BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021849
(306 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 128/192 (66%), Gaps = 4/192 (2%)
Query: 1 MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIPLY C+K+E+ G+ F CTVEIG I YIG +AKTKKEAEIKAARTALLAIQ SA
Sbjct: 114 MNYAIPLYLCQKNESPGRGTLFKCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQLSA 173
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
SE S NS GN QLTV+P RKRG E A EE +NVPKAKK RF+KK LK K G ++D
Sbjct: 174 SESSHNSIGNCQLTVIPFRKRGAETAAVLEEAMNVPKAKKARFRKKTLKKKHSGNKVDHN 233
Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPA 179
Q + GN ++ Q GS+ + + S +QG ++L + T + ++GR E ERE
Sbjct: 234 QGETIGNKKD---GQAGSESDKNDASVVQGTGHQLLPMLSTSNSEDGRLVPESSERETTD 290
Query: 180 VNDALPHHIGGD 191
V AL HI GD
Sbjct: 291 VTGALVCHISGD 302
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 143/237 (60%), Gaps = 13/237 (5%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIP+Y C+KDE+ G+ FSCTVEIG IRYIG AA+TKKEAEIKAARTALLAI+++
Sbjct: 113 MNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANT 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
+ S GNTQLTV+P +K+GPE + NP+E K KK RFK K L+ K PG ++
Sbjct: 173 DGVGEKSIGNTQLTVIPGKKKGPE-SGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGND 231
Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEI-EPIEREMP 178
Q+++T ME +Q GS++ Q + S +Q + +L++E + +E +S + + +
Sbjct: 232 QVEDTRGMEVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKSIVNQNGGDKTV 291
Query: 179 AVNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSL---------AKEVNEVT 226
A D +P I G+ + + A+ E+G SS+ A EVN V+
Sbjct: 292 AEGDPIPDII-GNCQNGQATASDIKKTDHKAPPELGISSMSPAEVLVSVAMEVNNVS 347
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 117/169 (69%), Gaps = 2/169 (1%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIP+Y C+KDE+ G+ FSCTVEIG IRYIG AA+TKKEAEIKAARTALLAI+++
Sbjct: 113 MNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANT 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
+ S GNTQLTV+P +K+GPE + NP+E K KK RFK K L+ K PG ++
Sbjct: 173 DGVGEKSIGNTQLTVIPGKKKGPE-SGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGND 231
Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 168
Q+++T ME +Q GS++ Q + S +Q + +L++E + +E +S
Sbjct: 232 QVEDTRGMEVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKS 280
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 1 MNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYA+P+YQC+KDE G+ FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSA
Sbjct: 113 MNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSA 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
S S N G+ QLTVLP RKR +E N PK KK RFK+K K K +M +
Sbjct: 173 SHASENQVGHPQLTVLPCRKRATSSVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQI 232
Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 168
+N G E IN E + S SG+ TE E T + + G S
Sbjct: 233 HTENLGIGEIINHEVE-THASVNGESGLLEKKTETFTSEATNNFENGVS 280
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/151 (55%), Positives = 100/151 (66%), Gaps = 5/151 (3%)
Query: 1 MNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYA+P+YQC+KDE G+ FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSA
Sbjct: 113 MNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSA 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
S+ S + G+ QLTVLP RKR E +E N PK KK RFK+K K K +M +
Sbjct: 173 SQASQDQVGHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQI 232
Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGV 150
+N G NIN E + A+ +G GV
Sbjct: 233 HTENLGIGANINHEVE----THASVNGESGV 259
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/151 (55%), Positives = 100/151 (66%), Gaps = 5/151 (3%)
Query: 1 MNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYA+P+YQC+KDE G+ FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSA
Sbjct: 113 MNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSA 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
