RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021846
         (306 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 98.3 bits (244), Expect = 3e-25
 Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 1/183 (0%)

Query: 99  ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQT 158
            R  + A   +     +L   K++A   +GS++I+A+ +DSL+D+ +             
Sbjct: 2   GRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQ 61

Query: 159 PNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGI 218
           P    +  G  + + L  L  +  ++   L + L  ++ L+S     +        +V +
Sbjct: 62  PADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 121

Query: 219 MLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAI 278
           + ++ LV        R   ++ V+A    +  DV+ N   L+A+ L+ Y     D + A+
Sbjct: 122 ICTIILV-SFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 180

Query: 279 IVS 281
            + 
Sbjct: 181 GIG 183


>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia
           coli [TaxId: 562]}
          Length = 314

 Score = 29.0 bits (64), Expect = 0.68
 Identities = 29/208 (13%), Positives = 55/208 (26%), Gaps = 40/208 (19%)

Query: 61  VAEYYQQQVQMLEGFNEMDALAER------------GFVPG---------MTKEERENLA 99
           +  +YQQ +Q     +    L +R            GF P              E     
Sbjct: 9   LNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSL 68

Query: 100 RSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTP 159
               + +      +   F  +V   ++     +I            G        + +  
Sbjct: 69  IDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIG---------FGGR--VLGNDTPKYL 117

Query: 160 NPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIM 219
           N  +  I  K  Q  G+       A     +++E         D   L +    + V  +
Sbjct: 118 NSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYM------DVVALAQYGINYAVASL 171

Query: 220 LSVTLVKLLLVVYCRAFTNEIVKAYAQD 247
            + T    +        TN ++  Y  D
Sbjct: 172 GTSTTADHIQ--LLFRATNNVICCYDGD 197


>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId:
           4844]}
          Length = 222

 Score = 28.6 bits (63), Expect = 0.81
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 50  DCLGVLGPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMT 91
           DC       +++ +Y+Q+ + +   +N   A +  G  PG T
Sbjct: 119 DCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGT 160


>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes
           lepiniana) [TaxId: 282652]}
          Length = 206

 Score = 27.4 bits (60), Expect = 1.7
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 59  DNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTK 92
                Y+++ +++   +N   AL + G V   +K
Sbjct: 111 KGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSK 144


>d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 101

 Score = 26.0 bits (57), Expect = 2.5
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 91  TKEERENLARSETLAIRISNVANMVLFAAKVYASVKSG 128
           T  + + L    TL I +S+V N+ L     +      
Sbjct: 6   THYDLKELRAGTTLEISLSSVNNVRLMTGANFQRFTEL 43


>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed
           (Calystegia sepium) [TaxId: 47519]}
          Length = 207

 Score = 26.7 bits (58), Expect = 3.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 60  NVAEYYQQQVQMLEGFNEMDALAERGFVPGMTKE 93
           N  EY+   + +   +N  + L+E G++P  T E
Sbjct: 114 NQYEYFSTTLMLYFKYNISEILSESGYLPSNTAE 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,082,102
Number of extensions: 47311
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 11
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)