BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021845
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS---------LYRNTLVHKIFPGQFFLAGRQG 144
P GR+ + L+ PIT NF+A+C+ Y + H+I P QF + G
Sbjct: 32 PAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP-QFMIQGGD- 89
Query: 145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
+R D GE F N FLL + G P+
Sbjct: 90 FTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAG------------------PNTN 131
Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
+F ITT P CP LD K++VFG VL+G++VV +I
Sbjct: 132 GSQFFITTVP--CPWLDGKHVVFGKVLEGMEVVKSI 165
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 90/207 (43%), Gaps = 51/207 (24%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
+GR+I GL+G P TV NF A+ + Y+N+ H++ F + G +R D
Sbjct: 29 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIK-DFMIQGGD-FTRGDGTG 86
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
G+ F N F LKH G VS+ + D + +F ITT
Sbjct: 87 GKSIYGERFPDEN--------FKLKHYGPGWVSMANAGKDTN----------GSQFFITT 128
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
LD K++VFG VL+G++VV + S T D R
Sbjct: 129 VK--TAWLDGKHVVFGKVLEGMEVVRKVESTKT------------------DSR------ 162
Query: 273 IWNRPLKTVYISDCGELKL-KPNATTK 298
++PLK V I+DCG++++ KP A K
Sbjct: 163 --DKPLKDVIIADCGKIEVEKPFAIAK 187
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 51/208 (24%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
+GR+I GL+G P TV NF A+ + Y+N+ H++ F + G +R D
Sbjct: 19 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIK-DFMIQGGD-FTRGDGTG 76
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
G+ F N F LKH G VS+ + D + +F ITT
Sbjct: 77 GKSIYGERFPDEN--------FKLKHYGPGWVSMANAGKDTNGS----------QFFITT 118
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
LD K++VFG VL+G++VV + S T D R
Sbjct: 119 VK--TAWLDGKHVVFGKVLEGMEVVRKVESTKT------------------DSR------ 152
Query: 273 IWNRPLKTVYISDCGELKL-KPNATTKP 299
++PLK V I+DCG++++ KP A K
Sbjct: 153 --DKPLKDVIIADCGKIEVEKPFAIAKE 178
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 30/150 (20%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPGQFFLAGRQGLSR 147
GR+I L+ + P T NF+A+C+ + Y+N++ H+I P QF G ++
Sbjct: 18 GRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP-QFMCQGGD-ITN 75
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
+ GE F N F +KH + G++S+ P+ + +
Sbjct: 76 GNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSM----------ANAGPNTNSSQ 117
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVV 237
FLIT P CP LD K++VFG V++G++VV
Sbjct: 118 FLITLVP--CPWLDGKHVVFGKVIEGMNVV 145
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 57/202 (28%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPGQFFLAGRQGLSR 147
GR+I L+ + P T NF+A+C+ + Y+N++ H+I P QF G ++
Sbjct: 18 GRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP-QFMCQGGD-ITN 75
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
+ GE F N F +KH + G++S+ P+ + +
Sbjct: 76 GNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSM----------ANAGPNTNSSQ 117
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRA 267
F IT P CP LD K++VFG V++G++VV ++K + ++
Sbjct: 118 FFITLVP--CPWLDGKHVVFGKVIEGMNVV------------REMEKEGAKSGYV----- 158
Query: 268 DTARAIWNRPLKTVYISDCGEL 289
++V I+DCGEL
Sbjct: 159 ----------KRSVVITDCGEL 170
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 51/208 (24%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
+GR++IGL+G P TV NF A+ + Y+++ H++ F + G +R D
Sbjct: 26 IGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIK-DFMIQGGD-FTRGDGTG 83
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
G+ F N F LKH G VS+ + D + +F ITT
Sbjct: 84 GKSIYGERFPDEN--------FKLKHYGPGWVSMANAGKDTN----------GSQFFITT 125
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
LD K++VFG VL+G++VV + + T D R
Sbjct: 126 VK--TAWLDGKHVVFGKVLEGMEVVRKVETTKT------------------DGR------ 159
Query: 273 IWNRPLKTVYISDCGELKL-KPNATTKP 299
++PLK V I+DCG++++ KP A K
Sbjct: 160 --DKPLKDVTIADCGKIEVEKPFAIAKE 185
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 51/208 (24%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
+GR++IGL+G P TV NF A+ + Y+++ H++ F + G +R D
Sbjct: 26 IGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIK-DFMIQGGD-FTRGDGTG 83
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
G+ F N F LKH G VS+ + D + +F ITT
Sbjct: 84 GKSIYGERFPDEN--------FKLKHYGPGWVSMANAGKDTN----------GSQFFITT 125
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARA 272
LD K++VFG VL+G++VV + + T D R
Sbjct: 126 VK--TAWLDGKHVVFGKVLEGMEVVRKVETTKT------------------DGR------ 159
Query: 273 IWNRPLKTVYISDCGELKL-KPNATTKP 299