S+ S + G+ QLTVLP RKR E +E N PK KK RFK+K K K +M +
Sbjct: 173 SQASQDQVGHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQI 232
Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGV 150
+N G NIN E + A+ +G GV
Sbjct: 233 HTENLGIGANINHEVE----THASVNGESGV 259
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 156/287 (54%), Gaps = 47/287 (16%)
Query: 1 MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIPLY+C+KDE G+ + F CTVEIG IRYIG + KTKKEAEIKAARTALLAIQSS
Sbjct: 113 MNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQSSG 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRT 119
S+ +G++QLTV+P RKRG E A+ EE NVPK KK RFKKK+LK K R++
Sbjct: 173 SD---KQSGSSQLTVIPCRKRGVE-ASFQEEAENVPKPKKARFKKKMLKKKLSRDRINNA 228
Query: 120 QLQNTGNMENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPA 179
Q + T + NI Q GS+ Q + S I+G + ++ +E M Q+G+S+ E
Sbjct: 229 QSELTEKL-NIVNGQSGSEADQTDKSAIRGANCKLXTMETQMTFQDGKSDTNLNGGETXD 287
Query: 180 VNDALPHHIGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTT 239
+ L + G+ E++ A+ + + + +E+ S A GT V
Sbjct: 288 IEGVLTSYDAGNPESVQLASPNFNQSNHGTGAEISAKSNA----------GTGKV----- 332
Query: 240 ALAKEVNEGTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESS 286
+GI+E ASM NNS L QI +S
Sbjct: 333 --------------------------TGIIEVASMANNSVLAQIGAS 353
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 79/107 (73%), Gaps = 4/107 (3%)
Query: 1 MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MN+AIPLYQC+KD+ G+ FSCTVEIG IRYIG AKTKKEAEIKAARTALLAIQS
Sbjct: 106 MNFAIPLYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP 165
Query: 60 SELSGNSAGNTQLTVLPS--RKRGPEVANNPEETVNVPKAKKGRFKK 104
+ LS S QLTV+PS RK + + P+ T + P+AKKGRFK+
Sbjct: 166 NSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTAS-PRAKKGRFKR 211
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 79/107 (73%), Gaps = 4/107 (3%)
Query: 1 MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MN+AIPLYQC+KD+ G+ FSCTVEIG IRYIG AKTKKEAEIKAARTALLAIQS
Sbjct: 113 MNFAIPLYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP 172
Query: 60 SELSGNSAGNTQLTVLPS--RKRGPEVANNPEETVNVPKAKKGRFKK 104
+ LS S QLTV+PS RK + + P+ T + P+AKKGRFK+
Sbjct: 173 NSLSEKSVNQVQLTVIPSCKRKEAADCSVKPKSTAS-PRAKKGRFKR 218
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 1 MNYAIPLYQCRKDEAS-GKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58
MNYA+PLYQ +KD+ G+ +SCTV+IG + YIGG AKTK+EAEIKAARTALLAIQ++
Sbjct: 114 MNYAMPLYQSKKDDTPPGRAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQTN 173
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDR 118
AS+ S N G+ LTV+PSRKR E +E PK+KK RFK K K K + R
Sbjct: 174 ASQASENQFGH--LTVIPSRKRATESI--ADEASKAPKSKKSRFKGKYSKKKPHRNKKRR 229
Query: 119 TQLQNTGNMENINASQEGSKVSQANTSGIQGVSTE 153
N G+ I+ E S S + SG+Q + +E
Sbjct: 230 INADNAGDEAKIDNGAE-SLASANDESGLQEIKSE 263
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 74/95 (77%), Gaps = 5/95 (5%)
Query: 1 MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIPLY+C+KDE G+ + F CTVEIG IRYIG +AKTKKEAEIKAARTALLAIQSS
Sbjct: 106 MNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASAKTKKEAEIKAARTALLAIQSSG 165
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNV 94
S+ +GN+QLTV+P RKRG E + EE N+
Sbjct: 166 SD---KPSGNSQLTVIPCRKRGVETSVQ-EEMANI 196
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 4/104 (3%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC+K E G+ QF+CTVEIG I+Y G A KTK+EAEI A RTAL+AIQ+ S
Sbjct: 113 MNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRF 102
+L+ N + TQLTVLP K+ EVA+ +ET+ PKA++ +F
Sbjct: 173 KIDLANNHS--TQLTVLPCEKKTVEVASPVKETIKTPKARRAQF 214
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 76/104 (73%), Gaps = 4/104 (3%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC+K E G+ QF+CTVEIG I+Y G A KTK+EAEI A RTAL+AIQ+ S
Sbjct: 113 MNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRF 102
+L+ N + TQLTVLP K+ EVA+ +ET PKA++ +F
Sbjct: 173 KIDLANNHS--TQLTVLPCEKKTVEVASPVKETFKTPKARRAQF 214
