Query 021847
Match_columns 306
No_of_seqs 150 out of 156
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:07:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 1E-119 2E-124 847.5 24.1 266 1-293 26-293 (294)
2 cd04185 GT_2_like_b Subfamily 93.9 0.17 3.6E-06 43.1 6.2 99 89-229 78-176 (202)
3 TIGR01556 rhamnosyltran L-rham 92.7 0.45 9.7E-06 43.3 7.3 127 89-226 72-201 (281)
4 cd02510 pp-GalNAc-T pp-GalNAc- 92.6 2.2 4.8E-05 39.3 11.9 135 89-228 82-227 (299)
5 cd04186 GT_2_like_c Subfamily 92.4 0.32 7E-06 38.9 5.4 91 90-226 74-165 (166)
6 cd02526 GT2_RfbF_like RfbF is 89.4 1.3 2.7E-05 38.4 6.6 123 90-226 75-204 (237)
7 PF13641 Glyco_tranf_2_3: Glyc 87.5 1.1 2.4E-05 38.6 5.0 195 15-226 2-210 (228)
8 cd02520 Glucosylceramide_synth 86.7 0.77 1.7E-05 39.4 3.6 164 15-226 2-176 (196)
9 PF01762 Galactosyl_T: Galacto 86.4 1.6 3.5E-05 38.3 5.5 175 2-209 7-186 (195)
10 cd02525 Succinoglycan_BP_ExoA 86.2 1.5 3.2E-05 37.8 5.1 39 89-127 80-118 (249)
11 cd04195 GT2_AmsE_like GT2_AmsE 84.9 0.54 1.2E-05 39.7 1.7 116 89-224 79-199 (201)
12 cd06442 DPM1_like DPM1_like re 81.0 0.66 1.4E-05 39.7 0.8 35 89-123 77-111 (224)
13 PLN02726 dolichyl-phosphate be 80.4 2.4 5.1E-05 37.8 4.1 109 12-125 7-128 (243)
14 cd06433 GT_2_WfgS_like WfgS an 80.2 2.5 5.4E-05 34.8 4.0 36 89-124 74-110 (202)
15 COG1216 Predicted glycosyltran 79.4 8.1 0.00017 36.2 7.5 138 91-232 85-226 (305)
16 PF13632 Glyco_trans_2_3: Glyc 78.6 2.6 5.6E-05 35.8 3.6 38 93-130 1-38 (193)
17 cd06437 CESA_CaSu_A2 Cellulose 78.5 1 2.2E-05 39.3 1.2 127 89-226 86-213 (232)
18 cd06434 GT2_HAS Hyaluronan syn 71.0 2.2 4.7E-05 36.9 1.3 41 89-129 76-116 (235)
19 PF00535 Glycos_transf_2: Glyc 70.6 3.1 6.8E-05 32.7 2.0 38 89-126 77-114 (169)
20 cd06421 CESA_CelA_like CESA_Ce 70.2 3.6 7.8E-05 35.3 2.5 124 89-226 83-211 (234)
21 cd06435 CESA_NdvC_like NdvC_li 63.9 3.8 8.3E-05 35.6 1.4 37 90-126 84-120 (236)
22 cd04188 DPG_synthase DPG_synth 63.1 2.3 5.1E-05 36.6 -0.1 36 89-124 81-116 (211)
23 cd06913 beta3GnTL1_like Beta 1 61.6 8.5 0.00018 33.3 3.2 31 89-119 83-113 (219)
24 PF09258 Glyco_transf_64: Glyc 57.9 13 0.00028 34.8 3.9 95 23-118 8-103 (247)
25 PF12621 DUF3779: Phosphate me 53.8 16 0.00034 29.7 3.3 52 80-136 34-87 (95)
26 PF09828 Chrome_Resist: Chroma 52.1 11 0.00023 33.2 2.1 55 76-137 15-87 (135)
27 PTZ00260 dolichyl-phosphate be 49.9 12 0.00026 36.1 2.3 106 14-124 70-199 (333)
28 cd06423 CESA_like CESA_like is 47.5 11 0.00025 29.3 1.5 37 90-126 78-115 (180)
29 cd00761 Glyco_tranf_GTA_type G 47.2 16 0.00034 27.7 2.2 22 90-111 77-98 (156)
30 cd04184 GT2_RfbC_Mx_like Myxoc 46.7 15 0.00033 30.7 2.3 37 89-125 82-119 (202)
31 cd04192 GT_2_like_e Subfamily 46.5 15 0.00033 31.1 2.3 37 89-125 81-117 (229)
32 PF13506 Glyco_transf_21: Glyc 44.1 15 0.00033 32.1 2.0 122 89-226 30-153 (175)
33 cd04196 GT_2_like_d Subfamily 42.0 23 0.00049 29.7 2.6 46 176-226 158-203 (214)
34 cd06427 CESA_like_2 CESA_like_ 41.4 25 0.00055 31.1 2.9 38 89-126 83-122 (241)
35 cd06439 CESA_like_1 CESA_like_ 41.2 15 0.00033 32.2 1.4 40 89-128 108-147 (251)
36 cd02522 GT_2_like_a GT_2_like_ 39.5 21 0.00045 30.4 2.0 40 89-128 71-110 (221)
37 TIGR03469 HonB hopene-associat 38.3 31 0.00067 33.6 3.2 33 91-123 134-166 (384)
38 cd06420 GT2_Chondriotin_Pol_N 37.3 24 0.00051 29.1 2.0 27 89-115 78-104 (182)
39 PF02434 Fringe: Fringe-like; 34.5 17 0.00038 33.9 0.8 124 88-233 84-214 (252)
40 PF12996 DUF3880: DUF based on 32.7 22 0.00047 27.5 0.9 16 85-100 13-28 (79)
41 PRK10073 putative glycosyl tra 31.5 43 0.00093 32.1 2.9 107 13-124 5-119 (328)
42 PLN02867 Probable galacturonos 29.3 21 0.00046 37.7 0.5 34 80-114 334-367 (535)
43 cd06438 EpsO_like EpsO protein 28.5 57 0.0012 27.4 2.9 29 89-117 80-108 (183)
44 cd04191 Glucan_BSP_ModH Glucan 25.5 46 0.00099 31.0 2.0 36 89-124 94-130 (254)
45 TIGR03472 HpnI hopanoid biosyn 25.3 47 0.001 32.1 2.1 36 89-124 125-160 (373)
46 PRK10714 undecaprenyl phosphat 24.7 55 0.0012 31.4 2.4 104 13-122 5-121 (325)
47 PRK11204 N-glycosyltransferase 24.6 63 0.0014 31.3 2.8 108 12-124 52-169 (420)
48 cd04179 DPM_DPG-synthase_like 24.4 49 0.0011 27.2 1.7 37 90-126 79-115 (185)
49 KOG1555 26S proteasome regulat 24.2 41 0.00089 33.4 1.4 41 157-197 80-120 (316)
50 cd06430 GT8_like_2 GT8_like_2 23.4 1.3E+02 0.0027 29.7 4.6 101 16-119 2-124 (304)
51 cd04187 DPM1_like_bac Bacteria 23.3 71 0.0015 26.5 2.5 33 89-122 79-111 (181)
52 KOG3708 Uncharacterized conser 22.4 43 0.00093 35.8 1.2 41 81-126 88-128 (681)
53 cd00505 Glyco_transf_8 Members 22.2 1.6E+02 0.0036 26.6 4.9 34 80-114 85-118 (246)
54 PF03214 RGP: Reversibly glyco 20.8 55 0.0012 33.0 1.5 40 87-126 88-127 (348)
55 cd06436 GlcNAc-1-P_transferase 20.6 56 0.0012 28.0 1.4 35 90-124 89-123 (191)
56 PF02593 dTMP_synthase: Thymid 20.1 4.1E+02 0.0089 25.0 7.1 93 19-126 2-110 (217)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=1.1e-119 Score=847.46 Aligned_cols=266 Identities=64% Similarity=1.173 Sum_probs=255.2
Q ss_pred CCCCCCCCCCC--CCCCeeEEEEecccccccHHHHhhhccCCCceEEEEeecCccCccccccccCceeEEEeeccchhhh
Q 021847 1 MRPLWGFPKSD--NSSFSLFAIAAGIKQSDLVDKMVTKFLSSNFSVMLFHYDGVVDQWKTFEWCDRVIHVSAANQTKWWF 78 (306)
Q Consensus 1 ~r~lwg~~~~~--~~~k~Lv~~~VG~kqk~~v~~~v~kf~~~~Fdv~LfhYdg~~d~w~~~ews~~aIhv~~~~qtKww~ 78 (306)
||||||+|+++ .++||||||+||+|||++||++|+|| ++|||||||||||++|+|++||||++||||++.|||||||
T Consensus 26 ~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~kqtKww~ 104 (294)
T PF05212_consen 26 LRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARKQTKWWF 104 (294)
T ss_pred eeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCchhhcccccceEEEEeccceEEee
Confidence 79999999999 66799999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hccccCcccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCC
Q 021847 79 AKRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCD 158 (306)
Q Consensus 79 akRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~ 158 (306)
||||||||||++|||||||||||+||+|+|+|||+||++||||||||||++++|++||+||+|++.++|||.+.+.+.|.
