Query 021845
Match_columns 306
No_of_seqs 272 out of 1965
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880 Peptidyl-prolyl cis-tr 100.0 6.4E-55 1.4E-59 378.4 17.2 172 57-292 31-205 (217)
2 KOG0546 HSP90 co-chaperone CPR 100.0 4.5E-55 9.8E-60 409.6 14.4 165 64-292 7-181 (372)
3 KOG0879 U-snRNP-associated cyc 100.0 6.7E-49 1.4E-53 322.5 12.6 163 63-289 8-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 2.3E-45 5E-50 335.4 20.8 163 61-291 48-221 (249)
5 PLN03149 peptidyl-prolyl isome 100.0 6.3E-45 1.4E-49 321.4 20.0 160 65-289 18-186 (186)
6 PTZ00060 cyclophilin; Provisio 100.0 1.3E-44 2.7E-49 318.7 20.5 162 64-290 14-183 (183)
7 cd01926 cyclophilin_ABH_like c 100.0 2.5E-44 5.5E-49 311.6 19.0 157 66-287 1-164 (164)
8 COG0652 PpiB Peptidyl-prolyl c 100.0 2.1E-44 4.6E-49 308.5 16.7 153 90-289 3-157 (158)
9 KOG0111 Cyclophilin-type pepti 100.0 2.9E-45 6.4E-50 322.9 10.8 164 62-290 133-298 (298)
10 cd01923 cyclophilin_RING cyclo 100.0 1.1E-43 2.4E-48 306.3 17.7 152 91-292 4-156 (159)
11 KOG0881 Cyclophilin type pepti 100.0 1E-44 2.3E-49 294.6 10.1 148 92-289 15-163 (164)
12 cd01921 cyclophilin_RRM cyclop 100.0 2.5E-43 5.4E-48 306.0 19.3 160 91-292 2-162 (166)
13 cd01927 cyclophilin_WD40 cyclo 100.0 7.3E-43 1.6E-47 297.8 17.0 145 91-285 2-147 (148)
14 cd01928 Cyclophilin_PPIL3_like 100.0 1E-42 2.2E-47 298.5 17.5 147 91-287 5-152 (153)
15 PRK10903 peptidyl-prolyl cis-t 100.0 2E-41 4.3E-46 299.9 21.2 151 92-289 34-189 (190)
16 cd01922 cyclophilin_SpCYP2_lik 100.0 5.3E-42 1.1E-46 291.9 16.6 144 91-285 2-146 (146)
17 cd01925 cyclophilin_CeCYP16-li 100.0 8.3E-41 1.8E-45 291.5 17.2 152 91-292 10-163 (171)
18 KOG0882 Cyclophilin-related pe 100.0 1E-41 2.2E-46 325.6 11.3 153 86-288 404-557 (558)
19 KOG0883 Cyclophilin type, U bo 100.0 2.6E-41 5.7E-46 317.5 11.1 157 86-292 277-434 (518)
20 PRK10791 peptidyl-prolyl cis-t 100.0 1.3E-39 2.9E-44 282.1 16.3 151 91-289 4-163 (164)
21 cd01920 cyclophilin_EcCYP_like 100.0 8.9E-39 1.9E-43 274.6 16.8 147 92-285 3-154 (155)
22 KOG0884 Similar to cyclophilin 100.0 7.2E-39 1.6E-43 259.2 11.0 152 91-291 5-157 (161)
23 KOG0865 Cyclophilin type pepti 100.0 5.6E-38 1.2E-42 270.9 10.3 161 64-289 2-167 (167)
24 PF00160 Pro_isomerase: Cyclop 100.0 1.6E-36 3.4E-41 259.1 16.3 145 95-288 9-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 2.6E-36 5.6E-41 255.5 16.6 143 92-285 3-146 (146)
26 cd01924 cyclophilin_TLP40_like 100.0 2E-35 4.4E-40 258.7 14.4 139 92-242 3-164 (176)
27 KOG0415 Predicted peptidyl pro 100.0 6.3E-35 1.4E-39 271.9 13.3 162 91-294 5-167 (479)
28 KOG0885 Peptidyl-prolyl cis-tr 100.0 5.5E-35 1.2E-39 273.9 11.0 165 82-296 8-174 (439)
29 KOG0882 Cyclophilin-related pe 97.4 0.00015 3.4E-09 71.1 4.5 159 86-290 98-263 (558)
30 TIGR03268 methan_mark_3 putati 95.5 0.074 1.6E-06 53.4 9.0 103 96-242 201-303 (503)
31 PRK00969 hypothetical protein; 95.4 0.078 1.7E-06 53.3 8.8 103 96-242 204-306 (508)
32 TIGR03268 methan_mark_3 putati 95.0 0.15 3.3E-06 51.2 9.6 47 96-142 375-422 (503)
33 COG4070 Predicted peptidyl-pro 94.7 0.1 2.2E-06 51.0 7.2 101 96-242 203-305 (512)
34 PRK00969 hypothetical protein; 91.9 1.1 2.4E-05 45.3 9.6 113 92-243 56-168 (508)
35 COG4070 Predicted peptidyl-pro 91.8 0.87 1.9E-05 44.7 8.4 48 96-143 376-426 (512)
36 PF12903 DUF3830: Protein of u 86.3 3.7 7.9E-05 35.2 7.4 43 96-142 8-52 (147)
37 PF04126 Cyclophil_like: Cyclo 21.8 91 0.002 25.4 2.8 47 181-242 62-113 (120)
No 1
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-55 Score=378.38 Aligned_cols=172 Identities=34% Similarity=0.643 Sum_probs=162.5
Q ss_pred CCCCCCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc---CccccCceeEeec
Q 021845 57 APTPDTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS---RSLYRNTLVHKIF 133 (306)
Q Consensus 57 ~~~~~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~---~~~Y~gt~FhRVi 133 (306)
...+.+++|++|||||++ ++...|||+|+||++.+|+||+||++||++ +..|.|++||||+
T Consensus 31 ~~~~~p~vT~kV~fdi~~----------------g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi 94 (217)
T KOG0880|consen 31 KYEPGPKVTHKVYFDIEI----------------GGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVI 94 (217)
T ss_pred ccCCCCcceeEEEEEEEE----------------CCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeee
Confidence 346778999999999999 789999999999999999999999999993 5789999999999
Q ss_pred CCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcC
Q 021845 134 PGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG 213 (306)
Q Consensus 134 ~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~ 213 (306)
|||||||||. +.++|++|.++| |++|+||||.|+|++||.|||||. |||+||||||||+.
T Consensus 95 ~nfmIQGGd~--t~g~gtGg~SIy--------G~~F~DENf~LkH~rpG~lSMAn~----------GpDtNGsQFfItT~ 154 (217)
T KOG0880|consen 95 PNFMIQGGDF--TKGDGTGGKSIY--------GEKFPDENFKLKHDRPGRLSMANA----------GPDTNGSQFFITTV 154 (217)
T ss_pred cCceeecCcc--ccCCCCCCeEee--------cCCCCCccceeecCCCceEeeecc----------CCCCCCceEEEEec
Confidence 9999999996 789999999998 688999999999999999999998 89999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845 214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK 292 (306)
Q Consensus 214 ~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~ 292 (306)
. ++||||+|+|||+|++|||||.+|+.++||. .++|+++|+|.+||+|+.+
T Consensus 155 ~--t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~--------------------------~dkP~e~v~I~~~g~l~~~ 205 (217)
T KOG0880|consen 155 K--TPWLDGKHVVFGQVLEGMDVVRKIENVKTDE--------------------------RDKPLEDVVIANCGELPVE 205 (217)
T ss_pred C--CccccCceeEEeeehhhHHHHHHHHhcccCC--------------------------CCCccccEEEeecCccccc
Confidence 8 9999999999999999999999999999985 6999999999999999884
No 2
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-55 Score=409.59 Aligned_cols=165 Identities=33% Similarity=0.593 Sum_probs=156.8
Q ss_pred CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc----------CccccCceeEeec
Q 021845 64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS----------RSLYRNTLVHKIF 133 (306)
Q Consensus 64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~----------~~~Y~gt~FhRVi 133 (306)
.+++|||||+| ++.+.||||||||.|.||+||+||+.||++ ...|+|+.|||||
T Consensus 7 ~~pr~ffDISI----------------~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRVi 70 (372)
T KOG0546|consen 7 TNPRVFFDISI----------------GGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVI 70 (372)
T ss_pred CCceEEEEEEe----------------CCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheee
Confidence 37899999999 899999999999999999999999999996 2489999999999
Q ss_pred CCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcC
Q 021845 134 PGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTG 213 (306)
Q Consensus 134 ~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~ 213 (306)
++|||||||. +.++|+||+||| |..|+||+|.++|+++++|||||. ||||||||||||+.