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC+K E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S
Sbjct: 113 MNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
+L+ N + TQLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 173 KIDLANNYS--TQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S
Sbjct: 113 MNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
+L+ N + TQLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 173 KIDLANNYS--TQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S
Sbjct: 113 MNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
+L+ N + TQLTV+P K+ EVA+ +ET + PKA++ +F
Sbjct: 173 KMDLANNYS--TQLTVIPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S
Sbjct: 113 MNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
+L+ N + TQLTV+P K+ EVA+ +ET + PKA++ +F
Sbjct: 173 KMDLANNYS--TQLTVIPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS
Sbjct: 113 MNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSE- 171
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
S+++ + +TQLTV+P K+ EVA+ +ET + PKA++ +F
Sbjct: 172 SKMALANNYSTQLTVIPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S
Sbjct: 113 MNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
+L+ N + +QLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 173 KIDLANNYS--SQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S
Sbjct: 113 MNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
+L+ N + +QLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 173 KIDLANNYS--SQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI + RTAL+AIQS S
Sbjct: 113 MNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISSGRTALIAIQSES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
+L+ N + TQLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 173 KIDLANNYS--TQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-S 58
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S
Sbjct: 113 MNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSES 172
Query: 59 ASELSGNSAGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 102
+L+ N + +QLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 173 KIDLANNYS--SQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 70/103 (67%), Gaps = 3/103 (2%)
Query: 1 MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIPLYQC++ E G+ QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS +
Sbjct: 113 MNYAIPLYQCQRIETLGRATQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSES 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRF 102
N NTQLTVLP K+ +ET+ PKA+K +F
Sbjct: 173 KNNLANY--NTQLTVLPCEKKTLLAPIPLKETIKTPKARKAQF 213
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIPLYQC+K E G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS
Sbjct: 113 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAK 98
N NTQLTVLP K+ + A +ETV KA+
Sbjct: 173 KNNLANY--NTQLTVLPCEKKTIQAAIPLKETVKTLKAR 209
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIPLYQC+K E G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS
Sbjct: 97 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 156
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAK 98
N NTQLTVLP K+ + A +ETV KA+
Sbjct: 157 KNNLANY--NTQLTVLPCEKKTIQAAIPLKETVKTLKAR 193
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 487 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 544
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 545 --EGSANGATKYIVVPGKRVGKEVEKRPIET 573
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 1716 MNYAIPSYICTK-SASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 1773
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 1774 --EGSANGATKYIVVPGKRVGKEVEKRPIET 1802
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 130 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 187
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 188 --EGSANGATKYIVVPGKRVGKEVEKRPIET 216
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 130 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 187
