -------CCceeeEEEeccCC--------CCC-CCH----H-HHHHHHHHHHHHHHHHHhHh
Q 021842 244 -------NGAGAHANYSTKSM--------RND-GGF----E-VIKKAIEKLGLRHSEHIAAY 284 (307)
Q Consensus 244 -------~GsG~H~H~SL~~g--------~n~-~gl----s-~~~~fiaGlL~h~~~~~a~~ 284 (307)
.=+|+|+|+|+-+. ..+ ... + .....+-+++.+.+-++++|
T Consensus 132 ryG~~~q~i~GiH~n~s~~~~~~~~l~~~~~~~~~~~~~~~~~Y~~l~r~~~r~~wll~yL~ 193 (757)
T 3ln7_A 132 IYGKNKQMVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNFLRYQWILLYLL 193 (757)
T ss_dssp HHCSHHHHCCCCEEEEEECHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhchhhceeeeEEEEEecChHHHHHHhhhcccchhHHHHHhHHHHHHHHhhHhHHHHHHHHh
Confidence 12799999999761 011 111 1 22345677788889999998
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=33.43 E-value=42 Score=27.57 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCeeeeecCCc--------CCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcCCC
Q 021842 171 IVDSHYKACLYAGINISGINGEV--------MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGD 242 (307)
Q Consensus 171 ~l~~i~~~l~~~Gi~ve~~h~E~--------gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~gd 242 (307)
++.+|.+.|.+.|++|+.+..-. +.+.|-+.+.-.-+ ...+.-.+|.-+.++|.+.|+...+.+--.. +
T Consensus 106 il~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~ 182 (192)
T 1u8s_A 106 LTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCTALDVQGSLNFIKNS-Q 182 (192)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHHHHTCEEEEEEEEC---
T ss_pred HHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHhCceEEEEEcccc-C
Q ss_pred CCCceeeEE
Q 021842 243 WNGAGAHAN 251 (307)
Q Consensus 243 ~~GsG~H~H 251 (307)
..+.--|-|
T Consensus 183 ~~~~~~~~~ 191 (192)
T 1u8s_A 183 EGGSHHHHH 191 (192)
T ss_dssp ---------
T ss_pred CCCcccccC
No 24
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=29.88 E-value=1.3e+02 Score=27.25 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcCCCCCCceeeEEEeccCCCCCCCHHHHHHHHHHHH
Q 021842 195 PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLG 274 (307)
Q Consensus 195 pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~gd~~GsG~H~H~SL~~g~n~~gls~~~~fiaGlL 274 (307)
|.+.-|+|.|.+++.-++ ++-+=..+|++-.+.||. +| ||- ..|.|+|+-+-|...- .-...+.|.-.|-
T Consensus 134 PD~lvfDLDP~~~~~f~~-v~~aA~~~r~~L~~lGL~-~f-~KT----SGgkGlHV~vPl~~~~---~~~~vr~fa~~~A 203 (303)
T 2iru_A 134 ATRLVFDLDPGEGVMMAQ-LAEVARAVRDLLADIGLV-TF-PVT----SGSKGLHLYTPLDEPV---SSRGATVLAKRVA 203 (303)
T ss_dssp EEEEEEEEEECTTCCHHH-HHHHHHHHHHHHHTTTCC-CE-EEE----CSSSCEEEEEEEEEEE---CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCc-cc-eEc----cCCCeEEEEEEcCCCC---CHHHHHHHHHHHH
Confidence 678889999998766555 344445589999999997 45 772 4579999999996521 1224566666666
Q ss_pred HHHHHHH
Q 021842 275 LRHSEHI 281 (307)
Q Consensus 275 ~h~~~~~ 281 (307)
.++....
T Consensus 204 ~~l~~~~ 210 (303)
T 2iru_A 204 QRLEQAM 210 (303)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 6655544
No 25
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=26.97 E-value=53 Score=21.76 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=18.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCc
Q 021842 99 GEPIPTNKRHAAAKIFSHSDVVAEE 123 (307)
Q Consensus 99 G~p~~~~PR~~L~~~~~~~~~~G~~ 123 (307)
|.|...||| +...+.++..+|++
T Consensus 1 ~~p~~~D~r--l~~al~qMl~MGF~ 23 (52)
T 1q02_A 1 GSPPEADPR--LIESLSQMLSMGFS 23 (52)
T ss_dssp CCCTTSCHH--HHHHHHHHHTTTCC
T ss_pred CCCCCcChH--HHHHHHHHHHcCCC
Confidence 567788999 77788888888987
No 26
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=22.86 E-value=56 Score=31.89 Aligned_cols=94 Identities=12% Similarity=-0.076 Sum_probs=58.8
Q ss_pred eecCCcCCCceEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCcE--EEecc-c-------CcCCCC-------------
Q 021842 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGVV--LSFDP-K-------PIQGDW------------- 243 (307)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~--ATFmp-K-------P~~gd~------------- 243 (307)
.+.+|..-.|.|+...+. +.-++.+.+-..+..+.+.+. |.. +.=|| . |+. +.
