Query 021849
Match_columns 306
No_of_seqs 117 out of 310
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3adg_A F21M12.9 protein; HYL1, 99.7 1.7E-16 6E-21 117.3 8.8 55 2-56 17-72 (73)
2 3adj_A F21M12.9 protein; HYL1, 99.7 1.9E-16 6.5E-21 118.4 8.6 56 2-57 18-74 (76)
3 1di2_A XLRBPA, double stranded 99.6 1.7E-16 5.8E-21 116.0 6.2 54 2-56 14-68 (69)
4 2khx_A Ribonuclease 3; drosha, 99.6 3.6E-16 1.2E-20 120.4 4.6 55 3-57 21-76 (85)
5 2l2n_A Hyponastic leave 1; DSR 99.6 2.9E-15 9.8E-20 118.9 9.0 58 2-59 31-89 (103)
6 1t4n_A Ribonuclease III; DSRBD 99.6 5.3E-16 1.8E-20 123.5 4.7 55 3-57 20-75 (94)
7 2dix_A Interferon-inducible do 99.6 1.9E-15 6.6E-20 115.4 7.6 55 4-59 23-78 (84)
8 2b7t_A Double-stranded RNA-spe 99.6 8.8E-16 3E-20 113.8 5.2 53 3-56 17-70 (73)
9 3p1x_A Interleukin enhancer-bi 99.6 1.6E-15 5.3E-20 113.8 6.5 54 4-58 18-72 (75)
10 2cpn_A TAR RNA-binding protein 99.6 1.9E-15 6.4E-20 117.2 7.0 56 2-58 30-86 (89)
11 2b7v_A Double-stranded RNA-spe 99.6 1.6E-15 5.4E-20 111.6 5.8 53 4-57 15-68 (71)
12 3adl_A RISC-loading complex su 99.6 2.8E-15 9.4E-20 116.3 7.3 55 2-57 29-84 (88)
13 1uhz_A Staufen (RNA binding pr 99.6 3.1E-15 1.1E-19 116.0 6.9 56 2-58 20-76 (89)
14 3llh_A RISC-loading complex su 99.6 3.6E-15 1.2E-19 115.2 6.1 54 4-58 29-83 (90)
15 2l33_A Interleukin enhancer-bi 99.5 6.2E-15 2.1E-19 115.8 6.6 55 5-60 29-84 (91)
16 1ekz_A DSRBDIII, maternal effe 99.5 1.7E-15 5.9E-20 112.7 2.9 52 3-56 22-74 (76)
17 1x49_A Interferon-induced, dou 99.5 6.6E-15 2.3E-19 115.9 6.3 56 5-60 30-86 (97)
18 1whq_A RNA helicase A; double- 99.5 3.5E-15 1.2E-19 118.0 4.5 57 3-59 20-77 (99)
19 1t4o_A Ribonuclease III; RNT1P 99.5 5.8E-15 2E-19 122.0 4.9 57 4-60 23-80 (117)
20 1uil_A Double-stranded RNA-bin 99.5 1.7E-14 5.7E-19 116.5 7.3 54 5-58 42-100 (113)
21 2dmy_A Spermatid perinuclear R 99.5 1.2E-14 4.2E-19 114.0 6.2 53 4-57 30-83 (97)
22 1x48_A Interferon-induced, dou 99.5 2.2E-14 7.7E-19 110.8 7.0 54 6-60 23-77 (88)
23 2ljh_A Double-stranded RNA-spe 99.5 7.6E-14 2.6E-18 113.9 6.5 52 6-58 50-102 (114)
24 1x47_A DGCR8 protein; structur 99.4 2.4E-13 8.1E-18 107.0 7.6 54 3-58 31-85 (98)
25 1whn_A Hypothetical protein ri 99.4 4.6E-13 1.6E-17 110.8 9.6 56 2-59 40-96 (128)
26 1qu6_A Protein kinase PKR; dsR 99.3 4.1E-13 1.4E-17 113.3 3.8 53 6-58 30-83 (179)
27 1o0w_A Ribonuclease III, RNAse 99.3 2.8E-12 9.6E-17 113.1 6.9 56 3-58 194-250 (252)
28 2l3j_A Double-stranded RNA-spe 99.3 3E-12 1E-16 113.0 6.3 54 4-58 18-72 (236)
29 2l3j_A Double-stranded RNA-spe 99.3 4.3E-12 1.5E-16 112.0 6.5 53 4-57 172-225 (236)
30 2a11_A Ribonuclease III, RNAse 99.2 1.7E-12 5.8E-17 113.2 0.0 57 3-59 177-233 (242)
31 2yt4_A Protein DGCR8; DSRBD, R 99.1 5.6E-11 1.9E-15 105.0 6.9 54 3-58 37-91 (232)
32 1qu6_A Protein kinase PKR; dsR 99.1 7.1E-11 2.4E-15 99.7 4.2 55 6-60 121-175 (179)
33 2yt4_A Protein DGCR8; DSRBD, R 99.0 2.8E-10 9.6E-15 100.6 3.8 54 2-58 143-199 (232)
34 3rv0_A K. polysporus DCR1; RNA 98.5 1.6E-08 5.4E-13 94.5 0.0 48 6-58 273-321 (341)
35 3htx_A HEN1; HEN1, small RNA m 91.5 0.13 4.5E-06 54.6 4.4 39 20-58 58-96 (950)
36 2kou_A Dicer-like protein 4; A 86.3 0.95 3.3E-05 35.7 4.8 54 4-60 25-83 (102)
37 2db2_A KIAA0890 protein; DSRM 80.4 0.95 3.2E-05 37.9 2.7 41 19-59 51-91 (119)
