Query 021850
Match_columns 306
No_of_seqs 67 out of 69
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:09:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 1.2E-57 2.5E-62 384.8 13.3 122 90-211 3-126 (126)
2 PF10805 DUF2730: Protein of u 97.1 0.0012 2.6E-08 54.4 5.8 89 93-207 8-98 (106)
3 PF04375 HemX: HemX; InterPro 95.4 0.055 1.2E-06 53.0 7.7 11 100-110 40-50 (372)
4 PRK10884 SH3 domain-containing 94.8 0.83 1.8E-05 42.0 13.1 98 104-209 66-167 (206)
5 PF01519 DUF16: Protein of unk 94.4 0.28 6.2E-06 41.2 8.3 82 119-209 21-102 (102)
6 PRK14011 prefoldin subunit alp 92.8 0.58 1.3E-05 41.0 7.9 54 99-183 72-125 (144)
7 PHA02562 46 endonuclease subun 92.8 1.2 2.7E-05 44.4 11.1 86 132-217 192-277 (562)
8 TIGR00293 prefoldin, archaeal 92.7 0.82 1.8E-05 37.6 8.3 55 99-184 70-124 (126)
9 PF00038 Filament: Intermediat 92.4 4.7 0.0001 37.6 13.9 91 126-216 167-258 (312)
10 PF04582 Reo_sigmaC: Reovirus 92.2 0.2 4.3E-06 49.4 4.6 86 125-210 67-155 (326)
11 PF13747 DUF4164: Domain of un 92.0 1.8 3.9E-05 35.0 9.3 83 140-226 2-84 (89)
12 PF14712 Snapin_Pallidin: Snap 91.3 3.1 6.7E-05 32.6 9.7 72 136-208 15-91 (92)
13 cd00584 Prefoldin_alpha Prefol 91.3 1.3 2.8E-05 36.7 7.9 56 99-185 71-126 (129)
14 PRK03947 prefoldin subunit alp 91.2 1.6 3.5E-05 36.7 8.5 54 99-183 78-131 (140)
15 PF11932 DUF3450: Protein of u 91.2 5.2 0.00011 36.9 12.6 80 135-214 24-103 (251)
16 PRK11637 AmiB activator; Provi 91.2 2.3 5E-05 42.0 10.9 81 125-205 44-127 (428)
17 PF02996 Prefoldin: Prefoldin 91.2 0.72 1.6E-05 37.2 6.2 56 99-185 61-116 (120)
18 PF07889 DUF1664: Protein of u 90.7 4.5 9.8E-05 35.0 10.9 38 140-177 30-67 (126)
19 PRK11637 AmiB activator; Provi 90.6 2.1 4.6E-05 42.3 10.1 77 132-208 44-123 (428)
20 PRK10920 putative uroporphyrin 89.5 0.95 2.1E-05 45.4 6.7 67 90-164 35-103 (390)
21 smart00502 BBC B-Box C-termina 89.5 5.4 0.00012 31.3 9.7 28 212-239 85-113 (127)
22 PF00015 MCPsignal: Methyl-acc 89.3 12 0.00026 32.0 12.5 17 59-75 43-59 (213)
23 PF10158 LOH1CR12: Tumour supp 89.2 7.7 0.00017 33.6 11.2 50 124-173 27-76 (131)
24 PF00015 MCPsignal: Methyl-acc 88.5 15 0.00032 31.5 13.6 75 131-205 85-159 (213)
25 COG4942 Membrane-bound metallo 88.2 4.2 9.1E-05 41.6 10.2 83 135-222 38-120 (420)
26 PF06103 DUF948: Bacterial pro 88.2 4.5 9.8E-05 31.7 8.4 32 176-207 56-87 (90)
27 PF10805 DUF2730: Protein of u 88.1 2.2 4.7E-05 35.3 6.8 65 152-223 34-100 (106)
28 PF12718 Tropomyosin_1: Tropom 87.9 8.6 0.00019 33.4 10.7 62 150-211 77-138 (143)
29 KOG0250 DNA repair protein RAD 87.5 7.5 0.00016 43.9 12.4 98 135-232 291-388 (1074)
30 cd00890 Prefoldin Prefoldin is 87.0 4.2 9.2E-05 32.9 7.9 43 143-185 84-126 (129)
31 PRK04778 septation ring format 86.8 12 0.00026 38.7 12.8 120 104-223 238-411 (569)
32 PF06419 COG6: Conserved oligo 86.4 5.5 0.00012 41.9 10.2 86 115-203 6-95 (618)
33 PF07798 DUF1640: Protein of u 86.3 23 0.0005 31.3 13.6 96 120-218 43-143 (177)
34 PRK06975 bifunctional uroporph 86.0 3.3 7.2E-05 43.8 8.5 36 144-179 376-411 (656)
35 PF05597 Phasin: Poly(hydroxya 85.8 6.3 0.00014 34.2 8.7 26 186-211 107-132 (132)
36 COG3883 Uncharacterized protei 85.7 6.5 0.00014 38.0 9.5 68 138-205 37-104 (265)
37 PF05478 Prominin: Prominin; 85.7 8.1 0.00018 41.7 11.3 33 130-162 189-222 (806)
38 PF04513 Baculo_PEP_C: Baculov 85.2 13 0.00029 32.8 10.5 83 125-207 35-118 (140)
39 PF10498 IFT57: Intra-flagella 85.1 9.7 0.00021 37.9 10.7 78 117-194 223-300 (359)
40 PHA02562 46 endonuclease subun 84.2 13 0.00028 37.3 11.3 32 174-205 351-382 (562)
41 PF05816 TelA: Toxic anion res 84.0 14 0.0003 35.9 11.1 99 122-220 85-201 (333)
42 PF01442 Apolipoprotein: Apoli 83.7 18 0.00039 30.0 10.4 19 126-144 3-21 (202)
43 PF10046 BLOC1_2: Biogenesis o 83.7 22 0.00048 28.9 10.5 67 144-210 26-95 (99)
44 COG4942 Membrane-bound metallo 83.5 38 0.00083 34.8 14.3 89 122-210 158-253 (420)
45 PF04156 IncA: IncA protein; 83.3 20 0.00043 31.3 10.9 7 220-226 176-182 (191)
46 PF11932 DUF3450: Protein of u 82.9 20 0.00043 33.1 11.2 72 131-202 34-105 (251)
47 PRK09039 hypothetical protein; 80.5 46 0.001 32.7 13.3 87 137-223 100-194 (343)
48 PF10241 KxDL: Uncharacterized 80.5 16 0.00036 29.2 8.5 63 144-206 16-82 (88)
49 PF05739 SNARE: SNARE domain; 80.2 13 0.00029 26.7 7.4 53 153-205 4-56 (63)
50 PRK04778 septation ring format 80.2 32 0.0007 35.7 12.7 17 58-74 251-267 (569)
51 PF05531 NPV_P10: Nucleopolyhe 79.9 6.8 0.00015 31.4 6.1 22 186-207 40-61 (75)
52 PF00261 Tropomyosin: Tropomyo 79.9 26 0.00057 32.2 10.8 67 152-218 91-157 (237)
53 TIGR02132 phaR_Bmeg polyhydrox 79.8 7.7 0.00017 35.9 7.2 55 151-205 77-131 (189)
54 PRK15048 methyl-accepting chem 79.8 49 0.0011 33.4 13.5 54 141-194 272-325 (553)
55 PRK10884 SH3 domain-containing 79.5 21 0.00046 32.9 10.1 69 125-193 97-165 (206)
56 PF06103 DUF948: Bacterial pro 79.3 19 0.00041 28.2 8.4 25 120-144 18-42 (90)
57 PRK04406 hypothetical protein; 79.2 8.6 0.00019 30.3 6.4 39 146-184 4-42 (75)
58 PF03915 AIP3: Actin interacti 79.2 16 0.00034 37.4 9.9 90 141-230 201-310 (424)
59 TIGR01837 PHA_granule_1 poly(h 79.1 15 0.00032 31.0 8.2 44 166-209 73-117 (118)
60 PF04100 Vps53_N: Vps53-like, 79.0 11 0.00024 37.5 8.6 24 182-205 86-109 (383)
61 PRK13182 racA polar chromosome 78.9 9.2 0.0002 34.5 7.4 61 146-208 85-145 (175)
62 PF10186 Atg14: UV radiation r 78.8 51 0.0011 29.9 12.6 47 145-191 62-108 (302)
63 KOG0804 Cytoplasmic Zn-finger 78.8 25 0.00054 36.7 11.2 33 135-167 364-396 (493)
64 PF08614 ATG16: Autophagy prot 78.5 8.6 0.00019 34.3 7.1 96 114-209 71-172 (194)
65 smart00283 MA Methyl-accepting 78.2 45 0.00098 29.0 13.5 74 125-198 137-210 (262)
66 smart00806 AIP3 Actin interact 77.2 41 0.00089 34.7 12.1 93 124-216 176-300 (426)
67 smart00283 MA Methyl-accepting 77.1 49 0.0011 28.7 13.6 48 161-208 40-87 (262)
68 PF06160 EzrA: Septation ring 76.7 45 0.00098 34.7 12.6 121 103-223 233-407 (560)
69 PF09177 Syntaxin-6_N: Syntaxi 76.0 11 0.00023 30.2 6.3 57 144-207 37-96 (97)
70 PF04380 BMFP: Membrane fusoge 75.6 9.6 0.00021 30.1 5.8 78 119-209 1-78 (79)
71 PF09602 PhaP_Bmeg: Polyhydrox 75.4 34 0.00073 31.2 9.9 81 128-208 22-105 (165)
72 KOG0972 Huntingtin interacting 75.2 29 0.00062 34.8 10.1 99 111-209 223-326 (384)
73 PF04582 Reo_sigmaC: Reovirus 75.0 6.2 0.00013 39.2 5.6 99 126-231 54-155 (326)
74 PF08317 Spc7: Spc7 kinetochor 74.9 42 0.00091 32.4 11.1 45 117-161 152-199 (325)
75 PF10828 DUF2570: Protein of u 74.5 5.3 0.00012 33.0 4.3 15 99-113 11-25 (110)
76 PRK09039 hypothetical protein; 74.2 30 0.00065 34.0 10.0 33 256-289 252-287 (343)
77 PF12718 Tropomyosin_1: Tropom 74.2 59 0.0013 28.3 12.3 89 128-220 17-105 (143)
78 COG1196 Smc Chromosome segrega 73.9 52 0.0011 37.1 12.9 49 173-221 862-910 (1163)
79 COG1579 Zn-ribbon protein, pos 73.9 16 0.00034 34.9 7.8 56 154-209 11-66 (239)
80 PF06120 Phage_HK97_TLTM: Tail 73.8 27 0.00059 34.3 9.6 10 237-246 213-222 (301)
81 PF07888 CALCOCO1: Calcium bin 73.1 32 0.00069 36.5 10.5 64 116-179 129-197 (546)
82 PF12128 DUF3584: Protein of u 72.8 38 0.00082 38.4 11.6 94 130-226 258-352 (1201)
83 KOG2629 Peroxisomal membrane a 72.8 17 0.00036 35.9 7.8 64 99-163 92-164 (300)
84 PF12325 TMF_TATA_bd: TATA ele 72.5 19 0.00041 30.8 7.3 63 121-184 44-106 (120)
85 COG1196 Smc Chromosome segrega 72.5 73 0.0016 36.0 13.7 60 162-221 858-917 (1163)
86 PF12732 YtxH: YtxH-like prote 72.4 13 0.00029 28.3 5.8 26 121-146 26-51 (74)
87 PF04513 Baculo_PEP_C: Baculov 71.9 61 0.0013 28.8 10.4 79 126-207 18-104 (140)
88 PF05791 Bacillus_HBL: Bacillu 71.6 43 0.00093 30.0 9.7 87 122-208 78-169 (184)
89 PF09730 BicD: Microtubule-ass 71.5 1.4E+02 0.0031 32.8 15.0 91 128-225 373-463 (717)
90 PF04102 SlyX: SlyX; InterPro 71.3 11 0.00025 28.8 5.2 51 151-208 2-52 (69)
91 PRK09793 methyl-accepting prot 71.0 1.1E+02 0.0024 31.0 13.6 8 158-165 287-294 (533)
92 PF10168 Nup88: Nuclear pore c 70.7 38 0.00082 36.7 10.6 37 144-180 556-592 (717)
93 PRK04863 mukB cell division pr 70.7 73 0.0016 37.5 13.5 26 128-153 314-339 (1486)
94 PF10498 IFT57: Intra-flagella 70.1 23 0.00049 35.4 8.3 87 114-204 231-324 (359)
95 PF04129 Vps52: Vps52 / Sac2 f 69.6 53 0.0012 33.8 11.0 84 152-235 13-99 (508)
96 KOG1161 Protein involved in va 69.6 12 0.00025 37.1 6.0 70 125-195 45-114 (310)
97 PF14197 Cep57_CLD_2: Centroso 68.7 50 0.0011 25.7 8.2 65 143-207 2-66 (69)
98 PRK05431 seryl-tRNA synthetase 68.2 20 0.00044 36.0 7.6 65 144-212 33-97 (425)
99 PF04156 IncA: IncA protein; 68.2 82 0.0018 27.4 12.7 18 190-207 132-149 (191)
100 PF08317 Spc7: Spc7 kinetochor 68.0 1.2E+02 0.0026 29.3 12.7 28 137-164 154-181 (325)
101 PF15397 DUF4618: Domain of un 67.6 87 0.0019 30.3 11.3 87 134-223 62-148 (258)
102 PF06008 Laminin_I: Laminin Do 67.3 85 0.0018 29.1 11.0 82 125-210 21-102 (264)
103 TIGR00996 Mtu_fam_mce virulenc 67.3 99 0.0021 28.6 11.4 7 61-67 135-141 (291)
104 PRK11166 chemotaxis regulator 66.7 86 0.0019 29.5 10.9 115 124-238 26-169 (214)
105 PF14257 DUF4349: Domain of un 66.5 17 0.00036 33.6 6.2 52 154-205 140-193 (262)
106 PF02403 Seryl_tRNA_N: Seryl-t 66.5 27 0.00059 28.0 6.7 61 145-209 35-95 (108)
107 PRK15041 methyl-accepting chem 66.5 1.5E+02 0.0032 30.4 13.4 6 127-132 253-258 (554)
108 PF08700 Vps51: Vps51/Vps67; 66.5 55 0.0012 24.9 8.1 62 144-208 24-85 (87)
109 PF06160 EzrA: Septation ring 66.4 29 0.00063 36.1 8.5 61 138-198 371-431 (560)
110 TIGR03513 GldL_gliding gliding 65.8 94 0.002 29.2 10.8 89 117-207 103-191 (202)
111 PRK02119 hypothetical protein; 65.5 26 0.00057 27.4 6.2 49 150-205 6-54 (73)
112 PRK00295 hypothetical protein; 65.4 27 0.00058 26.9 6.2 49 151-206 3-51 (68)
113 PF10226 DUF2216: Uncharacteri 65.2 1.2E+02 0.0027 28.4 12.2 38 190-227 103-143 (195)
114 TIGR00606 rad50 rad50. This fa 65.1 1.1E+02 0.0024 35.0 13.3 78 119-196 879-956 (1311)
115 PRK02224 chromosome segregatio 64.9 1.6E+02 0.0034 31.7 13.7 18 147-164 181-198 (880)
116 PF05008 V-SNARE: Vesicle tran 64.7 38 0.00083 25.6 6.9 51 127-180 2-52 (79)
117 PF01442 Apolipoprotein: Apoli 64.6 81 0.0018 26.1 10.1 16 168-183 105-120 (202)
118 PRK02793 phi X174 lysis protei 64.4 24 0.00052 27.5 5.8 51 150-207 5-55 (72)
119 PF05701 WEMBL: Weak chloropla 64.4 1.2E+02 0.0026 31.4 12.5 42 168-209 282-323 (522)
120 PRK00846 hypothetical protein; 63.8 35 0.00077 27.4 6.7 54 148-208 8-61 (77)
121 smart00787 Spc7 Spc7 kinetocho 63.8 99 0.0022 30.3 11.1 107 123-229 153-284 (312)
122 KOG0250 DNA repair protein RAD 63.7 63 0.0014 36.9 10.8 63 148-210 360-423 (1074)
123 PF15450 DUF4631: Domain of un 63.4 52 0.0011 34.8 9.6 85 114-198 333-436 (531)
124 PLN02678 seryl-tRNA synthetase 62.9 29 0.00064 35.6 7.7 63 144-210 38-100 (448)
125 TIGR01000 bacteriocin_acc bact 62.7 66 0.0014 32.2 10.0 36 135-170 161-196 (457)