T Consensus 71 K~FMiQgGDf--s~gnGtGGeSIY--------G~~FdDEnF~lKHdrpflLSMAN~----------GpNTNgSQFFITT~ 130 (372)
T KOG0546|consen 71 KNFMIQGGDF--SEGNGTGGESIY--------GEKFDDENFELKHDRPFLLSMANR----------GPNTNGSQFFITTV 130 (372)
T ss_pred ecceeecccc--ccCCCCCccccc--------ccccccccceeccCcchhhhhhcC----------CCCCCCcceEEeCC
Confidence 9999999996 799999999998 678999999999999999999998 89999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845 214 PGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK 292 (306)
Q Consensus 214 ~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~ 292 (306)
+ +|||||+|+|||+||+|++||+.|+.+.|+. .++|..+|+|.+||+|..+
T Consensus 131 p--~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~--------------------------~skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 131 P--TPHLDGKHVVFGQVIKGKEVVREIENLETDE--------------------------ESKPLADVVISDCGELVKK 181 (372)
T ss_pred C--CCCcCCceeEEeeEeechhHHHHHhcccccc--------------------------CCCCccceEeccccccccc
Confidence 8 9999999999999999999999999999985 4699999999999999986
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-49 Score=322.54 Aligned_cols=163 Identities=30% Similarity=0.532 Sum_probs=153.1
Q ss_pred CCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-------CccccCceeEeecCC
Q 021845 63 TITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-------RSLYRNTLVHKIFPG 135 (306)
Q Consensus 63 ~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-------~~~Y~gt~FhRVi~~ 135 (306)
+.++.||||+++ ++..+|||+||||.+.+|+|++||+++|++ +..|++++|||||++
T Consensus 8 ~~nPvVF~dv~i----------------gg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkd 71 (177)
T KOG0879|consen 8 PNNPVVFFDVAI----------------GGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKD 71 (177)
T ss_pred CCCCeEEEEEee----------------CCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhh
Confidence 348899999999 899999999999999999999999999997 467999999999999
Q ss_pred eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC
Q 021845 136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215 (306)
Q Consensus 136 f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~ 215 (306)
|||||||. -.++|++-.+|| +.+|+||+|.++|+.||+|||||+ ++++||+|||||..+
T Consensus 72 FMiQgGDF--v~gDGtG~~sIy--------~~~F~DENFtlkH~~PGlLSMANs----------G~~tNGCQFFITcak- 130 (177)
T KOG0879|consen 72 FMIQGGDF--VNGDGTGVASIY--------GSTFPDENFTLKHDGPGLLSMANS----------GKDTNGCQFFITCAK- 130 (177)
T ss_pred heeccCce--ecCCCceEEEEc--------CCCCCCcceeeecCCCceeecccc----------CCCCCCceEEEEecc-
Confidence 99999995 688998888887 568999999999999999999998 899999999999998
Q ss_pred CCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289 (306)
Q Consensus 216 ~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l 289 (306)
+.|||++|+|||||++||.+++||+.+++.. +++|+-+|.|+.||++
T Consensus 131 -cdfLD~KHVVFGrvldGlli~rkIEnvp~G~--------------------------NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 131 -CDFLDGKHVVFGRVLDGLLIMRKIENVPTGP--------------------------NNKPKLPVVIVQCGEM 177 (177)
T ss_pred -cccccCceEEEeeeehhhhhhhhhhcCCCCC--------------------------CCCCCCcEEEeecccC
Confidence 9999999999999999999999999999974 6999999999999974
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.3e-45 Score=335.41 Aligned_cols=163 Identities=28% Similarity=0.486 Sum_probs=145.3
Q ss_pred CCCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccC----------ccccCceeE
Q 021845 61 DTTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSR----------SLYRNTLVH 130 (306)
Q Consensus 61 ~~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~----------~~Y~gt~Fh 130 (306)
....+++||||+++ ++...|||+||||.+.||+||+||++||++. .+|+|+.||
T Consensus 48 ~~~~~~rVfldisi----------------g~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~Fh 111 (249)
T PTZ00221 48 EEQNSCRAFLDISI----------------GDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVH 111 (249)
T ss_pred cCCCCCEEEEEEee----------------CCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEE
Confidence 44678999999999 7889999999999999999999999999851 249999999
Q ss_pred eecCC-eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEE
Q 021845 131 KIFPG-QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFL 209 (306)
Q Consensus 131 RVi~~-f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFf 209 (306)
||+++ |+||+||+. . .|.+++ |..|.||++.++|+++|+|+|++. ++|++|||||
T Consensus 112 RVi~~~f~iqgGD~~---~---~g~s~~--------G~~f~dE~~~~~h~~~G~LsMan~----------GpntngSQFf 167 (249)
T PTZ00221 112 HVDRNNNIIVLGELD---S---FNVSST--------GTPIADEGYRHRHTERGLLTMISE----------GPHTSGSVFG 167 (249)
T ss_pred EEeCCCCEEEeCCCC---C---CCccCC--------CCcccCccccccCCCCCEEEeCcC----------CCCCccceEE
Confidence 99985 899999972 1 223333 567899999999999999999997 7999999999
Q ss_pred EEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845 210 ITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289 (306)
Q Consensus 210 Itl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l 289 (306)
||+.+ +++||++|+|||||++|||||++|++++++. .++|.++|+|.+||+|
T Consensus 168 ITl~~--~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~--------------------------~grP~~~V~I~~Cgvl 219 (249)
T PTZ00221 168 ITLGP--SPSLDFKQVVFGKAVDDLSLLEKLESLPLDD--------------------------VGRPLLPVTVSFCGAL 219 (249)
T ss_pred EECCC--CCccCCCceEEEEEEeCHHHHHHHHcCCcCC--------------------------CCCCCCCeEEEECeEe
Confidence 99998 9999999999999999999999999998864 5899999999999999
Q ss_pred cc
Q 021845 290 KL 291 (306)
Q Consensus 290 ~~ 291 (306)
+.
T Consensus 220 ~~ 221 (249)
T PTZ00221 220 TG 221 (249)
T ss_pred cC
Confidence 98
No 5
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=6.3e-45 Score=321.35 Aligned_cols=160 Identities=31% Similarity=0.582 Sum_probs=144.4
Q ss_pred CceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCcc--------ccCceeEeecCCe
Q 021845 65 TDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSL--------YRNTLVHKIFPGQ 136 (306)
Q Consensus 65 ~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~--------Y~gt~FhRVi~~f 136 (306)
++++||||++ ++++.|||+||||.+.||+||+||++||++ .+ |+++.||||+++|
T Consensus 18 ~~~v~~di~~----------------~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g-~~~~~g~~~~Y~~~~fhrVi~~f 80 (186)
T PLN03149 18 NPVVFFDVTI----------------GGIPAGRIKMELFADIAPKTAENFRQFCTG-EFRKAGLPQGYKGCQFHRVIKDF 80 (186)
T ss_pred CCEEEEEEee----------------CCcccccEEEEEcCCCCcHHHHHHHHHHhh-hccccCcccccCCcEEEEEcCCc
Confidence 5789999998 778999999999999999999999999986 33 9999999999999
Q ss_pred EEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCC
Q 021845 137 FFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGP 216 (306)
Q Consensus 137 ~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~ 216 (306)
+||+||+ ..+++.++.+++ +..|++|.+.++|+++|+|+|++. ++++++||||||+.+
T Consensus 81 ~iqgGd~--~~~~g~g~~~~~--------g~~f~~e~~~~~h~~~G~lsma~~----------g~~s~~sqFfIt~~~-- 138 (186)
T PLN03149 81 MIQGGDF--LKGDGTGCVSIY--------GSKFEDENFIAKHTGPGLLSMANS----------GPNTNGCQFFITCAK-- 138 (186)
T ss_pred EEEcCCc--ccCCCCCccccc--------CCccCCcccccccCCCCEEEEeeC----------CCCCcccEEEEECCC--
Confidence 9999997 345666776665 456788888899999999999997 799999999999997
Q ss_pred CCCCCCCCcEEEEEE-cCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845 217 CPQLDNKNIVFGTVL-QGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289 (306)
Q Consensus 217 ~p~LDg~~tVFGrVv-~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l 289 (306)
.++||++|+|||||+ +|||||++|++++++. .++|.++|+|.+||++
T Consensus 139 ~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~--------------------------~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 139 CDWLDNKHVVFGRVLGDGLLVVRKIENVATGP--------------------------NNRPKLACVISECGEM 186 (186)
T ss_pred CCccCCCceEEEEEEECcHHHHHHHHcCCCCC--------------------------CCCCcCCeEEEeCEeC
Confidence 999999999999999 7999999999999864 5899999999999985
No 6
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.3e-44 Score=318.74 Aligned_cols=162 Identities=33% Similarity=0.645 Sum_probs=144.9
Q ss_pred CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--------CccccCceeEeecCC
Q 021845 64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--------RSLYRNTLVHKIFPG 135 (306)
Q Consensus 64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--------~~~Y~gt~FhRVi~~ 135 (306)
.+++||||+++ ++++.|+|+||||.+.||+||+||++||++ .++|+|+.||||+|+
T Consensus 14 ~~~~v~~di~i----------------~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~ 77 (183)
T PTZ00060 14 KRPKVFFDISI----------------DNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQ 77 (183)
T ss_pred CCCEEEEEEEE----------------CCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCC
Confidence 47899999999 789999999999999999999999999973 269999999999999
Q ss_pred eEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCC
Q 021845 136 QFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPG 215 (306)
Q Consensus 136 f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~ 215 (306)
|+||+||+ ..+++.+|.+++ +..+++|.+.++|+++|+|+|++. ++++++||||||+++
T Consensus 78 ~~iqgGd~--~~~~g~~g~~~~--------g~~~~~e~~~~~h~~~G~lsma~~----------g~~~~~sqFfIt~~~- 136 (183)
T PTZ00060 78 FMCQGGDI--TNHNGTGGESIY--------GRKFTDENFKLKHDQPGLLSMANA----------GPNTNGSQFFITTVP- 136 (183)
T ss_pred CeEEeCCc--cCCCCCCCCccc--------ccccCCccccccCCCCCEEEeccC----------CCCCCcceEEEEeCC-
Confidence 99999997 345566666665 455778888899999999999987 789999999999998
Q ss_pred CCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845 216 PCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK 290 (306)
Q Consensus 216 ~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~ 290 (306)
.++||++|+|||||++|||||++|+++++. +++|.++|+|++||+|.