++PLK V I+DCG++++ KP A K
Sbjct: 160 --DKPLKDVTIADCGKIEVEKPFAIAKE 185
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 25/154 (16%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ IGL+G AP+T NF+ +C+ Y++++ H++ Q F+ + D
Sbjct: 24 PLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVI--QNFMIQGGDFTNFDGT 81
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N + +KH G +L ++ P+ +F IT
Sbjct: 82 GGKSIYGEKFADENLN--------VKHFVG---ALSMA--------NAGPNTNGSQFFIT 122
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
T P P LD +++VFG VL G+DVV I T
Sbjct: 123 T--APTPWLDGRHVVFGKVLDGMDVVLRIEKTKT 154
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 51/198 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
P+GR++IGL+G+ P TV NFK + S + Y+ ++ H++ F + G + D
Sbjct: 18 PVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIR-NFMIQGGD-FTNFDGT 75
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N L+ F+ G VS+ P+ +F +T
Sbjct: 76 GGKSIYGTRFDDEN---LKIKHFV------GAVSMA----------NAGPNSNGSQFFVT 116
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T P P LD +++VFG V++G+DVV + + T
Sbjct: 117 TAP--TPWLDGRHVVFGKVVEGMDVVKKVENTKT-------------------------- 148
Query: 272 AIWNRPLKTVYISDCGEL 289
+ ++P K V I+DCG L
Sbjct: 149 GLNDKPKKAVKINDCGVL 166
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 25/154 (16%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ IGL+G AP+T NF+ +C+ Y++++ H++ Q F+ + D
Sbjct: 24 PLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVI--QNFMIQGGDFTNFDGT 81
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N + +KH G +L ++ P+ +F IT
Sbjct: 82 GGKSIYGEKFADENLN--------VKHFVG---ALSMA--------NAGPNTNGSQFFIT 122
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
T P P LD ++VFG VL G+DVV I T
Sbjct: 123 T--APTPWLDGAHVVFGKVLDGMDVVLRIEKTKT 154
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
P+GR++ LY + P T NF+A+C+ Y + H++ P F L G + +
Sbjct: 14 PIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIP-DFMLQGGD-FTAGNGT 71
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F H R G++S+ P+ +F IT
Sbjct: 72 GGKSIYGGKFPDEN--------FKKHHDRPGLLSMA----------NAGPNTNGSQFFIT 113
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
T P CP LD K++VFG V+ G D+V + S+ +
Sbjct: 114 TVP--CPWLDGKHVVFGEVVDGYDIVKKVESLGS 145
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 32/153 (20%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCS--SRSLYRNTLVHKIFPGQFFLAG----RQGLSRR 148
LGR+++ L + P T NF+ +C Y+ + H+I PG G G R
Sbjct: 41 LGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGR 100
Query: 149 DSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEF 208
S GE P +F LKH++ G++S+ H +F
Sbjct: 101 -SIYGEKFPDENFE-------------LKHTKEGILSMA----------NCGAHTNGSQF 136
Query: 209 LITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIA 241
IT G LD K++VFG V++G+DVV IA
Sbjct: 137 FITLGK--TQWLDEKHVVFGEVVEGMDVVHKIA 167
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 24/164 (14%)
Query: 88 LCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGL 145
+C+ PLGR+ + L+ ++ P T NF+A+C+ ++N++ H++ P F+ +
Sbjct: 13 VCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPD--FVCQGGDI 70
Query: 146 SRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
++ D G+ D F +KH+ G++S+ + N
Sbjct: 71 TKHDGTGGQ--------SIYGDKFEDENFDVKHTGPGLLSM----------ANQGQNTNN 112
Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249
+F+IT LD K++VFG V G+D V I S + K S
Sbjct: 113 SQFVITL--KKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGS 154
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
P GR++ LY P T NF+ + + + Y++++ H++ P QF L G +R +
Sbjct: 15 PEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIP-QFMLQGGD-FTRHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F +KH++ G++S+ + + + +F IT
Sbjct: 73 GGKSIYGEKFADEN--------FQVKHTKPGLLSMANAGANTNGS----------QFFIT 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
T P LD K++VFG V++GLD+V +
Sbjct: 115 TVP--TSWLDGKHVVFGEVIEGLDIVRKV 141
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
P GR++ LY P T NF+ + + + Y++++ H++ P QF L G +R +
Sbjct: 16 PEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIP-QFMLQGGD-FTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F +KH++ G++S+ + + + +F IT
Sbjct: 74 GGKSIYGEKFADEN--------FQVKHTKPGLLSMANAGANTNGS----------QFFIT 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
T P LD K++VFG V++GLD+V +
Sbjct: 116 TVP--TSWLDGKHVVFGEVIEGLDIVRKV 142
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + HKI PG F+ +R +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 15 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 73 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 115 TAK--TKWLDGKHVVFGAVKEGMNIVEAM---------ERFGSRN--------------- 148