126 TIGR00833 actII Transport prot 62.7 84 0.0018 34.6 11.5 48 184-231 603-650 (910)
127 KOG4674 Uncharacterized conser 62.4 47 0.001 39.8 9.9 23 135-157 805-827 (1822)
128 PF04799 Fzo_mitofusin: fzo-li 62.4 44 0.00096 30.5 7.9 64 139-209 102-165 (171)
129 PF04740 LXG: LXG domain of WX 62.0 1.1E+02 0.0024 26.8 11.4 28 184-211 141-168 (204)
130 PRK04325 hypothetical protein; 61.9 33 0.00071 26.9 6.1 51 150-207 6-56 (74)
131 COG3165 Uncharacterized protei 61.8 32 0.00069 32.3 7.0 66 139-210 134-201 (204)
132 PHA03386 P10 fibrous body prot 61.8 20 0.00043 30.0 5.1 24 186-209 10-33 (94)
133 PRK10698 phage shock protein P 61.3 82 0.0018 29.2 9.6 80 130-214 97-185 (222)
134 COG1842 PspA Phage shock prote 61.2 99 0.0021 29.0 10.2 92 117-213 88-184 (225)
135 COG2900 SlyX Uncharacterized p 61.2 32 0.00069 27.6 5.9 37 148-184 3-39 (72)
136 PF10883 DUF2681: Protein of u 61.2 5.3 0.00012 32.7 1.7 15 99-113 12-26 (87)
137 PRK00736 hypothetical protein; 61.1 33 0.00071 26.5 5.9 49 151-206 3-51 (68)
138 PF00509 Hemagglutinin: Haemag 61.0 7.6 0.00017 41.0 3.2 62 121-182 364-432 (550)
139 PF09403 FadA: Adhesion protei 61.0 1.1E+02 0.0024 26.5 11.6 82 124-205 23-110 (126)
140 TIGR03185 DNA_S_dndD DNA sulfu 60.8 1.2E+02 0.0026 31.9 11.8 35 173-207 434-468 (650)
141 PF03908 Sec20: Sec20; InterP 60.6 83 0.0018 24.9 9.4 60 138-201 4-63 (92)
142 KOG0161 Myosin class II heavy 60.4 67 0.0015 38.9 10.8 79 130-208 1363-1441(1930)
143 PF05384 DegS: Sensor protein 60.2 95 0.0021 27.9 9.5 49 153-201 6-54 (159)
144 COG3883 Uncharacterized protei 60.0 52 0.0011 32.0 8.3 55 155-209 33-87 (265)
145 PRK03918 chromosome segregatio 59.7 1.1E+02 0.0024 32.6 11.5 11 153-163 640-650 (880)
146 PRK02224 chromosome segregatio 59.6 1.6E+02 0.0035 31.6 12.7 16 16-31 129-144 (880)
147 PRK10803 tol-pal system protei 59.6 25 0.00054 33.2 6.1 33 173-205 67-99 (263)
148 TIGR03185 DNA_S_dndD DNA sulfu 59.6 87 0.0019 32.9 10.6 43 151-193 426-468 (650)
149 KOG2180 Late Golgi protein sor 59.6 42 0.0009 37.0 8.3 23 145-167 39-61 (793)
150 KOG2264 Exostosin EXT1L [Signa 59.6 46 0.00099 36.2 8.5 40 162-201 81-120 (907)
151 PRK09110 flagellar motor prote 59.0 58 0.0013 31.5 8.5 93 94-188 5-106 (283)
152 PF10168 Nup88: Nuclear pore c 59.0 1.2E+02 0.0026 33.0 11.7 49 175-223 573-621 (717)
153 PF15450 DUF4631: Domain of un 58.9 90 0.0019 33.2 10.3 44 124-167 336-379 (531)
154 KOG4117 Heat shock factor bind 58.8 54 0.0012 26.1 6.8 46 122-167 10-55 (73)
155 PF03962 Mnd1: Mnd1 family; I 58.7 1.4E+02 0.0031 27.0 10.8 38 113-153 57-94 (188)
156 PRK03918 chromosome segregatio 58.5 68 0.0015 34.1 9.7 62 136-197 159-223 (880)
157 cd00193 t_SNARE Soluble NSF (N 58.4 54 0.0012 22.6 6.3 42 153-194 6-47 (60)
158 cd00632 Prefoldin_beta Prefold 57.9 26 0.00057 28.3 5.2 15 61-75 18-32 (105)
159 PRK06975 bifunctional uroporph 57.6 64 0.0014 34.4 9.3 17 189-205 439-455 (656)
160 PRK10499 PTS system N,N'-diace 57.6 5.1 0.00011 33.0 1.0 74 7-85 5-82 (106)
161 COG3750 Uncharacterized protei 57.6 61 0.0013 26.7 7.1 45 147-198 15-59 (85)
162 PF05701 WEMBL: Weak chloropla 57.1 74 0.0016 32.9 9.5 24 127-150 280-303 (522)
163 PRK13729 conjugal transfer pil 57.0 84 0.0018 32.9 9.7 51 161-211 70-120 (475)
164 TIGR03495 phage_LysB phage lys 56.8 15 0.00033 32.2 3.9 15 98-112 7-21 (135)
165 PF10267 Tmemb_cc2: Predicted 56.4 2.2E+02 0.0048 29.1 12.4 81 128-208 219-318 (395)
166 PF05377 FlaC_arch: Flagella a 56.4 24 0.00052 26.8 4.3 8 155-162 2-9 (55)
167 PF02994 Transposase_22: L1 tr 56.3 28 0.00061 34.5 6.1 19 187-205 171-189 (370)
168 PF09304 Cortex-I_coil: Cortex 56.2 77 0.0017 27.1 7.8 42 123-164 11-55 (107)
169 PRK10698 phage shock protein P 56.0 1.7E+02 0.0037 27.1 11.0 41 172-212 97-137 (222)
170 smart00787 Spc7 Spc7 kinetocho 55.8 2.1E+02 0.0046 28.1 12.2 78 138-215 164-245 (312)
171 TIGR02231 conserved hypothetic 55.8 1E+02 0.0023 31.4 10.1 84 126-209 69-173 (525)
172 PF09769 ApoO: Apolipoprotein 55.3 6.5 0.00014 34.0 1.3 21 7-27 96-116 (158)
173 cd07912 Tweety_N N-terminal do 55.1 60 0.0013 33.2 8.3 83 99-186 93-184 (418)
174 cd00179 SynN Syntaxin N-termin 55.1 1.1E+02 0.0024 25.3 8.7 20 128-147 6-25 (151)
175 PF15188 CCDC-167: Coiled-coil 54.7 39 0.00086 27.6 5.6 28 132-163 2-29 (85)
176 PF03233 Cauli_AT: Aphid trans 54.6 26 0.00056 31.9 5.0 41 148-188 113-156 (163)
177 PF10073 DUF2312: Uncharacteri 54.6 45 0.00097 26.8 5.8 45 148-199 6-50 (74)
178 PF10224 DUF2205: Predicted co 54.6 48 0.001 26.8 6.1 53 187-241 22-74 (80)
179 TIGR01843 type_I_hlyD type I s 54.3 2E+02 0.0043 27.4 12.6 15 61-75 86-100 (423)
180 PF05791 Bacillus_HBL: Bacillu 53.8 1.1E+02 0.0025 27.3 9.0 76 129-204 104-179 (184)
181 KOG3067 Translin family protei 53.8 58 0.0013 30.8 7.3 100 132-231 6-110 (226)
182 PLN03094 Substrate binding sub 53.7 56 0.0012 32.9 7.7 16 59-74 230-245 (370)
183 PF03148 Tektin: Tektin family 53.5 2.1E+02 0.0046 28.5 11.6 17 117-133 201-217 (384)
184 PF10779 XhlA: Haemolysin XhlA 53.5 48 0.001 25.3 5.7 15 150-164 3-17 (71)
185 PF04111 APG6: Autophagy prote 53.2 1.1E+02 0.0023 29.9 9.4 68 142-209 67-134 (314)
186 TIGR01010 BexC_CtrB_KpsE polys 53.0 2.2E+02 0.0048 27.4 13.7 84 122-205 164-259 (362)
187 PF07106 TBPIP: Tat binding pr 52.9 80 0.0017 27.4 7.7 45 165-209 91-137 (169)
188 PRK04098 sec-independent trans 52.8 42 0.00091 30.3 6.0 57 124-181 23-79 (158)
189 PF06295 DUF1043: Protein of u 52.8 41 0.0009 28.6 5.8 38 139-176 29-66 (128)
190 PF06148 COG2: COG (conserved 52.5 23 0.0005 29.6 4.2 47 125-171 66-112 (133)
191 PF07851 TMPIT: TMPIT-like pro 52.3 1.1E+02 0.0024 30.6 9.4 45 139-183 11-55 (330)
192 KOG4593 Mitotic checkpoint pro 52.3 1.9E+02 0.0041 31.9 11.7 102 124-225 115-216 (716)
193 cd07651 F-BAR_PombeCdc15_like 52.2 1.9E+02 0.004 26.4 12.1 38 116-153 95-132 (236)
194 PF04100 Vps53_N: Vps53-like, 52.2 2E+02 0.0044 28.8 11.3 60 129-188 26-99 (383)
195 TIGR00634 recN DNA repair prot 52.2 1.1E+02 0.0024 31.6 9.8 32 128-159 266-297 (563)
196 TIGR00634 recN DNA repair prot 52.1 95 0.0021 32.1 9.3 91 117-210 251-344 (563)
197 KOG0240 Kinesin (SMY1 subfamil 52.0 1.5E+02 0.0033 31.9 10.8 84 117-200 385-475 (607)
198 KOG0994 Extracellular matrix g 52.0 2.1E+02 0.0045 33.9 12.2 52 177-228 1580-1631(1758)
199 PF08580 KAR9: Yeast cortical 52.0 59 0.0013 35.2 8.0 45 113-157 12-58 (683)
200 PF07439 DUF1515: Protein of u 51.9 72 0.0016 27.5 7.0 54 131-184 4-64 (112)
201 PF00038 Filament: Intermediat 51.8 1.6E+02 0.0036 27.4 10.1 72 142-213 64-135 (312)
202 PF02646 RmuC: RmuC family; I 51.7 76 0.0017 30.5 8.0 17 254-270 100-116 (304)
203 PF05266 DUF724: Protein of un 51.6 1.9E+02 0.0042 26.4 10.4 59 148-206 126-184 (190)
204 PHA01750 hypothetical protein 51.2 28 0.00061 27.8 4.1 31 118-148 24-55 (75)
205 PF07295 DUF1451: Protein of u 51.2 63 0.0014 28.5 6.8 52 138-192 3-58 (146)
206 TIGR01916 F420_cofE F420-0:gam 51.0 13 0.00029 35.4 2.8 72 63-135 126-202 (243)
207 PF06005 DUF904: Protein of un 50.4 78 0.0017 24.9 6.5 63 137-206 9-71 (72)
208 COG5283 Phage-related tail pro 50.2 1.5E+02 0.0032 34.5 10.9 90 126-215 27-119 (1213)
209 PF04380 BMFP: Membrane fusoge 50.1 1.2E+02 0.0026 23.9 7.6 24 187-210 49-72 (79)
210 PF04906 Tweety: Tweety; Inte 50.0 1.3E+02 0.0028 30.3 9.6 86 100-187 74-162 (406)
211 PHA03395 p10 fibrous body prot 49.3 51 0.0011 27.3 5.5 9 155-163 13-21 (87)
212 PF06156 DUF972: Protein of un 49.2 73 0.0016 26.8 6.6 30 123-152 3-32 (107)
213 TIGR00414 serS seryl-tRNA synt 49.2 1.5E+02 0.0033 29.8 10.0 67 143-213 34-101 (418)
214 PF02646 RmuC: RmuC family; I 49.0 74 0.0016 30.6 7.5 40 126-165 4-43 (304)
215 PRK11519 tyrosine kinase; Prov 48.9 3.1E+02 0.0067 29.4 12.7 25 127-151 266-290 (719)
216 COG2959 HemX Uncharacterized e 48.8 75 0.0016 32.5 7.7 57 99-164 43-101 (391)
217 PF10046 BLOC1_2: Biogenesis o 48.8 1.5E+02 0.0031 24.1 11.0 14 217-230 81-94 (99)
218 cd07667 BAR_SNX30 The Bin/Amph 48.8 1.4E+02 0.0031 28.5 9.2 76 150-225 55-130 (240)
219 PF11945 WASH_WAHD: WAHD domai 48.3 76 0.0016 31.0 7.5 54 128-181 18-71 (297)
220 PF06936 Selenoprotein_S: Sele 48.3 46 0.001 30.6 5.7 62 94-156 36-97 (190)
221 KOG3385 V-SNARE [Intracellular 48.2 51 0.0011 28.6 5.6 66 152-222 35-100 (118)
222 PF06009 Laminin_II: Laminin D 48.0 6 0.00013 33.7 0.0 30 184-213 55-84 (138)
223 PF04012 PspA_IM30: PspA/IM30 48.0 2.1E+02 0.0045 25.7 10.3 42 124-165 94-138 (221)
224 PF03114 BAR: BAR domain; Int 48.0 1.1E+02 0.0024 26.0 7.7 17 59-75 29-45 (229)
225 PF10359 Fmp27_WPPW: RNA pol I 47.9 61 0.0013 33.1 7.1 53 150-207 167-219 (475)
226 COG3074 Uncharacterized protei 47.8 1.5E+02 0.0033 24.0 8.2 67 155-221 6-72 (79)
227 PF00804 Syntaxin: Syntaxin; 47.8 1.2E+02 0.0026 22.9 10.4 34 126-159 5-38 (103)
228 TIGR01005 eps_transp_fam exopo 47.8 3.7E+02 0.0081 28.6 14.1 15 61-75 199-213 (754)
229 smart00502 BBC B-Box C-termina 47.7 1.3E+02 0.0029 23.4 10.4 35 128-162 21-55 (127)
230 PF03915 AIP3: Actin interacti 47.7 3.4E+02 0.0073 28.0 12.7 66 120-185 205-271 (424)
231 PF10241 KxDL: Uncharacterized 47.5 1.4E+02 0.003 23.9 7.7 54 133-186 23-76 (88)
232 PRK11032 hypothetical protein; 47.1 69 0.0015 28.9 6.5 49 137-188 12-64 (160)
233 PF12352 V-SNARE_C: Snare regi 47.0 1.1E+02 0.0024 22.4 6.9 43 155-197 10-52 (66)
234 PF02994 Transposase_22: L1 tr 46.3 33 0.00072 34.0 4.8 43 173-215 150-192 (370)
235 PF05667 DUF812: Protein of un 46.2 1.5E+02 0.0033 31.6 9.9 87 124-210 397-483 (594)
236 cd07628 BAR_Atg24p The Bin/Amp 45.8 1.5E+02 0.0032 26.6 8.4 74 150-223 8-82 (185)
237 PF12761 End3: Actin cytoskele 45.8 1.6E+02 0.0035 27.5 8.9 28 178-205 157-184 (195)
238 PF11559 ADIP: Afadin- and alp 45.8 1.9E+02 0.0041 24.6 13.0 84 123-207 30-113 (151)
239 KOG1298 Squalene monooxygenase 45.7 7.8 0.00017 40.2 0.4 18 9-26 48-69 (509)
240 PF10392 COG5: Golgi transport 45.6 1.9E+02 0.004 24.5 11.6 36 127-162 25-60 (132)
241 KOG0996 Structural maintenance 45.6 1.1E+02 0.0023 35.7 8.9 71 139-209 398-468 (1293)
242 PF07957 DUF3294: Protein of u 45.5 1.9E+02 0.0041 27.5 9.4 35 147-181 5-39 (216)
243 PF10018 Med4: Vitamin-D-recep 45.4 1.1E+02 0.0024 27.4 7.6 87 135-232 9-97 (188)
244 PRK10869 recombination and rep 45.4 1.4E+02 0.0031 31.2 9.4 90 114-207 241-336 (553)
245 PF12777 MT: Microtubule-bindi 45.3 96 0.0021 30.2 7.7 58 126-183 219-279 (344)
246 COG2433 Uncharacterized conser 45.3 1.3E+02 0.0029 32.6 9.2 66 136-201 419-487 (652)
247 PRK10803 tol-pal system protei 45.2 99 0.0021 29.2 7.6 62 152-220 39-100 (263)
248 KOG0976 Rho/Rac1-interacting s 45.0 2.9E+02 0.0063 31.6 11.8 97 130-226 279-375 (1265)
249 cd07596 BAR_SNX The Bin/Amphip 44.7 2E+02 0.0044 24.6 13.2 48 124-174 60-107 (218)
250 PRK13694 hypothetical protein; 44.6 1.1E+02 0.0024 25.2 6.7 46 147-199 13-58 (83)