T Consensus 137 -~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~---------------------------~~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 137 -CPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ---------------------------SGYPKKPVVVTDCGELQ 183 (183)
T ss_pred -CcccCCCccEEEEEEccHHHHHHHHccCCC---------------------------CCCCcCCeEEEEeEEcC
Confidence 999999999999999999999999998774 48999999999999973
No 7
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2.5e-44 Score=311.58 Aligned_cols=157 Identities=31% Similarity=0.629 Sum_probs=141.4
Q ss_pred ceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc-Cc------cccCceeEeecCCeEE
Q 021845 66 DSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS-RS------LYRNTLVHKIFPGQFF 138 (306)
Q Consensus 66 ~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~-~~------~Y~gt~FhRVi~~f~i 138 (306)
|+|||||++ ++++.|+|+||||.+.||+||+||++||++ .+ +|+++.||||+++|+|
T Consensus 1 p~v~~di~i----------------~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~i 64 (164)
T cd01926 1 PKVFFDITI----------------GGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMI 64 (164)
T ss_pred CEEEEEEeE----------------CCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEE
Confidence 579999998 789999999999999999999999999984 13 8999999999999999
Q ss_pred EcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCC
Q 021845 139 LAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCP 218 (306)
Q Consensus 139 q~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p 218 (306)
|+||+ ..+++.++.+++ +..|++|.+.++|+++|+|+||+. ++++++|||||++++ .+
T Consensus 65 q~Gd~--~~~~g~~~~~~~--------g~~~~~e~~~~~h~~~G~lsma~~----------~~~~~~sqFfIt~~~--~~ 122 (164)
T cd01926 65 QGGDF--TRGNGTGGKSIY--------GEKFPDENFKLKHTGPGLLSMANA----------GPNTNGSQFFITTVK--TP 122 (164)
T ss_pred EcCCc--cCCCCCCCCccc--------CCccCCCCccccCCCccEEEeeEC----------CCCCcccEEEEEeCC--CC
Confidence 99997 345566666665 455778888899999999999997 789999999999997 99
Q ss_pred CCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeee
Q 021845 219 QLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCG 287 (306)
Q Consensus 219 ~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg 287 (306)
+||++|+|||||++|||||++|++++++ +++|+++|+|.+||
T Consensus 123 ~Ld~~~tvFG~V~~G~dvl~~i~~~~~~---------------------------~~~P~~~i~I~~cG 164 (164)
T cd01926 123 WLDGKHVVFGKVVEGMDVVKKIENVGSG---------------------------NGKPKKKVVIADCG 164 (164)
T ss_pred ccCCcccEEEEEEEcHHHHHHHHcCCCC---------------------------CCCCcCCeEEEECC
Confidence 9999999999999999999999999886 38999999999998
No 8
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-44 Score=308.46 Aligned_cols=153 Identities=29% Similarity=0.462 Sum_probs=132.7
Q ss_pred CCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCC
Q 021845 90 SSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTL 169 (306)
Q Consensus 90 ~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~ 169 (306)
+..|+.|+|+||||++.||+||+||++||+. +||+|+.||||+++|||||||+ ..+++.+|. ++.|
T Consensus 3 ~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~-g~Ydg~~FHRVi~~FmiQgGd~--~~~~g~gg~-----------~~~f 68 (158)
T COG0652 3 ILETNKGDITIELYPDKAPKTVANFLQLVKE-GFYDGTIFHRVIPGFMIQGGDP--TGGDGTGGP-----------GPPF 68 (158)
T ss_pred eeeccCCCEEEEECCCcCcHHHHHHHHHHHc-CCCCCceEEEeecCceeecCCC--CCCCCCCCC-----------CCCC
Confidence 3689999999999999999999999999999 9999999999999999999998 344466665 3668
Q ss_pred CCCcccccCCC--ceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCC
Q 021845 170 RPNAFLLKHSR--GGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYK 247 (306)
Q Consensus 170 ~de~~~l~h~~--~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~ 247 (306)
++|.+...|++ +|+|||||.+ .||||+||||||+.+ .+|||++|+|||+|++|||||++|++..+..
T Consensus 69 ~~E~~~~~~~~~~~G~lsMA~~g---------~P~t~~SQFFI~~~~--~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~ 137 (158)
T COG0652 69 KDENFALNGDRHKRGTLSMARAG---------DPNSNGSQFFITVVD--NPFLDGKYTVFGQVVEGMDVVDKIKNGDTDD 137 (158)
T ss_pred cccccccccccCCcceEeEcccC---------CcCCccCeEEEEecC--CcccCCCCcEEEEEehhHHHHHHHHcCCccC
Confidence 89988888877 9999999983 499999999999998 9999999999999999999999999987764
Q ss_pred CchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845 248 PSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289 (306)
Q Consensus 248 ~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l 289 (306)
.. . ..+.|..+|+|.+..++
T Consensus 138 ~~---------------------~-~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 138 SG---------------------Y-VQDVPADPVKILSVKIV 157 (158)
T ss_pred CC---------------------c-ccCCCCCCeEEeeeeee
Confidence 10 0 13677788888887664
No 9
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-45 Score=322.94 Aligned_cols=164 Identities=25% Similarity=0.481 Sum_probs=154.5
Q ss_pred CCCCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--CccccCceeEeecCCeEEE
Q 021845 62 TTITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--RSLYRNTLVHKIFPGQFFL 139 (306)
Q Consensus 62 ~~~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--~~~Y~gt~FhRVi~~f~iq 139 (306)
..-+++||+|+.| ++...|||+++|..+..|+|++||+.||++ +..|+|+.||||||.||+|
T Consensus 133 a~~~pqv~~~iki----------------g~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcq 196 (298)
T KOG0111|consen 133 AMENPQVYHDIKI----------------GEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQ 196 (298)
T ss_pred hhhChHhhhheee----------------cccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhcc
Confidence 3568999999999 788999999999999999999999999995 5789999999999999999
Q ss_pred cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCC
Q 021845 140 AGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQ 219 (306)
Q Consensus 140 ~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~ 219 (306)
||| |+.++|++|.+|| |.+|.||+|.|+|..+|+|||||. |+|+||||||||+.. +.|
T Consensus 197 ggd--ftn~ngtggksiy--------gkkfddenf~lkht~pgtlsmans----------gantngsqffict~k--tdw 254 (298)
T KOG0111|consen 197 GGD--FTNGNGTGGKSIY--------GKKFDDENFTLKHTMPGTLSMANS----------GANTNGSQFFICTEK--TDW 254 (298)
T ss_pred CCc--cccCCCCCCcccc--------cccccccceeeecCCCceeecccc----------CCCCCCceEEEEecc--ccc
Confidence 999 4899999999998 688999999999999999999998 899999999999998 999
Q ss_pred CCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845 220 LDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK 290 (306)
Q Consensus 220 LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~ 290 (306)
||++|+|||+|++||+||++|++..+. .++|.+.|+|.+||+|+
T Consensus 255 ldgkhvvfghv~eg~~vvrq~e~qgsk---------------------------sgkp~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 255 LDGKHVVFGHVVEGMNVVRQVEQQGSK---------------------------SGKPQQKVKIVECGEIE 298 (298)
T ss_pred ccCceeEEeeecchHHHHHHHHhccCC---------------------------CCCcceEEEEEeccccC
Confidence 999999999999999999999999765 49999999999999974
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.1e-43 Score=306.26 Aligned_cols=152 Identities=26% Similarity=0.409 Sum_probs=137.0
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
..|+.|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|+||+||+ .+++.+|.+++ +..++
T Consensus 4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Y~~~~f~rv~~~~~iq~Gd~---~~~g~~~~~~~--------g~~~~ 71 (159)
T cd01923 4 LHTNKGDLNLELHCDKAPKACENFIKLCKK-GYYDGTIFHRSIRNFMIQGGDP---TGTGRGGESIW--------GKPFK 71 (159)
T ss_pred EEEccccEEEEEeCCCChHHHHHHHHHHhc-CccCCcEEEEEeCCcEEEeccc---CCCCCCCcccc--------CCccC
Confidence 468899999999999999999999999999 9999999999999999999997 45666777665 34566
Q ss_pred CCc-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845 171 PNA-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249 (306)
Q Consensus 171 de~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~ 249 (306)
+|. ..++|+++|+|+|++. ++++++||||||+++ .++||++|+|||||++|||||++|+++++++
T Consensus 72 ~E~~~~~~h~~~G~v~ma~~----------~~~s~~sqFfIt~~~--~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~-- 137 (159)
T cd01923 72 DEFKPNLSHDGRGVLSMANS----------GPNTNGSQFFITYRS--CKHLDGKHTVFGRVVGGLETLEAMENVPDPG-- 137 (159)
T ss_pred cccccCcCcCCCcEEEEeeC----------CCCCcccEEEEECCC--CcccCCCccEEEEEEcCHHHHHHHHcCCCCC--
Confidence 664 3578999999999997 789999999999997 9999999999999999999999999998864
Q ss_pred hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845 250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK 292 (306)
Q Consensus 250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~ 292 (306)
+++|+++|+|.+|+++.++
T Consensus 138 ------------------------~~~P~~~i~I~~~~i~~dp 156 (159)
T cd01923 138 ------------------------TDRPKEEIKIEDTSVFVDP 156 (159)
T ss_pred ------------------------CCCCCCCeEEEEeEEEeCC
Confidence 5899999999999999984
No 11
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-44 Score=294.62 Aligned_cols=148 Identities=25% Similarity=0.445 Sum_probs=138.0
Q ss_pred CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845 92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP 171 (306)
Q Consensus 92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d 171 (306)
+|++|.|++|||-+.||+||+||.+|++. +||+|+.||||+++|||||||+ .++|.+|.++| |.+|+|
T Consensus 15 eTsmG~i~~ElY~kHaP~TC~NF~eLarr-gYYn~v~FHRii~DFmiQGGDP---TGTGRGGaSIY--------G~kF~D 82 (164)
T KOG0881|consen 15 ETSMGKITLELYWKHAPRTCQNFAELARR-GYYNGVIFHRIIKDFMIQGGDP---TGTGRGGASIY--------GDKFED 82 (164)
T ss_pred eecccceehhhhhhcCcHHHHHHHHHHhc-ccccceeeeehhhhheeecCCC---CCCCCCccccc--------cchhhh
Confidence 55669999999999999999999999999 9999999999999999999998 88999999998 567888
Q ss_pred Ccc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCch
Q 021845 172 NAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSE 250 (306)
Q Consensus 172 e~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~ 250 (306)
|-. .|+|..+|+|||||. +||+|||||||||.+ .+||||+|++||||+.||+|+.+|-.+.|+.
T Consensus 83 Ei~~dLkhTGAGILsMANa----------GPnTNgSQFFiTLAP--t~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~--- 147 (164)
T KOG0881|consen 83 EIHSDLKHTGAGILSMANA----------GPNTNGSQFFITLAP--TQWLDGKHTIFGRVCSGMEVIKRMGMVETDN--- 147 (164)
T ss_pred hhhhhhcccchhhhhhhcc----------CCCCCCceEEEEecC--ccccCCcceeehhhhhhHHHHHhhcceecCC---
Confidence 854 699999999999998 899999999999998 9999999999999999999999999999985
Q ss_pred hhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845 251 RIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289 (306)
Q Consensus 251 ~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l 289 (306)
.+||..+|+|.+.-++
T Consensus 148 -----------------------~DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 148 -----------------------SDRPIDEVKIIKAYPS 163 (164)
T ss_pred -----------------------CCCCccceeeEeeecC
Confidence 6999999999887543
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.5e-43 Score=306.00 Aligned_cols=160 Identities=28% Similarity=0.392 Sum_probs=137.6
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
.+|+.|+|+||||.+.||+||+||++||++ ++|+|+.||||+++|+||+||+ .+++.+|.+++.... ...+..+.