T Consensus 56 ~IttDfsEsqlE~iTpv~~s~~eal~~L~~l~~~v~~~l~--~e~Lwp~SmP~~l~~~~~IpiA-~yg~s~~g~~k~~Yr 132 (518)
T 1va6_A 56 WITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMG--DERMWPLSMPSYIAEGQDIELA-QYGTSNTGRFKTLYR 132 (518)
T ss_dssp SEEECSBTTEEEEECCCBSCHHHHHHHHHHHHHHHHTSST--TCEECCSSSCSSCCTTCCCCBC-CCCSSHHHHHHHHHH
T ss_pred CcCCCcchhheeecCCCCCCHHHHHHHHHHHHHHHHHHcC--CCeEeecCCCCCCCCCCCCccc-cccccccCccchHHH
Confidence 367788889999999986 566688888777777777762 332 11121 1 232 11
Q ss_pred ------------CCceeeEEEeccCC------CCCCCH------H-HHHHHHHHHHHHHHHHHhHh
Q 021842 244 ------------NGAGAHANYSTKSM------RNDGGF------E-VIKKAIEKLGLRHSEHIAAY 284 (307)
Q Consensus 244 ------------~GsG~H~H~SL~~g------~n~~gl------s-~~~~fiaGlL~h~~~~~a~~ 284 (307)
.=+|+|+|+|+-+. ....+- + .....+-.++.+.+=++++|
T Consensus 133 ~~L~~rYG~~~q~IsGiH~N~s~~d~l~~~l~~~~~~~~~~~~~~~~y~~lirn~~r~~wlL~yLf 198 (518)
T 1va6_A 133 EGLKNRYGALMQTISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLF 198 (518)
T ss_dssp HHHHHHHCHHHHTCCEEEEEEECCHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhCcchheeeeEEEEEecCHHHHHHHHhhccchhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 13899999999762 100111 1 23334447888888888888
No 27
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=21.71 E-value=2.2e+02 Score=20.15 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcCCCCCCcee
Q 021842 169 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGA 248 (307)
Q Consensus 169 ~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~gd~~GsG~ 248 (307)
...+++.++.+...|+..-.+-|-.|.| ..|..|++.-++|.....|-.-|.. ..|+|.
T Consensus 18 ~~~l~~fl~~a~~~g~~~v~IIHGkG~G-------------------vLr~~V~~~L~~~~~V~~f~~a~~~--~GG~Ga 76 (83)
T 2zqe_A 18 LLEVDQALEEARALGLSTLRLLHGKGTG-------------------ALRQAIREALRRDKRVESFADAPPG--EGGHGV 76 (83)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSTTS-------------------HHHHHHHHHHHHCTTEEEEEECCTT--TTGGGE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCch-------------------HHHHHHHHHHhcCCceeEEEEcCcc--cCCCEE
Confidence 4667777777788898877777777764 6899999999999999999876655 357775
No 28
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A
Probab=21.38 E-value=81 Score=31.33 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCeeeee-----cCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcC
Q 021842 170 DIVDSHYKACLYAGINISGI-----NGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240 (307)
Q Consensus 170 ~~l~~i~~~l~~~Gi~ve~~-----h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~ 240 (307)
+..++..+.|+++|++.-.. .||-.+|||.++.. ...|.. =+.|+++||.+-.-|=|+.
T Consensus 32 ~~W~d~l~kmKa~G~NtV~~yv~W~~hEP~~G~fdF~g~-----~dL~~f-------l~~a~~~Gl~VilrpGPYi 95 (595)
T 4e8d_A 32 EDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGD-----LDLEKF-------LQIAQDLGLYAIVRPSPFI 95 (595)
T ss_dssp GGHHHHHHHHHHTTCCEEEEECCHHHHCSBTTBCCCSGG-----GCHHHH-------HHHHHHTTCEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHcCCCCCeecccch-----hhHHHH-------HHHHHHcCCEEEEecCCce
Confidence 34555666779999999999 99999999987642 222222 2358899999999999975
Done!