T Consensus 105 akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~~~~~~~~~ 184 (294)
T PF05212_consen 105 AKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHRKTRGGPRCC 184 (294)
T ss_pred hhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEeccCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999777788888
Q ss_pred CCCCCCCCcceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEccccCCCCCCCcc
Q 021847 159 KNSTAPPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHYGRPTLGVPEKKT 238 (306)
Q Consensus 159 ~~~~~ppct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~g~Ptlg~~~~~~ 238 (306)
+++++||||||||||||||||+|||||||||||||+|||||||+|++|+ +++++||||||||||+|+|+||||+++...
T Consensus 185 ~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~~kiGVVDs~~VvH~gvptLG~~~~~~ 263 (294)
T PF05212_consen 185 DDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRHKKIGVVDSQYVVHTGVPTLGGQGNSE 263 (294)
T ss_pred CCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-ccccccEEEEeeEEEEEcCCCcCCCccccc
Confidence 8999999999999999999999999999999999999999999999999 789999999999999999999999965321
Q ss_pred ccccccCCCCcccccccccccccCCCCCCChHHHHhhhHHHHHHHHHHHHHHHhc
Q 021847 239 DLLEIGFSPETENITHVMTKTSSHSHKKDPRLEVRRQSFLEFKIFKRRWIQAAKK 293 (306)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~r~~~E~~~f~~R~~~A~~~ 293 (306)
.+.++|.+||+||++||++|++||++|+++
T Consensus 264 -------------------------~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~ 293 (294)
T PF05212_consen 264 -------------------------KGKDPREEVRRRSFAEMRIFQKRWANAVKE 293 (294)
T ss_pred -------------------------cCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 145789999999999999999999999986
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.94 E-value=0.17 Score=43.05 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=63.4
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCCCCCCCCCCcc
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDKNSTAPPCTG 168 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~~~~~ppct~ 168 (306)
+.+|||++.|+|..++.-.+.++.+.++..++.+..|..-...+ ++.+
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~ 125 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG--------------------------------SFVG 125 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC--------------------------------ceEE
Confidence 57999999999999998888888888775555554443222111 1112
Q ss_pred eEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEcccc
Q 021847 169 WIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHYGRP 229 (306)
Q Consensus 169 fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~g~P 229 (306)
-+++|++++-+= +.. +.-..||=|.-+.+-+. ..+.++ .+.+..+.|....
T Consensus 126 ------~~~~~~~~~~~g-~~~-~~~~~~~eD~~~~~r~~-~~G~~i-~~~~~~~~h~~~~ 176 (202)
T cd04185 126 ------VLISRRVVEKIG-LPD-KEFFIWGDDTEYTLRAS-KAGPGI-YVPDAVVVHKTAI 176 (202)
T ss_pred ------EEEeHHHHHHhC-CCC-hhhhccchHHHHHHHHH-HcCCcE-EecceEEEEcccc
Confidence 247888886542 222 22356777766544432 235688 9999999999433
No 3
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=92.67 E-value=0.45 Score=43.30 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=70.9
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHh--CCcccCCCc-CCCCCceeeeeeeeeccceecceeccCCCCCCCCCCCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSE--GLEISQPAL-DPAKSEVHHQITARSQRSIVHRRTYKPGLCDKNSTAPP 165 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~--gLeIsQPAL-d~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~~~~~pp 165 (306)
..+|||++.|+|..++.-.+.++++.+++. +.-+..|.+ +.+ +....+...... ... +.. .... .+.+.
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~----~~~~-~~~~~ 143 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRG-TSRRLPAIHLDG-LLL-RQI----SLDG-LTTPQ 143 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCC-CcccCCceeecc-cce-eee----cccc-cCCce
Confidence 379999999999999999999999988876 567777764 332 211222221111 100 000 0000 00010
Q ss_pred CcceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 166 CTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 166 ct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
-+.++=.-..+++|++++.+=.| ..++ -.++.|.-|..-+. ..+.+|.++....+.|.
T Consensus 144 ~~~~~~~sg~li~~~~~~~iG~f-de~~-fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 144 KTSFLISSGCLITREVYQRLGMM-DEEL-FIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHR 201 (281)
T ss_pred eccEEEcCcceeeHHHHHHhCCc-cHhh-cccchHHHHHHHHH-HCCCEEEEeCCEEEEEe
Confidence 01111001236899999866322 2233 23456766643332 23568999999999997
No 4
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.58 E-value=2.2 Score=39.31 Aligned_cols=135 Identities=12% Similarity=0.065 Sum_probs=74.4
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCC-ceeeeeeee-ec---c--ceecceecc-CCCCCCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKS-EVHHQITAR-SQ---R--SIVHRRTYK-PGLCDKN 160 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S-~~sh~iT~r-~~---~--~~vhr~~~~-~~~C~~~ 160 (306)
+..|||+|.|.|..++..-++++++.+....-.+.-|.+..-.+ ...++-... .. . ...|..... ...+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998877777776543211 122221111 00 0 001100000 0000111
Q ss_pred CCCCCCcceEEEeccccchhHHHHhhhhhcCCCcceeh-hh--HhhhhhhcCCCCCcEEEEeeeeEEEccc
Q 021847 161 STAPPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWG-LD--MQLGYCAQGDRTKNVGVVDAEYVVHYGR 228 (306)
Q Consensus 161 ~~~ppct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWG-LD--~~~~~c~~~~~~~kiGVVDa~~V~H~g~ 228 (306)
+..+..+..+-..+=+|+|++|.-+=.|-. . ...|| =| +.+.--..| .+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGgfDe-~-~~~~~~ED~Dl~~R~~~~G---~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGGYDE-G-MDIWGGENLELSFKVWQCG---GSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCCCCC-c-ccccCchhHHHHHHHHHcC---CeEEEeeccEEEEecc
Confidence 112222333333344688999976643322 2 24455 34 444322233 5799999999999854
No 5
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.38 E-value=0.32 Score=38.91 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=58.8
Q ss_pred CccEEEEeccccCCCCCChHHHHHHHHHh-CCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCCCCCCCCCCcc
Q 021847 90 EYSYIFLWDEDLGVEDFNPQKYVSIVKSE-GLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDKNSTAPPCTG 168 (306)
Q Consensus 90 ~YdYIflwDDDl~vd~f~i~ry~~ivr~~-gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~~~~~ppct~ 168 (306)
.+|||++.|+|..++...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999888888888765443 22222222
Q ss_pred eEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 169 WIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 169 fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
+=..+.+|++++++-+-.+-. . ...+|-|..+...+. ..+.+|..+....+.|.