T Consensus 2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~-~~Y~g~~fhrvi~~f~iQgGd~---~~~g~~~~~~~~~~~-~~~~~~~~ 76 (166)
T cd01921 2 LETTLGDLVIDLFTDECPLACLNFLKLCKL-KYYNFCLFYNVQKDFIAQTGDP---TGTGAGGESIYSQLY-GRQARFFE 76 (166)
T ss_pred cEeccCCEEEEEcCCCCCHHHHHHHHHHhc-CCcCCCEEEEEeCCceEEECCc---CCCCCCCcccccccc-cccCcccC
Confidence 368899999999999999999999999999 9999999999999999999997 455666666653211 11124566
Q ss_pred CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845 171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249 (306)
Q Consensus 171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~ 249 (306)
+|.. .++|+++|+|+||+. ++++++||||||+.+ ..++||++|+|||||++|||||++|+++++++
T Consensus 77 ~e~~~~~~h~~~G~l~ma~~----------~~~~~~SQFfIt~~~-~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~-- 143 (166)
T cd01921 77 PEILPLLKHSKKGTVSMVNA----------GDNLNGSQFYITLGE-NLDYLDGKHTVFGQVVEGFDVLEKINDAIVDD-- 143 (166)
T ss_pred cccCCccccCCceEEEEeEC----------CCCCccceEEEEcCC-CCcccCCCccEEEEEEcCHHHHHHHHcCCCCC--
Confidence 6653 688999999999998 688899999999974 37999999999999999999999999998874
Q ss_pred hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845 250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK 292 (306)
Q Consensus 250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~ 292 (306)
.++|+++|+|.+|++|.++
T Consensus 144 ------------------------~~~P~~~i~I~~~~i~~~p 162 (166)
T cd01921 144 ------------------------DGRPLKDIRIKHTHILDDP 162 (166)
T ss_pred ------------------------CCCCCCCeEEEEEEEECCC
Confidence 5899999999999999984
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=7.3e-43 Score=297.78 Aligned_cols=145 Identities=32% Similarity=0.474 Sum_probs=131.0
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
..|++|+|+||||.+.||+||+||++||++ ++|+|+.||||++||++|+||+ .+++.++.+++ +..|+
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Y~~~~f~Rvi~~f~iq~Gd~---~~~g~g~~~~~--------~~~~~ 69 (148)
T cd01927 2 IHTTKGDIHIRLFPEEAPKTVENFTTHARN-GYYNNTIFHRVIKGFMIQTGDP---TGDGTGGESIW--------GKEFE 69 (148)
T ss_pred eEeccccEEEEEeCCCCcHHHHHHHHHhhc-CCcCCcEEEEEcCCcEEEeccc---CCCCCCCCccc--------CCccc
Confidence 368899999999999999999999999999 9999999999999999999997 45666776665 34577
Q ss_pred CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845 171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249 (306)
Q Consensus 171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~ 249 (306)
+|.. .++|+++|+|+||+. ++++++|||||++++ .++||++|+|||||++|||||++|+++++++
T Consensus 70 ~e~~~~~~h~~~G~l~ma~~----------~~~s~~SqFfIt~~~--~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~-- 135 (148)
T cd01927 70 DEFSPSLKHDRPYTLSMANA----------GPNTNGSQFFITTVA--TPWLDNKHTVFGRVVKGMDVVQRIENVKTDK-- 135 (148)
T ss_pred cccccccCcCCCeEEEEeeC----------CCCCCCceEEEEcCC--CcccCCCceEEEEEEcCHHHHHHHHcCCCCC--
Confidence 7765 688999999999987 799999999999998 9999999999999999999999999999874
Q ss_pred hhhhhhhhhHhhhcccccccccccCCCCCCcEEEee
Q 021845 250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISD 285 (306)
Q Consensus 250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~ 285 (306)
+++|.++|+|.+
T Consensus 136 ------------------------~~~P~~~i~I~~ 147 (148)
T cd01927 136 ------------------------NDRPYEDIKIIN 147 (148)
T ss_pred ------------------------CCCCcCCeEEEe
Confidence 589999999985
No 14
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1e-42 Score=298.49 Aligned_cols=147 Identities=30% Similarity=0.483 Sum_probs=132.2
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
.+|+.|+|+||||.+.||+||+||++||++ ++|+|+.||||+++|++|+||+ .+++.++.+++ +..|+
T Consensus 5 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Y~~~~f~rv~~~f~iq~Gd~---~~~g~g~~~~~--------~~~~~ 72 (153)
T cd01928 5 LHTNLGDIKIELFCDDCPKACENFLALCAS-GYYNGCIFHRNIKGFMVQTGDP---TGTGKGGESIW--------GKKFE 72 (153)
T ss_pred EEEccccEEEEEcCCCCcHHHHHHHHHHhc-CccCCcEEEEeCCCCEEEcccc---CCCCCCCCccC--------CCccc
Confidence 368899999999999999999999999999 9999999999999999999997 45666666654 35677
Q ss_pred CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845 171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249 (306)
Q Consensus 171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~ 249 (306)
+|.. .++|+++|+|+|++. ++++++|||||++++ .++||++|+|||||++|||||++|+++++++
T Consensus 73 ~e~~~~~~~~~~G~v~ma~~----------~~~~~~SqFfI~~~~--~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~-- 138 (153)
T cd01928 73 DEFRETLKHDSRGVVSMANN----------GPNTNGSQFFITYAK--QPHLDGKYTVFGKVIDGFETLDTLEKLPVDK-- 138 (153)
T ss_pred cccccCCCcCCCcEEEEeeC----------CCCCcccEEEEEeCC--CcccCCCceEEEEEEeCHHHHHHHHcCCCCC--
Confidence 7765 578999999999997 789999999999998 8999999999999999999999999998864
Q ss_pred hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeee
Q 021845 250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCG 287 (306)
Q Consensus 250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg 287 (306)
.++|.++|+|.+|.
T Consensus 139 ------------------------~~~P~~~i~I~~~~ 152 (153)
T cd01928 139 ------------------------KYRPLEEIRIKDVT 152 (153)
T ss_pred ------------------------CCCCcCCeEEEEeE
Confidence 58999999999984
No 15
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2e-41 Score=299.94 Aligned_cols=151 Identities=26% Similarity=0.401 Sum_probs=124.5
Q ss_pred CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845 92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP 171 (306)
Q Consensus 92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d 171 (306)
+|+.|+|+||||.+.||+||+||++||+. +||+|+.||||+++|+||||++. ... ++ ..+ +..+.+
T Consensus 34 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Ydg~~FhRvi~~f~iQgG~~~--~~~--~~-~~~--------~~~~~~ 99 (190)
T PRK10903 34 TTSAGNIELELNSQKAPVSVKNFVDYVNS-GFYNNTTFHRVIPGFMIQGGGFT--EQM--QQ-KKP--------NPPIKN 99 (190)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHHhc-CCcCCcEEEEEeCCceEEeCCcC--CCC--CC-CCC--------CCcccC
Confidence 45679999999999999999999999999 99999999999999999999862 111 11 111 234556
Q ss_pred CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC-----CCcEEEEEEcCHHHHHHHHcCCCC
Q 021845 172 NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN-----KNIVFGTVLQGLDVVAAIASIPTY 246 (306)
Q Consensus 172 e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg-----~~tVFGrVv~GmdVl~kI~~~~t~ 246 (306)
|.....|+++|+|+||+.+ ++|+++|||||++++ .++||+ +|+|||||++|||||++|++++++
T Consensus 100 e~~~~l~~~~G~lama~~~---------~~~sn~SQFfIt~~~--~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~ 168 (190)
T PRK10903 100 EADNGLRNTRGTIAMARTA---------DKDSATSQFFINVAD--NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH 168 (190)
T ss_pred cccccCcCCCcEEEeCCCC---------CCCCcccEEEEECcC--cccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence 6544456678999999974 689999999999998 889984 899999999999999999999986
Q ss_pred CCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845 247 KPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289 (306)
Q Consensus 247 ~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l 289 (306)
+. +...++|.++|+|.+|+++
T Consensus 169 ~~----------------------~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 169 DV----------------------GPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CC----------------------CCCCCcccCCeEEEEEEEe
Confidence 30 1114799999999999886
No 16
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=5.3e-42 Score=291.90 Aligned_cols=144 Identities=26% Similarity=0.466 Sum_probs=128.8
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
..|+.|+|+||||.+.||+||+||++||++ ++|+++.||||+++|++|+||+ .+++.++.+++ +..|+
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Y~~~~f~Rvi~~f~iq~Gd~---~~~g~~~~~~~--------~~~~~ 69 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELAKR-GYYNGTIFHRLIKDFMIQGGDP---TGTGRGGASIY--------GKKFE 69 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHHhc-CCcCCcEEEEEcCCcEEEeccc---CCCCCCccccc--------CCCcc
Confidence 368899999999999999999999999999 9999999999999999999997 45566666655 34577
Q ss_pred CCc-ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845 171 PNA-FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249 (306)
Q Consensus 171 de~-~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~ 249 (306)
+|. ..++|+++|+|+|++. ++++++|||||++++ .|+||++|+|||||++|||||++|++++++
T Consensus 70 ~e~~~~~~h~~~G~l~ma~~----------~~~s~~sqFfIt~~~--~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~--- 134 (146)
T cd01922 70 DEIHPELKHTGAGILSMANA----------GPNTNGSQFFITLAP--TPWLDGKHTIFGRVSKGMKVIENMVEVQTQ--- 134 (146)
T ss_pred cccccCcCCCCCeEEEEeeC----------CCCCCccEEEEEcCC--CcccCCCCCEEEEEEcCHHHHHHHHhCCCC---
Confidence 774 4689999999999997 799999999999998 999999999999999999999999999886
Q ss_pred hhhhhhhhhHhhhcccccccccccCCCCCCcEEEee
Q 021845 250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISD 285 (306)
Q Consensus 250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~ 285 (306)
.++|.++|+|.+
T Consensus 135 ------------------------~~~P~~~I~I~~ 146 (146)
T cd01922 135 ------------------------TDRPIDEVKILK 146 (146)
T ss_pred ------------------------CCCcCCCeEEeC
Confidence 389999999963
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=8.3e-41 Score=291.52 Aligned_cols=152 Identities=24% Similarity=0.380 Sum_probs=135.1
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
..|++|+|+||||.+.||+||+||++||+. ++|+|+.||||+++|+||+||+ .+++.+|.+++ +..|.
