BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021847
         (306 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|H3K2Y6|MED12_ARATH Mediator of RNA polymerase II transcription subunit 12
           OS=Arabidopsis thaliana GN=MED12 PE=1 SV=1
          Length = 2235

 Score = 31.6 bits (70), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 106 FNPQKYV-SIVKSEGLEISQPALDPAKSEVHHQITARSQRSIVH 148
           FNP  YV  ++ S  +++ QPA+DP +   HH+I  +     VH
Sbjct: 676 FNPIAYVRQLIVSGMIDVIQPAVDPERRMRHHRILKQLPGCFVH 719


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) GN=rep
            PE=1 SV=1
          Length = 7176

 Score = 31.2 bits (69), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 36   KFLSSNFSVMLFHYDGVVDQWKTFEWCDRVIHVSAANQTKWWFAKRFLHPDIVAEYSYIF 95
            +FL+ +FS+M+   DGVV     F     + ++SA  Q  ++    F+     +E     
Sbjct: 5197 EFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFM-----SEAKCWV 5251

Query: 96   LWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAK 131
              D + G  +F  Q +  +VK +G E+  P  DP++
Sbjct: 5252 ETDIEKGPHEFCSQ-HTMLVKMDGDEVYLPYPDPSR 5286


>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) GN=rep
            PE=3 SV=1
          Length = 7124

 Score = 31.2 bits (69), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 36   KFLSSNFSVMLFHYDGVVDQWKTFEWCDRVIHVSAANQTKWWFAKRFLHPDIVAEYSYIF 95
            +FL+ +FS+M+   DGVV     F     + ++SA  Q  ++    F+     +E     
Sbjct: 5145 EFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFM-----SEAKCWV 5199

Query: 96   LWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAK 131
              D + G  +F  Q +  +VK +G E+  P  DP++
Sbjct: 5200 ETDIEKGPHEFCSQ-HTMLVKMDGDEVYLPYPDPSR 5234


>sp|Q60574|HPT_MUSCR Haptoglobin OS=Mus caroli GN=Hp PE=2 SV=1
          Length = 347

 Score = 31.2 bits (69), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 32/147 (21%)

Query: 104 EDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDKNSTA 163
           +D  P   + + K++ +EI +  L P  S V   +    QR +V  R     L  K+  A
Sbjct: 156 KDIAPTLTLYVGKNQLVEIEKVILHPNHSVVDIGLIKLKQRVLVTERVMPICLPSKDYVA 215

Query: 164 PPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEY- 222
           P   G++                          WG +    +    DR K V +  A+  
Sbjct: 216 PGRVGYVS------------------------GWGRNQDFRFT---DRLKYVMLPVADQD 248

Query: 223 --VVHYGRPTLGVPEKKTDLLEIGFSP 247
             VVHY + T  VPEKK     +G  P
Sbjct: 249 KCVVHYEKST--VPEKKNFTSPVGVQP 273


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,947,457
Number of Sequences: 539616
Number of extensions: 4703033
Number of successful extensions: 9328
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9327
Number of HSP's gapped (non-prelim): 6
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)