251 PF04912 Dynamitin: Dynamitin 44.5 1E+02 0.0022 30.4 7.9 15 61-75 130-144 (388)
252 COG1463 Ttg2C ABC-type transpo 44.5 2.5E+02 0.0054 27.5 10.5 74 134-207 217-290 (359)
253 PF10234 Cluap1: Clusterin-ass 44.4 2.1E+02 0.0046 27.8 9.7 77 128-205 124-200 (267)
254 TIGR02338 gimC_beta prefoldin, 44.3 49 0.0011 27.1 4.8 21 119-140 59-79 (110)
255 PF10602 RPN7: 26S proteasome 44.3 64 0.0014 28.5 5.9 57 143-201 4-60 (177)
256 cd07621 BAR_SNX5_6 The Bin/Amp 44.0 1E+02 0.0022 29.0 7.3 77 117-196 48-125 (219)
257 KOG2391 Vacuolar sorting prote 43.8 2.7E+02 0.0058 28.5 10.6 68 117-185 218-285 (365)
258 TIGR03017 EpsF chain length de 43.8 3.2E+02 0.007 26.7 12.9 15 61-75 176-190 (444)
259 COG4717 Uncharacterized conser 43.6 2.4E+02 0.0051 32.2 11.0 117 119-242 734-865 (984)
260 PF02520 DUF148: Domain of unk 43.6 1.1E+02 0.0024 24.8 6.8 25 129-153 48-72 (113)
261 KOG2911 Uncharacterized conser 43.4 2.2E+02 0.0047 29.8 10.1 84 125-209 237-355 (439)
262 COG1256 FlgK Flagellar hook-as 43.4 1.7E+02 0.0037 31.0 9.6 82 121-206 131-212 (552)
263 COG0497 RecN ATPase involved i 43.1 1.5E+02 0.0032 31.8 9.1 113 114-226 242-366 (557)
264 PF12732 YtxH: YtxH-like prote 43.1 66 0.0014 24.5 5.1 33 119-152 18-50 (74)
265 PF07888 CALCOCO1: Calcium bin 43.0 2.8E+02 0.0061 29.7 11.1 39 176-214 285-323 (546)
266 COG1511 Predicted membrane pro 42.9 2.6E+02 0.0056 30.5 11.2 105 124-228 147-260 (780)
267 cd07622 BAR_SNX4 The Bin/Amphi 42.8 2.7E+02 0.0058 25.5 10.4 68 110-189 58-125 (201)
268 PF01920 Prefoldin_2: Prefoldi 42.4 70 0.0015 24.9 5.2 35 147-181 63-97 (106)
269 KOG0996 Structural maintenance 42.4 1.5E+02 0.0033 34.6 9.5 93 144-237 961-1054(1293)
270 PF06320 GCN5L1: GCN5-like pro 42.3 2.2E+02 0.0047 24.3 8.9 53 160-212 40-92 (121)
271 TIGR02132 phaR_Bmeg polyhydrox 42.2 1.1E+02 0.0023 28.6 7.0 49 145-193 78-133 (189)
272 COG1283 NptA Na+/phosphate sym 42.0 3.3E+02 0.0072 29.0 11.4 97 123-226 337-449 (533)
273 PF03670 UPF0184: Uncharacteri 42.0 94 0.002 25.5 6.0 47 130-180 28-74 (83)
274 PRK06569 F0F1 ATP synthase sub 41.9 2.6E+02 0.0056 25.1 9.7 50 140-189 35-84 (155)
275 TIGR02231 conserved hypothetic 41.8 1.7E+02 0.0036 29.9 9.1 89 128-216 67-166 (525)
276 PF06730 FAM92: FAM92 protein; 41.8 3.1E+02 0.0068 26.1 10.2 95 125-226 15-110 (219)
277 PF09748 Med10: Transcription 41.6 2.2E+02 0.0048 24.2 8.6 45 127-171 2-51 (128)
278 cd07624 BAR_SNX7_30 The Bin/Am 41.5 1.9E+02 0.0041 26.0 8.5 43 150-192 18-60 (200)
279 PF10146 zf-C4H2: Zinc finger- 41.3 3.1E+02 0.0068 25.9 12.2 45 162-206 34-78 (230)
280 PF09177 Syntaxin-6_N: Syntaxi 41.2 1.8E+02 0.004 23.1 10.9 10 164-173 36-45 (97)
281 PF12329 TMF_DNA_bd: TATA elem 41.2 1.7E+02 0.0037 22.8 8.5 66 158-223 3-68 (74)
282 TIGR02976 phageshock_pspB phag 41.1 21 0.00045 28.5 2.0 43 119-164 25-67 (75)
283 PF08172 CASP_C: CASP C termin 40.9 81 0.0018 30.0 6.3 45 138-182 78-122 (248)
284 PF00261 Tropomyosin: Tropomyo 40.8 2.9E+02 0.0064 25.4 12.7 26 123-148 80-105 (237)
285 PF04111 APG6: Autophagy prote 40.7 3.5E+02 0.0077 26.3 10.8 81 142-229 53-133 (314)
286 TIGR03017 EpsF chain length de 40.4 3.6E+02 0.0079 26.4 12.8 9 224-232 361-369 (444)
287 TIGR01000 bacteriocin_acc bact 40.3 2.7E+02 0.0059 27.9 10.2 13 14-26 67-79 (457)
288 KOG4603 TBP-1 interacting prot 40.3 1.4E+02 0.003 28.0 7.4 60 150-209 83-144 (201)
289 PF04791 LMBR1: LMBR1-like mem 40.2 88 0.0019 31.0 6.7 52 92-147 166-222 (471)
290 COG1730 GIM5 Predicted prefold 40.2 46 0.001 29.5 4.3 42 121-162 87-131 (145)
291 PF04108 APG17: Autophagy prot 40.2 4E+02 0.0087 26.8 12.5 25 121-145 203-227 (412)
292 COG3352 FlaC Putative archaeal 40.1 1.6E+02 0.0035 26.8 7.7 79 115-194 63-142 (157)
293 PRK01919 tatB sec-independent 40.0 2.1E+02 0.0046 26.3 8.5 32 124-155 23-54 (169)
294 KOG0804 Cytoplasmic Zn-finger 40.0 2.8E+02 0.0062 29.3 10.4 53 131-183 367-419 (493)
295 cd05564 PTS_IIB_chitobiose_lic 39.8 7.7 0.00017 31.1 -0.6 73 7-84 1-79 (96)
296 TIGR02977 phageshock_pspA phag 39.7 2.9E+02 0.0063 25.2 9.5 25 188-212 159-183 (219)
297 KOG1029 Endocytic adaptor prot 39.7 79 0.0017 35.6 6.7 66 132-197 437-502 (1118)
298 PF06248 Zw10: Centromere/kine 39.7 3.7E+02 0.008 28.0 11.3 52 150-201 50-103 (593)
299 TIGR03818 MotA1 flagellar moto 39.6 1.2E+02 0.0026 29.3 7.3 93 94-188 5-106 (282)
300 PF06009 Laminin_II: Laminin D 39.5 9.8 0.00021 32.5 0.0 62 153-214 17-78 (138)
301 PF10267 Tmemb_cc2: Predicted 39.3 3.4E+02 0.0073 27.8 10.7 64 142-205 222-293 (395)
302 cd07630 BAR_SNX_like The Bin/A 39.3 1.5E+02 0.0032 27.2 7.5 81 117-197 28-109 (198)
303 TIGR00606 rad50 rad50. This fa 39.2 4.1E+02 0.009 30.6 12.5 22 152-173 940-961 (1311)
304 PF04375 HemX: HemX; InterPro 39.1 66 0.0014 31.8 5.6 109 97-209 40-168 (372)
305 PF15290 Syntaphilin: Golgi-lo 38.9 1.1E+02 0.0024 30.3 7.0 29 178-206 114-142 (305)
306 PF11460 DUF3007: Protein of u 38.9 24 0.00052 30.0 2.2 66 92-172 36-102 (104)
307 PF05802 EspB: Enterobacterial 38.8 3.1E+02 0.0067 27.4 9.9 61 147-207 148-208 (317)
308 PF04108 APG17: Autophagy prot 38.7 3.2E+02 0.007 27.5 10.4 34 120-153 198-231 (412)
309 cd07667 BAR_SNX30 The Bin/Amph 38.6 3.6E+02 0.0078 25.8 13.3 31 124-154 103-133 (240)
310 KOG0161 Myosin class II heavy 38.6 5.6E+02 0.012 31.6 13.7 47 118-164 898-947 (1930)
311 PRK11091 aerobic respiration c 38.5 4.9E+02 0.011 27.3 14.9 33 133-165 90-122 (779)
312 PF10280 Med11: Mediator compl 38.4 2.1E+02 0.0046 23.9 7.8 63 153-225 6-75 (117)
313 PF11802 CENP-K: Centromere-as 38.3 4E+02 0.0086 26.2 13.2 125 61-226 57-182 (268)
314 PF04799 Fzo_mitofusin: fzo-li 38.3 1.7E+02 0.0038 26.8 7.7 56 132-187 102-164 (171)
315 PF04344 CheZ: Chemotaxis phos 38.2 3.3E+02 0.0071 25.2 11.3 51 193-243 109-162 (214)
316 COG5143 SNC1 Synaptobrevin/VAM 38.0 1.2E+02 0.0026 28.3 6.7 55 133-187 127-184 (190)
317 TIGR02492 flgK_ends flagellar 37.9 2.9E+02 0.0063 26.6 9.6 56 121-176 127-182 (322)
318 PF01920 Prefoldin_2: Prefoldi 37.8 1.9E+02 0.0042 22.4 8.9 24 142-165 8-31 (106)
319 PRK09841 cryptic autophosphory 37.7 5.4E+02 0.012 27.7 12.4 29 136-164 257-285 (726)
320 PF08702 Fib_alpha: Fibrinogen 37.6 2.8E+02 0.0061 24.3 11.8 96 115-210 23-126 (146)
321 TIGR00414 serS seryl-tRNA synt 37.1 1.5E+02 0.0032 30.0 7.8 73 153-225 30-106 (418)
322 KOG3091 Nuclear pore complex, 36.8 1.5E+02 0.0032 31.4 7.9 65 149-213 337-401 (508)
323 cd07625 BAR_Vps17p The Bin/Amp 36.8 3.7E+02 0.0079 25.4 9.9 71 119-195 44-119 (230)
324 PF06148 COG2: COG (conserved 36.8 89 0.0019 26.1 5.3 6 79-84 47-52 (133)
325 PF13874 Nup54: Nucleoporin co 36.7 1.1E+02 0.0024 26.2 6.0 80 124-207 54-136 (141)
326 KOG4674 Uncharacterized conser 36.7 5.2E+02 0.011 31.7 12.9 79 124-205 776-854 (1822)
327 TIGR03007 pepcterm_ChnLen poly 36.6 4.5E+02 0.0097 26.3 11.8 15 61-75 166-180 (498)
328 COG5185 HEC1 Protein involved 36.6 2E+02 0.0043 30.8 8.7 61 109-169 361-423 (622)
329 COG0598 CorA Mg2+ and Co2+ tra 36.6 3.4E+02 0.0074 26.0 9.9 91 117-207 143-246 (322)
330 KOG0809 SNARE protein TLG2/Syn 36.6 2.6E+02 0.0056 27.9 9.1 101 123-223 134-271 (305)
331 cd07647 F-BAR_PSTPIP The F-BAR 36.5 3.4E+02 0.0074 24.9 10.6 42 117-158 95-136 (239)
332 PHA03395 p10 fibrous body prot 36.4 1.2E+02 0.0026 25.2 5.7 20 128-147 11-30 (87)
333 COG1463 Ttg2C ABC-type transpo 36.3 2.4E+02 0.0053 27.5 9.0 28 210-238 262-289 (359)
334 PRK13729 conjugal transfer pil 36.3 74 0.0016 33.3 5.7 50 159-208 59-110 (475)
335 COG4026 Uncharacterized protei 36.1 1.2E+02 0.0027 29.5 6.7 8 123-130 109-116 (290)
336 COG2096 cob(I)alamin adenosylt 36.1 95 0.0021 28.7 5.8 62 137-208 38-101 (184)
337 PF06825 HSBP1: Heat shock fac 36.1 92 0.002 23.5 4.7 29 137-165 12-40 (54)
338 PF14817 HAUS5: HAUS augmin-li 35.8 3E+02 0.0065 29.9 10.2 83 148-230 81-163 (632)
339 PF05377 FlaC_arch: Flagella a 35.7 1E+02 0.0022 23.5 4.9 9 153-161 7-15 (55)
340 PF04124 Dor1: Dor1-like famil 35.7 4.2E+02 0.009 25.7 10.8 69 142-210 17-89 (338)
341 PHA02414 hypothetical protein 35.7 1.2E+02 0.0027 25.9 5.9 70 151-230 9-78 (111)
342 PF02403 Seryl_tRNA_N: Seryl-t 35.7 2.3E+02 0.0049 22.6 10.0 70 154-223 30-102 (108)
343 PF02302 PTS_IIB: PTS system, 35.6 10 0.00023 28.7 -0.4 18 7-24 1-18 (90)
344 COG4477 EzrA Negative regulato 35.4 2.4E+02 0.0052 30.4 9.2 81 125-209 278-361 (570)
345 PRK15422 septal ring assembly 35.2 2.5E+02 0.0054 23.0 8.0 63 156-218 7-69 (79)
346 PF04012 PspA_IM30: PspA/IM30 35.2 2.4E+02 0.0052 25.2 8.2 15 61-75 28-42 (221)
347 PRK00846 hypothetical protein; 35.2 2.2E+02 0.0047 22.9 7.0 31 177-207 16-46 (77)
348 cd00024 CHROMO Chromatin organ 35.2 35 0.00077 23.4 2.3 24 106-129 22-45 (55)
349 cd00632 Prefoldin_beta Prefold 35.1 1.5E+02 0.0032 24.0 6.2 16 60-75 10-25 (105)
350 PHA03332 membrane glycoprotein 35.0 3.2E+02 0.007 31.9 10.5 36 168-203 924-963 (1328)
351 KOG1961 Vacuolar sorting prote 34.8 1.6E+02 0.0035 32.1 7.9 56 150-205 72-127 (683)
352 cd07595 BAR_RhoGAP_Rich-like T 34.8 3.9E+02 0.0085 25.2 9.8 58 132-189 111-180 (244)
353 PF13747 DUF4164: Domain of un 34.8 2.5E+02 0.0053 22.7 9.7 50 170-219 35-84 (89)
354 PF05739 SNARE: SNARE domain; 34.7 1.7E+02 0.0037 20.9 8.6 37 171-207 8-44 (63)
355 PF06156 DUF972: Protein of un 34.7 79 0.0017 26.6 4.6 55 148-202 3-57 (107)
356 KOG0978 E3 ubiquitin ligase in 34.6 4.2E+02 0.009 29.3 11.0 83 125-207 535-620 (698)
357 PF13094 CENP-Q: CENP-Q, a CEN 34.6 2.2E+02 0.0048 24.5 7.6 63 141-210 22-84 (160)
358 TIGR02680 conserved hypothetic 34.1 5.9E+02 0.013 29.8 12.7 43 169-211 923-965 (1353)
359 PLN02320 seryl-tRNA synthetase 34.1 2.2E+02 0.0047 30.1 8.6 92 110-210 63-159 (502)
360 PF05478 Prominin: Prominin; 33.7 5.6E+02 0.012 28.0 12.0 34 118-151 159-196 (806)
361 KOG2629 Peroxisomal membrane a 33.6 97 0.0021 30.8 5.7 15 61-75 39-56 (300)
362 KOG0860 Synaptobrevin/VAMP-lik 33.6 3.2E+02 0.007 23.7 9.2 65 152-216 28-92 (116)
363 PHA00276 phage lambda Rz-like 33.6 1.3E+02 0.0027 27.1 5.9 31 161-191 50-80 (144)
364 PF06320 GCN5L1: GCN5-like pro 33.5 3E+02 0.0066 23.4 10.1 47 149-196 57-107 (121)
365 PF05508 Ran-binding: RanGTP-b 33.5 2.8E+02 0.0061 27.6 8.8 47 119-165 14-68 (302)
366 PF04102 SlyX: SlyX; InterPro 33.4 1.5E+02 0.0033 22.6 5.7 32 176-207 6-37 (69)
367 PF03233 Cauli_AT: Aphid trans 33.3 3.1E+02 0.0067 25.1 8.4 21 191-211 138-158 (163)
368 KOG0995 Centromere-associated 33.2 4.6E+02 0.01 28.4 10.8 102 115-220 215-336 (581)
369 PF08614 ATG16: Autophagy prot 33.0 2.4E+02 0.0052 25.2 7.7 51 143-193 120-170 (194)
370 COG0172 SerS Seryl-tRNA synthe 33.0 1.4E+02 0.0031 30.8 7.0 62 144-208 34-95 (429)
371 KOG4670 Uncharacterized conser 32.9 54 0.0012 35.0 4.0 82 139-223 368-451 (602)
372 KOG0995 Centromere-associated 32.6 3E+02 0.0066 29.7 9.4 98 110-209 184-294 (581)