38 2gjh_A Designed protein; oblig 22.7 36 0.0012 25.2 1.6 14 36-49 9-22 (62)
No 1
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.67 E-value=1.7e-16 Score=117.31 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=51.1
Q ss_pred CCCCceEEeeccCCCCCceEEEEEEECCEEeeCCCC-CCHHHHHHHHHHHHHHHHh
Q 021849 2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQ 56 (306)
Q Consensus 2 nL~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~G-rSKKEAEQaAAK~AL~aL~ 56 (306)
.+.+|.|++..+||+|+++|+|+|+|+|+.|+.|.| +|||+|||.||+.||..|.
T Consensus 17 ~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 17 KLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp TCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 357899987767999999999999999999999999 9999999999999999885
No 2
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.66 E-value=1.9e-16 Score=118.39 Aligned_cols=56 Identities=66% Similarity=1.039 Sum_probs=51.5
Q ss_pred CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849 2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57 (306)
Q Consensus 2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~ 57 (306)
.+.+|.|.+ ..+||+|++.|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|..
T Consensus 18 ~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 18 NYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp TCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 357899985 56899999999999999999999999999999999999999999864
No 3
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.64 E-value=1.7e-16 Score=116.01 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=49.7
Q ss_pred CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849 2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56 (306)
Q Consensus 2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~ 56 (306)
.+.+|.|.+ ..+||+|++.|+|+|+|+|+ ++.|.|+|||+|||.||+.||..|.
T Consensus 14 ~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 14 GWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp TCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 357899985 56899999999999999998 9999999999999999999999985
No 4
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=120.35 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=50.4
Q ss_pred CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849 3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57 (306)
Q Consensus 3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~ 57 (306)
+.+|.|++ ..+||+|+++|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|..
T Consensus 21 ~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 21 PDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 46899985 55899999999999999999999999999999999999999988753
No 5
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=2.9e-15 Score=118.85 Aligned_cols=58 Identities=31% Similarity=0.397 Sum_probs=53.2
Q ss_pred CCCCceEEeeccCCCCCceEEEEEEECCEEeeCCCC-CCHHHHHHHHHHHHHHHHhhhc
Q 021849 2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQSSA 59 (306)
Q Consensus 2 nL~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~G-rSKKEAEQaAAK~AL~aL~~~s 59 (306)
.+.+|.|++..+||+|+++|+|+|+|+|+.|+.|.| +|||+|||.||+.||..|....