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 188 --EGSANGATKYIVVPGKRVGKEVEKRPIET 216
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 482 MNYAIPSYICTK-PASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 539
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 540 --EGSANGATKYIVVPGKRVGKEVEKRPIET 568
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 132 MNYAIPSYICTKP-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 189
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 190 --EGSANGATKYIVVPGKRVGKEVEKRPIET 218
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 132 MNYAIPSYICTKP-ASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 189
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 190 --EGSANGATKYIVVPGKRVGKEVEKRPIET 218
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 482 MNYAIPSYICTK-PASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 539
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 540 --EGSANGATKYIVVPGKRVGKEVEKRPIET 568
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 130 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 187
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 188 --EGSANGATKYIVVPGKRVGKEVEKMPIET 216
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K +ASG F C+VEIG I YIG AA+TKKEAEIKAARTALLAIQS +
Sbjct: 860 MNYAIPSYICTK-QASGVAPFVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQSQS- 917
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMK 110
G + G + V+P ++ E NP ET + KK +KK K K
Sbjct: 918 --EGGANGAKKYIVVPGQRPDKETNKNPTETPIPLRVKKRGSRKKWNKRK 965
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 487 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 544
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 545 --EGSANGATKYIVVPGKRVGKEVEKMPIET 573
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K +ASG F C+VEIG I YIG AA+TKKEAEIKAARTALLAIQS +
Sbjct: 136 MNYAIPSYICTK-QASGVAPFVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQSQS- 193
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMK 110
G + G + V+P ++ E NP ET + KK +KK K K
Sbjct: 194 --EGGANGAKKYIVVPGQRPDKEANKNPTETPIPLRVKKRGSRKKWNKRK 241
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K +ASG F CTVEIG I+YIG AA+TKKEAEIKAARTALLAIQ +
Sbjct: 136 MNYAIPSYICTK-QASGVAPFICTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQS- 193
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPG 113
G + G + V+P ++ E P ET K KK K+K K K G
Sbjct: 194 --EGCANGAKKYIVVPGQRPVKETDKKPTETPKPLKVKKRGSKRKWNKKKLVG 244
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y + +ASG F TVEIG I+YIG AA+TKKEAEIKAARTALLAIQ +
Sbjct: 112 MNYAIPSYISHR-QASGVAPFISTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQS- 169
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMK 110
G++ G ++ V+P +++ E P ET K KKG FKK+ K K
Sbjct: 170 --DGSANGASKYIVVPGKRK--ETEKKPIETPKPLKVKKGGFKKQRNKRK 215
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 62/92 (67%), Gaps = 5/92 (5%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIG-DIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIP Y C K ASG F CTVEI + +YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 130 MNYAIPSYICTKS-ASGLAPFICTVEIWWEYKYIGAAARTKKDAEIKAARTALLAIQGQS 188
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 189 ---EGSANGATKYIVVPGKRVGKEVEKRPIET 217
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57
MNYAIPLYQC+K E G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS
Sbjct: 20 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 77
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57
MNYAIPLYQC+K E G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS
Sbjct: 17 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K +ASG F C+VEIG I YIG AA+TKK AEIKAARTALLAIQ S
Sbjct: 104 MNYAIPSYICTK-QASGP--FICSVEIGGILYIGAAARTKKGAEIKAARTALLAIQGQ-S 159
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPG 113
E+ N N V+P ++ E P T K KK K+K K K G
Sbjct: 160 EIVANGVKN--YIVVPGQRPIKETDKKPIGTPKPLKVKKRGSKRKWNKRKFMG 210
>gi|41058336|gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]