T Consensus 10 i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~-~~Y~~~~f~Rvi~~f~iQgGd~---~~~g~g~~s~~--------g~~~~ 77 (171)
T cd01925 10 LKTTAGDIDIELWSKEAPKACRNFIQLCLE-GYYDNTIFHRVVPGFIIQGGDP---TGTGTGGESIY--------GEPFK 77 (171)
T ss_pred EEEccccEEEEEeCCCChHHHHHHHHHHhc-CCCCCCEEEEEcCCcEEEcccc---CCCCccCcccC--------CCccC
Confidence 356779999999999999999999999999 9999999999999999999997 45667777765 34577
Q ss_pred CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEE-cCHHHHHHHHcCCCCCC
Q 021845 171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL-QGLDVVAAIASIPTYKP 248 (306)
Q Consensus 171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv-~GmdVl~kI~~~~t~~~ 248 (306)
+|.. .++|+++|+|+|++. ++++++|||||++++ .++||++|+|||||+ ++|++|++|+++++++
T Consensus 78 ~E~~~~~~~~~~G~l~ma~~----------g~~s~~sqFfIt~~~--~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~- 144 (171)
T cd01925 78 DEFHSRLRFNRRGLVGMANA----------GDDSNGSQFFFTLDK--ADELNNKHTLFGKVTGDTIYNLLKLAEVETDK- 144 (171)
T ss_pred cccccCcCCCCCcEEEECcC----------CCCCcccEEEEEcCC--CcccCCCceEEEEEEECcHHHHHHHhcCCcCC-
Confidence 7754 578899999999998 788999999999997 999999999999999 4688999999998874
Q ss_pred chhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845 249 SERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK 292 (306)
Q Consensus 249 ~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~ 292 (306)
+++|.++|+|.+|+++.++
T Consensus 145 -------------------------~~~P~~~i~I~~~~i~~~p 163 (171)
T cd01925 145 -------------------------DERPVYPPKITSVEVLENP 163 (171)
T ss_pred -------------------------CCCcCCCeEEEEEEEEcCC
Confidence 5789999999999999984
No 18
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=325.59 Aligned_cols=153 Identities=31% Similarity=0.436 Sum_probs=142.6
Q ss_pred CCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCC
Q 021845 86 PTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPN 165 (306)
Q Consensus 86 ~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~ 165 (306)
+.-++..|+.|+|.|.||+++||+||+||...|++ +||+|..|||||+|||||+||+ .++|+||++||
T Consensus 404 ~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rn-gyy~~~~fhriik~fmiqtgdp---~g~gtggesiw-------- 471 (558)
T KOG0882|consen 404 GKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRN-GYYDNHTFHRIIKGFMIQTGDP---LGDGTGGESIW-------- 471 (558)
T ss_pred ccceEEEecccceEEEecccccchhhhhhhccccC-ccccCcchHHhhhhheeecCCC---CCCCCCCcccc--------
Confidence 44557889999999999999999999999999999 9999999999999999999998 89999999998
Q ss_pred CCCCCCCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCC
Q 021845 166 TDTLRPNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP 244 (306)
Q Consensus 166 g~~~~de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~ 244 (306)
|+.|+||-. .|+|++|-+|||||. ||||||||||||+.+ +||||++|+|||||+.|||||++|+++.
T Consensus 472 g~dfedefh~~lrhdrpft~smana----------g~ntngsqffit~~~--tpwld~khtvfgrv~~gm~vvqri~~v~ 539 (558)
T KOG0882|consen 472 GKDFEDEFHPNLRHDRPFTVSMANA----------GPNTNGSQFFITTVP--TPWLDGKHTVFGRVTAGMDVVQRIEQVK 539 (558)
T ss_pred cccchhhcCcccccCCCceEEeccc----------CCCCCCceEEEEecC--ccccCCcceeEEEEecchhHHhHhhhcc
Confidence 566888865 699999999999998 899999999999998 9999999999999999999999999999
Q ss_pred CCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845 245 TYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE 288 (306)
Q Consensus 245 t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~ 288 (306)
|++ .+||+++|.|.+.-+
T Consensus 540 t~k--------------------------~drp~e~v~iinisv 557 (558)
T KOG0882|consen 540 TDK--------------------------YDRPYEDVKIINISV 557 (558)
T ss_pred cCc--------------------------CCCCCCceeEEEEec
Confidence 976 699999999988643
No 19
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-41 Score=317.53 Aligned_cols=157 Identities=27% Similarity=0.410 Sum_probs=148.7
Q ss_pred CCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCC
Q 021845 86 PTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPN 165 (306)
Q Consensus 86 ~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~ 165 (306)
++|+...|+.|.|-|||+++.+|++|+||++||+. +||+|+.|||.|++|||||||+ .++|.||++||
T Consensus 277 kgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~-gYYnnt~FHRsIrnFmiQGGDP---TGTG~GGeSiW-------- 344 (518)
T KOG0883|consen 277 KGYVRLVTNHGPLNLELHCDYAPRACENFITLCKN-GYYNNTIFHRSIRNFMIQGGDP---TGTGRGGESIW-------- 344 (518)
T ss_pred cceEEEeccCCceeeEeecCcchHHHHHHHHHHhc-ccccchHHHHHHHHHeeeCCCC---CCCCCCCcccc--------
Confidence 67788899999999999999999999999999999 9999999999999999999998 88999999998
Q ss_pred CCCCCCCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCC
Q 021845 166 TDTLRPNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIP 244 (306)
Q Consensus 166 g~~~~de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~ 244 (306)
|..|.||.. .+.|+.+|+|||||+ |||||||||||+..+ +.|||++|+||||||-|+|+|.+|+.++
T Consensus 345 gKpFkDEf~~~l~H~gRGvlSMANs----------GpnTNgSQFFItyrs--ckhLd~KHTIFGrvVGGldtL~amEnve 412 (518)
T KOG0883|consen 345 GKPFKDEFCSNLSHDGRGVLSMANS----------GPNTNGSQFFITYRS--CKHLDNKHTIFGRVVGGLDTLTAMENVE 412 (518)
T ss_pred CCccccccCCCCCcCCcceEeeccC----------CCCCCCceEEEEecc--hhhccccceeeeeeeccHHHHHHHhcCC
Confidence 577888854 799999999999999 899999999999998 9999999999999999999999999999
Q ss_pred CCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccC
Q 021845 245 TYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLK 292 (306)
Q Consensus 245 t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~ 292 (306)
+++ .++|+.+|+|.+.-|..++
T Consensus 413 ~d~--------------------------~DrP~e~I~i~~~~VFVdP 434 (518)
T KOG0883|consen 413 TDE--------------------------KDRPKEEIKIEDAIVFVDP 434 (518)
T ss_pred CCC--------------------------CCCcccceEEeeeEEeeCc
Confidence 986 5999999999999999885
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.3e-39 Score=282.13 Aligned_cols=151 Identities=25% Similarity=0.391 Sum_probs=122.0
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
..|+.|+|+|+||.+.||+||+||++||+. +||+|+.||||+++|+||||+.. .+.+.. .+ +..+.
T Consensus 4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Yd~~~fhRvi~~f~iQgGd~~--~~~~~~---~~--------~~~~~ 69 (164)
T PRK10791 4 FHTNHGDIVIKTFDDKAPETVKNFLDYCRE-GFYNNTIFHRVINGFMIQGGGFE--PGMKQK---AT--------KEPIK 69 (164)
T ss_pred EEEccccEEEEEeCCCCcHHHHHHHHHHhc-CCcCCcEEEEEecCcEEEeCCcC--CCCCcC---CC--------CCCcC
Confidence 368899999999999999999999999999 99999999999999999999862 222111 11 23455
Q ss_pred CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCC-------C-CCcEEEEEEcCHHHHHHHH
Q 021845 171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLD-------N-KNIVFGTVLQGLDVVAAIA 241 (306)
Q Consensus 171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LD-------g-~~tVFGrVv~GmdVl~kI~ 241 (306)
+|.. .++| ++|+||||+.+ +|++++|||||++.+ .++|| + +|+|||||++|||||++|+
T Consensus 70 ~e~~~~~~~-~~G~lsma~~~---------~p~s~~SQFfI~~~~--~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~ 137 (164)
T PRK10791 70 NEANNGLKN-TRGTLAMARTQ---------APHSATAQFFINVVD--NDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIK 137 (164)
T ss_pred CcccccccC-CCcEEEECCCC---------CcCCccceEEEEecC--chhhcccccccCCCCccEEEEEecCHHHHHHHH
Confidence 5533 3445 68999999974 589999999999997 77776 3 7999999999999999999
Q ss_pred cCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845 242 SIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289 (306)
Q Consensus 242 ~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l 289 (306)
++++++. |. ..++|.++|+|.+|.+.