T Consensus 31 ~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 31 KLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp TCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 357899987777999999999999999999999999 9999999999999999998543
No 6
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.59 E-value=5.3e-16 Score=123.53 Aligned_cols=55 Identities=22% Similarity=0.110 Sum_probs=51.0
Q ss_pred CCCceEEeeccCCCCCceEEEEEEECCE-EeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849 3 YAIPLYQCRKDEASGKVQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQS 57 (306)
Q Consensus 3 L~lP~Y~i~ksGPdHdk~FtAeV~IgGk-~yG~G~GrSKKEAEQaAAK~AL~aL~~ 57 (306)
..+|.|++..+||+|+++|+|+|+|+|+ .+|.|.|+|||+|||+||+.||..|.-
T Consensus 20 ~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 20 SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 3579998877799999999999999999 999999999999999999999998873
No 7
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.59 E-value=1.9e-15 Score=115.45 Aligned_cols=55 Identities=33% Similarity=0.521 Sum_probs=50.3
Q ss_pred CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849 4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59 (306)
Q Consensus 4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s 59 (306)
..|.|++ ..+||+|+++|+|+|+|+| .++.|.|+|||+|||.||+.||..|....
T Consensus 23 ~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84)
T 2dix_A 23 NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANA 78 (84)
T ss_dssp CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence 5799985 5689999999999999999 99999999999999999999999997443
No 8
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.59 E-value=8.8e-16 Score=113.77 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=48.8
Q ss_pred CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849 3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56 (306)
Q Consensus 3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~ 56 (306)
..+|.|.+ ..+||+|+++|+++|.|+|+.+ .|.|+|||+|||.||+.||..|.
T Consensus 17 ~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~ 70 (73)
T 2b7t_A 17 KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFV 70 (73)
T ss_dssp CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHh
Confidence 46899985 5589999999999999999997 99999999999999999999986
No 9
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=113.83 Aligned_cols=54 Identities=26% Similarity=0.269 Sum_probs=49.5
Q ss_pred CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
..|.|++ ..+||+|+++|+++|+|+|+.| .|.|+|||+|||.||+.||..|...
T Consensus 18 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 18 RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 4789985 4589999999999999999999 9999999999999999999999754
No 10
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.59 E-value=1.9e-15 Score=117.22 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=50.8
Q ss_pred CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
.+.+|.|++ ..+||+|+++|+|+|+|+|+ ++.|.|+|||+|||.||+.||..|...
T Consensus 30 ~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 30 GWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp TCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 356899985 56899999999999999998 999999999999999999999999643
No 11
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.58 E-value=1.6e-15 Score=111.63 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=48.7
Q ss_pred CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849 4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57 (306)
Q Consensus 4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~ 57 (306)
..|.|++ ..+||+|+++|+|+|+|+|+.+ .|.|+|||+|||.||+.||..|..
T Consensus 15 ~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 15 PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHh
Confidence 5799985 5689999999999999999986 899999999999999999999864
No 12
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=116.26 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=50.4
Q ss_pred CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849 2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57 (306)
Q Consensus 2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~ 57 (306)
.+.+|.|++ ..+||+|+++|+|+|+|+|+ ++.|.|+|||+|||.||+.||..|..
T Consensus 29 ~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (88)
T 3adl_A 29 GWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHT 84 (88)
T ss_dssp TCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHc
Confidence 357899985 56899999999999999998 99999999999999999999999964
No 13
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.57 E-value=3.1e-15 Score=115.97 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=50.7
Q ss_pred CCCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 2 NYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 2 nL~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
.+.+|.|++ ..+||+|+++|+|+|+|+|+ ++.|.|+|||+|||.||+.||..|...
T Consensus 20 ~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 20 KEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp TSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence 357899985 55899999999999999997 999999999999999999999999743
No 14
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.56 E-value=3.6e-15 Score=115.22 Aligned_cols=54 Identities=28% Similarity=0.450 Sum_probs=43.6
Q ss_pred CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
..|.|++ ..+||+|+++|+++|+|+|+ ++.|.|+|||+|||.||+.||..|...
T Consensus 29 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 29 KTPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp CCCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred CCCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhc
Confidence 4799985 67899999999999999998 799999999999999999999999754
No 15
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.54 E-value=6.2e-15 Score=115.77 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=50.1
Q ss_pred CceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849 5 IPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60 (306)
Q Consensus 5 lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~ 60 (306)
.|.|++ ..+||+|+++|+|+|+|+|+.+ .|+|+|||+|||.||+.||..|.....
