BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021849
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Query: 1 MNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59
MNYAIPLYQC+K E G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS
Sbjct: 113 MNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 172
Query: 60 SELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAK 98
N NTQLTVLP K+ + A +ETV KA+
Sbjct: 173 KNNLANY--NTQLTVLPCEKKTIQAAIPLKETVKTLKAR 209
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 130 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 187
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 188 --EGSANGATKYIVVPGKRVGKEVEKRPIET 216
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 132 MNYAIPSYICTKP-ASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 189
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 190 --EGSANGATKYIVVPGKRVGKEVEKRPIET 218
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
MNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ +
Sbjct: 130 MNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS- 187
Query: 61 ELSGNSAGNTQLTVLPSRKRGPEVANNPEET 91
G++ G T+ V+P ++ G EV P ET
Sbjct: 188 --EGSANGATKYIVVPGKRVGKEVEKMPIET 216
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 64
+P Y S F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G
Sbjct: 98 LPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTG 157
Query: 65 NSAGNTQLTVLPSRKR---GPEVANNPEETVNVPKAK 98
+ LPS ++ V ++P+E + P +K
Sbjct: 158 SP-------TLPSERQEDVNSNVKSSPQEIHSQPSSK 187
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60
+P+Y + + FSCTVE+ + + G +AKTKK+AE AA A +++ +S
Sbjct: 103 LPMYTSVRSGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSS 158
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
FSCTVE+ + + G +AKTKK+AE AA A +++
Sbjct: 119 FSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR 154
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56
F+CTVE+ I + G AK KK+AE AA A +++
Sbjct: 119 FTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLR 154
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
+++P+Y D + F TV D + G A TKK+AE+ AAR A
Sbjct: 183 FSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVAF 232
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
+P+Y + F+CTVE+ + + G KTKK+A+ AA A
Sbjct: 103 LPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAW 150
>sp|Q96DN5|WDR67_HUMAN WD repeat-containing protein 67 OS=Homo sapiens GN=WDR67 PE=2 SV=2
Length = 1066
Score = 34.7 bits (78), Expect = 0.92, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 213 MGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEP 265
M T L E+ + G+ +S++S H +A + G+ N + ALT+E+N+P
Sbjct: 293 MQTCKLLFEIGSLDEGISSSAISPHGRYIASIMENGSLNIYSVQALTQEINKP 345
>sp|Q5RD21|WDR67_PONAB WD repeat-containing protein 67 OS=Pongo abelii GN=WDR67 PE=2 SV=1
Length = 944
Score = 34.3 bits (77), Expect = 1.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 215 TSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEP 265
T L E+ + G+ +S++S H +A + +G+ N + ALT+EVN+P
Sbjct: 190 TCKLLFEIGSLDEGISSSAISPHGRYIASIMEDGSLNIYSVQALTQEVNKP 240
>sp|Q6NXY1|WDR67_MOUSE WD repeat-containing protein 67 OS=Mus musculus GN=Wdr67 PE=2 SV=1
Length = 996
Score = 33.5 bits (75), Expect = 2.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 215 TSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNEGTPNEGTSTALTEEVNEP 265
T L E+ V G+ +S +S H +A + G+ N + ALT+E+N+P
Sbjct: 295 TCKLLFEIGTVEEGISSSVISPHGRYIASIMENGSLNVYSVQALTQEINKP 345
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58
+P+Y + FS TVE+ + + G AKTKK AE AA A +++ S
Sbjct: 103 LPVYTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQS 156
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 5 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 64
+P Y + + F+ TVE+ I + G AK KK+AE AA A +++ A E S
Sbjct: 103 LPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSS 162
Query: 65 N 65
+
Sbjct: 163 S 163
>sp|Q53844|RNC_SPICI Ribonuclease 3 OS=Spiroplasma citri GN=rnc PE=3 SV=1
Length = 248
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 18 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 52
+V ++ EIG IRY G T KEAE AAR AL
Sbjct: 201 RVLYTVVAEIGGIRYGEGCGYTHKEAEQLAARDAL 235
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 61
F+ +G + Y G ++KKEAE +AA +A +I+++A E
Sbjct: 216 FTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSIRAAADE 256
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 6 PLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 55
P Y K E S + +V Y GGAA+ KK+AE KAAR A+ ++
Sbjct: 145 PEYSVTKTEGSV-TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>sp|B1LW28|CLPP_METRJ ATP-dependent Clp protease proteolytic subunit OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=clpP PE=3 SV=1
Length = 208
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 146 GIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGDSETIHSAATHCSDR 205
G QG +T++L EIE ++R + N+ H G D +TIH+A +
Sbjct: 137 GFQGQATDILI---------HAREIEALKRRL---NEIYVKHTGRDYDTIHTALERDNFM 184
Query: 206 SSNEASEMGTSSLAKEVNEVTP 227
+++ A E G L EV E P
Sbjct: 185 TADAAKEFG---LIDEVIEKRP 203
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 21 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57
F+ +G + Y G ++KKEAE +AA +A AI+S
Sbjct: 206 FTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAIRS 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.122 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,818,280
Number of Sequences: 539616
Number of extensions: 4048339
Number of successful extensions: 8698
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 8519
Number of HSP's gapped (non-prelim): 267
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)