T Consensus 138 ~~~~~~~--------------~~--------~~~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 138 GVATGRS--------------GM--------HQDVPKEDVIIESVTVS 163 (164)
T ss_pred cCcCCCC--------------Cc--------cCCCcCCCeEEEEEEEe
Confidence 9988630 00 03699999999999764
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=8.9e-39 Score=274.58 Aligned_cols=147 Identities=27% Similarity=0.428 Sum_probs=121.6
Q ss_pred CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845 92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP 171 (306)
Q Consensus 92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d 171 (306)
.|+.|+|+||||.+.||+||+||++||+. +||+|+.||||+|+|+||+||+. ... ..+ .+ +..+.+
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-g~Yd~~~fhRvi~~f~iQ~Gd~~--~~~-~~~--~~--------~~~~~~ 68 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRK-GFYDNTIFHRVISGFVIQGGGFT--PDL-AQK--ET--------LKPIKN 68 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhc-CCCCCCEEEEEeCCcEEEeCCCC--CCC-Ccc--cc--------CCcccC
Confidence 67899999999999999999999999999 99999999999999999999872 111 111 11 234556
Q ss_pred CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCC-----CCcEEEEEEcCHHHHHHHHcCCCC
Q 021845 172 NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDN-----KNIVFGTVLQGLDVVAAIASIPTY 246 (306)
Q Consensus 172 e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg-----~~tVFGrVv~GmdVl~kI~~~~t~ 246 (306)
|.....|+++|+|+||+.+ ++++++|||||++++ .++||+ +|+|||||++|||||++|++++++
T Consensus 69 e~~~~~~~~~G~v~ma~~~---------~~~s~~SqFfI~~~~--~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~ 137 (155)
T cd01920 69 EAGNGLSNTRGTIAMARTN---------APDSATSQFFINLKD--NASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETY 137 (155)
T ss_pred cccccccCCceEEEECCCC---------CCCCccceEEEECCC--chhcCCcccCCCccEEEEEecCHHHHHHHHcCCcc
Confidence 6544456778999999974 689999999999998 899995 799999999999999999999997
Q ss_pred CCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEee
Q 021845 247 KPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISD 285 (306)
Q Consensus 247 ~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~ 285 (306)
.. +...++|+.+|+|.+
T Consensus 138 ~~----------------------~~~~~~p~~~v~i~~ 154 (155)
T cd01920 138 SF----------------------GSYQDVPVQDVIIES 154 (155)
T ss_pred CC----------------------CCcCCCcCCCeEEEE
Confidence 40 111379999999986
No 22
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-39 Score=259.19 Aligned_cols=152 Identities=28% Similarity=0.451 Sum_probs=139.3
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
..|..|+|.||||.+.+|++|+||+.||.. .||+|+.|||-+|||++|+|++ ...|.+|.+|| |.+|+
T Consensus 5 lht~~gdikiev~~e~tpktce~~l~~~~~-~~~n~~~~~~~~~~f~v~~~~~---~~tgrgg~siw--------g~~fe 72 (161)
T KOG0884|consen 5 LHTDVGDIKIEVFCERTPKTCENFLALCAS-DYYNGCIFHRNIKGFMVQTGDP---THTGRGGNSIW--------GKKFE 72 (161)
T ss_pred EeeccCcEEEEEEecCChhHHHHHHHHhhh-hhccceeecCCCCCcEEEeCCC---CCCCCCCcccc--------CCcch
Confidence 478899999999999999999999999999 9999999999999999999998 78889999998 56788
Q ss_pred CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845 171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249 (306)
Q Consensus 171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~ 249 (306)
||.. .|+|+.+|+|||||. |||+|+||||||.+. .+|||-+|+|||+||+|+|.|+.|+++++++.
T Consensus 73 de~~~~lkh~~rg~vsmann----------gp~tn~sqffity~k--q~hldmkytvfgkvidg~etldele~l~v~~k- 139 (161)
T KOG0884|consen 73 DEYSEYLKHNVRGVVSMANN----------GPNTNGSQFFITYGK--QPHLDMKYTVFGKVIDGLETLDELEKLPVNEK- 139 (161)
T ss_pred HHHHHHHhhccceeEEcccC----------CCCCCCceEEEEecC--CCccceeEeeeeeeccchhhHHHHhhcccCcc-
Confidence 8855 589999999999998 899999999999998 99999999999999999999999999999851
Q ss_pred hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEecc
Q 021845 250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKL 291 (306)
Q Consensus 250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~ 291 (306)
..||+.++.|.+.-+-..
T Consensus 140 ------------------------tyrpl~~~~ik~itihan 157 (161)
T KOG0884|consen 140 ------------------------TYRPLNDVHIKDITIHAN 157 (161)
T ss_pred ------------------------ccccchheeeeeeEEecC
Confidence 378999999988766443
No 23
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-38 Score=270.88 Aligned_cols=161 Identities=29% Similarity=0.592 Sum_probs=148.0
Q ss_pred CCceEEEEEEeCCccCCCCCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhcc--CccccCceeEe---ecCCeEE
Q 021845 64 ITDSIFMDFSLCPTFFRPEGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSS--RSLYRNTLVHK---IFPGQFF 138 (306)
Q Consensus 64 ~~~~v~~di~i~~~~~~~~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~--~~~Y~gt~FhR---Vi~~f~i 138 (306)
++++||+|+++ +++++||++++||.|..|+|++||..||++ +..|+++.||| .+++||+
T Consensus 2 ~~~~vf~d~~~----------------~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~ 65 (167)
T KOG0865|consen 2 VNPTVFFDIAI----------------DGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMC 65 (167)
T ss_pred CCCeeeeeeee----------------cCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceee
Confidence 57899999999 789999999999999999999999999995 45699999999 3457999
Q ss_pred EcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCC
Q 021845 139 LAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCP 218 (306)
Q Consensus 139 q~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p 218 (306)
|+||. +.+++++|.++| +++|+||+|.++|..+|+|+|||. +||+|+|||||++.. ..
T Consensus 66 qggDf--t~hngtggkSiy--------~ekF~DenFilkhtgpGiLSmaNa----------gpntngsqffictak--te 123 (167)
T KOG0865|consen 66 QGGDF--TCHNGTGGKSIY--------GEKFDDENFILKHTGPGILSMANA----------GPNTNGSQFFICTAK--TE 123 (167)
T ss_pred ccCcc--cccCCccceEec--------ccccCCcCcEEecCCCCeeehhhc----------CCCccccEEEEEccc--cc
Confidence 99985 789999999997 678999999999999999999998 899999999999998 79
Q ss_pred CCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEe
Q 021845 219 QLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGEL 289 (306)
Q Consensus 219 ~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l 289 (306)
|||++|+|||+|.+||+++++|+..... ++++.++|.|.+||+|
T Consensus 124 wLdgkhVVfGkv~eGm~iv~a~e~~gs~---------------------------~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 124 WLDGKHVVFGKVKEGMDIVEAMERFGSR---------------------------NGKTSKKITIADCGQL 167 (167)
T ss_pred cccCceeEcCceEcccchhhhhhccCCc---------------------------CCcccccEEEecCCcC
Confidence 9999999999999999999999996543 5899999999999986
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.6e-36 Score=259.07 Aligned_cols=145 Identities=39% Similarity=0.667 Sum_probs=121.2
Q ss_pred ceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCcc
Q 021845 95 LGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAF 174 (306)
Q Consensus 95 ~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~ 174 (306)
+|+|+||||.+.||++|+||++||+. ++|+|+.|||++++++||+|++. ..+..+.... ..+..+++|..
T Consensus 9 ~G~i~ieL~~~~aP~~~~nF~~l~~~-~~y~g~~f~ri~~~~~i~~G~~~---~~~~~~~~~~------~~~~~~~~E~~ 78 (155)
T PF00160_consen 9 LGRIVIELFGDEAPKTVENFLRLCTS-GFYDGTKFHRIIPNFVIQGGDPT---GNGGYGREDS------TGGEPIPDEFN 78 (155)
T ss_dssp EEEEEEEEETTTSHHHHHHHHHHHHT-TSSTTEBEEEEETTTEEEESSTT---TSSSSTSEEB------TTBSCBSSSGB
T ss_pred ccCEEEEEeCCCCcHHHHhhehhhcc-cccCCceeecccccceeeeeecc---CCCCcccccc------cCccccccccc
Confidence 89999999999999999999999999 99999999999999999999972 2111111000 01234777763
Q ss_pred --cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCchhh
Q 021845 175 --LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSERI 252 (306)
Q Consensus 175 --~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~~~ 252 (306)
.+.| ++|+|+|++.+. .+++++|||||++++ .++||++|+|||+|++||+||++|++++++
T Consensus 79 ~~~~~~-~~G~v~~~~~~~--------~~~~~~sqF~I~l~~--~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~------ 141 (155)
T PF00160_consen 79 PSLLKH-RRGLVSMARSGK--------DPNSNGSQFFITLSD--APHLDGKYTVFGRVIEGMDVLDKIEAGPTD------ 141 (155)
T ss_dssp TTSSSS-STTEEEEEBSSS--------STTEBSSEEEEESSC--GGGGTTTSEEEEEEEEHHHHHHHHHTSBBT------
T ss_pred cccccc-cceeeeeccccc--------CCCCCCceEEeeccC--CCccccceeeeeEEehhHHHHHHHHCCCCC------
Confidence 4556 789999998731 488899999999998 899999999999999999999999998775
Q ss_pred hhhhhhHhhhcccccccccccCCCCCCcEEEeeeeE
Q 021845 253 QKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGE 288 (306)
Q Consensus 253 ~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~ 288 (306)
++|.++|+|.+|||
T Consensus 142 ----------------------~~p~~~v~I~~cgv 155 (155)
T PF00160_consen 142 ----------------------ERPKQDVTISSCGV 155 (155)
T ss_dssp ----------------------TEBSSTEEEEEEEE
T ss_pred ----------------------CccCCCeEEEEeEC
Confidence 39999999999997
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.6e-36 Score=255.51 Aligned_cols=143 Identities=38% Similarity=0.620 Sum_probs=123.8
Q ss_pred CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845 92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP 171 (306)
Q Consensus 92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d 171 (306)
.|+.|+|+||||.+.+|++|+||++||++ ++|+++.||||+++++||+|++. . .+..+ +.+ +..+++
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~-~~Y~~~~f~rv~~~~~iq~Gd~~--~-~~~~~-~~~--------~~~~~~ 69 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARG-GFYDGTTFHRVIPGFMIQGGDPT--G-TGGGG-SGP--------GYKFPD 69 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhc-CCcCCCEEEEEeCCCeEEECCCC--C-CCCCC-CcC--------CCccCC
Confidence 57789999999999999999999999999 89999999999999999999972 2 21111 111 356777
Q ss_pred Cccccc-CCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCch
Q 021845 172 NAFLLK-HSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPSE 250 (306)
Q Consensus 172 e~~~l~-h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~~ 250 (306)
|..... |+++|+|+|++. ++++++|||||++.+ .++||++|+|||||++|||||++|++.++++
T Consensus 70 E~~~~~~~~~~G~v~~~~~----------~~~~~~sqF~Itl~~--~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~--- 134 (146)
T cd00317 70 ENFPLKYHHRRGTLSMANA----------GPNTNGSQFFITTAP--TPHLDGKHTVFGKVVEGMDVVDKIERGDTDE--- 134 (146)
T ss_pred ccccCcCcCCCcEEEEeeC----------CCCCcccEEEEECCC--CcccCCCceEEEEEeCCHHHHHHHHcCCCCC---
Confidence 776554 888999999997 678899999999997 9999999999999999999999999999975
Q ss_pred hhhhhhhhHhhhcccccccccccCCCCCCcEEEee
Q 021845 251 RIQKYNELAAFIGDKRADTARAIWNRPLKTVYISD 285 (306)
Q Consensus 251 ~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~ 285 (306)
+++|.++|+|.+
T Consensus 135 -----------------------~~~P~~~i~I~~ 146 (146)
T cd00317 135 -----------------------NGRPIKPVTISD 146 (146)
T ss_pred -----------------------CCcCcCceEEeC
Confidence 589999999974
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=2e-35 Score=258.72 Aligned_cols=139 Identities=23% Similarity=0.296 Sum_probs=107.5
Q ss_pred CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCC--------ccCCC-----
Q 021845 92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLG--------ELHPP----- 158 (306)
Q Consensus 92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g--------~s~~~----- 158 (306)
.|+.|+|+||||.+.||+||+||++||+. +||+++.||||+++|+||+||+. +++.++ ..++.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~-g~Ydg~~FhRVi~~fviQgGdp~---~~~~~~~~~~~~~~~~~p~e~~~~ 78 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVER-GFYDGMEFHRVEGGFVVQTGDPQ---GKNPGFPDPETGKSRTIPLEIKPE 78 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHh-CCcCCCEEEEecCCcEEEecCCC---CCCCCcccccccccccccceeccc
Confidence 58899999999999999999999999999 99999999999999999999972 221111 00000
Q ss_pred CCCCCCCCCCC-----CCCcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCC-----CCCCCCCCCCcEEE
Q 021845 159 LDFLPPNTDTL-----RPNAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGP-----GPCPQLDNKNIVFG 228 (306)
Q Consensus 159 ~~~~~~~g~~~-----~de~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~-----~~~p~LDg~~tVFG 228 (306)
....+..+..+ .+++..+.|+++|+|+|||.++ .+|+++|||||++++ ++.++||++|+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~--------~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG 150 (176)
T cd01924 79 GQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEF--------DPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFG 150 (176)
T ss_pred CCCCCccCcccccccccccccccccCCCCeEEEccCCC--------CCCCccceEEEEeccccccCCCCCccCCCceEEE
Confidence 00000111122 2445567888899999999841 269999999999982 12899999999999
Q ss_pred EEEcCHHHHHHHHc
Q 021845 229 TVLQGLDVVAAIAS 242 (306)
Q Consensus 229 rVv~GmdVl~kI~~ 242 (306)
||++|||||++|+.