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 149 ---GKTSKKITIADCGQLE 164
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 58/204 (28%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRS---------LYRNTLVHKIFPGQFFLAGRQGLS 146
GR+++ LY + P T NF+A+C+ + ++ + H+I P F + G +
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP-NFMIQGGD-FT 75
Query: 147 RRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNV 206
R + GE F N F KH+ GV+S+ P+
Sbjct: 76 RGNGTGGESIYGEKFPDEN--------FKEKHTGPGVLSM----------ANAGPNTNGS 117
Query: 207 EFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKR 266
+F + T LD K++VFG V++GLDVV A+ S +
Sbjct: 118 QFFLCTVK--TEWLDGKHVVFGRVVEGLDVVKAVESNGSQS------------------- 156
Query: 267 ADTARAIWNRPLKTVYISDCGELK 290
+P+K I+DCG+LK
Sbjct: 157 --------GKPVKDCMIADCGQLK 172
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSS--RSLYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
P+GR++IGL+G P T +NF + Y + H++ F + G +R D
Sbjct: 19 PIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIA-DFMIQGGD-FTRGDGT 76
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G F N F LKH G +S+ + D + +F IT
Sbjct: 77 GGRSIYGEKFADEN--------FKLKHYGAGWLSMANAGADTN----------GSQFFIT 118
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS---IPTYKPSERI 252
T P LD +++VFG +L+G+DVV I +P +P + +
Sbjct: 119 TVK--TPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDV 160
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 26/149 (17%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
+GR++IGL+G++ P TV NF A+ + Y+ ++ H++ F + G + RD
Sbjct: 21 VGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIK-DFMIQGGD-FTARDGTG 78
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT- 211
G + +T F LKH G VS+ P +F IT
Sbjct: 79 G--------MSIYGETFPDENFKLKHYGIGWVSMA----------NAGPDTNGSQFFITL 120
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
T P LD K++VFG VL G+ VV +I
Sbjct: 121 TKP---TWLDGKHVVFGKVLDGMTVVHSI 146
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 24 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 81
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 82 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 123
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 124 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 157
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 158 ---GKTSKKITIADCGQLE 173
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 15 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 73 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 115 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 148
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 149 ---GKTSKKITIADCGQLE 164
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 35 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 92
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 93 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 134
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 135 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 168
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 169 ---GKTSKKITIADCGQLE 184
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGEL 289
+ K + I+DCG+L
Sbjct: 150 ---GKTSKKITIADCGQL 164
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 58/209 (27%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
P+GR++ L+ + P T NF +CS Y+ + H++ F + G
Sbjct: 32 PVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVK-NFMIQGGD 90
Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
S + K GE F N F+LKH R ++S+ H
Sbjct: 91 -FSEGNGKGGESIYGGYFKDEN--------FILKHDRAFLLSM----------ANRGKHT 131
Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
+F ITT P P LD ++VFG V+ G +V+ I ++ T
Sbjct: 132 NGSQFFITTKPAP--HLDGVHVVFGLVISGFEVIEQIENLKT------------------ 171
Query: 264 DKRADTARAIWNRPLKTVYISDCGELKLK 292
D A +RP V + DCG L K
Sbjct: 172 ----DAA----SRPYADVRVIDCGVLATK 192
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 32/178 (17%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRS---------LYRNTLVHKIFPGQFFLAGRQGLS 146
GR+++ LY P T NF+A+C+ Y++++ H++ P F + G +
Sbjct: 22 GRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIP-NFMIQGGD-FT 79
Query: 147 RRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNV 206
R + GE T R +F K R + CLS + P+
Sbjct: 80 RGNGTGGE--------SIYGTTFRDESFSGKAGRHTGLG-CLSMANAGPNTN------GS 124
Query: 207 EFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSER----IQKYNELAA 260