T Consensus 29 ~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 29 GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence 799975 5689999999999999999997 999999999999999999999975544
No 16
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.54 E-value=1.7e-15 Score=112.72 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=48.4
Q ss_pred CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHh
Q 021849 3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 56 (306)
Q Consensus 3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~ 56 (306)
+. |.|.+ ..+||+|++.|+|+|+|+| .++.|.|+|||+|||.||+.||..|.
T Consensus 22 ~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~ 74 (76)
T 1ekz_A 22 MT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp CC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHT
T ss_pred CC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 45 99985 5689999999999999999 99999999999999999999999985
No 17
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.54 E-value=6.6e-15 Score=115.88 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=50.7
Q ss_pred CceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849 5 IPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60 (306)
Q Consensus 5 lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~ 60 (306)
.|.|++ ..+||+|+++|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|.....
T Consensus 30 ~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 86 (97)
T 1x49_A 30 AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK 86 (97)
T ss_dssp CEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence 389974 56899999999999999999999999999999999999999999975433
No 18
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.53 E-value=3.5e-15 Score=118.02 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCCceEEeeccCCCCCceEEEEEEECC-EEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849 3 YAIPLYQCRKDEASGKVQFSCTVEIGD-IRYIGGAAKTKKEAEIKAARTALLAIQSSA 59 (306)
Q Consensus 3 L~lP~Y~i~ksGPdHdk~FtAeV~IgG-k~yG~G~GrSKKEAEQaAAK~AL~aL~~~s 59 (306)
+..|.|++..+||+|+++|+|+|+|+| +.++.|.|+|||+|||.||+.||..|....
T Consensus 20 ~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 20 KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 467999987789999999999999999 799999999999999999999999998543
No 19
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.52 E-value=5.8e-15 Score=122.00 Aligned_cols=57 Identities=21% Similarity=0.087 Sum_probs=51.7
Q ss_pred CCceEEeeccCCCCCceEEEEEEECCE-EeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849 4 AIPLYQCRKDEASGKVQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSSAS 60 (306)
Q Consensus 4 ~lP~Y~i~ksGPdHdk~FtAeV~IgGk-~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~ 60 (306)
.+|.|.+..+||+|+++|+|+|+|+|. .+|.|.|+|||+|||+||+.||..|..-..
T Consensus 23 ~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~K 80 (117)
T 1t4o_A 23 LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF 80 (117)
T ss_dssp GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579998666799999999999999999 999999999999999999999999875443
No 20
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.52 E-value=1.7e-14 Score=116.45 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=51.0
Q ss_pred CceEEeeccCCCCCceEEEEEEE-----CCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 5 IPLYQCRKDEASGKVQFSCTVEI-----GDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 5 lP~Y~i~ksGPdHdk~FtAeV~I-----gGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
.|.|++..+||+|+++|+|+|+| +|+.|+.|.|+|||+|||.||+.||..|...
T Consensus 42 ~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 42 QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 79999878899999999999999 6899999999999999999999999999854
No 21
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.52 E-value=1.2e-14 Score=113.96 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=49.1
Q ss_pred CCceEEee-ccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849 4 AIPLYQCR-KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57 (306)
Q Consensus 4 ~lP~Y~i~-ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~ 57 (306)
.+|.|++. .+||+|+++|+++|+|+|+.| .|.|+|||+|||.||+.||..|..
T Consensus 30 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 30 PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 57999855 589999999999999999998 999999999999999999999964
No 22
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.51 E-value=2.2e-14 Score=110.76 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=50.2
Q ss_pred ceEEeeccCCCCCc-eEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849 6 PLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60 (306)
Q Consensus 6 P~Y~i~ksGPdHdk-~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~ 60 (306)
|.|+ ..+||+|++ +|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|....+
T Consensus 23 ~~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 77 (88)
T 1x48_A 23 VNYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP 77 (88)
T ss_dssp EEEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CeeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4999 778999999 79999999999999999999999999999999999986644
No 23
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.45 E-value=7.6e-14 Score=113.86 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=48.4
Q ss_pred ceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 6 PLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 6 P~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
|.|++ ..+||+|+++|+++|+|+|+.| .|.|+|||+|||.||+.||..|...