T Consensus 151 ~VveG~dvl~~I~~ 164 (176)
T cd01924 151 YVTDGLDILRELKV 164 (176)
T ss_pred EEecCHHHHHhhcC
Confidence 99999999999976
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-35 Score=271.91 Aligned_cols=162 Identities=27% Similarity=0.334 Sum_probs=144.4
Q ss_pred CCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCC
Q 021845 91 SPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLR 170 (306)
Q Consensus 91 ~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~ 170 (306)
.+|++|+|+|+||-+.+|.+|.||++||+- .||+.+.||.|..+|.+|.||+ .++|.||.++|+.-+.. -+..|.
T Consensus 5 ieTtlGDlvIDLf~~erP~~clNFLKLCk~-KYYN~clfh~vq~~f~aQTGDP---tGtG~GG~si~~~lyG~-q~rffe 79 (479)
T KOG0415|consen 5 IETTLGDLVIDLFVKERPRTCLNFLKLCKI-KYYNFCLFHTVQRDFTAQTGDP---TGTGDGGESIYGVLYGE-QARFFE 79 (479)
T ss_pred EEeecccEEeeeecccCcHHHHHHHHHHhH-hhcccceeeeccccceeecCCC---CCCCCCcceeeeecccc-cchhhh
Confidence 578999999999999999999999999999 9999999999999999999998 77899999998654311 133456
Q ss_pred CCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcCCCCCCc
Q 021845 171 PNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASIPTYKPS 249 (306)
Q Consensus 171 de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~~t~~~~ 249 (306)
+|.. .++|.+.|+|||++. |.|.+||||||||+.+ ...|||+|+|||+|++|||+|.||+..-+++
T Consensus 80 aE~~p~l~Hsk~G~vsmvs~----------g~n~~gSQF~iTlgen-LdyLDg~htvfGqV~EG~dtl~kiNea~vD~-- 146 (479)
T KOG0415|consen 80 AEFLPKLKHSKMGTVSMVSA----------GENLNGSQFFITLGEN-LDYLDGKHTVFGQVAEGFDTLTKINEAIVDP-- 146 (479)
T ss_pred hhhcccccccccceEEeecC----------CcccccceEEEEcccc-ccccccccceeeehhhhHHHHHHHHHHhcCC--
Confidence 6644 699999999999997 7889999999999984 8999999999999999999999999987775
Q ss_pred hhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccCCC
Q 021845 250 ERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPN 294 (306)
Q Consensus 250 ~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~~~ 294 (306)
.++|+++|+|.+.-+|.++.+
T Consensus 147 ------------------------~~rPykdIRI~HTiiLdDPFd 167 (479)
T KOG0415|consen 147 ------------------------KNRPYKDIRIKHTIILDDPFD 167 (479)
T ss_pred ------------------------CCCcccceeeeeeEEecCCCC
Confidence 599999999999999999744
No 28
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-35 Score=273.88 Aligned_cols=165 Identities=22% Similarity=0.322 Sum_probs=146.1
Q ss_pred CCCCCCcCCCCccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCC
Q 021845 82 EGTDPTLCSSPVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDF 161 (306)
Q Consensus 82 ~~~~~~~~~~~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~ 161 (306)
++.-++.|+..|+.|.|.||||+..||++|.||++||.. +||+|+.|||++|||.+||||+ .++|+||++||
T Consensus 8 EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGe-gyy~nt~fhrlvp~f~~Qggdp---~~~gtGgesiy---- 79 (439)
T KOG0885|consen 8 EPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLE-GYYDNTEFHRLVPGFLVQGGDP---TGTGTGGESIY---- 79 (439)
T ss_pred CCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHh-ccccCceeeeeccchhcccCCC---CCCCCCccccc----
Confidence 334456666788889999999999999999999999999 9999999999999999999998 88999999998
Q ss_pred CCCCCCCCCCCcc-cccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEE-cCHHHHHH
Q 021845 162 LPPNTDTLRPNAF-LLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVL-QGLDVVAA 239 (306)
Q Consensus 162 ~~~~g~~~~de~~-~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv-~GmdVl~k 239 (306)
|..|.+|.. .+++.++|+|+|||. +.+.||||||+||++ ++|||++|++||+|+ +-.-.+.+
T Consensus 80 ----g~~fadE~h~Rlrf~rrGlvgmana----------~~~~ngsqFfftl~~--~~el~nk~tiFGKVtGdtIYn~lr 143 (439)
T KOG0885|consen 80 ----GRPFADEFHPRLRFNRRGLVGMANA----------GNDDNGSQFFFTLGD--TPELNNKHTIFGKVTGDTIYNMLR 143 (439)
T ss_pred ----cccchhhcCcceeeeccceeeeccc----------CCCCCCceEEEEecC--ChHhcccCceeeeecchhhhhhhh
Confidence 567888865 689999999999998 457799999999998 999999999999999 46778899
Q ss_pred HHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEeccCCCCC
Q 021845 240 IASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELKLKPNAT 296 (306)
Q Consensus 240 I~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~~~~~~~ 296 (306)
|..+.++. ++||..+-+|.+|.|+..++++.
T Consensus 144 i~e~eida--------------------------~~Rp~~p~kI~s~EV~~npFdDI 174 (439)
T KOG0885|consen 144 ISEVEIDA--------------------------DDRPVDPPKIKSVEVLINPFDDI 174 (439)
T ss_pred hccccccc--------------------------ccCCCCccceeeeEeecCchhhc
Confidence 99998874 58999999999999998855443
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00015 Score=71.14 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=115.3
Q ss_pred CCcCCCCccce----eEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCC
Q 021845 86 PTLCSSPVPLG----RLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDF 161 (306)
Q Consensus 86 ~~~~~~~t~~G----rIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~ 161 (306)
++-|.-.+..| -|.|+|+.+-.|.-++-|..+|.. .++++..|-||.+.+++|.||. +...+ .+|-. ++
T Consensus 98 Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~-~~fkklH~sPV~~i~y~qa~Ds-~vSiD-~~gmV----Ey 170 (558)
T KOG0882|consen 98 PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD-GYFKKLHFSPVKKIRYNQAGDS-AVSID-ISGMV----EY 170 (558)
T ss_pred CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc-ceecccccCceEEEEeeccccc-eeecc-cccee----Ee
Confidence 33444556667 999999999999999999999999 9999999999999999999997 22222 12211 11
Q ss_pred CCCC-CCCCCC--CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHH
Q 021845 162 LPPN-TDTLRP--NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVA 238 (306)
Q Consensus 162 ~~~~-g~~~~d--e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~ 238 (306)
+... ...|++ .++.++|.. -++..... ...-.+-+|++.... .+-+..+..|||+|.+|-++++
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~eT-dLy~f~K~----------Kt~pts~Efsp~g~q--istl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHET-DLYGFPKA----------KTEPTSFEFSPDGAQ--ISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ecCCCcccCccccccccccccc-hhhccccc----------ccCccceEEccccCc--ccccCcccEEEEEEeccchhhh
Confidence 1111 112333 466788885 66666653 112234588888887 8888899999999999999999
Q ss_pred HHHcCCCCCCchhhhhhhhhHhhhcccccccccccCCCCCCcEEEeeeeEec
Q 021845 239 AIASIPTYKPSERIQKYNELAAFIGDKRADTARAIWNRPLKTVYISDCGELK 290 (306)
Q Consensus 239 kI~~~~t~~~~~~~~~~~~~a~~~gd~~a~~~~~~~~~P~~~V~I~~cg~l~ 290 (306)
.|....++. ...|+.++.|.+.....