+F I T P LD K++VFG V+ GLDVV + + + R + E+AA
Sbjct: 125 QFFICTAA--TPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVAA 180
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++++ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILTM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 88 LCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGL 145
+ + PLG + L+ + P T +NF+A+C+ Y + H++ P F L G
Sbjct: 8 ITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIP-DFMLQGGD-F 65
Query: 146 SRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
+ + G+ F N F LKH++ G++S+ P+
Sbjct: 66 TAGNGTGGKSIYGAKFADEN--------FQLKHNKPGLLSMA----------NAGPNTNG 107
Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS--IPTYKPSERIQ 253
+F ITT LD K++VFG V+ G++VV AI + + KP RI+
Sbjct: 108 SQFFITTVV--TSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIE 155
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+++ L + P T NF+A+C+ Y+ + H++ P F+ + +
Sbjct: 17 PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMCQAGDFTNHNGT 74
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F LKH GV+S+ P+ +F I
Sbjct: 75 GGKSIYGSRFPDEN--------FTLKHVGPGVLSM----------ANAGPNTNGSQFFIC 116
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V++G+DVV I S G K T+
Sbjct: 117 TIK--TDWLDGKHVVFGHVIEGMDVVKKIES-------------------FGSKSGRTS- 154
Query: 272 AIWNRPLKTVYISDCGEL 289
K + I+DCG+L
Sbjct: 155 -------KKIVITDCGQL 165
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+++ L + P T NF+A+C+ Y+ + H++ P F+ + +
Sbjct: 16 PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMCQAGDFTNHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F LKH GV+S+ P+ +F I
Sbjct: 74 GGKSIYGSRFPDEN--------FTLKHVGPGVLSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V++G+DVV I S G K T+
Sbjct: 116 TIK--TDWLDGKHVVFGHVIEGMDVVKKIES-------------------FGSKSGRTS- 153
Query: 272 AIWNRPLKTVYISDCGEL 289
K + I+DCG+L
Sbjct: 154 -------KKIVITDCGQL 164
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+++ L + P T NF+A+C+ Y+ + H++ P F+ + +
Sbjct: 15 PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMCQAGDFTNHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F LKH GV+S+ P+ +F I
Sbjct: 73 GGKSIYGSRFPDEN--------FTLKHVGPGVLSM----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V++G+DVV I S G K T+
Sbjct: 115 TIK--TDWLDGKHVVFGHVIEGMDVVKKIES-------------------FGSKSGRTS- 152
Query: 272 AIWNRPLKTVYISDCGEL 289
K + I+DCG+L
Sbjct: 153 -------KKIVITDCGQL 163
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 51/198 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+++ L + P T NF+A+C+ Y+ + H++ P F+ + +
Sbjct: 16 PLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS--FMCQAGDFTNHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F LKH GV+S+ P+ +F I
Sbjct: 74 GGKSIYGSRFPDEN--------FTLKHVGPGVLSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V++G+DVV I S G K T+
Sbjct: 116 TIK--TDWLDGKHVVFGHVIEGMDVVKKIES-------------------FGSKSGRTS- 153
Query: 272 AIWNRPLKTVYISDCGEL 289
K + I+DCG+L
Sbjct: 154 -------KKIVITDCGQL 164
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSKLG 153
GR+++ L + P T NF+A+C+ Y N H++ P QF G + D G
Sbjct: 25 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIP-QFMCQGGD-FVKGDGTGG 82
Query: 154 ELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG 213
+ F N F L+H GV+S+ S P+ +F I T
Sbjct: 83 KSIYGRKFDDEN--------FQLRHEGFGVLSMANS----------GPNTNGSQFFICTT 124
Query: 214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
C LD K++VFG V+ G +VV + S+ +
Sbjct: 125 K--CDWLDGKHVVFGRVVDGQNVVKKMESVGS 154
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ + +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGNFTHHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 58/204 (28%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQGL 145
GR+++ LY +AP T +NF +C+ + Y+ + H++ F + G
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIK-NFMIQGGD-F 78
Query: 146 SRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRN 205
++ D GE F++KH VVS+ P+
Sbjct: 79 TKGDGTGGE--------SIYGGMFDDEEFVMKHDEPFVVSMA----------NKGPNTNG 120
Query: 206 VEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDK 265
+F ITT P P L+N ++VFG V+ G +VV I + T
Sbjct: 121 SQFFITTTP--APHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK----------------- 161
Query: 266 RADTARAIWNRPLKTVYISDCGEL 289
NRPL V I +CGEL
Sbjct: 162 ---------NRPLADVVILNCGEL 176
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD ++VFG V +G+++V A+ ER N
Sbjct: 116 T--AKTEWLDGXHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD ++VFG V +G+++V A+ ER N