T Consensus 112 -~~~~~~~~~~~~~~~~~~~~~-~-~~~~~eD~~~~~~~~-~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 -VSGAFLLVRREVFEEVGGFDE-D-FFLYYEDVDLCLRAR-LAGYRVLYVPQAVIYHH 165 (166)
T ss_pred -CceeeEeeeHHHHHHcCCCCh-h-hhccccHHHHHHHHH-HcCCeEEEccceEEEec
Confidence 001245788999975422211 1 123666776665442 24579999999999997
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.37 E-value=1.3 Score=38.44 Aligned_cols=123 Identities=14% Similarity=0.087 Sum_probs=60.7
Q ss_pred CccEEEEeccccCCCCCChHHHH---HHHH-HhCCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCCCCCCCCC
Q 021847 90 EYSYIFLWDEDLGVEDFNPQKYV---SIVK-SEGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDKNSTAPP 165 (306)
Q Consensus 90 ~YdYIflwDDDl~vd~f~i~ry~---~ivr-~~gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~~~~~pp 165 (306)
.||||++.|+|..++...+.+++ .... ...+-+..|...........+.. +.....+.. ..+. ..+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~----~~~ 144 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKLRI-----QKEG----EEG 144 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCcccee-----cccc----cCC
Confidence 58999999999999988888885 2222 22344555543321111111110 100000000 0000 000
Q ss_pred CcceEE-Ee--ccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 166 CTGWIE-MM--APVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 166 ct~fVE-iM--aPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
+. -++ ++ +-+|+|+++..+=.|-. ++ ...|-|+.+...+. ..+.++..+....|.|.
T Consensus 145 ~~-~~~~~~~~~~~~rr~~~~~~ggfd~-~~-~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 145 LK-EVDFLITSGSLISLEALEKVGGFDE-DL-FIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHE 204 (237)
T ss_pred ce-EeeeeeccceEEcHHHHHHhCCCCH-HH-cCccchHHHHHHHH-HcCCcEEEEcCeEEEec
Confidence 00 111 11 12589999987643322 22 12345655544442 23568999888888887
No 7
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=87.46 E-value=1.1 Score=38.62 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=85.8
Q ss_pred CeeEEEEecccccccHHHHhhhccC---CCceEEEEeecCccCcccc-c-----cccCceeEEEee---cc--chhhhhc
Q 021847 15 FSLFAIAAGIKQSDLVDKMVTKFLS---SNFSVMLFHYDGVVDQWKT-F-----EWCDRVIHVSAA---NQ--TKWWFAK 80 (306)
Q Consensus 15 k~Lv~~~VG~kqk~~v~~~v~kf~~---~~Fdv~LfhYdg~~d~w~~-~-----ews~~aIhv~~~---~q--tKww~ak 80 (306)
+..|++++-...- .+...|+.... .++.|+++. |+..++=.+ + ++....|++... .+ +|-.-+.
T Consensus 2 ~v~Vvip~~~~~~-~l~~~l~sl~~~~~~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n 79 (228)
T PF13641_consen 2 RVSVVIPAYNEDD-VLRRCLESLLAQDYPRLEVVVVD-DGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALN 79 (228)
T ss_dssp -EEEE--BSS-HH-HHHHHHHHHTTSHHHTEEEEEEE-E-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHH
T ss_pred EEEEEEEecCCHH-HHHHHHHHHHcCCCCCeEEEEEE-CCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHH
Confidence 4456666544322 45555554432 578888886 343222111 1 133223443222 22 2322222
Q ss_pred cccCcccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCCCC
Q 021847 81 RFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDKN 160 (306)
Q Consensus 81 RflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~~ 160 (306)
..+. ...+|||++.|+|..++...+.++++.+...+..+.|+........ ..++.-......+... .-......
T Consensus 80 ~~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (228)
T PF13641_consen 80 EALA---AARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWHL-RFRSGRRA 153 (228)
T ss_dssp HHHH---H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EETT-TS-TT-B-
T ss_pred HHHH---hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhhh-hhhhhhcc
Confidence 2221 1459999999999999999999999999778888888665332111 1111111100000000 00000000
Q ss_pred CCCCCCcceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 161 STAPPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 161 ~~~ppct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
-..+.++| -+=+|+|+++.-+-.|-. ..-|=|+.+...+. ..+.+|.......|.|.
T Consensus 154 ~~~~~~~G----~~~~~rr~~~~~~g~fd~----~~~~eD~~l~~r~~-~~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 154 LGVAFLSG----SGMLFRRSALEEVGGFDP----FILGEDFDLCLRLR-AAGWRIVYAPDALVYHE 210 (228)
T ss_dssp ---S-B------TEEEEEHHHHHHH-S--S----SSSSHHHHHHHHHH-HTT--EEEEEEEEEEE-
T ss_pred cceeeccC----cEEEEEHHHHHHhCCCCC----CCcccHHHHHHHHH-HCCCcEEEECCcEEEEe
Confidence 00111111 133689999977643322 33447777654432 24578999988888888
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=86.69 E-value=0.77 Score=39.41 Aligned_cols=164 Identities=11% Similarity=-0.000 Sum_probs=81.6
Q ss_pred CeeEEEEecccccccHHHHhhhcc---CCCceEEEEeecCccCcc-cccc-c----cCceeEEEeeccchhhhhcc-ccC
Q 021847 15 FSLFAIAAGIKQSDLVDKMVTKFL---SSNFSVMLFHYDGVVDQW-KTFE-W----CDRVIHVSAANQTKWWFAKR-FLH 84 (306)
Q Consensus 15 k~Lv~~~VG~kqk~~v~~~v~kf~---~~~Fdv~LfhYdg~~d~w-~~~e-w----s~~aIhv~~~~qtKww~akR-flh 84 (306)
+.-|++||=.... .+.+.|+... -++|.|++..- +..|+- ..++ + ....+++.......-...|. -++
T Consensus 2 ~vsviip~~n~~~-~l~~~L~sl~~q~~~~~eiivVdd-~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 79 (196)
T cd02520 2 GVSILKPLCGVDP-NLYENLESFFQQDYPKYEILFCVQ-DEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLI 79 (196)
T ss_pred CeEEEEecCCCCc-cHHHHHHHHHhccCCCeEEEEEeC-CCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHH
Confidence 3457778776655 3556665442 25688888754 444442 1111 1 11123222111110010110 010
Q ss_pred -cccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCCCCCCC
Q 021847 85 -PDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDKNSTA 163 (306)
Q Consensus 85 -Pdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~~~~~ 163 (306)
-=-.+.+|||++.|.|..++...+.++++.+. +|..+--.+. |
T Consensus 80 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~-----------------------~------ 123 (196)
T cd02520 80 KGYEEARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL-----------------------C------ 123 (196)
T ss_pred HHHHhCCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee-----------------------c------
Confidence 00125799999999999887777777765542 2322211000 0
Q ss_pred CCCcceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 164 PPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 164 ppct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
++ ..+=+|+|++++-+-.+-. ...-.+=|+.+...+. ..+.+|..++.. ++|.