T Consensus 238 eiDE~~t~~--------------------------~~q~ks~y~l~~VelgR 263 (558)
T KOG0882|consen 238 EIDEVLTDA--------------------------QYQPKSPYGLMHVELGR 263 (558)
T ss_pred hhhccchhh--------------------------hhccccccccceeehhh
Confidence 999998874 45677777777765543
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.47 E-value=0.074 Score=53.37 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=63.5
Q ss_pred eeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCccc
Q 021845 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFL 175 (306)
Q Consensus 96 GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~ 175 (306)
=.+.+||..+ +|..++.|+.+.+. +.++ +-+...-| |- | ..-. +...+.|++.
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~~-G~~~---Vd~~tsTf-i~--d------~~L~-------------g~~~p~En~~ 253 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALMED-GTFR---VDYRTSTF-IS--D------DSLR-------------GLDKPEENIE 253 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHhC-CeEE---Eeeeecce-Ee--c------cccc-------------CccCCccccC
Confidence 3788898776 99999999999998 4332 00111111 10 0 0001 2233445442
Q ss_pred ccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHc
Q 021845 176 LKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS 242 (306)
Q Consensus 176 l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~ 242 (306)
..++|+|.+.+.++ + ...-||-..+ -.+. -.|+|+|||++|||+++--+.
T Consensus 254 --~R~rGtVTVRn~G~----------G--~G~VYIYred-r~ss--~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 254 --KRRRGAVTVRNSGV----------G--EGRVYIYRED-RPSS--LSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred --cccceeEEEEeecc----------C--ceeEEEEcCC-CCCC--cccceeEEEecceeeeecccC
Confidence 23469999998742 2 3468898875 2333 479999999999999875443
No 31
>PRK00969 hypothetical protein; Provisional
Probab=95.36 E-value=0.078 Score=53.34 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=63.7
Q ss_pred eeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCccc
Q 021845 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNAFL 175 (306)
Q Consensus 96 GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~~~ 175 (306)
=.+.+||..+ +|..++.|+.+.+. +.++ +-+...-| |- | ..-. +...+.|++.
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~~-G~f~---Vd~~tstf-I~--d------~~L~-------------g~~~p~En~~ 256 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLED-GTFE---VDFETSTF-IA--D------DRLQ-------------GLKIPEENFE 256 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHhC-CeEE---Eeeeecce-Ee--e------cccc-------------CccCCccccC
Confidence 3788898877 99999999999998 4332 00111111 00 0 0001 2334445543
Q ss_pred ccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHc
Q 021845 176 LKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS 242 (306)
Q Consensus 176 l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~ 242 (306)
- .++|+|.+.+.++ + ...-||...+ -.+. -.|+|+|+|++|||+++--++
T Consensus 257 ~--R~~GtVTVRt~G~----------g--~G~vYIyred-r~ss--~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 257 P--RRRGTVTVRTAGV----------G--VGKVYIYRED-RPSS--LSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred c--cccceEEEEeecc----------C--ceeEEEECCC-CCCC--ccceeEEEEecceeeeecccC
Confidence 2 2469999998742 2 3468998875 2233 479999999999999865443
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.00 E-value=0.15 Score=51.18 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=31.2
Q ss_pred eeEEEEecCCCCchHHHHHHHHhccC-ccccCceeEeecCCeEEEcCC
Q 021845 96 GRLIIGLYGHLAPITVSNFKAMCSSR-SLYRNTLVHKIFPGQFFLAGR 142 (306)
Q Consensus 96 GrIvIeL~~d~aP~tv~NF~~L~~~~-~~Y~gt~FhRVi~~f~iq~Gd 142 (306)
.-|.|+||.+.||+++.-|+++.--. .--=-..+|=..++..+.=|+
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~ 422 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGN 422 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccC
Confidence 47899999999999999999875310 011124556666775444443
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.1 Score=51.03 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=65.2
Q ss_pred eeEEEEecCCCCchHHHHHHHHhccCccccCceeEeec--CCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCc
Q 021845 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIF--PGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRPNA 173 (306)
Q Consensus 96 GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi--~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~de~ 173 (306)
-.+.+||-.+ +|+.++.|+.|... +.+ ||- -+-++. +. +. + ....+.|+
T Consensus 203 Ty~eve~s~n-sP~saEH~lalmed-G~l------ri~~~tntfis--~~-----------~l---q-----~~~~~~en 253 (512)
T COG4070 203 TYFEVELSRN-SPKSAEHFLALMED-GTL------RIDVTTNTFIS--DD-----------TL---Q-----EEKVPEEN 253 (512)
T ss_pred EEEEEEeCCC-CchhHHHHHHHhhc-ceE------EEEEeccceee--cc-----------cc---c-----cccCChhh
Confidence 4778888776 99999999999987 321 221 111111 10 11 1 24456667
Q ss_pred ccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHc
Q 021845 174 FLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIAS 242 (306)
Q Consensus 174 ~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~ 242 (306)
+.++. +|.++..|.+ -+ ...-||.-.+ ..+.| .|.|.|||++||++++--..
T Consensus 254 ~d~Re--rG~iTvRn~G----------vg--eGrvYIyRed-R~ss~--sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 254 FDLRE--RGAITVRNVG----------VG--EGRVYIYRED-RPSSL--SHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhh--cceEEEEeee----------cc--cceEEEEecC-CCCcc--ccceeeeeecceEEEEeccc
Confidence 65553 6999999873 22 3467888775 23343 68999999999998875543
No 34
>PRK00969 hypothetical protein; Provisional
Probab=91.86 E-value=1.1 Score=45.26 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=66.4
Q ss_pred CccceeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCeEEEcCCCCCcCCCCCCCccCCCCCCCCCCCCCCCC
Q 021845 92 PVPLGRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQFFLAGRQGLSRRDSKLGELHPPLDFLPPNTDTLRP 171 (306)
Q Consensus 92 ~t~~GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f~iq~Gd~~~~~~~g~~g~s~~~~~~~~~~g~~~~d 171 (306)
.|+.|.|+|||. .....+.-|+.-++. |.|...|=--++ -+..|-. ... +..
T Consensus 56 kTtkG~i~Iel~--~~~~~~~~w~e~yk~---~e~~~i~W~s~~-~vAfGp~--~s~--------------------l~p 107 (508)
T PRK00969 56 KTTKGEIVIELT--EENESVDFWLENYKE---FEGKSLRWTSRS-AVAFGPF--ESD--------------------LEP 107 (508)
T ss_pred EccCceEEEEEc--cCcchhhHHHHhHHh---hcCCceEecccc-ceeEccc--ccC--------------------ccc
Confidence 688999999999 455667777776665 666666544443 4445532 100 111
Q ss_pred CcccccCCCceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCCCCCCCCCCcEEEEEEcCHHHHHHHHcC
Q 021845 172 NAFLLKHSRGGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGPCPQLDNKNIVFGTVLQGLDVVAAIASI 243 (306)
Q Consensus 172 e~~~l~h~~~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~~p~LDg~~tVFGrVv~GmdVl~kI~~~ 243 (306)
+.-.. ...++-|.+.-. |-+...+.+.|...+....+-=..--+||+|+.|..+|+++..-
T Consensus 108 ~~~~~-~y~r~DV~lg~~----------G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~ 168 (508)
T PRK00969 108 SREEY-EYERWDVVLSLS----------GFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDG 168 (508)
T ss_pred ccCcc-eeecccEEEEcc----------CCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCC
Confidence 11111 223577777765 44545666666666411111100117999999999999998874
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=0.87 Score=44.75 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=31.9
Q ss_pred eeEEEEecCCCCchHHHHHHHHhcc-CccccCceeEeecCC--eEEEcCCC
Q 021845 96 GRLIIGLYGHLAPITVSNFKAMCSS-RSLYRNTLVHKIFPG--QFFLAGRQ 143 (306)
Q Consensus 96 GrIvIeL~~d~aP~tv~NF~~L~~~-~~~Y~gt~FhRVi~~--f~iq~Gd~ 143 (306)
--|.||||.+.||+++.-|+++..- ..---..+.|-..+| .++.-|+.
T Consensus 376 kiieIELyed~APrSv~yFRr~t~l~~kpVGkL~Vhfay~d~~~vmfegn~ 426 (512)
T COG4070 376 KIIEIELYEDRAPRSVWYFRRSTGLKTKPVGKLKVHFAYDDTYLVMFEGNA 426 (512)
T ss_pred hEEEEEecCCCCchhhHHHHhhcccccccccceEEEEEeCCceEEEEcCCh
Confidence 3689999999999999999998652 011123456666666 33444443
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=86.27 E-value=3.7 Score=35.17 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=29.0
Q ss_pred eeEEEEecCCCCchHHHHHHHHhccCccccCceeEeecCCe--EEEcCC
Q 021845 96 GRLIIGLYGHLAPITVSNFKAMCSSRSLYRNTLVHKIFPGQ--FFLAGR 142 (306)
Q Consensus 96 GrIvIeL~~d~aP~tv~NF~~L~~~~~~Y~gt~FhRVi~~f--~iq~Gd 142 (306)
-.++.+|..|.||+||+-|.++ .=|.+..+|-..-|. ++.-++
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~----LP~~~~~~HarwSG~ei~~~l~~ 52 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEA----LPLKGKVIHARWSGEEIWIPLPD 52 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH------EEEE-EE-SSSSSEEEEEEE-
T ss_pred eEEEEEEcccCChHHHHHHHHh----CCCCCcEEEEEEECcEEEEECCC
Confidence 4789999999999999999987 347777777766553 444444
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=21.77 E-value=91 Score=25.43 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=28.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCccceEEEEcCCCC-----CCCCCCCCcEEEEEEcCHHHHHHHHc
Q 021845 181 GGVVSLCLSENDDDPDVKLDPHYRNVEFLITTGPGP-----CPQLDNKNIVFGTVLQGLDVVAAIAS 242 (306)
Q Consensus 181 ~G~lsma~~~~~~~~~~~~~p~t~gSqFfItl~~~~-----~p~LDg~~tVFGrVv~GmdVl~kI~~ 242 (306)
.|-|+.... +.-|.|-.++.+ .+.+-....++|||++|.+.++++..
T Consensus 62 ~GDi~Yw~p---------------g~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 62 AGDIAYWPP---------------GGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp TTEEEEECC---------------CTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred CceEEEeCC---------------CCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 588887654 223777777611 12455678999999999988877754
Done!