373 PF04728 LPP: Lipoprotein leuc 32.5 2.1E+02 0.0045 21.9 6.2 11 184-194 20-30 (56)
374 PF07106 TBPIP: Tat binding pr 32.5 1.4E+02 0.0031 25.9 6.1 59 126-188 77-137 (169)
375 PF09738 DUF2051: Double stran 32.5 2.1E+02 0.0045 28.2 7.8 73 146-220 105-177 (302)
376 PF10174 Cast: RIM-binding pro 32.3 4.3E+02 0.0093 29.4 10.8 80 126-205 313-402 (775)
377 PRK01156 chromosome segregatio 32.3 4.6E+02 0.0099 28.5 11.0 26 136-161 163-188 (895)
378 PF02388 FemAB: FemAB family; 32.2 81 0.0018 31.4 5.1 29 121-149 235-263 (406)
379 PRK15396 murein lipoprotein; P 32.2 1.7E+02 0.0037 23.6 5.9 23 154-176 33-55 (78)
380 PRK15396 murein lipoprotein; P 32.0 1.3E+02 0.0029 24.1 5.3 10 212-221 63-72 (78)
381 KOG4515 Uncharacterized conser 32.0 4.5E+02 0.0098 25.0 10.3 53 124-176 91-143 (217)
382 PRK10807 paraquat-inducible pr 31.9 1.5E+02 0.0032 31.2 7.0 15 225-239 520-534 (547)
383 smart00298 CHROMO Chromatin or 31.9 50 0.0011 22.5 2.6 24 105-128 19-42 (55)
384 PRK01203 prefoldin subunit alp 31.9 2.9E+02 0.0063 24.2 7.8 35 99-146 71-105 (130)
385 PF09763 Sec3_C: Exocyst compl 31.9 2.3E+02 0.005 30.1 8.6 13 287-299 200-212 (701)
386 PF00732 GMC_oxred_N: GMC oxid 31.8 13 0.00029 33.6 -0.4 16 9-24 3-18 (296)
387 PF01494 FAD_binding_3: FAD bi 31.8 14 0.00029 33.2 -0.4 14 9-22 4-17 (356)
388 KOG2196 Nuclear porin [Nuclear 31.7 2.6E+02 0.0056 27.3 8.0 70 141-210 84-156 (254)
389 COG4026 Uncharacterized protei 31.7 3.1E+02 0.0067 26.8 8.5 69 163-231 138-206 (290)
390 PRK04098 sec-independent trans 31.5 4E+02 0.0087 24.2 9.2 48 122-169 39-90 (158)
391 PF15619 Lebercilin: Ciliary p 31.3 3E+02 0.0065 25.2 8.2 20 148-167 120-139 (194)
392 PRK13169 DNA replication intia 30.7 99 0.0021 26.3 4.6 32 122-153 2-33 (110)
393 PF07544 Med9: RNA polymerase 30.6 1.5E+02 0.0033 23.4 5.4 56 131-187 24-79 (83)
394 PF11285 DUF3086: Protein of u 30.6 5.4E+02 0.012 25.5 10.8 80 146-241 4-83 (283)
395 PRK07739 flgK flagellar hook-a 30.6 3.5E+02 0.0076 27.9 9.4 44 121-164 139-182 (507)
396 PF14182 YgaB: YgaB-like prote 30.5 3E+02 0.0066 22.5 7.4 47 153-199 14-65 (79)
397 PRK13169 DNA replication intia 30.5 2E+02 0.0043 24.5 6.4 52 148-199 3-54 (110)
398 PRK09458 pspB phage shock prot 30.5 35 0.00076 27.5 1.8 44 118-164 24-67 (75)
399 PRK12482 flagellar motor prote 30.4 2.6E+02 0.0055 27.4 8.0 93 94-188 5-106 (287)
400 TIGR00383 corA magnesium Mg(2+ 30.4 4.6E+02 0.0099 24.5 10.2 84 125-208 146-243 (318)
401 PF13805 Pil1: Eisosome compon 30.3 5.3E+02 0.012 25.2 11.5 79 127-209 95-179 (271)
402 PF06705 SF-assemblin: SF-asse 30.2 4.4E+02 0.0096 24.3 12.6 35 124-158 88-122 (247)
403 PF10191 COG7: Golgi complex c 30.2 4.3E+02 0.0093 28.9 10.4 61 131-191 41-101 (766)
404 KOG4514 Uncharacterized conser 30.2 4.5E+02 0.0097 25.0 9.1 29 174-202 192-220 (222)
405 KOG4559 Uncharacterized conser 30.1 1.5E+02 0.0033 25.6 5.6 49 125-173 58-106 (120)
406 PF01601 Corona_S2: Coronaviru 30.0 1.8E+02 0.0038 31.6 7.2 67 125-212 256-322 (610)
407 PRK07191 flgK flagellar hook-a 30.0 3.8E+02 0.0082 27.2 9.4 36 121-156 127-162 (456)
408 TIGR02894 DNA_bind_RsfA transc 29.9 4.3E+02 0.0094 24.1 11.5 84 142-225 61-148 (161)
409 TIGR02135 phoU_full phosphate 29.8 3.4E+02 0.0075 22.9 11.5 52 115-166 3-54 (212)
410 PRK04863 mukB cell division pr 29.8 7.8E+02 0.017 29.5 12.9 17 59-75 233-249 (1486)
411 PRK10361 DNA recombination pro 29.7 5.5E+02 0.012 27.0 10.7 114 96-223 7-120 (475)
412 PF05667 DUF812: Protein of un 29.6 4.2E+02 0.0092 28.4 10.0 8 38-45 101-108 (594)
413 PF00957 Synaptobrevin: Synapt 29.6 2.7E+02 0.0058 21.6 9.5 20 138-157 6-25 (89)
414 TIGR01554 major_cap_HK97 phage 29.6 1.9E+02 0.0042 28.0 7.1 12 256-267 114-125 (378)
415 PLN03094 Substrate binding sub 29.6 1.4E+02 0.003 30.1 6.2 25 176-200 339-366 (370)
416 KOG2391 Vacuolar sorting prote 29.3 3.2E+02 0.007 27.9 8.6 43 178-220 236-278 (365)
417 PF13514 AAA_27: AAA domain 29.3 3.4E+02 0.0073 30.6 9.7 92 142-238 892-983 (1111)
418 PRK06665 flgK flagellar hook-a 29.3 3.6E+02 0.0077 28.8 9.4 57 121-177 139-195 (627)
419 KOG4677 Golgi integral membran 29.3 5.1E+02 0.011 27.7 10.2 40 173-212 308-347 (554)
420 COG1579 Zn-ribbon protein, pos 29.3 5.2E+02 0.011 24.8 12.5 15 149-163 62-76 (239)
421 KOG3595 Dyneins, heavy chain [ 29.3 4.9E+02 0.011 30.6 11.1 89 114-202 893-997 (1395)
422 TIGR03752 conj_TIGR03752 integ 29.2 3.9E+02 0.0084 28.2 9.4 58 144-207 85-142 (472)
423 KOG0994 Extracellular matrix g 29.2 2.7E+02 0.0057 33.1 8.7 51 158-208 1244-1294(1758)
424 PHA03386 P10 fibrous body prot 29.0 1.6E+02 0.0035 24.7 5.5 32 173-208 25-56 (94)
425 PF12777 MT: Microtubule-bindi 28.9 4.4E+02 0.0095 25.7 9.4 9 101-109 194-202 (344)
426 PF09789 DUF2353: Uncharacteri 28.8 4.4E+02 0.0096 26.3 9.4 70 131-200 29-112 (319)
427 PRK11115 transcriptional regul 28.8 4.2E+02 0.009 23.5 9.0 46 121-166 20-65 (236)
428 PF10186 Atg14: UV radiation r 28.6 4.5E+02 0.0097 23.8 13.3 43 153-195 63-105 (302)
429 PF07160 DUF1395: Protein of u 28.6 2.5E+02 0.0054 26.6 7.4 27 179-205 20-46 (243)
430 PF06120 Phage_HK97_TLTM: Tail 28.6 5.9E+02 0.013 25.2 12.2 28 176-203 143-170 (301)
431 PF01996 F420_ligase: F420-0:G 28.6 22 0.00048 33.0 0.5 73 62-135 133-210 (228)
432 PLN02320 seryl-tRNA synthetase 28.6 2E+02 0.0043 30.3 7.3 30 192-221 134-163 (502)
433 PLN03223 Polycystin cation cha 28.5 2.3E+02 0.0049 33.9 8.2 91 122-217 767-859 (1634)
434 PF14257 DUF4349: Domain of un 28.4 1.6E+02 0.0036 27.1 6.1 24 174-197 169-192 (262)
435 cd07627 BAR_Vps5p The Bin/Amph 28.4 4.5E+02 0.0098 23.8 13.0 15 61-75 16-30 (216)
436 PF05266 DUF724: Protein of un 28.3 4.7E+02 0.01 24.0 9.9 54 150-203 90-146 (190)
437 COG0598 CorA Mg2+ and Co2+ tra 28.2 3.9E+02 0.0085 25.6 8.8 74 135-208 180-254 (322)
438 KOG0963 Transcription factor/C 28.2 5.5E+02 0.012 28.1 10.5 83 135-217 178-271 (629)
439 COG4064 MtrG Tetrahydromethano 28.2 92 0.002 25.1 3.7 27 188-221 15-41 (75)
440 PF03961 DUF342: Protein of un 28.2 2.6E+02 0.0057 28.1 7.9 23 128-150 334-356 (451)
441 PF02181 FH2: Formin Homology 28.0 3.6E+02 0.0078 25.9 8.5 38 189-226 310-347 (370)
442 KOG2211 Predicted Golgi transp 28.0 6.3E+02 0.014 28.3 10.9 83 112-199 55-146 (797)
443 TIGR01834 PHA_synth_III_E poly 27.9 3.3E+02 0.0071 27.3 8.3 94 115-208 195-309 (320)
444 PF02520 DUF148: Domain of unk 27.8 2.1E+02 0.0045 23.2 5.9 15 121-135 29-43 (113)
445 PF15070 GOLGA2L5: Putative go 27.7 8E+02 0.017 26.5 12.5 21 145-165 42-62 (617)
446 COG4980 GvpP Gas vesicle prote 27.7 3.2E+02 0.0069 23.6 7.2 17 184-200 93-109 (115)
447 PF05700 BCAS2: Breast carcino 27.7 4.8E+02 0.01 23.9 10.5 70 135-209 139-210 (221)
448 PF12128 DUF3584: Protein of u 27.6 5.8E+02 0.013 29.3 11.2 82 128-209 288-380 (1201)
449 cd07666 BAR_SNX7 The Bin/Amphi 27.4 5.5E+02 0.012 24.5 9.9 79 125-206 107-195 (243)
450 PF08702 Fib_alpha: Fibrinogen 27.4 4.2E+02 0.0092 23.2 12.2 45 140-184 23-67 (146)
451 cd07623 BAR_SNX1_2 The Bin/Amp 27.4 3.8E+02 0.0082 24.5 8.2 123 59-200 15-142 (224)
452 cd00089 HR1 Protein kinase C-r 27.2 2.8E+02 0.006 21.0 6.4 58 148-207 4-61 (72)
453 PHA03332 membrane glycoprotein 27.1 2.5E+02 0.0055 32.7 8.1 10 64-73 808-817 (1328)
454 KOG0964 Structural maintenance 27.0 8E+02 0.017 28.7 11.8 95 126-220 669-766 (1200)
455 PRK04654 sec-independent trans 27.0 5.6E+02 0.012 24.4 9.4 33 124-156 23-55 (214)
456 PTZ00446 vacuolar sorting prot 26.7 3.2E+02 0.007 25.2 7.6 28 143-170 31-58 (191)
457 COG0497 RecN ATPase involved i 26.7 3.9E+02 0.0084 28.7 9.1 164 38-216 190-363 (557)
458 PTZ00446 vacuolar sorting prot 26.7 4E+02 0.0086 24.7 8.1 30 137-168 113-142 (191)
459 COG5185 HEC1 Protein involved 26.7 6.5E+02 0.014 27.1 10.5 90 133-223 276-375 (622)
460 PF04977 DivIC: Septum formati 26.6 1.8E+02 0.0039 21.4 5.0 29 150-178 21-49 (80)
461 KOG0018 Structural maintenance 26.5 4.7E+02 0.01 30.5 10.0 34 115-153 668-701 (1141)
462 PF06825 HSBP1: Heat shock fac 26.4 1.6E+02 0.0034 22.3 4.5 35 131-165 13-47 (54)
463 PF11471 Sugarporin_N: Maltopo 26.4 1.5E+02 0.0033 22.5 4.6 57 119-178 1-57 (60)
464 PF04778 LMP: LMP repeated reg 26.4 5E+02 0.011 23.7 8.5 80 135-214 7-95 (157)
465 PRK09590 celB cellobiose phosp 26.3 19 0.00042 29.7 -0.3 72 7-85 3-84 (104)
466 TIGR01988 Ubi-OHases Ubiquinon 26.3 20 0.00043 33.2 -0.3 14 9-22 2-15 (385)
467 PRK09303 adaptive-response sen 26.1 1.5E+02 0.0033 28.4 5.6 21 166-186 156-176 (380)
468 PRK01026 tetrahydromethanopter 26.1 70 0.0015 26.0 2.8 23 188-217 15-37 (77)
469 PF14627 DUF4453: Domain of un 26.1 47 0.001 28.4 1.9 52 63-116 13-78 (107)
470 COG1340 Uncharacterized archae 26.0 6.6E+02 0.014 25.0 12.2 69 137-205 53-124 (294)
471 COG0562 Glf UDP-galactopyranos 25.9 21 0.00046 36.1 -0.2 15 9-23 4-18 (374)
472 PF08700 Vps51: Vps51/Vps67; 25.7 3E+02 0.0065 20.8 7.9 21 136-156 23-43 (87)
473 PRK11020 hypothetical protein; 25.5 2.8E+02 0.006 24.3 6.4 24 191-214 34-57 (118)
474 PF09278 MerR-DNA-bind: MerR, 25.5 1.9E+02 0.0041 20.7 4.8 27 145-171 35-61 (65)
475 COG1392 Phosphate transport re 25.5 5.6E+02 0.012 23.9 10.7 97 133-230 85-198 (217)
476 PF09325 Vps5: Vps5 C terminal 25.5 4.7E+02 0.01 23.1 10.6 86 124-210 78-192 (236)
477 PRK05683 flgK flagellar hook-a 25.4 4.6E+02 0.01 28.5 9.5 59 121-179 127-185 (676)
478 COG5665 NOT5 CCR4-NOT transcri 25.4 1.5E+02 0.0033 30.9 5.6 43 126-174 117-159 (548)
479 PF01537 Herpes_glycop_D: Herp 25.4 27 0.00059 30.0 0.4 21 104-125 71-91 (124)
480 PF04678 DUF607: Protein of un 25.3 1.8E+02 0.0039 26.0 5.5 50 126-176 38-87 (180)
481 cd04786 HTH_MerR-like_sg7 Heli 25.3 2.6E+02 0.0055 23.8 6.3 15 154-168 52-66 (131)
482 PF05278 PEARLI-4: Arabidopsis 25.3 6.6E+02 0.014 24.7 9.9 79 134-212 181-259 (269)
483 PRK08147 flgK flagellar hook-a 25.2 4.9E+02 0.011 27.0 9.4 44 121-164 128-171 (547)
484 PRK06743 flagellar motor prote 25.2 6.1E+02 0.013 24.3 9.4 93 95-189 2-103 (254)
485 PRK10778 dksA RNA polymerase-b 25.2 1.5E+02 0.0033 26.1 5.1 47 110-156 7-56 (151)
486 PF04124 Dor1: Dor1-like famil 25.2 6.3E+02 0.014 24.4 9.9 61 143-206 11-71 (338)
487 PF12795 MscS_porin: Mechanose 25.2 5.4E+02 0.012 23.6 9.6 55 151-205 83-137 (240)
488 smart00397 t_SNARE Helical reg 25.1 2.4E+02 0.0052 19.5 7.4 25 153-177 12-36 (66)
489 PF06013 WXG100: Proteins of 1 24.9 2.6E+02 0.0057 19.9 9.8 74 128-201 7-85 (86)
490 PF05164 ZapA: Cell division p 24.7 1.8E+02 0.0038 22.1 4.7 35 129-163 53-89 (89)
491 COG3334 Uncharacterized conser 24.6 55 0.0012 30.4 2.3 111 164-276 60-183 (192)
492 PRK05431 seryl-tRNA synthetase 24.5 2.5E+02 0.0055 28.4 7.0 59 135-193 38-99 (425)
493 cd00179 SynN Syntaxin N-termin 24.4 3.4E+02 0.0074 22.4 6.8 68 162-229 1-68 (151)
494 PF12329 TMF_DNA_bd: TATA elem 24.3 3.5E+02 0.0075 21.1 6.5 60 149-208 15-74 (74)