Sbjct: 116 T--AKTKWLDGXHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ +R +
Sbjct: 20 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTRHNGT 77
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 78 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 119
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD ++VFG V +G+++V A+ ER N
Sbjct: 120 T--AKTKWLDGXHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 153
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 154 ---GKTSKKITIADCGQLE 169
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ + +
Sbjct: 16 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGNFTHCNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 74 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G+++V A+ ER N
Sbjct: 116 TAK--TEWLDGKHVVFGKVKEGMNIVEAM---------ERFGSRN--------------- 149
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 150 ---GKTSKKITIADCGQLE 165
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 59/206 (28%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQG 144
+GR+++ L+ + P T NF+A+C+ ++ H+I +F + G
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIK-KFMIQGGD- 86
Query: 145 LSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYR 204
S ++ GE F N F KH + G++S+ + ++ +
Sbjct: 87 FSNQNGTGGESIYGEKFEDEN--------FHYKHDKEGLLSMANAGSNTN---------- 128
Query: 205 NVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGD 264
+F ITT P P LD K++VFG V++G+ V + ++
Sbjct: 129 GSQFFITTVP--TPHLDGKHVVFGQVIKGMGVAKILENVEVKG----------------- 169
Query: 265 KRADTARAIWNRPLKTVYISDCGELK 290
+P K I++CGELK
Sbjct: 170 ----------EKPAKLCVIAECGELK 185
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 26/163 (15%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F+ + +
Sbjct: 15 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FMCQGGDFTHHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ P+ +F I
Sbjct: 73 GGKSIYGEKFEDEN--------FILKHTGPGILSM----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERI 252
T LD K++VFG V +G+++V A+ + K S++I
Sbjct: 115 TAK--TEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKI 155
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 51/199 (25%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSL--YRNTLVHKIFPGQFFLAGRQGLSRRDSK 151
PLGR+ L+ P T NF+A+ + Y+ + H+I PG F +R +
Sbjct: 15 PLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPG--FXCQGGDFTRHNGT 72
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S P+ +F I
Sbjct: 73 GGKSIYGEKFEDEN--------FILKHTGPGILSX----------ANAGPNTNGSQFFIC 114
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTAR 271
T LD K++VFG V +G ++V A ER N
Sbjct: 115 TAK--TEWLDGKHVVFGKVKEGXNIVEA---------XERFGSRN--------------- 148
Query: 272 AIWNRPLKTVYISDCGELK 290
+ K + I+DCG+L+
Sbjct: 149 ---GKTSKKITIADCGQLE 164
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRS--LYRNTLVHKIFPGQFFLAGRQGLSRRDSKL 152
+GR++IGL+G + P TV NF A+ + Y+ + H++ F + G ++ D
Sbjct: 29 VGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIK-DFMIQGGD-ITTGDGTG 86
Query: 153 GELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT- 211
G + +T F LKH G VS+ P +F IT
Sbjct: 87 G--------VSIYGETFPDENFKLKHYGIGWVSMA----------NAGPDTNGSQFFITL 128
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAI 240
T P LD K++VFG V+ G+ VV +I
Sbjct: 129 TKP---TWLDGKHVVFGKVIDGMTVVHSI 154
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 58/206 (28%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
P GR++ L+ + P T NF+ +C+ Y++ L H++ F+
Sbjct: 22 PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKD--FMVQGG 79
Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
S + + GE +F +KH++ ++S+ D +
Sbjct: 80 DFSEGNGRGGE--------SIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS------- 124
Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
+F ITT P P LD ++VFG V+ G +VV I
Sbjct: 125 ---QFFITTKP--TPHLDGHHVVFGQVISGQEVVREIE---------------------- 157
Query: 264 DKRADTARAIWNRPLKTVYISDCGEL 289
+++ D A ++P V I CGEL
Sbjct: 158 NQKTDAA----SKPFAEVRILSCGEL 179
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 29/158 (18%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSL-------YRNTLVHKIFPGQFFLAGRQGLSR 147
+GR+ I L+ + P T NF+ C+ Y+ + H++ F + G ++
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK-DFMIQGGDFVNG 82
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
+ + + + P D F L+HS G++S+ S P +
Sbjct: 83 DGTGVASI-----YRGPFAD----ENFKLRHSAPGLLSMANS----------GPSTNGCQ 123
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
F IT C LD K++VFG ++ GL V+ I ++PT
Sbjct: 124 FFITCSK--CDWLDGKHVVFGKIIDGLLVMRKIENVPT 159
