Query 021846
Match_columns 306
No_of_seqs 329 out of 1704
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 1.1E-37 3.7E-42 291.4 4.7 200 99-304 8-212 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 5.9E-37 2E-41 283.2 5.3 196 103-304 3-203 (283)
3 3h90_A Ferrous-iron efflux pum 97.7 1.4E-05 4.7E-10 73.0 3.1 92 104-203 112-203 (283)
4 3j1z_P YIIP, cation efflux fam 97.6 2.1E-05 7.1E-10 72.8 2.9 92 104-203 121-212 (306)
5 2jp3_A FXYD domain-containing 44.8 33 0.0011 24.0 4.4 30 163-193 9-38 (67)
6 2zxe_G FXYD10, phospholemman-l 30.8 63 0.0022 23.0 4.1 30 162-192 10-39 (74)
7 3m73_A Tellurite resistance pr 23.6 2.4E+02 0.0081 25.1 7.8 15 270-284 109-123 (314)
8 2jo1_A Phospholemman; FXYD1, N 22.7 77 0.0026 22.3 3.2 31 163-194 8-38 (72)
9 2h3o_A MERF; membrane protein, 21.8 1.1E+02 0.0038 20.9 3.9 27 258-284 17-48 (61)
10 2c5k_P Vacuolar protein sortin 18.9 16 0.00055 20.7 -0.7 14 57-70 12-25 (26)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=1.1e-37 Score=291.42 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=182.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHH
Q 021846 99 ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILV 178 (306)
Q Consensus 99 ~~~~r~al~isl~~Nl~l~i~kl~a~~~sgSlaLiAdaldsl~D~~s~~i~l~~~~~~~k~~~~~~P~G~~R~E~l~~li 178 (306)
+...|++.++++++|++++++|+++|+.|||+||+||++||+.|++++++++++.+.++||++.+|||||+|+|++++++
T Consensus 8 ~~~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~ 87 (306)
T 3j1z_P 8 DFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALA 87 (306)
T ss_dssp TCCSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhHHH
Q 021846 179 FASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVIT 254 (306)
Q Consensus 179 ~s~~m~~~~~~ii~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~vv~~~l~~~~~~----~~s~~l~a~a~~~~~Dv~~ 254 (306)
++++++++++++++|+++++++|++. ....++++++++++++|..+++++++ .+|.++++++.|+++|+++
T Consensus 88 ~~~~l~~~~~~i~~eai~~l~~p~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~ 162 (306)
T 3j1z_P 88 QSAFIMGSAFLLLFYGGERLLNPSPV-----ENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFL 162 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCG-----GGTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhheecCCCc-----cccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhh
Confidence 99999999999999999999998762 33456778888999999999998865 4689999999999999999
Q ss_pred HHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021846 255 NIIGLVAVLLANYID-DWMDPVGAIIVSQISNSLVFSCACVHLLVFMWGIE 304 (306)
Q Consensus 255 n~~~i~~~~l~~~~~-~~iDpi~aiiIa~~i~~~~~~~~~~~~~~l~~~~~ 304 (306)
|++ ++.++++.+++ ||+||+++++|++++++.+++.++++...||++.+
T Consensus 163 s~~-vli~~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~ 212 (306)
T 3j1z_P 163 NAA-VLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDREL 212 (306)
T ss_dssp CTT-CCCTTSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhH-HHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 984 45566666677 79999999999999999999999999999998764
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=5.9e-37 Score=283.21 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 021846 103 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 182 (306)
Q Consensus 103 r~al~isl~~Nl~l~i~kl~a~~~sgSlaLiAdaldsl~D~~s~~i~l~~~~~~~k~~~~~~P~G~~R~E~l~~li~s~~ 182 (306)
|+++++++++|++++++|+++|+.+||+||+||++||+.|++++++.+++.+.++||++++|||||+|+|++++++++++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhHHHHHHH
Q 021846 183 MATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIG 258 (306)
Q Consensus 183 m~~~~~~ii~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~vv~~~l~~~~~~----~~s~~l~a~a~~~~~Dv~~n~~~ 258 (306)
++.+++++++||++++++|++. ....++++++++++++|.+++++++| .+|+++++++.|+++|+++|++
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~-----~~~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~- 156 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPM-----TDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGA- 156 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCC-----CCCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSC-
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999998762 22345788899999999999999865 4799999999999999999984
Q ss_pred HHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021846 259 LVAVLLANYID-DWMDPVGAIIVSQISNSLVFSCACVHLLVFMWGIE 304 (306)
Q Consensus 259 i~~~~l~~~~~-~~iDpi~aiiIa~~i~~~~~~~~~~~~~~l~~~~~ 304 (306)
++.++++.+++ +|+||+++++|++++++.+++.++++..+||++.+
T Consensus 157 vli~~~~~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~ 203 (283)
T 3h90_A 157 ILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRAL 203 (283)
T ss_dssp SCSSSCSCSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44455556777 59999999999999999999999999999998764
No 3
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=97.71 E-value=1.4e-05 Score=72.99 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 021846 104 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 183 (306)
Q Consensus 104 ~al~isl~~Nl~l~i~kl~a~~~sgSlaLiAdaldsl~D~~s~~i~l~~~~~~~k~~~~~~P~G~~R~E~l~~li~s~~m 183 (306)
.+..+++++|.+++......+...+|.++.||+.|.+.|+++++.++++...+ .+|+..++|++++++++++
T Consensus 112 ~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i 183 (283)
T 3h90_A 112 IVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYI 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999998877664332 2367778999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 021846 184 ATLGLQIILESLRTLVSNED 203 (306)
Q Consensus 184 ~~~~~~ii~esi~~Li~~~~ 203 (306)
+..++.+++++++.|++...