495 KOG2196 Nuclear porin [Nuclear 24.3 3.2E+02 0.007 26.6 7.3 83 130-212 125-250 (254)
496 cd00176 SPEC Spectrin repeats, 24.3 4E+02 0.0087 21.8 8.9 95 135-230 33-127 (213)
497 KOG3990 Uncharacterized conser 24.2 2.4E+02 0.0053 27.8 6.5 60 147-207 226-286 (305)
498 KOG3385 V-SNARE [Intracellular 24.2 2.6E+02 0.0057 24.4 6.1 66 158-223 26-92 (118)
499 PF09726 Macoilin: Transmembra 24.2 3.5E+02 0.0077 29.5 8.4 84 127-210 526-609 (697)
500 PF13874 Nup54: Nucleoporin co 24.1 3.3E+02 0.0072 23.3 6.8 65 149-213 33-97 (141)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=1.2e-57 Score=384.79 Aligned_cols=122 Identities=47% Similarity=0.776 Sum_probs=116.4
Q ss_pred CCceehhh--hhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 021850 90 GAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 90 Gg~~~~~i--vviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~e 167 (306)
|+..|.++ +++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+|.|
T Consensus 3 g~~~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~e 82 (126)
T PF07889_consen 3 GGWSSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKE 82 (126)
T ss_pred CCccchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33334443 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 168 is~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
++++|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus 83 i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=97.09 E-value=0.0012 Score=54.41 Aligned_cols=89 Identities=17% Similarity=0.328 Sum_probs=52.9
Q ss_pred eehhhhhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 021850 93 KYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 172 (306)
Q Consensus 93 ~~~~ivviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~i 172 (306)
.++.|.++.+++|++.||+ ++. =||+|..+.. |.+|+++.|.++++...-.+..
T Consensus 8 ~w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 8 NWGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred CcHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhC
Confidence 3556667777788888886 322 3666655443 3344444444444444444444
Q ss_pred --HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 173 --QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 173 --k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
++++..++..++++.+|++.+...+++++..++.+
T Consensus 62 Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 62 PTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776666666655544
No 3
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.40 E-value=0.055 Score=52.99 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=7.8
Q ss_pred hhhheeeeEEe
Q 021850 100 IVAVGYGYVWW 110 (306)
Q Consensus 100 iGavGYgYmwW 110 (306)
+.++|+||.||
T Consensus 40 ~~alg~~~~~~ 50 (372)
T PF04375_consen 40 ALALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHHH
Confidence 36678887767
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.81 E-value=0.83 Score=42.05 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=72.4
Q ss_pred eeeeEEe----cccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 021850 104 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (306)
Q Consensus 104 GYgYmwW----KGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (306)
||+++.- .|| +.+=+-.+..++..-+..+-++|+.+.+.|+.+.....+|-..+..++++....+..+++|-.++
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888874 378 55555566678899999999999999999999999999999999998888766666666666555
Q ss_pred hhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 180 ~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
+..+ ...+.-++.|+.+++.+..
T Consensus 145 ~~~l-------~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 145 KNQL-------IVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 5444 5555555555566555544
No 5
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=94.43 E-value=0.28 Score=41.22 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=44.4
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~ 198 (306)
=|||++-+...=.+--.-|..+-..+... -...+|+.|..+.+.|-|-++..+.++ ..-+.-++.|-....
T Consensus 21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~-------k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQ-------KAQGKTLQLILKTLQ 91 (102)
T ss_dssp TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 38999988865544444444444444422 334444444444444444444444444 455666677777777
Q ss_pred hHHHHHHHHhh
Q 021850 199 TLESKLIEIEG 209 (306)
Q Consensus 199 ~Le~Ki~~ie~ 209 (306)
.+..+|++||+
T Consensus 92 ~inkRLD~~E~ 102 (102)
T PF01519_consen 92 SINKRLDKMES 102 (102)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHhhccC
Confidence 88899998874
No 6
>PRK14011 prefoldin subunit alpha; Provisional
Probab=92.83 E-value=0.58 Score=41.01 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=46.1
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
++..||.||.==| ++..|+.+|..||+.|+..+++..+..+.+.+++.+
T Consensus 72 VlVdIGtGy~VEk-------------------------------~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~ 120 (144)
T PRK14011 72 AILGVGSDIYLEK-------------------------------DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITK 120 (144)
T ss_pred EEEEccCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999997555 568899999999999999999999999999888877
Q ss_pred hhhch
Q 021850 179 LRGRS 183 (306)
Q Consensus 179 v~~dl 183 (306)
++..+
T Consensus 121 l~~~L 125 (144)
T PRK14011 121 LRKEL 125 (144)
T ss_pred HHHHH
Confidence 76554
No 7
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.76 E-value=1.2 Score=44.38 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
.+..+++++...+...++.+...|+.+..++++...-...++.++..++..+.+++.+++.+...+..++.++..++.+-
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l 271 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555566666777888888888888888888999999999999999888888888888888888776665
Q ss_pred hhHhHH
Q 021850 212 DITTLG 217 (306)
Q Consensus 212 d~tn~G 217 (306)
......
T Consensus 272 ~~~~~~ 277 (562)
T PHA02562 272 EQFQKV 277 (562)
T ss_pred HHHHHH
Confidence 544433
No 8
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=92.67 E-value=0.82 Score=37.65 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=47.7
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
++.-+|.||+=.+ ++..|+++|..||+.++..+++..+..+..+++++.
T Consensus 70 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 70 VLVSIGSGYYVEK-------------------------------DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999888 458999999999999999999999999988888877
Q ss_pred hhhchh
Q 021850 179 LRGRSK 184 (306)
Q Consensus 179 v~~dls 184 (306)
+...+.
T Consensus 119 i~~~l~ 124 (126)
T TIGR00293 119 LEQEAQ 124 (126)
T ss_pred HHHHHh
Confidence 766543
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.44 E-value=4.7 Score=37.61 Aligned_cols=91 Identities=24% Similarity=0.283 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhhhh-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 126 LSDACNSVARQLED-VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 126 msnAv~svtKqLeq-Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
|++|...|-.+-+. +...-..+......+|+.+........+-....++|+.+++..+.....++..++.....||..|
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 88999999888774 44556688889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHhH
Q 021850 205 IEIEGKQDITTL 216 (306)
Q Consensus 205 ~~ie~kQd~tn~ 216 (306)
..++..-.....
T Consensus 247 ~~le~~~~~~~~ 258 (312)
T PF00038_consen 247 RELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988765544433
No 10
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.16 E-value=0.2 Score=49.37 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHH---HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tK---khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
+|+.++.++...|..++..|++-+ .+|+..|..+...+.+.....-.++..|..+..|+++.+.||-..--.|..||
T Consensus 67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 445555555555555555544433 34556666666666666666677777777777777777777777777777777
Q ss_pred HHHHHHhhh
Q 021850 202 SKLIEIEGK 210 (306)
Q Consensus 202 ~Ki~~ie~k 210 (306)
.||..+|..
T Consensus 147 ~RV~~LEs~ 155 (326)
T PF04582_consen 147 SRVKALESG 155 (326)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 777766643
No 11
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=92.04 E-value=1.8 Score=35.02 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHH
Q 021850 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (306)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (306)
|..+|.++-++|.+.|++|+..++.-.+..... .++...+..++.|-..+-+-+.+.+.+...+|..|.-....+.
T Consensus 2 ~~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 2 VTYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888877776654443 4555566667777777777777777888888887777766666
Q ss_pred HHHHHHH
Q 021850 220 KLCDRAR 226 (306)
Q Consensus 220 ~LC~f~~ 226 (306)
+..+-+.
T Consensus 78 ~a~e~Ir 84 (89)
T PF13747_consen 78 SAIETIR 84 (89)
T ss_pred HHHHHHH
Confidence 6655443
No 12
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=91.32 E-value=3.1 Score=32.60 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=56.2
Q ss_pred hhhhHHHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHHH--HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 136 QLEDVYSSI---SAAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 136 qLeqVs~sL---~~tKkhLsqRId~vD~kLDeq~eis~~i--k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
.|+.+.+.| .....+|..+|+.+..+|+++.++.... -+.+. -...+.+|..+|.+++..+..|..|+..++
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555444 4556789999999999999998866544 33444 778889999999999999999999988764
No 13
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=91.27 E-value=1.3 Score=36.66 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=45.7
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
++.-+|.||+=.+ ++..|++.+..||+.+...+++..+....++++++.
T Consensus 71 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 71 VLVDLGTGYYVEK-------------------------------DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899998776 567788999999999999998888888888888877
Q ss_pred hhhchhh
Q 021850 179 LRGRSKL 185 (306)
Q Consensus 179 v~~dls~ 185 (306)
+...+.+
T Consensus 120 ~~~~l~~ 126 (129)
T cd00584 120 LEAELQE 126 (129)
T ss_pred HHHHHHH
Confidence 7766543
No 14
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=91.19 E-value=1.6 Score=36.73 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=40.0
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
|+.-+|+||+=.+ .+..|++.|..||+.++..+++..+....+++++..