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 58/206 (28%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
P GR++ L+ + P T NF+ +C+ Y++ L H++ F+
Sbjct: 22 PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKD--FMVQGG 79
Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
S + + GE +F +KH++ ++S+ D +
Sbjct: 80 DFSEGNGRGGE--------SIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS------- 124
Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
+F ITT P P LD ++VFG V+ G +VV I
Sbjct: 125 ---QFFITTKP--TPHLDGHHVVFGQVISGQEVVREIE---------------------- 157
Query: 264 DKRADTARAIWNRPLKTVYISDCGEL 289
+++ D A ++P V I CGEL
Sbjct: 158 NQKTDAA----SKPFAEVRILSCGEL 179
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSLY--RNTLVHKIFPGQFFLAGRQGLSRRDSK 151
P GR+ + L + P+T NF+ +C+ + + + H+I P QF G + +
Sbjct: 24 PAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIP-QFMCQGGD-FTNHNGT 81
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ S P+ +F +T
Sbjct: 82 GGKSIYGKKFDDEN--------FILKHTGPGLLSMANS----------GPNTNGSQFFLT 123
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERI 252
LD K++VFG V +GLDV+ I + + KP +++
Sbjct: 124 CDK--TDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKV 164
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSLY--RNTLVHKIFPGQFFLAGRQGLSRRDSK 151
P GR+ + L + P+T NF+ +C+ + + + H+I P QF G + +
Sbjct: 16 PAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIP-QFMCQGGD-FTNHNGT 73
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S+ S P+ +F +T
Sbjct: 74 GGKSIYGKKFDDEN--------FILKHTGPGLLSMANS----------GPNTNGSQFFLT 115
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERI 252
LD K++VFG V +GLDV+ I + + KP +++
Sbjct: 116 CDK--TDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKV 156
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 58/206 (28%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRS----------LYRNTLVHKIFPGQFFLAGRQ 143
P GR++ L+ + P T NF+ +C+ Y++ L H++ F + G
Sbjct: 39 PAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVK-DFMVQGGD 97
Query: 144 GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHY 203
S + + GE +F +KH+ ++S+ D +
Sbjct: 98 -FSEGNGRGGE--------SIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGS------- 141
Query: 204 RNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIG 263
+F ITT P P LD ++VFG V+ G +VV I
Sbjct: 142 ---QFFITTKP--TPHLDGHHVVFGQVISGQEVVREIE---------------------- 174
Query: 264 DKRADTARAIWNRPLKTVYISDCGEL 289
+++ D A ++P V I CGEL
Sbjct: 175 NQKTDAA----SKPFAEVRILSCGEL 196
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 35/167 (20%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSL-------YRNTLVHKIFPGQFFLAGRQGLSR 147
LG+ L+ ++ P T NF+ C+ Y+NT+ H++ +F + G ++
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIK-EFMIQGGDFINH 131
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
S ++ + F +KH + G++S+ S P+ +
Sbjct: 132 NGSGSLSIYG---------EKFDDENFDIKHDKEGLLSMANS----------GPNTNGCQ 172
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQG-----LDVVAAIASIP-TYKP 248
F ITT C LD KN+VFG ++ L + ++ P YKP
Sbjct: 173 FFITTKK--CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKP 217
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 73 SLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCS--SRSLYRNTLVH 130
S+ FF E + ++ +GR++ L+ P T NF+ +C + YR + H
Sbjct: 1 SMSQVFFDVE--YAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFH 58
Query: 131 KIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSE 190
+I P F + G +R + G F N F KH + G++S+
Sbjct: 59 RIIP-NFMIQGGD-FTRGNGTGGRSIYGDKFADEN--------FSRKHDKKGILSMA--- 105
Query: 191 NDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL--QGLDVVAAIASIPTYKP 248
P+ +F ITT LD K++VFG V + VV I ++ +
Sbjct: 106 -------NAGPNTNGSQFFITT--AVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSG 156
Query: 249 SER 251
S R
Sbjct: 157 SVR 159
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 78 FFRPEG-TDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQ 136
+++ +G T+ + LG + LY + +P T NF +C Y NT+ H++ P
Sbjct: 29 YYKMKGHTERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCE-MGFYDNTIFHRVIPNF 87
Query: 137 FFLAGRQGLSRRDSK--LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDD 194
G + + K GE D + LKH+ G++S+ S N
Sbjct: 88 VIQGGDPTGTGKGGKSIYGEYFE---------DEINKE---LKHTGAGILSM--SNNG-- 131
Query: 195 PDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
P+ + +F IT P P LD K+ +F V + + + IAS+ T
Sbjct: 132 ------PNTNSSQFFITLAP--LPHLDGKHTIFARVSKNMTCIENIASVQT 174
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 94 PLGRLIIGLYGHLAPITVSNFKAMCSSRSLY--RNTLVHKIFPGQFFLAGRQGLSRRDSK 151