T Consensus 184 ~~~~~~l~~~s~~~Ll~~~~ 203 (283)
T 3h90_A 184 LYSALRMGYEAVQSLLDRAL 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998765
No 4
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=97.62 E-value=2.1e-05 Score=72.77 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 021846 104 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 183 (306)
Q Consensus 104 ~al~isl~~Nl~l~i~kl~a~~~sgSlaLiAdaldsl~D~~s~~i~l~~~~~~~k~~~~~~P~G~~R~E~l~~li~s~~m 183 (306)
.+..++++.|++++.++...+...+|.++.||+.|...|+++++.++++.-.+. +|+..++|++++++++++
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I 192 (306)
T 3j1z_P 121 VVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYI 192 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHH
T ss_pred hhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHH
Confidence 456788889999999999999999999999999999999999988877654432 467778999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 021846 184 ATLGLQIILESLRTLVSNED 203 (306)
Q Consensus 184 ~~~~~~ii~esi~~Li~~~~ 203 (306)
+..++.+++++++.|++...
T Consensus 193 ~~~~~~l~~~s~~~Ll~~~~ 212 (306)
T 3j1z_P 193 GQQAFDLGYRSIQALLDREL 212 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 99999999999999998765
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=44.83 E-value=33 Score=23.97 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=20.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021846 163 QYPIGKKRMQPLGILVFASVMATLGLQIILE 193 (306)
Q Consensus 163 ~~P~G~~R~E~l~~li~s~~m~~~~~~ii~e 193 (306)
.|.|-|..+. +++++++.+++.+|+.++..
T Consensus 9 pF~YDY~tLR-igGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 9 PFYYDWESLQ-LGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp GGGGGGHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CcccchHHhe-ecchhhHHHHHHHHHHHHHc
Confidence 4445555544 57788888888888877654
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=30.75 E-value=63 Score=22.96 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=20.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021846 162 YQYPIGKKRMQPLGILVFASVMATLGLQIIL 192 (306)
Q Consensus 162 ~~~P~G~~R~E~l~~li~s~~m~~~~~~ii~ 192 (306)
..|.|-|..+. +++++++.+++.+|+.++.
T Consensus 10 dpF~YDY~tLR-igGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDYYRLR-VVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHhe-eccchhHHHHHHHHHHHHH
Confidence 34445555543 5778888888888887654
No 7
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=23.58 E-value=2.4e+02 Score=25.08 Aligned_cols=15 Identities=20% Similarity=0.736 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHH
Q 021846 270 DWMDPVGAIIVSQIS 284 (306)
Q Consensus 270 ~~iDpi~aiiIa~~i 284 (306)
||+|.+..++.+.++
T Consensus 109 W~~~~~l~l~~~~~~ 123 (314)
T 3m73_A 109 IWIGTIGQLLFSTLR 123 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777666554
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.71 E-value=77 Score=22.34 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=20.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021846 163 QYPIGKKRMQPLGILVFASVMATLGLQIILES 194 (306)
Q Consensus 163 ~~P~G~~R~E~l~~li~s~~m~~~~~~ii~es 194 (306)
.|.|-|..+. +++++++.+++++|+.++...
T Consensus 8 PF~YDY~tLR-iGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 8 PFTYDYQSLQ-IGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp GGGCSTHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHhh-ccchHHHHHHHHHHHHHHHcC
Confidence 3445555543 577888888888888776543
No 9
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=21.81 E-value=1.1e+02 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhh-hhhh----HHHHHHHHHHH
Q 021846 258 GLVAVLLANYID-DWMD----PVGAIIVSQIS 284 (306)
Q Consensus 258 ~i~~~~l~~~~~-~~iD----pi~aiiIa~~i 284 (306)
+++.|..|.... .|+| |..+.+|++-+
T Consensus 17 vil~G~~Glsa~~~wLd~vl~P~l~~figl~~ 48 (61)
T 2h3o_A 17 VILLGVVGLSALTGYLDYVLLPALAIFIGLTI 48 (61)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332 5999 98888884433
No 10
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=18.94 E-value=16 Score=20.66 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=8.8
Q ss_pred cccchhhchhhhHH
Q 021846 57 PEDNVAEYYQQQVQ 70 (306)
Q Consensus 57 ~~~~l~~fy~~q~~ 70 (306)
+.+.+++||+-+++
T Consensus 12 KR~lLkeyY~L~~~ 25 (26)
T 2c5k_P 12 RRLLLREFYNLENX 25 (26)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHhhhcc
Confidence 44688999987765
Done!