T Consensus 78 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 78 VIVSLGAGYSAEK-------------------------------DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999888 457788888888888888887776666666666655
Q ss_pred hhhch
Q 021850 179 LRGRS 183 (306)
Q Consensus 179 v~~dl 183 (306)
+...+
T Consensus 127 ~~~~l 131 (140)
T PRK03947 127 LAQEL 131 (140)
T ss_pred HHHHH
Confidence 54444
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.18 E-value=5.2 Score=36.92 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=62.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t 214 (306)
.++.++......+..+..+||+..++.-++..+-.++.++|+..++.-..+...-+++.+..+..|+.+++.++..+..-
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666777889999999999888888888888888888888888888888888888888888888777654433
No 16
>PRK11637 AmiB activator; Provisional
Probab=91.18 E-value=2.3 Score=42.04 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhhhhhHHHHHH---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 125 SLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~---~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
...+=...+-+++++....+. ..++++.+.|+.++.++++..+-...++.++.++..+++....++...+.-+..+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554 34445556777777777777776667777777777777777766666666666655
Q ss_pred HHHH
Q 021850 202 SKLI 205 (306)
Q Consensus 202 ~Ki~ 205 (306)
..+.
T Consensus 124 ~~l~ 127 (428)
T PRK11637 124 RLLA 127 (428)
T ss_pred HHHH
Confidence 5443
No 17
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=91.17 E-value=0.72 Score=37.24 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=43.9
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
++.-+|.||+=++ ++..|.+.+..||+.+.+++++..+-.+.+++++..
T Consensus 61 vlV~lG~~~~vE~-------------------------------s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 109 (120)
T PF02996_consen 61 VLVSLGAGYYVEM-------------------------------SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQ 109 (120)
T ss_dssp EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999888 457888889999999988888887777777777766
Q ss_pred hhhchhh
Q 021850 179 LRGRSKL 185 (306)
Q Consensus 179 v~~dls~ 185 (306)
+...+++
T Consensus 110 ~~~~l~~ 116 (120)
T PF02996_consen 110 LEQTLQQ 116 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=90.69 E-value=4.5 Score=35.01 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 021850 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (306)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~ 177 (306)
+++-+=.|||.|+.=...|..+||+.-+-...+|++++
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777777777777777776666666666543
No 19
>PRK11637 AmiB activator; Provisional
Probab=90.63 E-value=2.1 Score=42.29 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=36.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 132 SVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLs---qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
.+-++|+++-..|...++.+. .++..+..++++...=...+.+++.+++.+++.+..+++.++.-+..++.+|+..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444 44444444444444444444444444444444444444444444444444444333
No 20
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=89.54 E-value=0.95 Score=45.44 Aligned_cols=67 Identities=12% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCceehhh--hhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850 90 GAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 90 Gg~~~~~i--vviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe 164 (306)
+|...+++ +++-++|+||-|| |. --.......-+.+..+|+.......+.+..|.+.+..++.++.+
T Consensus 35 ~g~~l~~~aili~la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~ 103 (390)
T PRK10920 35 TGLVLSAVAIAIALAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQ 103 (390)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444543 2345777777666 21 22222345555566666666555555555555555554444444
No 21
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=89.46 E-value=5.4 Score=31.27 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=17.9
Q ss_pred hhHhHHHHHHHHHHHhhhc-CCCcccccc
Q 021850 212 DITTLGVKKLCDRARELEN-GRPTELVQS 239 (306)
Q Consensus 212 d~tn~GV~~LC~f~~~le~-~~~~~~~Q~ 239 (306)
......+..+|.|++..=+ +...++.|.
T Consensus 85 ~~~l~~l~~~~~~~e~~l~~~~~~e~L~~ 113 (127)
T smart00502 85 TQKQEKLSHAINFTEEALNSGDPTELLLS 113 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 3456677888888875443 455566654
No 22
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=89.32 E-value=12 Score=31.99 Aligned_cols=17 Identities=6% Similarity=0.368 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021850 59 NDLLAEVSSVQQELSHV 75 (306)
Q Consensus 59 ~~L~aQV~~LaqElr~L 75 (306)
+++...++.++.+.+.|
T Consensus 43 ~~~~~~i~~ia~qt~lL 59 (213)
T PF00015_consen 43 SEILSLINEIAEQTNLL 59 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHh
Confidence 34777888888888887
No 23
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=89.20 E-value=7.7 Score=33.59 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik 173 (306)
|.+-+-|.....||.+-.+.++....+|.+||-.+|..+....+....-+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq 76 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ 76 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999998776655444333
No 24
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=88.51 E-value=15 Score=31.46 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=28.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
..++.+-.+....+...-+++...++.+-..+++..+......+.+......+..|...++.+...+..+...+.
T Consensus 85 r~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~ 159 (213)
T PF00015_consen 85 RKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAE 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHH
Confidence 333333333333333333344444333333333333333333333333333333344444444444433333333
No 25
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.16 E-value=4.2 Score=41.57 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=62.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t 214 (306)
++|+|....|++.. ++|....++..+...-.+..++++..+..-+.++..|++.++..+..++.++..++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 77777777776544 44555566666666667777788888888888889999999999999999998887655 77
Q ss_pred hHHHHHHH
Q 021850 215 TLGVKKLC 222 (306)
Q Consensus 215 n~GV~~LC 222 (306)
..++....
T Consensus 113 qr~~La~~ 120 (420)
T COG4942 113 QRRRLAEQ 120 (420)
T ss_pred HHHHHHHH
Confidence 77766554
No 26
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=88.16 E-value=4.5 Score=31.67 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=15.5
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 176 V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
++++.+|+...-+.++.+-+.|..++..+..+
T Consensus 56 ~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 56 TNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333344444444455555555555555543
No 27
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.05 E-value=2.2 Score=35.27 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=52.1
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh--hhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i--g~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
..+++.+++++++ ..+-++.+...+.++ .+|+..++..+..+++++..+++.=+.-++-+.+|.+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666654 467788888888888 9999999999999999999999988877887777765
No 28
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.89 E-value=8.6 Score=33.41 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=48.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
.|+.||+-|...||+...--+.+.+.+.++....+++..-+..+..--..+|.|++.++.+-
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 36778888888888888888888888887777788888888888888888888888777653
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.53 E-value=7.5 Score=43.86 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=76.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t 214 (306)
+..++.-..+...=+...+++...+.++-+..+-.+.+++|++.-...+..+..|++..+..+..++.++.+++..-+..
T Consensus 291 ~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 291 KKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555556666777777777777777888888888888999999999999999999999999999888888
Q ss_pred hHHHHHHHHHHHhhhcCC
Q 021850 215 TLGVKKLCDRARELENGR 232 (306)
Q Consensus 215 n~GV~~LC~f~~~le~~~ 232 (306)
-.-+.+||.-+..++..-
T Consensus 371 k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999998887665543
No 30
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=87.02 E-value=4.2 Score=32.92 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (306)
++..|.+.|..||+.++..+++..+....+++++..++..+.+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888877777777777766665543
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.76 E-value=12 Score=38.73 Aligned_cols=120 Identities=13% Similarity=0.273 Sum_probs=75.2
Q ss_pred eeeeEEecccCCCchhhhhh--------------------hhHHHHHHHHhhhhhhHHHHHH---HHHHHHHHhhhhhhh
Q 021850 104 GYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDR 160 (306)
Q Consensus 104 GYgYmwWKGws~SDlMyVTK--------------------RnmsnAv~svtKqLeqVs~sL~---~tKkhLsqRId~vD~ 160 (306)
||-=|-=+|..|+++=.-++ ......+..+.++++++|+.|. .||+...+.+..+.+
T Consensus 238 gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~ 317 (569)
T PRK04778 238 GYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD 317 (569)
T ss_pred HHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44445666777876532222 2344566778888888888887 577777777777777
Q ss_pred hHHHHHHHHHHHHHHHHHhhhc----------hhhhhhHHHHHH---------------------HHHHhHHHHHHHHhh
Q 021850 161 DVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVR---------------------DIVQTLESKLIEIEG 209 (306)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~d----------ls~ig~Di~~v~---------------------~~V~~Le~Ki~~ie~ 209 (306)
.++...+-...++.|+..++.. +..+..++..+. .....+..++..++.
T Consensus 318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~ 397 (569)
T PRK04778 318 FLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK 397 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666655 333444443333 344455566667777
Q ss_pred hhhhHhHHHHHHHH
Q 021850 210 KQDITTLGVKKLCD 223 (306)
Q Consensus 210 kQd~tn~GV~~LC~ 223 (306)
.|.--..-|..|+.
T Consensus 398 eq~ei~e~l~~Lrk 411 (569)
T PRK04778 398 EQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666666666654
No 32
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=86.40 E-value=5.5 Score=41.85 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=65.1
Q ss_pred CCchhhh----hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 021850 115 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (306)
Q Consensus 115 ~SDlMyV----TKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di 190 (306)
+++..|. |||||...+ -+.+=..+..+-+.=..+..+|+++...+++..++...+.+.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~i---E~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDI---EKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666 888887654 455666666777777788889999999999999999999999988888887777777
Q ss_pred HHHHHHHHhHHHH
Q 021850 191 QSVRDIVQTLESK 203 (306)
Q Consensus 191 ~~v~~~V~~Le~K 203 (306)
..++.--..++.|
T Consensus 83 ~~L~~~~~~~~~k 95 (618)
T PF06419_consen 83 SELREQKEELELK 95 (618)
T ss_pred HHHHHHHHHHHHH
Confidence 7766444444433
No 33
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=86.34 E-value=23 Score=31.32 Aligned_cols=96 Identities=22% Similarity=0.334 Sum_probs=46.7
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHH----HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh-hhhHHHHHH
Q 021850 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL-IGDEFQSVR 194 (306)
Q Consensus 120 yVTKRnmsnAv~svtKqLeqVs~sL~~tKkh----LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~-ig~Di~~v~ 194 (306)
+|||..+.+..-..-..+.++-..+....++ +....+.|...+|.. -+.+++|+..++.++.- |..+=..++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6888888877777666666666666555444 223333333333322 23445555555544320 111111344
Q ss_pred HHHHhHHHHHHHHhhhhhhHhHHH
Q 021850 195 DIVQTLESKLIEIEGKQDITTLGV 218 (306)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~tn~GV 218 (306)
.....+|.||..++.+-+....++
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~l 143 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 34
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=85.99 E-value=3.3 Score=43.76 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (306)
...+.+.+++|++.++.++.+...-+.+++..+.++
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566555555555444444444444333
No 35
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=85.78 E-value=6.3 Score=34.23 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 186 IGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 186 ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
...||+.++..|..|+.+|..+..++
T Consensus 107 s~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 107 SRKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 36899999999999999998887653
No 36
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.71 E-value=6.5 Score=38.01 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+......+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888899999999999988888888888888888888888888887766665555544
No 37
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=85.69 E-value=8.1 Score=41.72 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHHhhhhhhHHHH-HHHHHHHHHHhhhhhhhhH
Q 021850 130 CNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 130 v~svtKqLeqVs~s-L~~tKkhLsqRId~vD~kL 162 (306)
++++.+|++++-.. ...++.|+...|++++..+
T Consensus 189 l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 189 LNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 45666777777777 7778888888888777654
No 38
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=85.19 E-value=13 Score=32.83 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=58.7
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq-~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
.++..+..+-.||..+.+.|...-..+..|++.+-..+++. ..+++.++.|++.+..++..+-..|-.+......|-..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677777888888888888888887777777777766543 45667777888777777777776666666666666555
Q ss_pred HHHH
Q 021850 204 LIEI 207 (306)
Q Consensus 204 i~~i 207 (306)
+.-+
T Consensus 115 ln~l 118 (140)
T PF04513_consen 115 LNNL 118 (140)
T ss_pred HHHh
Confidence 5533
No 39
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.06 E-value=9.7 Score=37.91 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=49.4
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
|=|=-=+.+++++...+..+|+.+++.+..+-..+..|=..+...++...+-=+..++++.+++....+....|....
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 445566677777888888888888888887777777776666666655555555555555555554444444444333
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.21 E-value=13 Score=37.27 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 174 ~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
+++..+......+..++..+...+..++.++.
T Consensus 351 ~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 351 QSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 33433334444444444444444444444443
No 41
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=83.99 E-value=14 Score=35.86 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=71.4
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh--------------
Q 021850 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG-------------- 187 (306)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig-------------- 187 (306)
.-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+.
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d 164 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence 334444456899999999999999999999999999998777666666555544333332222222
Q ss_pred ----hHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850 188 ----DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 188 ----~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (306)
..+..+.+.+..||.|+..++-.+..+..+.--
T Consensus 165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pq 201 (333)
T PF05816_consen 165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQ 201 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 245667888899999999988888887777543
No 42
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=83.71 E-value=18 Score=30.00 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 021850 126 LSDACNSVARQLEDVYSSI 144 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL 144 (306)
|.+.+..+..+++.+.+.|
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 43
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=83.70 E-value=22 Score=28.89 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh---HHHHHHHHHHhHHHHHHHHhhh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD---EFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~---Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
|...=+..+.|...+++.......-.+.......+++.-+.+|.. .|..+-.+|..|+.-..++|.|
T Consensus 26 Le~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 26 LENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555444444444444333 5555555555555555555543
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.47 E-value=38 Score=34.84 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=67.9
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLS-------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL~~tKkhLs-------qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
-++-+-++.....++|..|...|++-|++|. .+.++++..+.|++..-+++..+...-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677778888888899999999999888887 567777778888888888888887777777777777777777
Q ss_pred HHHHhHHHHHHHHhhh
Q 021850 195 DIVQTLESKLIEIEGK 210 (306)
Q Consensus 195 ~~V~~Le~Ki~~ie~k 210 (306)
..+..+|..+.+..++
T Consensus 238 ~~Ias~e~~aA~~re~ 253 (420)
T COG4942 238 NEIASAEAAAAKAREA 253 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777666544443
No 45
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.28 E-value=20 Score=31.27 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 021850 220 KLCDRAR 226 (306)
Q Consensus 220 ~LC~f~~ 226 (306)
+|++.++
T Consensus 176 ~l~~~~~ 182 (191)
T PF04156_consen 176 QLEEKIQ 182 (191)
T ss_pred HHHHHHH
Confidence 3444443
No 46
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.88 E-value=20 Score=33.10 Aligned_cols=72 Identities=10% Similarity=0.193 Sum_probs=51.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
....++..+--+.+...|..|.++|+.+...++....-.+..+..|...+..+..+..+++++..+=..|..
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666777788888888888888887777777777777777777777777777777655554444
No 47
>PRK09039 hypothetical protein; Validated
Probab=80.50 E-value=46 Score=32.68 Aligned_cols=87 Identities=10% Similarity=0.259 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH-------HHHHHHhh
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE-------SKLIEIEG 209 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le-------~Ki~~ie~ 209 (306)
|+..++........+..|+..+.++|++.+..+....-+|..++..++.++.-+..++..+...| .+|+.++.