T Consensus 124 --~~----g~~~~~r~~~~~~~ggf~~--~~~~~~eD~~l~~rl~-~~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 124 --AF----GKSMALRREVLDAIGGFEA--FADYLAEDYFLGKLIW-RLGYRVVLSPYV-VMQP 176 (196)
T ss_pred --cc----CceeeeEHHHHHhccChHH--HhHHHHHHHHHHHHHH-HcCCeEEEcchh-eecc
Confidence 01 1234788999976543311 1122356777765553 245789888774 5555
No 9
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=86.43 E-value=1.6 Score=38.29 Aligned_cols=175 Identities=17% Similarity=0.255 Sum_probs=89.5
Q ss_pred CCCCCCCCCCCCCCeeEEEEecccc--cccHHHHhhhccCCCceEEEEeecCccCccccccccCceeEEEeeccchhhhh
Q 021847 2 RPLWGFPKSDNSSFSLFAIAAGIKQ--SDLVDKMVTKFLSSNFSVMLFHYDGVVDQWKTFEWCDRVIHVSAANQTKWWFA 79 (306)
Q Consensus 2 r~lwg~~~~~~~~k~Lv~~~VG~kq--k~~v~~~v~kf~~~~Fdv~LfhYdg~~d~w~~~ews~~aIhv~~~~qtKww~a 79 (306)
|.-||++..-...+.-+.+=+|... -..++..|.+-....=||+++.+. |.+..+. .+.+. .-+| ..
T Consensus 7 R~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~---D~y~nlt--~K~~~-----~~~w-~~ 75 (195)
T PF01762_consen 7 RETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFV---DSYRNLT--LKTLA-----GLKW-AS 75 (195)
T ss_pred HHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecc---cccchhh--HHHHH-----HHHH-HH
Confidence 5668877765556666777778776 334566565532223378776552 3333321 11111 1122 22
Q ss_pred ccccCcccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeeccce--ecceeccCCCC
Q 021847 80 KRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITARSQRSI--VHRRTYKPGLC 157 (306)
Q Consensus 80 kRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S~~sh~iT~r~~~~~--vhr~~~~~~~C 157 (306)
+. . ..++||+..|||+-| ++.++++..++.-.+...+.+.. +.....-..|.+.++ +....|
T Consensus 76 ~~-c-----~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g--~~~~~~~~~r~~~~kw~v~~~~y----- 139 (195)
T PF01762_consen 76 KH-C-----PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYG--GCIKNGPPIRDPSSKWYVSEEEY----- 139 (195)
T ss_pred hh-C-----CchhheeecCcEEEE---ehHHhhhhhhhcccCcccccccc--ccccCCccccccccCceeeeeec-----
Confidence 21 2 358999999999988 55666666666533333333222 111121223333322 111111
Q ss_pred CCCCCCCCCcceEEEeccccchhHHHHhhhhhcCCCcceehhh-HhhhhhhcC
Q 021847 158 DKNSTAPPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLD-MQLGYCAQG 209 (306)
Q Consensus 158 ~~~~~~ppct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD-~~~~~c~~~ 209 (306)
....-|| |....+-++|+++.+.+....++- .-+-+| -.+|.|++.
T Consensus 140 -~~~~yP~---y~~G~~yvls~~~v~~i~~~~~~~--~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 140 -PDDYYPP---YCSGGGYVLSSDVVKRIYKASSHT--PFFPLEDVFIGILAEK 186 (195)
T ss_pred -ccccCCC---cCCCCeEEecHHHHHHHHHHhhcC--CCCCchHHHHHHHHHH
Confidence 1112233 334678899999998765443322 233354 444999864
No 10
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=86.16 E-value=1.5 Score=37.84 Aligned_cols=39 Identities=13% Similarity=0.006 Sum_probs=32.8
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCc
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPAL 127 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPAL 127 (306)
+.+|||.+.|+|..++...++++++..++.+..+.++..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 379999999999999999999999888887777766543
No 11
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.92 E-value=0.54 Score=39.67 Aligned_cols=116 Identities=10% Similarity=-0.028 Sum_probs=62.6
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHh-CCcccCCCcCCC--CCceeeeeeeeeccceecceecc--CCCCCCCCCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSE-GLEISQPALDPA--KSEVHHQITARSQRSIVHRRTYK--PGLCDKNSTA 163 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~-gLeIsQPALd~~--~S~~sh~iT~r~~~~~vhr~~~~--~~~C~~~~~~ 163 (306)
+.+|||++.|+|..++.-.+.++++.+.++ +..|..+....- .+...+... .+. ..+...+ ...|.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~----- 149 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR--LPT--SHDDILKFARRRSP----- 149 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc--CCC--CHHHHHHHhccCCC-----
Confidence 579999999999999988899988887654 566655543210 111111111 000 0000000 11111
Q ss_pred CCCcceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEE
Q 021847 164 PPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVV 224 (306)
Q Consensus 164 ppct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~ 224 (306)
+..++=+|+|+++..+-.+-.. -.+-|+.+...+- ..+.++..+....+.
T Consensus 150 ------~~~~~~~~rr~~~~~~g~~~~~----~~~eD~~~~~r~~-~~g~~~~~~~~~~~~ 199 (201)
T cd04195 150 ------FNHPTVMFRKSKVLAVGGYQDL----PLVEDYALWARML-ANGARFANLPEILVK 199 (201)
T ss_pred ------CCChHHhhhHHHHHHcCCcCCC----CCchHHHHHHHHH-HcCCceecccHHHhh
Confidence 1112236889999876554322 4577877764442 234678777654443
No 12
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=81.03 E-value=0.66 Score=39.72 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=26.3
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCccc
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEIS 123 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIs 123 (306)
+..|||++.|+|..++...+.++++.+...+..+.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 55799999999988877777788777655555543
No 13
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=80.39 E-value=2.4 Score=37.84 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=59.8
Q ss_pred CCCCeeEEEEecccccccHHHHhh---hcc--CCCceEEEEeecCccCcccc-cc-c----cCceeEEEee--ccchhhh
Q 021847 12 NSSFSLFAIAAGIKQSDLVDKMVT---KFL--SSNFSVMLFHYDGVVDQWKT-FE-W----CDRVIHVSAA--NQTKWWF 78 (306)
Q Consensus 12 ~~~k~Lv~~~VG~kqk~~v~~~v~---kf~--~~~Fdv~LfhYdg~~d~w~~-~e-w----s~~aIhv~~~--~qtKww~ 78 (306)
..++.-|++++ ++....+...++ +.. ..+|.|+++ =||..|+=.+ ++ + ....+.+... ++.+---
T Consensus 7 ~~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eiivv-DdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a 84 (243)
T PLN02726 7 GAMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEIIVV-DDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTA 84 (243)
T ss_pred CCceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEEEE-eCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHH
Confidence 45677888887 444444444332 211 136777777 4666554111 00 1 1112333222 2222110
Q ss_pred hccccCcccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCC
Q 021847 79 AKRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQP 125 (306)
Q Consensus 79 akRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQP 125 (306)
...=+ -.+..|||++.|.|...+...+.++++.+.+.+..+...
T Consensus 85 ~n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 85 YIHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred HHHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 00000 135789999999999999888999999887777666544
No 14
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.23 E-value=2.5 Score=34.77 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=26.7
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHH-hCCcccC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKS-EGLEISQ 124 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~-~gLeIsQ 124 (306)
+.+|||++.|+|..++...+.++++.+.+ .+..+..
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVY 110 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEE
Confidence 46899999999999999888888844433 3444443
No 15
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=79.39 E-value=8.1 Score=36.19 Aligned_cols=138 Identities=13% Similarity=-0.005 Sum_probs=79.1
Q ss_pred ccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCCC----CCCCCCC
Q 021847 91 YSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDK----NSTAPPC 166 (306)
Q Consensus 91 YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~----~~~~ppc 166 (306)
|+|++++++|+.++...++++++.+++.+-...=|++-.+...-.+.-... ..............+.. ....+.+
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG-GESDGLTGGWRASPLLEIAPDLSSYLEV 163 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec-cccccccccceecccccccccccchhhh
Confidence 559999999999999999999999999987777666544311111111111 11000000000111111 1112233
Q ss_pred cceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEccccCCC
Q 021847 167 TGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHYGRPTLG 232 (306)
Q Consensus 167 t~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~g~Ptlg 232 (306)
..++..-+-+++|++++-+=.|-. + -=.+.-|.-+.+-+. ..+.+|..+=.-.|.|...-+.+
T Consensus 164 ~~~~~G~~~li~~~~~~~vG~~de-~-~F~y~eD~D~~~R~~-~~G~~i~~~p~a~i~H~~g~s~~ 226 (305)
T COG1216 164 VASLSGACLLIRREAFEKVGGFDE-R-FFIYYEDVDLCLRAR-KAGYKIYYVPDAIIYHKIGSSKG 226 (305)
T ss_pred hhhcceeeeEEcHHHHHHhCCCCc-c-cceeehHHHHHHHHH-HcCCeEEEeeccEEEEeccCCCC
Confidence 446677678899999976643222 2 234445555544442 12458999999999998544444
No 16
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=78.60 E-value=2.6 Score=35.79 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=32.5
Q ss_pred EEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCC
Q 021847 93 YIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPA 130 (306)
Q Consensus 93 YIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~ 130 (306)
||.+.|+|..++.....+..+.++.-+..+.|+.....