T Consensus 50 p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 50 LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence 89975 5689999999999999999999 9999999999999999999999743
No 24
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.43 E-value=2.4e-13 Score=107.01 Aligned_cols=54 Identities=31% Similarity=0.430 Sum_probs=49.4
Q ss_pred CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
+.+|.|++ ..+||+ ++|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|...
T Consensus 31 ~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 31 KVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 56899985 558998 9999999999999999999999999999999999999744
No 25
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.43 E-value=4.6e-13 Score=110.84 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=50.8
Q ss_pred CCCCceEEeeccCCCCCceEEEEEEECCEEeeCCCC-CCHHHHHHHHHHHHHHHHhhhc
Q 021849 2 NYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQSSA 59 (306)
Q Consensus 2 nL~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~G-rSKKEAEQaAAK~AL~aL~~~s 59 (306)
.+.+|.|++... +|+++|+|+|+|+|+.|+.|.| +|||+|||.||+.||..|....
T Consensus 40 ~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~~ 96 (128)
T 1whn_A 40 KLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPE 96 (128)
T ss_dssp TCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhccc
Confidence 367899987666 9999999999999999999999 9999999999999999997443
No 26
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.34 E-value=4.1e-13 Score=113.31 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=49.4
Q ss_pred ceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 6 PLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 6 P~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
|.|++ ..+||+|+++|+++|+|+|+.|+.|.|+|||+|||.||+.||..|...
T Consensus 30 p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 30 LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSC
T ss_pred CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 89975 568999999999999999999999999999999999999999999743
No 27
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.30 E-value=2.8e-12 Score=113.13 Aligned_cols=56 Identities=30% Similarity=0.369 Sum_probs=50.3
Q ss_pred CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
+..|.|++ ..+||+|++.|+|+|+|+|+.++.|.|+|||+|||.||+.||..|...
T Consensus 194 ~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 194 KVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp SSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred CCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 45799985 558999999999999999999999999999999999999999999643
No 28
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.28 E-value=3e-12 Score=113.03 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=49.4
Q ss_pred CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
..|.|++ ..+||+|+++|+|+|+|+|+.| .|.|+|||+|||.||+.||..|...
T Consensus 18 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 18 PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp SSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhc
Confidence 5799985 5589999999999999999996 9999999999999999999999754
No 29
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.27 E-value=4.3e-12 Score=112.02 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=48.7
Q ss_pred CCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Q 021849 4 AIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 57 (306)
Q Consensus 4 ~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~ 57 (306)
.+|.|++ ..+||+|+++|+++|+|+|+.+ .|.|+|||+|||.||+.||..|..
T Consensus 172 ~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~ 225 (236)
T 2l3j_A 172 PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN 225 (236)
T ss_dssp CCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHcc
Confidence 5799985 5589999999999999999987 999999999999999999999964
No 30
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.19 E-value=1.7e-12 Score=113.24 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=0.0
Q ss_pred CCCceEEeeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849 3 YAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59 (306)
Q Consensus 3 L~lP~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s 59 (306)
+..|.|++..+||+|+++|+|+|+|+|+.++.|.|+|||+|||.||+.||..|....
T Consensus 177 ~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 177 LGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 357999876699999999999999999999999999999999999999999997543
No 31
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.13 E-value=5.6e-11 Score=105.03 Aligned_cols=54 Identities=31% Similarity=0.430 Sum_probs=49.3
Q ss_pred CCCceEEe-eccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 3 YAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 3 L~lP~Y~i-~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
+.+|.|.+ ..+||+ ++|+|+|+|+|+.|+.|.|+|||+|||.||+.||..|...
T Consensus 37 ~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 37 KVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp CCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 56899985 568998 9999999999999999999999999999999999999654
No 32
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.06 E-value=7.1e-11 Score=99.67 Aligned_cols=55 Identities=29% Similarity=0.345 Sum_probs=50.9
Q ss_pred ceEEeeccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849 6 PLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60 (306)
Q Consensus 6 P~Y~i~ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~ 60 (306)
+.|.+..+||+|.+.|+++|.|+|+.|+.|.|+|||+|++.||+.||..|.....
T Consensus 121 ~~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~~~ 175 (179)
T 1qu6_A 121 VNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET 175 (179)
T ss_dssp EEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred ceEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhcccC
Confidence 4898888899999999999999999999999999999999999999999976544
No 33
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=98.95 E-value=2.8e-10 Score=100.57 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=43.1
Q ss_pred CCCCceEE--ee-ccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 2 NYAIPLYQ--CR-KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 2 nL~lP~Y~--i~-ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
++.+|.|. +. .+||+|++.|+++|. ..++.|.|+|||+|||.||+.||..|...