T Consensus 100 Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444557788888888888888888777666666655555555555555555544444 44455544
Q ss_pred hhhhHhHH-HHHHHH
Q 021850 210 KQDITTLG-VKKLCD 223 (306)
Q Consensus 210 kQd~tn~G-V~~LC~ 223 (306)
.=+.+... +.-|-+
T Consensus 180 ~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 180 RLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 43444323 444433
No 48
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=80.46 E-value=16 Score=29.20 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHH----HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQA----TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~----ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
+-++.+++.+|++.=-..|.++.+.++. ++.+...=...+.++..|++.++..++.|..|+..
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777766666666665543 34555555566777889999999999999998873
No 49
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=80.23 E-value=13 Score=26.69 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=31.2
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
+.|+.+..++.+.+++...|.++|.+=..-+.+|..+++.....+..=-.+|.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 56 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLK 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677777777776666555555555555555544444444443
No 50
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.16 E-value=32 Score=35.70 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHhc
Q 021850 58 FNDLLAEVSSVQQELSH 74 (306)
Q Consensus 58 ~~~L~aQV~~LaqElr~ 74 (306)
|.++..+|..|+++|.+
T Consensus 251 ~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 251 HLDIEKEIQDLKEQIDE 267 (569)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 44478888888888887
No 51
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=79.91 E-value=6.8 Score=31.41 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHH
Q 021850 186 IGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 186 ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
+..-++.+-..+..|+.++..|
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 52
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.88 E-value=26 Score=32.23 Aligned_cols=67 Identities=12% Similarity=0.252 Sum_probs=47.6
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHH
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (306)
..||+.|..++.+...+.........++...+..+-.|+......+..+|.|+..++..-.....-+
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 4466666666667777777777777788888888888888888888888888877776544444433
No 53
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=79.85 E-value=7.7 Score=35.88 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
+..++-+|..|+|...|.-..+-+.+.+-++--...+.|+..+.+-+..||.|++
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D 131 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLD 131 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443344433333334445555555555555666655
No 54
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=79.75 E-value=49 Score=33.36 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
++.+...=.++..-.+.+....++|.+..+++...+.++...+.++....+.+.
T Consensus 272 s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~ 325 (553)
T PRK15048 272 SDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQAS 325 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555444444444444433333
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.48 E-value=21 Score=32.95 Aligned_cols=69 Identities=10% Similarity=0.243 Sum_probs=39.1
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
.+.+-++.+..+|++........+.++.++++..+....+..+=-++.++++..++..+....-+.+.+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666666666666666666666666666655555555555666666555554433333333
No 56
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=79.26 E-value=19 Score=28.16 Aligned_cols=25 Identities=8% Similarity=0.298 Sum_probs=11.0
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHH
Q 021850 120 FATRRSLSDACNSVARQLEDVYSSI 144 (306)
Q Consensus 120 yVTKRnmsnAv~svtKqLeqVs~sL 144 (306)
+.+-+++......+.+.++++.+.+
T Consensus 18 ~~~l~~l~~~l~~~~~ti~~l~~~~ 42 (90)
T PF06103_consen 18 IKVLKKLKKTLDEVNKTIDTLQEQV 42 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444445444444444444444333
No 57
>PRK04406 hypothetical protein; Provisional
Probab=79.17 E-value=8.6 Score=30.34 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021850 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 146 ~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (306)
+|...+.+||+.|..++--|...+....+.|++-+..+.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~ 42 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLIT 42 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999988887777777777766655553
No 58
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=79.16 E-value=16 Score=37.44 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH------------hhhchhhhhhHHHHHHHHHH--------hH
Q 021850 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI------------LRGRSKLIGDEFQSVRDIVQ--------TL 200 (306)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~------------v~~dls~ig~Di~~v~~~V~--------~L 200 (306)
..-+..-|++|..+-++|-.++|+...+.+.++.+|.. +..+++....++..+..-+. .+
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34566778888888888888888888888888877643 33344444444444444433 34
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHHHHhhhc
Q 021850 201 ESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (306)
Q Consensus 201 e~Ki~~ie~kQd~tn~GV~~LC~f~~~le~ 230 (306)
|.-|..|..-|+|=+.=-..+-+.-+.++.
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL~eDl~k 310 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDLKEDLKK 310 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888877775555454444443
No 59
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=79.09 E-value=15 Score=30.98 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhchhh-hhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 166 VEISQATQEEVTILRGRSKL-IGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 166 ~eis~~ik~eV~~v~~dls~-ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.++-+.+.+.|..+-..+.- ...||+.++.-|..|+.+|..++.
T Consensus 73 ~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 73 DKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777666555532 458999999999999999988764
No 60
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=79.03 E-value=11 Score=37.54 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=9.8
Q ss_pred chhhhhhHHHHHHHHHHhHHHHHH
Q 021850 182 RSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 182 dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
.|.+|=.||+.+..+=..|-..|.
T Consensus 86 ~V~~it~dIk~LD~AKrNLT~SIT 109 (383)
T PF04100_consen 86 MVQEITRDIKQLDNAKRNLTQSIT 109 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 61
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=78.90 E-value=9.2 Score=34.52 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 146 ~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
.-..-|..+.+.|+.++++..+.-+...|+|-- =.+=+=+.+|+.+...+..||.+|..+|
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs--Yqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVS--YQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666777777777777777888743 3446678999999999999999999755
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.79 E-value=51 Score=29.93 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021850 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~ 191 (306)
.....++..|++.+..+++++.+-.+..++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777777777777666655
No 63
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.76 E-value=25 Score=36.70 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=18.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~e 167 (306)
++|++-++-+.++|+-+.+|+..++.|++++..
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~k 396 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQK 396 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666555543
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.51 E-value=8.6 Score=34.34 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCCchhhhhhhhHHH---HHHHHhhhhhhHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021850 114 KLPDMMFATRRSLSD---ACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (306)
Q Consensus 114 s~SDlMyVTKRnmsn---Av~svtKqLeqVs~sL~~tKkhLsq---RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (306)
++.+..+..+.-|+. .+..+..+|-...+.+..-++.+.. +|..+...+....+-.....+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766664 4677788888888888777766655 4555555555555555666678888888899999
Q ss_pred hHHHHHHHHHHhHHHHHHHHhh
Q 021850 188 DEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 65
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=78.22 E-value=45 Score=28.96 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~ 198 (306)
++++-++.++....++-+.++..=.+....++.....+++..+.+..+.+.+.++...+..+..-+..+...+.
T Consensus 137 ~la~~t~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~ 210 (262)
T smart00283 137 KLAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATD 210 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444444444444444444444444444333333333333333
No 66
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=77.17 E-value=41 Score=34.71 Aligned_cols=93 Identities=17% Similarity=0.329 Sum_probs=66.5
Q ss_pred hhHHHHHHHHhhhhhhHHHH------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-----hhhchhhh
Q 021850 124 RSLSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI-----LRGRSKLI 186 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~s------------L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~-----v~~dls~i 186 (306)
+.+..-++++-.++..|.++ +.+.|++|+..-|+|=.|.|+.+.+.+.++++|.. ....++.+
T Consensus 176 ~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v 255 (426)
T smart00806 176 TEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETV 255 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34455556666666666554 45779999999999999999999999999999743 22345556
Q ss_pred hhHHHHHHHHHHh---------------HHHHHHHHhhhhhhHhH
Q 021850 187 GDEFQSVRDIVQT---------------LESKLIEIEGKQDITTL 216 (306)
Q Consensus 187 g~Di~~v~~~V~~---------------Le~Ki~~ie~kQd~tn~ 216 (306)
..||+....-+.. +|.-|+.|..-|+|-|.
T Consensus 256 ~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~l 300 (426)
T smart00806 256 QKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTL 300 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555554 55777788888887665
No 67
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=77.10 E-value=49 Score=28.75 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
.+++..+.+..+.+.+.++.....+....+......+..+..++..+.
T Consensus 40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 87 (262)
T smart00283 40 NADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEELE 87 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 68
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=76.67 E-value=45 Score=34.72 Aligned_cols=121 Identities=14% Similarity=0.303 Sum_probs=76.1
Q ss_pred heeeeEEecccCCCchhhhhh-hhH-------------------HHHHHHHhhhhhhHHHHHH---HHHHHHHHhhhhhh
Q 021850 103 VGYGYVWWKGWKLPDMMFATR-RSL-------------------SDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 159 (306)
Q Consensus 103 vGYgYmwWKGws~SDlMyVTK-Rnm-------------------snAv~svtKqLeqVs~sL~---~tKkhLsqRId~vD 159 (306)
-||-.|-=+|..|+++=+-.+ ..+ ......+...++++|+.+. .||+...+..+.+.
T Consensus 233 ~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~ 312 (560)
T PF06160_consen 233 EGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELY 312 (560)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 388888888988888533321 111 2234445566667777765 57788888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhh----------hhhHHHH---------------------HHHHHHhHHHHHHHHh
Q 021850 160 RDVNKIVEISQATQEEVTILRGRSKL----------IGDEFQS---------------------VRDIVQTLESKLIEIE 208 (306)
Q Consensus 160 ~kLDeq~eis~~ik~eV~~v~~dls~----------ig~Di~~---------------------v~~~V~~Le~Ki~~ie 208 (306)
+.+++..+-.+.+..|+..++..-.- +...+.. +...+..+...+..|+
T Consensus 313 ~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 313 EYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777666555432211 1122222 2333444556777888
Q ss_pred hhhhhHhHHHHHHHH
Q 021850 209 GKQDITTLGVKKLCD 223 (306)
Q Consensus 209 ~kQd~tn~GV~~LC~ 223 (306)
..|.--+..+..|+.
T Consensus 393 ~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 393 EEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888874
No 69
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=75.98 E-value=11 Score=30.25 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh---hhHHHHHHHHHHhHHHHHHHH
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---GDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i---g~Di~~v~~~V~~Le~Ki~~i 207 (306)
+..++++|..-|+.+.+.|++..+....+ ..+=+.+ ..++..=+..|..++.+|..|
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~iv-------e~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIV-------EKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555555555555443333222 2222222 234444455555555555544
No 70
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=75.57 E-value=9.6 Score=30.05 Aligned_cols=78 Identities=15% Similarity=0.320 Sum_probs=40.1
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~ 198 (306)
|+-+++-+.+...-++..+......-....+.+..++++.=.+||=. +++|....+.- +...+..+.
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~~-------L~~~r~kl~ 67 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKAV-------LARTREKLE 67 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHHH-------HHHHHHHHH
Confidence 33444555555555555555555555555666666666555555433 23333222222 344555556
Q ss_pred hHHHHHHHHhh
Q 021850 199 TLESKLIEIEG 209 (306)
Q Consensus 199 ~Le~Ki~~ie~ 209 (306)
.||.||..+|.
T Consensus 68 ~LEarl~~LE~ 78 (79)
T PF04380_consen 68 ALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHhc
Confidence 66666666654
No 71
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=75.37 E-value=34 Score=31.20 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHHHHhhhhhhHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHhh-hchhhhhhHHHHHHHHHHhHHHHH
Q 021850 128 DACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEE-VTILR-GRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL-~~tKkhLsqRId~vD~kLDeq~eis~~ik~e-V~~v~-~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
.+|++-+|++++.+.-. .-.+.-++.-++.+...+.+...-...+-.+ |..++ .+...+.+-+.....-++.|..+|
T Consensus 22 s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 22 SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899998877544 3334456666666666665555444444444 44442 233334455555555555555555
Q ss_pred HHHh
Q 021850 205 IEIE 208 (306)
Q Consensus 205 ~~ie 208 (306)
..+-
T Consensus 102 ~el~ 105 (165)
T PF09602_consen 102 QELL 105 (165)
T ss_pred HHHH
Confidence 5443
No 72
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=75.19 E-value=29 Score=34.79 Aligned_cols=99 Identities=16% Similarity=0.334 Sum_probs=70.2
Q ss_pred cccCC-CchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021850 111 KGWKL-PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (306)
Q Consensus 111 KGws~-SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (306)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+-.++.+|=-.+...|.-...--+...++..+++..-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45544 36788899999999999999999999999999998888887777776655544455556666666665555555
Q ss_pred HH----HHHHHHHhHHHHHHHHhh
Q 021850 190 FQ----SVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 190 i~----~v~~~V~~Le~Ki~~ie~ 209 (306)
+. .+.+++..+|.+=.+||.
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 344555555555455554
No 73
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.00 E-value=6.2 Score=39.18 Aligned_cols=99 Identities=21% Similarity=0.360 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhL---sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
|...+.++...|+.+..+|...+-+| +.+|..+..++++. ..+|+.+..+++.....|..++..|.+++.
T Consensus 54 lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~l-------sssVs~lS~~ls~h~ssIS~Lqs~v~~lsT 126 (326)
T PF04582_consen 54 LSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSL-------SSSVSSLSSTLSDHSSSISDLQSSVSALST 126 (326)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHhhhhhhhhhhhhHHHHHHhhhhhhh
Confidence 44555566666666666666655544 33555555555444 344555555555555555555555555555
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhhhcC
Q 021850 203 KLIEIEGKQDITTLGVKKLCDRARELENG 231 (306)
Q Consensus 203 Ki~~ie~kQd~tn~GV~~LC~f~~~le~~ 231 (306)
.|.-+...-.-----|--|-+-+..+|.+
T Consensus 127 dvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 127 DVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 55544332221112234454555555554
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.87 E-value=42 Score=32.43 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=25.5
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHH---HHHHHHhhhhhhhh
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRD 161 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~t---KkhLsqRId~vD~k 161 (306)
+-|--....|.+-.+.+.++++.+.+.+... +..|..+|.++...
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666777666666554433 44455555555444
No 75
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=74.54 E-value=5.3 Score=33.00 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=9.0
Q ss_pred hhhhheeeeEEeccc
Q 021850 99 VIVAVGYGYVWWKGW 113 (306)
Q Consensus 99 viGavGYgYmwWKGw 113 (306)
++.+.-+||+||-.+
T Consensus 11 ~lvl~L~~~l~~qs~ 25 (110)
T PF10828_consen 11 VLVLGLGGWLWYQSQ 25 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455677887644
No 76
>PRK09039 hypothetical protein; Validated
Probab=74.21 E-value=30 Score=33.99 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=21.3
Q ss_pred CCCCCCchhh---hhhhccccccccccccchhhcccc
Q 021850 256 XXXXXIPMDL---IRLTGRIVSRPLASRSSMELQNWG 289 (306)
Q Consensus 256 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 289 (306)
...+++|.++ |++.|.-=++|+....+ .-.||-
T Consensus 252 ~~~~~~p~~i~~~I~I~GHTD~~p~~~~g~-~~~N~~ 287 (343)
T PRK09039 252 ELAKEIPPEINWVLRVDGHTDNVPLSGTGR-FRDNWE 287 (343)
T ss_pred HhhhccCCcCCeeEEEEEecCCCCccCCCC-cccHHH
Confidence 3445667664 78999988888865322 345674
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.16 E-value=59 Score=28.27 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=51.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
+++..=-|+|++=...+..-=+.|+.|++.+...+|+..+-....++.+.+.... ....++++..|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~----~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR----KSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhHHHHHhhHHHHHHHHHHH
Confidence 4455556667776766666667777777777777776655555444444333221 223346666666666666666
Q ss_pred hhhhhhHhHHHHH
Q 021850 208 EGKQDITTLGVKK 220 (306)
Q Consensus 208 e~kQd~tn~GV~~ 220 (306)
+.+=.-|+.-+..