P GR+ L + P T NF+ +C+ + + + H+I P QF G + +
Sbjct: 25 PAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIP-QFXCQGGD-FTNHNGT 82
Query: 152 LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLIT 211
G+ F N F+LKH+ G++S S P+ +F +T
Sbjct: 83 GGKSIYGKKFDDEN--------FILKHTGPGLLSXANS----------GPNTNGSQFFLT 124
Query: 212 TGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTY--KPSERI 252
LD K++VFG V +GLDV+ I + + KP +++
Sbjct: 125 CDK--TDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKV 165
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 41/165 (24%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFL-------AGRQGLSR 147
+G + I ++ P T NF A+C+S + Y + H+ G F + GR G S
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCAS-NYYNGCIFHRNIKG-FMVQTGDPTGTGRGGNSI 66
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
K + + LKH+ GVVS+ + P+ +
Sbjct: 67 WGKKFEDEYSEY----------------LKHNVRGVVSMANN----------GPNTNGSQ 100
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP----TYKP 248
F IT G P LD K VFG V+ GL+ + + +P TY+P
Sbjct: 101 FFITYGKQP--HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRP 143
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 41/165 (24%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFL-------AGRQGLSR 147
+G + I ++ P T NF A+C+S + Y + H+ G F + GR G S
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCAS-NYYNGCIFHRNIKG-FMVQTGDPTGTGRGGNSI 72
Query: 148 RDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVE 207
K + + LKH+ GVVS+ + P+ +
Sbjct: 73 WGKKFEDEYSEY----------------LKHNVRGVVSMANN----------GPNTNGSQ 106
Query: 208 FLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP----TYKP 248
F IT G P LD K VFG V+ GL+ + + +P TY+P
Sbjct: 107 FFITYGKQP--HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRP 149
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 27/162 (16%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
G L + L+ L P T NF +C + Y T+ H+ F + G
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLCK-KHYYDGTIFHRSIR-NFVIQGGDPTGTGTGGESYW 86
Query: 156 HPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215
P D RPN L H+ G++S+ S P+ +F IT
Sbjct: 87 GKPF------KDEFRPN---LSHTGRGILSMANS----------GPNSNRSQFFITFRS- 126
Query: 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIP----TYKPSERIQ 253
C LD K+ +FG V+ G DV+ A+ ++ T +P E I+
Sbjct: 127 -CAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIR 167
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 81 PEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA 140
P+ P +G +++ LY AP T NF A + R Y T H+I F +
Sbjct: 6 PDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNF-AELARRGYYNGTKFHRIIK-DFMIQ 63
Query: 141 GRQ--GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVK 198
G G R + + + D L P+ LK + G++++
Sbjct: 64 GGDPTGTGRGGASI--------YGKQFEDELHPD---LKFTGAGILAMA----------N 102
Query: 199 LDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
P +F +T P LD K+ +FG V QG+ +V + + T
Sbjct: 103 AGPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVET 147
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 81 PEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA 140
P+ P +G +++ LY AP T NF A + R Y T H+I F +
Sbjct: 6 PDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNF-AELARRGYYNGTKFHRIIK-DFMIQ 63
Query: 141 GRQ--GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVK 198
G G R + + + D L P+ LK + G++++
Sbjct: 64 GGDPTGTGRGGASI--------YGKQFEDELHPD---LKFTGAGILAMA----------N 102
Query: 199 LDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
P +F +T P LD K+ +FG V QG+ +V + + T
Sbjct: 103 AGPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVET 147
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 81 PEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLA 140
P+ P +G +++ LY AP T NF A + R Y T H+I F +
Sbjct: 6 PDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNF-AELARRGYYNGTKFHRIIK-DFMIQ 63
Query: 141 GRQ--GLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVK 198
G G R + + + D L P+ LK + G++++
Sbjct: 64 GGDPTGTGRGGASI--------YGKQFEDELHPD---LKFTGAGILAMA----------N 102
Query: 199 LDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
P +F +T P LD K+ +FG V QG+ +V + + T
Sbjct: 103 AGPDTNGSQFFVTLAP--TQWLDGKHTIFGRVCQGIGMVNRVGMVET 147
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
G + + L AP++V NF +S Y NT H++ PG F + G + K +
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNS-GFYNNTTFHRVIPG-FMIQGGGFTEQMQQK--KP 69
Query: 156 HPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215
+PP+ N L+++RG +++ + + D + + + FL