Length = 318
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 6/76 (7%)
Query: 5 IPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELS 63
IP Y+C R D S + F+CTV++G ++YIG AA+TKKEAEIKAARTALLA+QS S
Sbjct: 1 IPQYECERYDSESKIISFTCTVDVGGMKYIGAAARTKKEAEIKAARTALLAVQS-----S 55
Query: 64 GNSAGNTQLTVLPSRK 79
G + + TV+P +K
Sbjct: 56 GFAPNYSSYTVVPMKK 71
>gi|330541634|gb|AEC32111.1| hypothetical protein [Camellia sinensis]
Length = 248
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 38 KTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKA 97
K KKEAEIKAARTALLAIQ+S SE + + GN+ TV+PS+K+ + +ET K
Sbjct: 37 KRKKEAEIKAARTALLAIQTSGSESNEKATGNSMYTVIPSKKKATDSGIGTQETATALKP 96
Query: 98 KKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQANT-SGIQGVSTE 153
KK FKKK + + G + + +++NTGN+E + +EG ++ AN SG+ + T+
Sbjct: 97 KKSPFKKKSQRKRHVGDKGNHIKVENTGNLEVLIDDREGQQLDHANADSGLLTLETK 153
>gi|108863923|gb|ABG22336.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
Length = 369
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 26 EIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVA 85
+IG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P ++ G EV
Sbjct: 50 KIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPGKRVGKEVE 106
Query: 86 NNPEET 91
P ET
Sbjct: 107 KMPIET 112
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 38/55 (69%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57
Y +P Y+ + + FS TVEI + Y GG AK+KKEAEIKAARTALLAIQ+
Sbjct: 97 YPLPQYKSVRQGEEHSLVFSSTVEIAGVSYSGGCAKSKKEAEIKAARTALLAIQA 151
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 4/62 (6%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASEL 62
+++P+YQ S F+ TVEIG + Y GG AK+KKEAE+KAARTA+LAI+ EL
Sbjct: 101 FSLPIYQIEITGPSHNSVFAATVEIGGVLYKGGTAKSKKEAEVKAARTAILAIK----EL 156
Query: 63 SG 64
+G
Sbjct: 157 AG 158
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
+P+Y + FSCTVEI + + G AAKTKK+A+ AA TA A++ SE
Sbjct: 103 LPVYTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKLESE 159
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 4 AIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELS 63
++P+Y + F+CTVE+ ++ + G AAKTKK+AE AA A AIQ A++
Sbjct: 166 SLPVYATTRSGPGHLPVFTCTVEVANMSFSGEAAKTKKQAEKNAAMAAWSAIQQLANQGR 225
Query: 64 G 64
G
Sbjct: 226 G 226
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
+P+Y + FSCTVEI + + G AAKTKK+A+ AA TA A++
Sbjct: 103 LPVYTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALR 154
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 64
+P+Y + F+CTV +G + + G AAKTKK+AE AA TA +++ A +
Sbjct: 106 LPIYTTVRSGPGHLPVFTCTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQYAKQ--- 162
Query: 65 NSAGNTQLTVL 75
G T T+L
Sbjct: 163 ---GGTSATLL 170
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 4 AIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
++P+Y + F+CTVE+ + + G AAKTKK+AE AA A A++ A++
Sbjct: 120 SLPVYSTTRSGPGHLPVFTCTVELAKMTFSGEAAKTKKQAEKNAAMAAWSALKQFANQ 177
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASEL 62
Y +P+Y K S F TVEI ++G AKTKK AE+ AA+ A ++ S L
Sbjct: 251 YQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKERRSNL 310
Query: 63 SGNS 66
+ S
Sbjct: 311 NHKS 314
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASEL 62
Y +P+Y K S F TVEI ++G AKTKK AE+ AA+ A ++ S L
Sbjct: 252 YQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKERRSNL 311
Query: 63 SGNS 66
+ S
Sbjct: 312 NHKS 315
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
+PLY + F+CTVE+ I + G AK KK+AE AA A A++
Sbjct: 103 LPLYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSALK 154
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
+PLY + F+CTVE+ I + G AK KK+AE AA A A++ E
Sbjct: 103 LPLYTTERSGVGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAASAAWSALKQLVRE 159
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASEL 62
+P+Y + F+CTVE+ + + G AKTKK+A+ AA A A++ S L
Sbjct: 103 LPVYTTVRSGPGHTPIFTCTVELAGMSFTGDPAKTKKQAQKNAAMAAWSALKHFKSYL 160