T Consensus 143 ~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 143 NHGMGDTSIKFEVVPGKNQKSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp SSSCCCEEEECC------CCEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCCceEEEEeecCCCCCCCEEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 46789998 44 479999999998876 66899999999999999999999999754
No 34
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.48 E-value=1.6e-08 Score=94.54 Aligned_cols=48 Identities=27% Similarity=0.237 Sum_probs=0.0
Q ss_pred ceEEee-ccCCCCCceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 6 PLYQCR-KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 6 P~Y~i~-ksGPdHdk~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
|.|++. .+|| |+|.|+|+|+.+|.|+|+|||+|||.||+.||..|...
T Consensus 273 ~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 273 LHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp ------------------------------------------------------
T ss_pred ceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 589754 4676 99999999999999999999999999999999999854
No 35
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=91.55 E-value=0.13 Score=54.58 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=36.0
Q ss_pred eEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhh
Q 021849 20 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 58 (306)
Q Consensus 20 ~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~ 58 (306)
.|.|.+.+-+-..-.+.-+-||+|||.||+.||.+|...
T Consensus 58 ~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~g~~ 96 (950)
T 3htx_A 58 LYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGIR 96 (950)
T ss_dssp EEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTTTST
T ss_pred eEEEEeeCCCceEecchhhccccHHHHHHHHHHHHhCCC
Confidence 999999999987778999999999999999999998753
No 36
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=86.32 E-value=0.95 Score=35.71 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=40.1
Q ss_pred CCceEEeeccCCCCCceEEEEEEECC-----EEeeCCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 021849 4 AIPLYQCRKDEASGKVQFSCTVEIGD-----IRYIGGAAKTKKEAEIKAARTALLAIQSSAS 60 (306)
Q Consensus 4 ~lP~Y~i~ksGPdHdk~FtAeV~IgG-----k~yG~G~GrSKKEAEQaAAK~AL~aL~~~s~ 60 (306)
..|.|.+...... +..| |+|.+-. ...|.-+ +|||.|.+.||=.|+..|.....
T Consensus 25 ~~P~~~~~~~~~~-~~~~-c~v~LP~~splr~i~g~~~-~sk~~AK~sAAf~Ac~~L~~~G~ 83 (102)
T 2kou_A 25 PKPEFQFKPVDEF-GGTI-CRITLPANAPISEIESSLL-PSTEAAKKDACLKAVHELHNLGV 83 (102)
T ss_dssp SSCEEEEEECCGG-GCEE-EEEECCTTCSSCCEEEEEE-SSHHHHHHHHHHHHHHHHHHHCS
T ss_pred ccceEEEeEeecC-CCeE-EEEECCCCCCCCeeeCCcc-ccHHHHHHHHHHHHHHHHHHCCC
Confidence 4689985543221 2367 9998876 4556666 99999999999999999987654
No 37
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.43 E-value=0.95 Score=37.92 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=32.5
Q ss_pred ceEEEEEEECCEEeeCCCCCCHHHHHHHHHHHHHHHHhhhc
Q 021849 19 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 59 (306)
Q Consensus 19 k~FtAeV~IgGk~yG~G~GrSKKEAEQaAAK~AL~aL~~~s 59 (306)
+.-+.++.+--..--.|.|+.|-|||.+||..|+..|+.-.
T Consensus 51 K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 51 KKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp EEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcC
Confidence 34455555566667789999999999999999999998553
No 38
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=22.66 E-value=36 Score=25.25 Aligned_cols=14 Identities=64% Similarity=0.506 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHH
Q 021849 36 AAKTKKEAEIKAAR 49 (306)
Q Consensus 36 ~GrSKKEAEQaAAK 49 (306)
..++|||||.-||-
T Consensus 9 tartkkeaekfaai 22 (62)
T 2gjh_A 9 TARTKKEAEKFAAI 22 (62)
T ss_dssp ECSSHHHHHHHHHH
T ss_pred EecchhHHHHHHHH
Confidence 57999999998885
Done!