Sbjct: 70 NPPIKNEADNG---------LRNTRG-TIAMARTADKDSATSQFFINVADNAFL------ 113
Query: 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTY 246
Q D VFG V++G+DV I+ +PT+
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTH 144
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
G + + L AP++V NF +S Y NT H++ PG F + G + K +
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNS-GFYNNTTFHRVIPG-FMIQGGGFTEQMQQK--KP 69
Query: 156 HPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215
+PP+ N L+++RG +++ + + D + + + FL
Sbjct: 70 NPPIKNEADNG---------LRNTRG-TIAMARTADKDSATSQFFINVADNAFL------ 113
Query: 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTY 246
Q D VFG V++G+DV I+ +PT+
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTH 144
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGE 154
+G + I L+ TV NF ++ S Y N + H++ + F+ + G D GE
Sbjct: 14 MGDIHISLFYKECKKTVQNF-SVHSINGYYNNCIFHRVI--KHFMV-QTGDPSGDGTGGE 69
Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
+F D L HS+ +VS+ P+ +F ITT P
Sbjct: 70 SIWGNEFEDEFFDHLN-------HSKPFMVSM----------ANCGPNTNGSQFFITTVP 112
Query: 215 GPCPQLDNKNIVFGTVLQGLDVVAAIASIPT---YKPSERIQKYN 256
CP LD K+ VFG V QG +V I + T KP E I+ N
Sbjct: 113 --CPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
G L I L+ +AP +F +C+ + + +T+ H+ GR L R+ SK E+
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVK-YFDDTIFHRCIRNFMIQGGRAEL-RQPSKKKEV 73
Query: 156 HPP---LDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITT 212
+ P L H GV+S+ ND H EF IT
Sbjct: 74 QQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMA---NDG-------KHSNLSEFFITF 123
Query: 213 GPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPT 245
C L+NK+ +FG V+ GLDV+ + T
Sbjct: 124 KS--CEHLNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 22/160 (13%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGEL 155
G L L+ P NF A+ S+ Y+NT+ HK G F + G G K GE
Sbjct: 26 GDLKFELFCSQCPKACKNFLAL-SASGYYKNTIFHKNIKG-FIIQG--GDPTGTGKGGES 81
Query: 156 HPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215
F D + P LK+ R G++S+ P+ +F IT
Sbjct: 82 IYGRYF----DDEIYPE---LKYDRRGILSMA------SKGASKKPNTNGSQFFITYSS- 127
Query: 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIP---TYKPSERI 252
PQL+ + ++FG ++ G + + + + P ++KP + I
Sbjct: 128 -LPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEI 166
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 207 EFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASI----PTYKPSERIQKYN 256
+F IT P P LDNK+ VFG V +G++VV I+++ T KP E + N
Sbjct: 121 QFFITVVP--TPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 49/170 (28%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCS--------------SRSLYRNTLVHKIFPGQFFLAG 141
G + I L+G+ AP TV+NF + S Y + H++ G G
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 142 RQGLSRRDSK----LGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDV 197
+ R E HP L F P +LL + G
Sbjct: 93 DPTGTGRGGPGYKFADEFHPELQFDKP---------YLLAMANAG--------------- 128
Query: 198 KLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL--QGLDVVAAIASIPT 245
P +F IT G P L+ ++ +FG V+ + VV AI+ T
Sbjct: 129 ---PGTNGSQFFITV--GKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT 173
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGR-QGLSRRDSKLGE 154
G + I L+ AP NF +C + Y NT+ H++ PG G G +
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLCLE-AYYDNTIFHRVVPGFIVQGGDPTGTGSGGESI-- 90
Query: 155 LHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP 214
+ P D L+ +R G+V++ + + D+ +F T
Sbjct: 91 ------YGAPFKDEFHSR---LRFNRRGLVAMANAGSHDN----------GSQFFFTL-- 129
Query: 215 GPCPQLDNKNIVFGTV 230
G +L+NK+ +FG V
Sbjct: 130 GRADELNNKHTIFGKV 145
>pdb|2J7A|C Chain C, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|F Chain F, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|I Chain I, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|L Chain L, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|O Chain O, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|R Chain R, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2VR0|C Chain C, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|F Chain F, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
Length = 159
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 114 FKAMCSSRSLYRNTLVHKIFPGQFFLAGRQ 143
FKA+ +R +Y NTL H PG LAG +
Sbjct: 81 FKAIAGARDVYMNTLGH---PGDLILAGME 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,029,654
Number of Sequences: 62578
Number of extensions: 329735
Number of successful extensions: 614
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 82
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)