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
+ ++P+Y+ K A F VEI ++ G A K+KKEAE+K+AR A + A
Sbjct: 213 DLSMPVYKIIKSGALHMPTFFSYVEIEGEKFYGKAGKSKKEAELKSARAAYTVLMERA 270
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
N +P Y + F+C VE+ + + G A KTKK+AE AA A ++ A +
Sbjct: 100 NVPLPTYTTTRSGPGHLPVFTCVVEVAGMNFTGDAGKTKKQAEKNAAMAAWATLKQFAKK 159
Query: 62 LSGNS 66
L+ S
Sbjct: 160 LAPPS 164
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
+PLY + F+CTVE+ I + G AK KK+AE AA A A++ E
Sbjct: 103 LPLYTTERSGLGHLPVFTCTVELAGITFAGDPAKNKKQAEKNAASAAWSALKQLVRE 159
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
+ +P+Y D ++ F TVEI + + G TKK+AE+ AA++A
Sbjct: 191 FPLPIYNTASDVSNYSAAFVSTVEIHGVTFHGKPGNTKKQAEMNAAKSAF 240
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
Y +P+Y K S F TVEI ++G AKTKK AE+ AA+ A ++
Sbjct: 236 YQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLK 289
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 64
+P+Y+ + F CTVEI + + G A+TKK+A+ AA +A S+ +LS
Sbjct: 103 LPVYRTIRAGPGHVPNFYCTVEIAGMHFTGDPARTKKQAQKNAA----IAAWSALRKLSA 158
Query: 65 N 65
N
Sbjct: 159 N 159
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 64
+P Y S F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G
Sbjct: 88 LPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG 147
Query: 65 NSAGNTQLTVLPSRKR---GPEVANNPEETVNVPKAK 98
+ LPS ++ V ++P+E + P +K
Sbjct: 148 SP-------TLPSERQEDVNSNVKSSPQEIHSQPSSK 177
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
+ +P+Y D ++ F TVEI + + G TKK+AE+ AA++A
Sbjct: 191 FPLPIYNTASDVSNYSAAFVSTVEIHGVTFHGKPGNTKKQAEMNAAKSAF 240
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 64
+P Y S F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G
Sbjct: 98 LPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG 157
Query: 65 NSAGNTQLTVLPSRKR---GPEVANNPEETVNVPKAK 98
+ LPS ++ V ++P+E + P +K
Sbjct: 158 SP-------TLPSERQEDVNSNVKSSPQEIHSQPSSK 187
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
+ +P+Y D ++ F TVEI + + G TKK+AE+ AA++A
Sbjct: 191 FPLPIYNTASDVSNYSAAFVSTVEIRGVTFHGKPGNTKKQAEMNAAKSAF 240
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 64
+P Y S F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G
Sbjct: 98 LPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG 157
Query: 65 NSAGNTQLTVLPSRKR---GPEVANNPEETVNVPKAK 98
+ LPS ++ V ++P+E + P +K
Sbjct: 158 SP-------TLPSERQEDVNSNVKSSPQEIHSQPSSK 187
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 6 PLYQCRKDEASGKVQFSCTVEIGDIRYIG-GAAKTKKEAEIKAARTAL 52
P+Y+ + S + +F+CTVE+GD ++ G+ KKEAE AAR A
Sbjct: 75 PIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAY 122
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 64
+P Y S F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G
Sbjct: 98 LPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG 157
Query: 65 NSAGNTQLTVLPSRKR---GPEVANNPEETVNVPKAK 98
+ LPS ++ V ++P+E + P +K
Sbjct: 158 SP-------TLPSERQEDVNSNVKSSPQEIHSQPSSK 187
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
+P+Y + + FSCTVE+ + + G +AKTKK+AE AA A +++ +S
Sbjct: 103 LPMYTSVRSGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSS 158
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 6 PLYQCRKDEASGKVQFSCTVEIGDIRYIG-GAAKTKKEAEIKAARTAL 52
P+Y+ + S + +F+CTVE+GD ++ G+ KKEAE AAR A
Sbjct: 18 PIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAY 65
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
+P+Y + FSCTVEI + + G ++TKK+A+ AA A A++
Sbjct: 103 LPVYTTIRSGPGHGPNFSCTVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALR 154
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
+P+Y + F+CTVE+ + + G +AKTKK+AE AA A A++
Sbjct: 106 LPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 157
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
+P+Y + F+CTVE+ + + G +AKTKK+AE AA A A++
Sbjct: 103 LPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 154
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
+P+Y + + FSCTVE+ + + G +AKTKK+AE AA A +++ +S
