BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021849
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
          Length = 77

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 1  MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQS 57
          MNYAIPLYQC+K E  G+V QF+CTVEIG I+Y                   LLAIQS
Sbjct: 20 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 77


>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
          Implications For Mirna Processing
          Length = 76

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 1  MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXXXXXXXXXXXLLAIQS 57
          MNYAIPLYQC+K E  G+V QF+CTVEIG I+Y                   LLAIQS
Sbjct: 17 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74


>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
          Length = 247

 Score = 27.7 bits (60), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 199 ATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVN 246
           A H  D   N  + MG S +  E++   PG  TSS  C T   A  +N
Sbjct: 81  ARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMN 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.122    0.332 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,941,875
Number of Sequences: 62578
Number of extensions: 283203
Number of successful extensions: 440
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 5
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (24.3 bits)