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~ 38 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR 38 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec
Confidence 78999999999998899998888855888888887653
No 17
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=78.51 E-value=1 Score=39.34 Aligned_cols=127 Identities=16% Similarity=0.024 Sum_probs=65.5
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeee-eeccceecceeccCCCCCCCCCCCCCc
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITA-RSQRSIVHRRTYKPGLCDKNSTAPPCT 167 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S~~sh~iT~-r~~~~~vhr~~~~~~~C~~~~~~ppct 167 (306)
+.+|||++.|.|..++...++++..++...+..+.|+-+......- ..++. +.-....|-.+...+. ..+.+.
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 159 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANY-SLLTRVQAMSLDYHFTIEQVAR-----SSTGLF 159 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCC-chhhHhhhhhHHhhhhHhHhhH-----hhcCCe
Confidence 5899999999999999888888777665555555555332100000 00100 0000000000000000 000111
Q ss_pred ceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 168 GWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 168 ~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
..+=.++-+|+|+++.-+-.+-. + ..+=|+.+...+. ..+.++..+....|.|.
T Consensus 160 ~~~~g~~~~~rr~~~~~vgg~~~-~---~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~ 213 (232)
T cd06437 160 FNFNGTAGVWRKECIEDAGGWNH-D---TLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAE 213 (232)
T ss_pred EEeccchhhhhHHHHHHhCCCCC-C---cchhhHHHHHHHH-HCCCeEEEeccceeeee
Confidence 11112223799999987654432 1 2356777665552 24578999988887777
No 18
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=71.04 E-value=2.2 Score=36.90 Aligned_cols=41 Identities=7% Similarity=-0.078 Sum_probs=35.6
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDP 129 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~ 129 (306)
+.+|||++.|+|..++...+.++++.+...++.+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 47999999999999999999999999887788888776544
No 19
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=70.56 E-value=3.1 Score=32.70 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=29.6
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPA 126 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPA 126 (306)
+..+||++.|+|..++.-.+.++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 56779999999999999999999999999766544333
No 20
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=70.21 E-value=3.6 Score=35.31 Aligned_cols=124 Identities=6% Similarity=-0.098 Sum_probs=68.4
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHH-hCCcccCCCcCC--CCCceeeeeeeeecc--ceecceeccCCCCCCCCCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKS-EGLEISQPALDP--AKSEVHHQITARSQR--SIVHRRTYKPGLCDKNSTA 163 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~-~gLeIsQPALd~--~~S~~sh~iT~r~~~--~~vhr~~~~~~~C~~~~~~ 163 (306)
+.+|||.+.|+|..++...+.++++.+.+ .++.+.++.... ..+. ..+...... ..+.+.+.....+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------ 154 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPF--DWLADGAPNEQELFYGVIQPGRDR------ 154 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcc--hhHHHHHHHHHHHHHHHHHHHHhh------
Confidence 47999999999999999999999999987 667777664211 1111 001100000 0000000000000
Q ss_pred CCCcceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 164 PPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 164 ppct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
.++ .++=.+.=+|+|++++-+-.|- . ...+-|+.+..-+. ..+.+|..++...+.|.
T Consensus 155 ~~~-~~~~g~~~~~r~~~~~~ig~~~--~--~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 155 WGA-AFCCGSGAVVRREALDEIGGFP--T--DSVTEDLATSLRLH-AKGWRSVYVPEPLAAGL 211 (234)
T ss_pred cCC-ceecCceeeEeHHHHHHhCCCC--c--cceeccHHHHHHHH-HcCceEEEecCcccccc
Confidence 011 1222345578999998765443 1 23467877753331 23467888777776665
No 21
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=63.90 E-value=3.8 Score=35.60 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=31.1
Q ss_pred CccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCC
Q 021847 90 EYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPA 126 (306)
Q Consensus 90 ~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPA 126 (306)
.||||++.|+|..++.-.+.++++.+...+..+.++.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 4999999999999999999999888876677776653
No 22
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=63.10 E-value=2.3 Score=36.55 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=26.7
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQ 124 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQ 124 (306)
+..|||++.|.|...+...+.++++.+...+..+..
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 456999999999988887788877775555544433
No 23
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=61.60 E-value=8.5 Score=33.28 Aligned_cols=31 Identities=10% Similarity=-0.024 Sum_probs=26.5
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEG 119 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~g 119 (306)
+.+|||++.|.|..++...+.+.+..+.+..
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 5799999999999999988888887776654
No 24
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=57.92 E-value=13 Score=34.79 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=55.2
Q ss_pred cccccccHHHHhhhcc-CCCceEEEEeecCccCccccccccCceeEEEeeccchhhhhccccCcccccCccEEEEecccc
Q 021847 23 GIKQSDLVDKMVTKFL-SSNFSVMLFHYDGVVDQWKTFEWCDRVIHVSAANQTKWWFAKRFLHPDIVAEYSYIFLWDEDL 101 (306)
Q Consensus 23 G~kqk~~v~~~v~kf~-~~~Fdv~LfhYdg~~d~w~~~ews~~aIhv~~~~qtKww~akRflhPdiv~~YdYIflwDDDl 101 (306)
..+-.......|+... .+.-.=++..+-+...-+....|....+-|....+++=-+-.||+..+.+ .-|.||..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i-~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEI-ETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCcccc-CcceEEEecCCc
Confidence 4444445566666542 34455455556663233333556655566767666666677888755433 479999999999
Q ss_pred CCCCCChHHHHHHHHHh
Q 021847 102 GVEDFNPQKYVSIVKSE 118 (306)
Q Consensus 102 ~vd~f~i~ry~~ivr~~ 118 (306)
.++..+++.-|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999988888744
No 25
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=53.77 E-value=16 Score=29.65 Aligned_cols=52 Identities=27% Similarity=0.430 Sum_probs=39.3
Q ss_pred ccccCcccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCC--cCCCCCceee
Q 021847 80 KRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPA--LDPAKSEVHH 136 (306)
Q Consensus 80 kRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPA--Ld~~~S~~sh 136 (306)
.-|+||.+.++--.|||+-|++|+....+ +-.++.|+.||.-+ |+. +|.+.+
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~ei----~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQEI----EETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHHH----HHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 45789999999999999999999976544 45667778888765 444 355544
No 26
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=52.06 E-value=11 Score=33.20 Aligned_cols=55 Identities=22% Similarity=0.501 Sum_probs=37.8
Q ss_pred hhhhccccCcccccCccEEEEecccc-------CCCCCCh-----------HHHHHHHHHhCCcccCCCcCCCCCceeee
Q 021847 76 WWFAKRFLHPDIVAEYSYIFLWDEDL-------GVEDFNP-----------QKYVSIVKSEGLEISQPALDPAKSEVHHQ 137 (306)
Q Consensus 76 ww~akRflhPdiv~~YdYIflwDDDl-------~vd~f~i-----------~ry~~ivr~~gLeIsQPALd~~~S~~sh~ 137 (306)
=|+++||+-|+ -+++|++++.+ +-..|++ -.|=-++++||| ..|||..= +.+-|.
