BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021847
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
 pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
          Length = 420

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 19/120 (15%)

Query: 18  FAIAAGIKQSDLVDKMVTKFLS-------SNFSVMLFHYDGVVDQWKTFEWCDRVIHVSA 70
           F I A     D V+     FL+       +++S  ++H DG  D         R+ H++A
Sbjct: 205 FDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKD---------RLAHLNA 255

Query: 71  ANQTKWWFAKRFLHPDI---VAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPAL 127
             Q ++W ++ F    I   VA Y   +   +D G+E        S    EG +  +P L
Sbjct: 256 DFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGL 315


>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
 pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
          Length = 721

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 46  LFHYD-----GVVDQWKTFEWCDRVIHVSAANQTKWWFAKRFLHPD 86
           LF YD     G + Q  +F + D V+HV  A   +WW A+R +H D
Sbjct: 433 LFDYDKTKDCGFLSQALSFRFGD-VLHVIDAGDEEWWQARR-VHSD 476


>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment
          Of Psd-95
 pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
 pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
          Length = 301

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 38 LSSNFSV-MLFHYD-----GVVDQWKTFEWCDRVIHVSAANQTKWWFAKRFLHPD 86
          ++S F +  LF YD     G + Q  +F + D V+HV  A   +WW A+R +H D
Sbjct: 4  MASGFYIRALFDYDKTKDCGFLSQALSFRFGD-VLHVIDAGDEEWWQARR-VHSD 56


>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
          Length = 295

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 46 LFHYD-----GVVDQWKTFEWCDRVIHVSAANQTKWWFAKRFLHPD 86
          LF YD     G + Q  +F + D V+HV  A   +WW A+R +H D
Sbjct: 7  LFDYDKTKDCGFLSQALSFRFGD-VLHVIDAGDEEWWQARR-VHSD 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,567,321
Number of Sequences: 62578
Number of extensions: 382283
Number of successful extensions: 732
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 4
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)