Sbjct: 103 LPMYTSVRSGSCHFPGFSCTVELAGMSFTGESAKTKKQAEKNAAIAAWSSLKRMSS 158
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 6 PLYQCRKDEASGKVQFSCTVEIGDIRYIG-GAAKTKKEAEIKAARTAL 52
P+Y+ + S + +F+CTVE+GD ++ G+ KKEAE AAR A
Sbjct: 86 PIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAY 133
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
+P+Y + F+CTVE+ + + G +AKTKK+AE AA A A++
Sbjct: 174 LPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 225
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS--SASELSGNSAGNTQLTVLPSR 78
FSCTVE+ + + G +AKTKK+AE AA A +++ S L G + + SR
Sbjct: 119 FSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPSLDPLRGEEKEQEVVARVLSR 178
Query: 79 KRGPEV 84
R EV
Sbjct: 179 FRPKEV 184
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 4 AIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
++P+Y + F+CTVE+ + + G AAKTKK+AE AA A A++
Sbjct: 358 SLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAMAAWSALK 410
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
FSCTVE+ + + G +AKTKK+AE AA A +++
Sbjct: 119 FSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR 154
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
+P+Y + + FSCTVE+ + + G +AKTKK+AE AA A +++
Sbjct: 103 LPMYTSVRSGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLK 154
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
+P+Y + F+CTV +G + + G AAKTKK+AE AA TA +++
Sbjct: 103 LPIYTTVRSGPGHLPVFTCTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLK 154
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
N +P+Y S F TVE + G AKTKK AE+ AA+ A ++I+
Sbjct: 85 NSMLPVYATATSGPSHSPTFISTVEFAGKVFTGDEAKTKKLAEMSAAKIAFMSIK 139
>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399986771|ref|YP_006567120.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399231332|gb|AFP38825.1| Ribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 230
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTA 51
+FS TV IG+ Y G +TKKEAE+KAA +A
Sbjct: 192 EFSATVVIGEAEYGHGVGRTKKEAELKAAASA 223
>gi|441206731|ref|ZP_20973264.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440628429|gb|ELQ90228.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 230
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTA 51
+FS TV IG+ Y G +TKKEAE+KAA +A
Sbjct: 192 EFSATVVIGEAEYGHGVGRTKKEAELKAAASA 223
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
F+CTVE+ I + G AK KK+AE AA A +++ A E
Sbjct: 119 FTCTVELAGITFTGDHAKNKKQAEKNAASAAWSSLKQLARE 159
>gi|298243648|ref|ZP_06967455.1| hypothetical protein Krac_12191 [Ktedonobacter racemifer DSM 44963]
gi|297556702|gb|EFH90566.1| hypothetical protein Krac_12191 [Ktedonobacter racemifer DSM 44963]
Length = 396
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 25/162 (15%)
Query: 80 RGPEV-ANNPEETVNVPKAKKGRFKKK---ILKMKRPGGRMDRTQLQNTGNMENINASQE 135
R PE N EE V + GR K+K ILK RP + + L T N ++ +++
Sbjct: 5 RNPEQPGNELEENVVRGSLRSGRGKRKNTAILKQARPPRK---SALSRTENAKSTAQARK 61
Query: 136 GSKVS--------QANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHH 187
GS+V+ AN G+ S+ + A+ R+EI I RE+ + +
Sbjct: 62 GSQVAADNVPVLNSANEKGLSPFSSTLHAI-----LHRNRAEIGRISRELDVAENTIYRW 116
Query: 188 IGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGV 229
+ G S+ HS + D S M + +N+ PGV
Sbjct: 117 MNGTSDPRHSHLRNLPDVMSEHRQAM-----IQAINKTFPGV 153
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.305 0.122 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,350,786,408
Number of Sequences: 23463169
Number of extensions: 165647144
Number of successful extensions: 339411
Number of sequences better than 100.0: 531
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 419
Number of HSP's that attempted gapping in prelim test: 338365
Number of HSP's gapped (non-prelim): 1397
length of query: 306
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 164
effective length of database: 9,027,425,369
effective search space: 1480497760516
effective search space used: 1480497760516
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 76 (33.9 bits)