T Consensus 15 ~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~l-a~IV~~ 87 (135)
T PF09828_consen 15 PWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARL-AAIVRG 87 (135)
T ss_pred HHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHH-HHHHHH
Confidence 49999999887 57788887761 2223333 246678899999 99999763 444333
No 27
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=49.93 E-value=12 Score=36.13 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=59.9
Q ss_pred CCeeEEEEecccccccHHHHhhhcc-----------CCCceEEEEeecCccCcccc-c-cccCc------eeEEE--eec
Q 021847 14 SFSLFAIAAGIKQSDLVDKMVTKFL-----------SSNFSVMLFHYDGVVDQWKT-F-EWCDR------VIHVS--AAN 72 (306)
Q Consensus 14 ~k~Lv~~~VG~kqk~~v~~~v~kf~-----------~~~Fdv~LfhYdg~~d~w~~-~-ews~~------aIhv~--~~~ 72 (306)
+..-|++|| +|...++...++... ..++.|++. =||..|+=.+ + ++..+ .+++. ..|
T Consensus 70 ~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N 147 (333)
T PTZ00260 70 VDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIV-NDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN 147 (333)
T ss_pred eEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEE-eCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC
Confidence 345666666 444445565554321 125776666 6887665111 1 11111 25543 344
Q ss_pred cchhhhhccccCcccccCccEEEEeccccCCCCCChHHHHHHHHH---hCCcccC
Q 021847 73 QTKWWFAKRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKS---EGLEISQ 124 (306)
Q Consensus 73 qtKww~akRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~---~gLeIsQ 124 (306)
+.|..-.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..
T Consensus 148 ~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~ 199 (333)
T PTZ00260 148 KGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVF 199 (333)
T ss_pred CChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEE
Confidence 45532211111 1257899999999999999999999999875 4444433
No 28
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=47.49 E-value=11 Score=29.30 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=25.3
Q ss_pred CccEEEEeccccCCCCCChHHH-HHHHHHhCCcccCCC
Q 021847 90 EYSYIFLWDEDLGVEDFNPQKY-VSIVKSEGLEISQPA 126 (306)
Q Consensus 90 ~YdYIflwDDDl~vd~f~i~ry-~~ivr~~gLeIsQPA 126 (306)
.+|||++.|+|..++...+.++ ..+.+..+..+..+.
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~ 115 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGR 115 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeee
Confidence 7999999999999887777777 333333444444443
No 29
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=47.24 E-value=16 Score=27.75 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=19.2
Q ss_pred CccEEEEeccccCCCCCChHHH
Q 021847 90 EYSYIFLWDEDLGVEDFNPQKY 111 (306)
Q Consensus 90 ~YdYIflwDDDl~vd~f~i~ry 111 (306)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 6999999999999888777776
No 30
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=46.67 E-value=15 Score=30.72 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=29.7
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHH-HHhCCcccCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIV-KSEGLEISQP 125 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~iv-r~~gLeIsQP 125 (306)
+.+|||++.|+|..++...+.++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999988889999888 4555555544
No 31
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.46 E-value=15 Score=31.09 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=28.3
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQP 125 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQP 125 (306)
+.+|||++.|+|..++.-.++++++.+.+.+-.+.+.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 117 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG 117 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEee
Confidence 4699999999999998888888888666555443333
No 32
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=44.15 E-value=15 Score=32.15 Aligned_cols=122 Identities=20% Similarity=0.113 Sum_probs=68.4
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHH--hCCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCCCCCCCCCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKS--EGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDKNSTAPPC 166 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~--~gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~~~~~ppc 166 (306)
+.||||++.|+|+.++.-.+.++..-... .||-=+-|-.-+.++..+.- ..-...+|-.+. ....-
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l---~~~~~~~~~~~~---------~a~~~ 97 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRL---EAAFFNFLPGVL---------QALGG 97 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHH---HHHHHhHHHHHH---------HHhcC
Confidence 78999999999999988888777765554 33322223322222211110 000001111000 00123
Q ss_pred cceEEEeccccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 167 TGWIEMMAPVFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 167 t~fVEiMaPVFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
++|+=.|+=.|+|++++..=.| +.+.+.-.=||.++..+. ..+.+|...... |+++
T Consensus 98 ~~~~~G~~m~~rr~~L~~~GG~--~~l~~~ladD~~l~~~~~-~~G~~v~~~~~~-v~~~ 153 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIGGF--EALADYLADDYALGRRLR-ARGYRVVLSPYP-VVQT 153 (175)
T ss_pred CCceecceeeeEHHHHHHcccH--HHHhhhhhHHHHHHHHHH-HCCCeEEEcchh-eeec
Confidence 6778888889999999754111 123345567999998874 356677665533 4454
No 33
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.95 E-value=23 Score=29.72 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=30.5
Q ss_pred ccchhHHHHhhhhhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEc
Q 021847 176 VFSRAAWRCVWYLIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHY 226 (306)
Q Consensus 176 VFSR~Awrcvw~~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~ 226 (306)
+|+|++++-+-.+..+ ..|+-|+.+..++.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~~~---~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFPDA---DVIMHDWWLALLASA--FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhcccccc---ccccchHHHHHHHHH--cCceEEcchhHHHHh
Confidence 6899999765444322 256777666655532 457999988877666
No 34
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=41.43 E-value=25 Score=31.05 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=29.5
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHh--CCcccCCC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSE--GLEISQPA 126 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~--gLeIsQPA 126 (306)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999998888888877643 34444543
No 35
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=41.23 E-value=15 Score=32.18 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=31.2
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALD 128 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd 128 (306)
+..|||++.|+|..++...+.++++.+...+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3469999999999999888888888886656666665543
No 36
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.53 E-value=21 Score=30.37 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=31.3
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALD 128 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd 128 (306)
+.+|||++.|+|..++...+++++..+...+..++.+...
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 110 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR 110 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence 4589999999999999988888877777666666655543
No 37
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=38.33 E-value=31 Score=33.61 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=29.6
Q ss_pred ccEEEEeccccCCCCCChHHHHHHHHHhCCccc
Q 021847 91 YSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEIS 123 (306)
Q Consensus 91 YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIs 123 (306)
+|||++.|.|..++...+.++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 38
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=37.31 E-value=24 Score=29.07 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=20.7
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHH
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIV 115 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~iv 115 (306)
+.+|||+++|+|..++...+.++++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 579999999999988766566655543
No 39
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=34.51 E-value=17 Score=33.88 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=54.2
Q ss_pred ccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeeccceecceeccCCCCCCCCCCCCCc
Q 021847 88 VAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPALDPAKSEVHHQITARSQRSIVHRRTYKPGLCDKNSTAPPCT 167 (306)
Q Consensus 88 v~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPALd~~~S~~sh~iT~r~~~~~vhr~~~~~~~C~~~~~~ppct 167 (306)
-..+|++++.|||.-| ++++++++...|+ -+||-.=.. .+..++++.-.+.. .+ .....+-
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~-~~~~~~~~~~~~~~-~~------------~~~~~~~ 144 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGR-PSGDRPIEIIHRFN-PN------------KSKDSGF 144 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE--EE----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeee-eccCccceeecccc-cc------------ccCcCce
Confidence 3568999999999987 6777777777654 234432111 11222222210000 00 0011122
Q ss_pred ceEEEe-ccccchhHHHHh--hh----hhcCCCcceehhhHhhhhhhcCCCCCcEEEEeeeeEEEccccCCCC
Q 021847 168 GWIEMM-APVFSRAAWRCV--WY----LIQNDLIHAWGLDMQLGYCAQGDRTKNVGVVDAEYVVHYGRPTLGV 233 (306)
Q Consensus 168 ~fVEiM-aPVFSR~Awrcv--w~----~iqNdLvhGWGLD~~~~~c~~~~~~~kiGVVDa~~V~H~g~Ptlg~ 233 (306)
.|.-.- .-|+||.|.+-+ |. +++++--..+.=|..+++|++.. -+|-++++ .-.|.-+|.|..
T Consensus 145 ~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~--lgv~lt~s-~~fhs~~~~l~~ 214 (252)
T PF02434_consen 145 WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENL--LGVPLTHS-PLFHSHLENLQD 214 (252)
T ss_dssp -EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHT--T---EEE--TT---SSS-GGG
T ss_pred EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhc--CCcceeec-hhhcccCccccc
Confidence 344432 368999998665 22 22333223567899999999641 34555665 567887888653
No 40
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=32.71 E-value=22 Score=27.53 Aligned_cols=16 Identities=38% Similarity=0.758 Sum_probs=13.6
Q ss_pred cccccCccEEEEeccc
Q 021847 85 PDIVAEYSYIFLWDED 100 (306)
Q Consensus 85 Pdiv~~YdYIflwDDD 100 (306)
..+...|||||++|.+
T Consensus 13 ~~i~~~~~~iFt~D~~ 28 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS 28 (79)
T ss_pred hhhCCCCCEEEEECHH
Confidence 3678899999999975
No 41
>PRK10073 putative glycosyl transferase; Provisional
Probab=31.46 E-value=43 Score=32.15 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=60.8
Q ss_pred CCCeeEEEEecccccccHHHHhhhcc---CCCceEEEEeecCccCcccc-c-ccc--CceeEE-EeeccchhhhhccccC
Q 021847 13 SSFSLFAIAAGIKQSDLVDKMVTKFL---SSNFSVMLFHYDGVVDQWKT-F-EWC--DRVIHV-SAANQTKWWFAKRFLH 84 (306)
Q Consensus 13 ~~k~Lv~~~VG~kqk~~v~~~v~kf~---~~~Fdv~LfhYdg~~d~w~~-~-ews--~~aIhv-~~~~qtKww~akRflh 84 (306)
.++.-|++||=... ..+...+.... ..+|.|++.. ||.+|+=.+ + +|. ...|++ ...++.. -+-|..
T Consensus 5 ~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~EIIiVd-DgStD~t~~i~~~~~~~~~~i~vi~~~n~G~--~~arN~- 79 (328)
T PRK10073 5 TPKLSIIIPLYNAG-KDFRAFMESLIAQTWTALEIIIVN-DGSTDNSVEIAKHYAENYPHVRLLHQANAGV--SVARNT- 79 (328)
T ss_pred CCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCeEEEEEe-CCCCccHHHHHHHHHhhCCCEEEEECCCCCh--HHHHHH-
Confidence 35567788874433 34444444332 2578888874 787654111 1 121 122332 2223221 111110
Q ss_pred cccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccC
Q 021847 85 PDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQ 124 (306)
Q Consensus 85 Pdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQ 124 (306)
-=-.+..|||+|.|.|-.++...++++++.+++.++++..
T Consensus 80 gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 80 GLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 0012578999999999989888889999988888777754
No 42
>PLN02867 Probable galacturonosyltransferase
Probab=29.29 E-value=21 Score=37.66 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=30.5
Q ss_pred ccccCcccccCccEEEEeccccCCCCCChHHHHHH
Q 021847 80 KRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSI 114 (306)
Q Consensus 80 kRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~i 114 (306)
.||+=||++.++|-|...|+|+.|.. ++..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 57888999999999999999999977 88888876
No 43
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=28.52 E-value=57 Score=27.43 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=25.0
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHH
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKS 117 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~ 117 (306)
+.||||++.|.|..++...+.++.+.+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888887753
No 44
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=25.54 E-value=46 Score=30.99 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.8
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHH-HhCCcccC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVK-SEGLEISQ 124 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr-~~gLeIsQ 124 (306)
+.||||.+.|-|..++...+.+++..+. .-++-+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq 130 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQ 130 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 6899999999999999999999998885 44455554
No 45
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=25.35 E-value=47 Score=32.14 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=28.9
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccC
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQ 124 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQ 124 (306)
+.||||.+.|.|..++..-+.+..+.++..+..+.+
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~ 160 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVT 160 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEe
Confidence 689999999999999888888888777655555544
No 46
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=24.68 E-value=55 Score=31.41 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=58.2
Q ss_pred CCCeeEEEEecccccccHHHHhhhc------cCCCceEEEEeecCccCccccc--cc----cCceeEE-Eeeccchhhhh
Q 021847 13 SSFSLFAIAAGIKQSDLVDKMVTKF------LSSNFSVMLFHYDGVVDQWKTF--EW----CDRVIHV-SAANQTKWWFA 79 (306)
Q Consensus 13 ~~k~Lv~~~VG~kqk~~v~~~v~kf------~~~~Fdv~LfhYdg~~d~w~~~--ew----s~~aIhv-~~~~qtKww~a 79 (306)
.++.-|++|| ++.-.++.+.++.. ...+|.|++. =||..|.-.+. ++ ..+.+++ ...+..|..=.
T Consensus 5 ~~~vSVVIP~-yNE~~~i~~~l~~l~~~~~~~~~~~EIIvV-DDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~ 82 (325)
T PRK10714 5 IKKVSVVIPV-YNEQESLPELIRRTTAACESLGKEYEILLI-DDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAI 82 (325)
T ss_pred CCeEEEEEcc-cCchhhHHHHHHHHHHHHHhCCCCEEEEEE-eCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHH
Confidence 3456666766 44444455554422 1246777666 57776663221 11 1122222 23333333211
Q ss_pred ccccCcccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcc
Q 021847 80 KRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEI 122 (306)
Q Consensus 80 kRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeI 122 (306)
..=+ -.+.+|||++.|.|+..+...+.++++.++ .|.++
T Consensus 83 ~~G~---~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~Dv 121 (325)
T PRK10714 83 MAGF---SHVTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDV 121 (325)
T ss_pred HHHH---HhCCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCE
Confidence 1101 125789999999999999999999999885 45444
No 47
>PRK11204 N-glycosyltransferase; Provisional
Probab=24.64 E-value=63 Score=31.29 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCCCeeEEEEecccccccHHHHhhhcc---CCCceEEEEeecCccCcccc-cc-ccC--ceeEEE--eeccchhhhhccc
Q 021847 12 NSSFSLFAIAAGIKQSDLVDKMVTKFL---SSNFSVMLFHYDGVVDQWKT-FE-WCD--RVIHVS--AANQTKWWFAKRF 82 (306)
Q Consensus 12 ~~~k~Lv~~~VG~kqk~~v~~~v~kf~---~~~Fdv~LfhYdg~~d~w~~-~e-ws~--~aIhv~--~~~qtKww~akRf 82 (306)
..++.-|++++=... ..+.+.++... -++++|++.. ||..|+=.+ ++ ... ..+++. ..+.+|=.-.+.-
T Consensus 52 ~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~eiiVvd-D~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g 129 (420)
T PRK11204 52 EYPGVSILVPCYNEG-ENVEETISHLLALRYPNYEVIAIN-DGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTG 129 (420)
T ss_pred CCCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCeEEEEEE-CCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHH
Confidence 445677788875544 44555554332 2478888874 555444221 11 111 113322 2334442111111
Q ss_pred cCcccccCccEEEEeccccCCCCCChHHHHHHHHH-hCCcccC
Q 021847 83 LHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKS-EGLEISQ 124 (306)
Q Consensus 83 lhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~-~gLeIsQ 124 (306)
+ -.+.||||++.|.|..++...+.++++.+++ .+..+.|
T Consensus 130 ~---~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~ 169 (420)
T PRK11204 130 A---AAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVT 169 (420)
T ss_pred H---HHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEE
Confidence 1 1257999999999999999888888888853 3344433
No 48
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=24.41 E-value=49 Score=27.18 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=28.1
Q ss_pred CccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCC
Q 021847 90 EYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPA 126 (306)
Q Consensus 90 ~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPA 126 (306)
.-|||.+.|+|..++...++++++.+.+.+..+....
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 3499999999999888888888887666555554443
No 49
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=41 Score=33.42 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=33.1
Q ss_pred CCCCCCCCCCcceEEEeccccchhHHHHhhhhhcCCCccee
Q 021847 157 CDKNSTAPPCTGWIEMMAPVFSRAAWRCVWYLIQNDLIHAW 197 (306)
Q Consensus 157 C~~~~~~ppct~fVEiMaPVFSR~Awrcvw~~iqNdLvhGW 197 (306)
|.-+..+.-.|.|||-+-|||++.+...+-.-.+.-+|-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 44455566678999999999999999877766777788888
No 50
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=23.36 E-value=1.3e+02 Score=29.66 Aligned_cols=101 Identities=17% Similarity=0.298 Sum_probs=62.8
Q ss_pred eeEEEEecccccccHHHHhhh---ccCCCceEEEEeecCccCcccc--cc-c--c-----CceeE-EEeeccc--hhhh-
Q 021847 16 SLFAIAAGIKQSDLVDKMVTK---FLSSNFSVMLFHYDGVVDQWKT--FE-W--C-----DRVIH-VSAANQT--KWWF- 78 (306)
Q Consensus 16 ~Lv~~~VG~kqk~~v~~~v~k---f~~~~Fdv~LfhYdg~~d~w~~--~e-w--s-----~~aIh-v~~~~qt--Kww~- 78 (306)
.|++++||++- .-+-..++. +....+.+.+|.- ....+|.. |+ | + .-.|| |....+. .|-.
T Consensus 2 ~~~vv~~g~~~-~~~~~~lkSil~~n~~~l~Fhi~~d-~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l 79 (304)
T cd06430 2 HLAVVACGERL-EETLTMLKSAIVFSQKPLRFHIFAE-DQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKL 79 (304)
T ss_pred EEEEEEcCCcH-HHHHHHHHHHHHhCCCCEEEEEEEC-CccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhc
Confidence 47889999983 333333332 2345788889864 42233321 21 3 1 11334 3322221 3432
Q ss_pred -----hccccCcccccCccEEEEeccccCCCCCChHHHHHHHHHhC
Q 021847 79 -----AKRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEG 119 (306)
Q Consensus 79 -----akRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~g 119 (306)
..|++=|+++.++|-|.-.|-|+.+ .-++..++++.+..+
T Consensus 80 ~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 80 FKPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred ccHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3577889999999999999999998 568999999866553
No 51
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=23.33 E-value=71 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=24.4
Q ss_pred cCccEEEEeccccCCCCCChHHHHHHHHHhCCcc
Q 021847 89 AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEI 122 (306)
Q Consensus 89 ~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeI 122 (306)
+..|||++.|+|...+.-.+.++++.+ +.+.++
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~ 111 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDV 111 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcE
Confidence 456999999999998877778877763 334443
No 52
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.42 E-value=43 Score=35.77 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=30.9
Q ss_pred cccCcccccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCC
Q 021847 81 RFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPA 126 (306)
Q Consensus 81 RflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPA 126 (306)
++||--+.+.|||+||--|+..|++|-.-|++. .+.|-||-
T Consensus 88 ~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~-----hmsin~dl 128 (681)
T KOG3708|consen 88 GLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLID-----HMSINEDL 128 (681)
T ss_pred HHHHHhhccccceEEEecCcceecHHHHHHHHh-----hccccccc
Confidence 345555889999999999999998887777654 44565653
No 53
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=22.23 E-value=1.6e+02 Score=26.62 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=28.7
Q ss_pred ccccCcccccCccEEEEeccccCCCCCChHHHHHH
Q 021847 80 KRFLHPDIVAEYSYIFLWDEDLGVEDFNPQKYVSI 114 (306)
Q Consensus 80 kRflhPdiv~~YdYIflwDDDl~vd~f~i~ry~~i 114 (306)
.||+=|+++..||-|...|.|+.+- -++..++++
T Consensus 85 ~RL~i~~llp~~~kvlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 85 TKLHLPNLVPDYDKILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred HHHHHHHHhhccCeEEEEcCCeeec-cCHHHHhhc
Confidence 5666688888899999999999996 688888865
No 54
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=20.85 E-value=55 Score=32.96 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=31.3
Q ss_pred cccCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCC
Q 021847 87 IVAEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPA 126 (306)
Q Consensus 87 iv~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPA 126 (306)
+++..|||+.+|||-..-.-+.-+-++.+..+...++-||
T Consensus 88 L~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~s 127 (348)
T PF03214_consen 88 LVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTPS 127 (348)
T ss_pred hhcccceEEEEccccccccCCccceehhhhccceeeeccC
Confidence 5778999999999988766666777777777776666665
No 55
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=20.64 E-value=56 Score=27.99 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=24.1
Q ss_pred CccEEEEeccccCCCCCChHHHHHHHHHhCCcccC
Q 021847 90 EYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQ 124 (306)
Q Consensus 90 ~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQ 124 (306)
.+|||++.|.|..++.-.+.+........++.+.|
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~ 123 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQ 123 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEe
Confidence 36899999999999887777765554433333333
No 56
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=20.09 E-value=4.1e+02 Score=24.99 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=59.2
Q ss_pred EEEecccccccHHHHhhhccCCCce--EEEEeecCccCc----ccc-ccccCceeEEEeeccchhhhhccccCcccc---
Q 021847 19 AIAAGIKQSDLVDKMVTKFLSSNFS--VMLFHYDGVVDQ----WKT-FEWCDRVIHVSAANQTKWWFAKRFLHPDIV--- 88 (306)
Q Consensus 19 ~~~VG~kqk~~v~~~v~kf~~~~Fd--v~LfhYdg~~d~----w~~-~ews~~aIhv~~~~qtKww~akRflhPdiv--- 88 (306)
+++-|.--...++.+.++| +|+ +.++-|.+..++ ..+ |+=-..+==+.+.. +|||+.
T Consensus 2 vi~~G~yGeR~~~~i~~~~---~~~~~v~~~~~p~~l~efId~pee~Lp~i~~~Dl~I~y~----------lHPDl~~~l 68 (217)
T PF02593_consen 2 VIYDGKYGERVIENIKNYF---DFCRSVIVYEIPEDLPEFIDDPEEYLPKIPEADLLIAYG----------LHPDLTYEL 68 (217)
T ss_pred eeeeCcchHHHHHHHHhcC---CCCceEEEEeCCccccccccChHHHccCCCCCCEEEEec----------cCchhHHHH
Confidence 3444555544455555554 566 888888775444 322 11000000112222 799976
Q ss_pred ------cCccEEEEeccccCCCCCChHHHHHHHHHhCCcccCCC
Q 021847 89 ------AEYSYIFLWDEDLGVEDFNPQKYVSIVKSEGLEISQPA 126 (306)
Q Consensus 89 ------~~YdYIflwDDDl~vd~f~i~ry~~ivr~~gLeIsQPA 126 (306)
+.+.+|.++-++-. .-..+.+-+..+++|+++.-|-
T Consensus 69 ~~~~~e~g~kavIvp~~~~~--~g~~~~lk~~~e~~gi~~~~P~ 110 (217)
T PF02593_consen 69 PEIAKEAGVKAVIVPSESPK--PGLRRQLKKQLEEFGIEVEFPK 110 (217)
T ss_pred HHHHHHcCCCEEEEecCCCc--cchHHHHHHHHHhcCceeecCc
Confidence 67999999988877 6677899999999999998883
Done!