T Consensus 93 e~~L~e~~ekl~e 105 (143)
T PF12718_consen 93 EKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555554443
No 78
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=73.90 E-value=52 Score=37.12 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=22.5
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
+.+..+.+..+..+..++.........++..+..++.+-+-....+-.+
T Consensus 862 ~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455555555555555554444444444444333
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.89 E-value=16 Score=34.85 Aligned_cols=56 Identities=9% Similarity=0.240 Sum_probs=31.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
+|+.+|.+++-...-.+.+++++..++..++.+..++..++..+..|+..+..++.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ 66 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES 66 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555444433
No 80
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.80 E-value=27 Score=34.27 Aligned_cols=10 Identities=20% Similarity=-0.031 Sum_probs=4.8
Q ss_pred cccCCCCCCC
Q 021850 237 VQSGSLHPLP 246 (306)
Q Consensus 237 ~Q~~s~~p~~ 246 (306)
.|.....|++
T Consensus 213 ~q~l~~~p~~ 222 (301)
T PF06120_consen 213 RQGLANSPPR 222 (301)
T ss_pred hcccccCCCC
Confidence 4554445444
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=73.13 E-value=32 Score=36.47 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=34.8
Q ss_pred Cchhhhhhhh--HHHHHHHHhhh---hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 021850 116 PDMMFATRRS--LSDACNSVARQ---LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (306)
Q Consensus 116 SDlMyVTKRn--msnAv~svtKq---LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (306)
+||+.||-|. |.+-+..+-|. |.+....|......|..+++.+...|....+-....+.+..++
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5898888665 33333333333 3344445555555666677777666655554444444333333
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=72.85 E-value=38 Score=38.40 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=66.7
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
....-++|.++...+..+...+.+++..+..++++..+-.+...++..+.+..+ ..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~---~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDEL---NKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888888888888888888777777776666655443 56666677777777788887776
Q ss_pred -hhhhHhHHHHHHHHHHH
Q 021850 210 -KQDITTLGVKKLCDRAR 226 (306)
Q Consensus 210 -kQd~tn~GV~~LC~f~~ 226 (306)
+..|.+.+|..+++-+.
T Consensus 335 ~~~~ye~~~i~~~~~~~~ 352 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARVD 352 (1201)
T ss_pred HHHHHHHCCHHHHHHHHH
Confidence 45566777777765544
No 83
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.81 E-value=17 Score=35.90 Aligned_cols=64 Identities=17% Similarity=0.474 Sum_probs=31.6
Q ss_pred hhhhhee-eeEEecccCCCchhhhhhh--------hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHH
Q 021850 99 VIVAVGY-GYVWWKGWKLPDMMFATRR--------SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (306)
Q Consensus 99 viGavGY-gYmwWKGws~SDlMyVTKR--------nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLD 163 (306)
+.+++-| +|-.||-|=++ +||.-.. .|.+=...+.|-+..+-+.++.+++.++..-+.++..|+
T Consensus 92 i~aGi~y~~y~~~K~YV~P-~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~ 164 (300)
T KOG2629|consen 92 ILAGIAYAAYRFVKSYVLP-RFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALA 164 (300)
T ss_pred HHhhHHHHHHHHHHHHHHH-HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556 47789988444 4554433 344444444444444444444444444444333333333
No 84
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.54 E-value=19 Score=30.85 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=50.5
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (306)
.+|..+++-+-.+++..|.+.+... ...+|...++.+..+.+..-++-+.--++|.+++.|+.
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~~-~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALKK-EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4788888888888888888855444 44588999999999999999999988889977777764
No 85
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.50 E-value=73 Score=35.96 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 162 LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
+++..+-....++++..+...+.........+..-+..++.++..++..-.....-+..|
T Consensus 858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444555555555555555555555555555555554444444444443333
No 86
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=72.36 E-value=13 Score=28.32 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISA 146 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~ 146 (306)
=||+.+.+.+..+..++++.++....
T Consensus 26 e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 26 ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777776666666555444
No 87
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=71.92 E-value=61 Score=28.79 Aligned_cols=79 Identities=13% Similarity=0.316 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH--------HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI--------VEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq--------~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V 197 (306)
+++..+++-.|.-++...|+..+.-+..|+..++.++... .+.....-+-+..++ +.++.++..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4555566655555555555555555555555555544431 123334444454444 34456777777777
Q ss_pred HhHHHHHHHH
Q 021850 198 QTLESKLIEI 207 (306)
Q Consensus 198 ~~Le~Ki~~i 207 (306)
..|-..|.-|
T Consensus 95 ~nL~ssvTNi 104 (140)
T PF04513_consen 95 NNLTSSVTNI 104 (140)
T ss_pred HHHHHHHhhH
Confidence 7776666644
No 88
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=71.60 E-value=43 Score=29.97 Aligned_cols=87 Identities=10% Similarity=0.209 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhh----chhhhhhHHHHHHHH
Q 021850 122 TRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG----RSKLIGDEFQSVRDI 196 (306)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL-~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~----dls~ig~Di~~v~~~ 196 (306)
|-.++-+-++.....-+.+.+.+ ..+|..|.+.|..|-..+.+..+-++.+.+++...+. |...+..|+..++.+
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555544433334344443 3578888899988887766666655555555554443 334455555555555
Q ss_pred HHhHHHHHHHHh
Q 021850 197 VQTLESKLIEIE 208 (306)
Q Consensus 197 V~~Le~Ki~~ie 208 (306)
+.+-.+.|..++
T Consensus 158 l~~~~g~I~~L~ 169 (184)
T PF05791_consen 158 LAGENGDIPQLQ 169 (184)
T ss_dssp HHHTT--HHHHH
T ss_pred HhcccCCHHHHH
Confidence 555555554443
No 89
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=71.49 E-value=1.4e+02 Score=32.80 Aligned_cols=91 Identities=9% Similarity=0.183 Sum_probs=46.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
+-+..+-..+......-...+..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..-
T Consensus 373 ~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~LnsA 445 (717)
T PF09730_consen 373 AELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNSA 445 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444445555566677777777777777766655444444444 333334444555555544555433
Q ss_pred hhhhhhHhHHHHHHHHHH
Q 021850 208 EGKQDITTLGVKKLCDRA 225 (306)
Q Consensus 208 e~kQd~tn~GV~~LC~f~ 225 (306)
..-=..--..+.-|+.++
T Consensus 446 QDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 446 QDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444444443
No 90
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=71.28 E-value=11 Score=28.79 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=32.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+..||+.|..|+--+....+...+.|++-+.. |+.++..+..|..||..++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~-------I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQ-------IDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc
Confidence 56788888888877777777777777555544 4666666666777777665
No 91
>PRK09793 methyl-accepting protein IV; Provisional
Probab=71.00 E-value=1.1e+02 Score=30.98 Aligned_cols=8 Identities=0% Similarity=0.098 Sum_probs=2.9
Q ss_pred hhhhHHHH
Q 021850 158 VDRDVNKI 165 (306)
Q Consensus 158 vD~kLDeq 165 (306)
+....++|
T Consensus 287 ls~~~e~q 294 (533)
T PRK09793 287 LSSRTEQQ 294 (533)
T ss_pred HHHHHHHH
Confidence 33333333
No 92
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.66 E-value=38 Score=36.73 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~ 180 (306)
...|+.++..|+..+-...++|.+-.+..+++...++
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666555555555543333
No 93
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.65 E-value=73 Score=37.49 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=17.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsq 153 (306)
+-.+.+.++++.+....+++++++..
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776553
No 94
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.07 E-value=23 Score=35.36 Aligned_cols=87 Identities=14% Similarity=0.274 Sum_probs=56.5
Q ss_pred CCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhh-------hhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021850 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV-------DRDVNKIVEISQATQEEVTILRGRSKLI 186 (306)
Q Consensus 114 s~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~v-------D~kLDeq~eis~~ik~eV~~v~~dls~i 186 (306)
++...+-.||.-|..--+.+++.||.+.+ =.+||.++++.+ -++|.+..+--++...-|++....+.+|
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~s----REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIES----REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46788889999999988888887776554 455555555544 3444444444555555677777777777
Q ss_pred hhHHHHHHHHHHhHHHHH
Q 021850 187 GDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 187 g~Di~~v~~~V~~Le~Ki 204 (306)
..+++.++.-++.=+.+|
T Consensus 307 seeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 307 SEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 777777775554444333
No 95
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=69.58 E-value=53 Score=33.78 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=61.8
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHH---HHHHhh
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC---DRAREL 228 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC---~f~~~l 228 (306)
..++..+-.++.+|.++-+.+++-+..-+.+++.+..||..+|+.-..|..|+.--......=+.=|..+. +.+..+
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I 92 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSI 92 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhH
Confidence 35788888899999999999999999999999999999999999999999999843333333333333322 334455
Q ss_pred hcCCCcc
Q 021850 229 ENGRPTE 235 (306)
Q Consensus 229 e~~~~~~ 235 (306)
-+++..+
T Consensus 93 ~~~~v~e 99 (508)
T PF04129_consen 93 CEGPVNE 99 (508)
T ss_pred hcCCCCH
Confidence 5555443
No 96
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=69.56 E-value=12 Score=37.11 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=52.9
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~ 195 (306)
+.++.|..+-++||.|+.=.-+--..+..|++.|..+.|+ -..-+--+++..+++.++..+++|+..+-.
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~ 114 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLEN 114 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999875 111122234556666666666666655543
No 97
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.67 E-value=50 Score=25.73 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
.|.+.+.-|..|+|.++.|+.......+.+..|=...-.-+..-..++..++.-++.|...+++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888889999999999888888888887766555556666677777777777777776643
No 98
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.22 E-value=20 Score=36.01 Aligned_cols=65 Identities=14% Similarity=0.292 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
+-..+|.+..+++.+..+ .++++++|+... .-..+.+.+..++..+.+-+..||.++..++.+-+
T Consensus 33 ld~~~r~l~~~~~~lr~~---rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 33 LDEERRELQTELEELQAE---RNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888777766 566677776521 11123444555555566555555555555555433
No 99
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.16 E-value=82 Score=27.45 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=6.5
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 021850 190 FQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 190 i~~v~~~V~~Le~Ki~~i 207 (306)
++.+...+..+...+..+
T Consensus 132 l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 132 LDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.01 E-value=1.2e+02 Score=29.32 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDe 164 (306)
|+.-.+.|..-++.|...++.++.-+.+
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~ 181 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPK 181 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444433333
No 101
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.62 E-value=87 Score=30.32 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=57.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 134 tKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
.++|++.-+.|.+.+.....++..|...+++..+-.+.+++||.-++-=-+ -.+-+.+++ +..|...|..+-..|.-
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EYPvK~vq--Ia~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEYPVKAVQ--IANLVRQLQQLKDSQQD 138 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 367888888888888888888888888888888888888888866543221 223333333 44555555555555555
Q ss_pred HhHHHHHHHH
Q 021850 214 TTLGVKKLCD 223 (306)
Q Consensus 214 tn~GV~~LC~ 223 (306)
-..-+..+|+
T Consensus 139 Eldel~e~~~ 148 (258)
T PF15397_consen 139 ELDELNEMRQ 148 (258)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 102
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=67.29 E-value=85 Score=29.14 Aligned_cols=82 Identities=12% Similarity=0.258 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
.+....+.++++|......+..+| .+++.++..++....=....+++++.+..+...+..+.+..+.-...|+..|
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556655555555443 3455555555555555666666777777777777777777777777777776
Q ss_pred HHHhhh
Q 021850 205 IEIEGK 210 (306)
Q Consensus 205 ~~ie~k 210 (306)
..+..+
T Consensus 97 ~~l~~~ 102 (264)
T PF06008_consen 97 QNLQDN 102 (264)
T ss_pred HHHHHH
Confidence 655544
No 103
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=67.28 E-value=99 Score=28.64 Aligned_cols=7 Identities=29% Similarity=0.563 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 021850 61 LLAEVSS 67 (306)
Q Consensus 61 L~aQV~~ 67 (306)
+++++..
T Consensus 135 ll~~~~~ 141 (291)
T TIGR00996 135 LLGSLTR 141 (291)
T ss_pred HHHHHHH
Confidence 4444333
No 104
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=66.73 E-value=86 Score=29.50 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=61.9
Q ss_pred hhHHHHHHHHh--hhhhhHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHhhhchhhhhh---HHH
Q 021850 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSKLIGD---EFQ 191 (306)
Q Consensus 124 RnmsnAv~svt--KqLeqVs~sL~~tKkhLsqRId~vD-------~kLDeq~eis~~ik~eV~~v~~dls~ig~---Di~ 191 (306)
|.|-+|...++ +.|+..++.|-.|+..|.-=|+.-. +-+|.+..++..+.++...+.....++-. +..
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777665 6777777888788777754332211 22333333444444444444433222111 122
Q ss_pred HHHHHHHh--------------HHHHHH---HHhhhhhhHhHHHHHHHHHHHhhhcCCCccccc
Q 021850 192 SVRDIVQT--------------LESKLI---EIEGKQDITTLGVKKLCDRARELENGRPTELVQ 238 (306)
Q Consensus 192 ~v~~~V~~--------------Le~Ki~---~ie~kQd~tn~GV~~LC~f~~~le~~~~~~~~Q 238 (306)
.++..+.. +...+- .-..-||.|-+=|....+.++.+|..-..-++.
T Consensus 106 e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ll~~ 169 (214)
T PRK11166 106 DARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLE 169 (214)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333322 223333 234578899999999988888888766554443
No 105
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=66.55 E-value=17 Score=33.62 Aligned_cols=52 Identities=10% Similarity=0.305 Sum_probs=32.1
Q ss_pred hhhhhhhhHHHHHHHHHH--HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 154 KITSVDRDVNKIVEISQA--TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 154 RId~vD~kLDeq~eis~~--ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
||.++....+...++-+. +-+|+-+++..++++..||++++.-...|+.+++
T Consensus 140 rl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 140 RLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444443333332 3466778888888888888888866666666665
No 106
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=66.52 E-value=27 Score=27.96 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
...+|.+..+++.+-.+ .++++++|..-... +.+.+.+..++..+..-+..+|.++..++.
T Consensus 35 d~~~r~l~~~~e~lr~~---rN~~sk~I~~~~~~-~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 35 DQERRELQQELEELRAE---RNELSKEIGKLKKA-GEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHT-TCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555665555554 44445444432211 133444444444444444444444444433
No 107
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=66.52 E-value=1.5e+02 Score=30.41 Aligned_cols=6 Identities=0% Similarity=0.196 Sum_probs=2.2
Q ss_pred HHHHHH
Q 021850 127 SDACNS 132 (306)
Q Consensus 127 snAv~s 132 (306)
.++++.
T Consensus 253 a~s~n~ 258 (554)
T PRK15041 253 AESLRH 258 (554)
T ss_pred HHHHHH
Confidence 333333
No 108
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=66.51 E-value=55 Score=24.92 Aligned_cols=62 Identities=11% Similarity=0.296 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
|....+.|.+.|+..+..|.+ +...=-.+.-++-+.+..+..++..++..+..|...+..+.
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~---~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRK---LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555554422 22222234445555566666666667766666666666554
No 109
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=66.41 E-value=29 Score=36.09 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021850 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (306)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~ 198 (306)
..+|+.|..--+++..+++.++..+.+..+..+.++++-..++..+..+..++..++..|+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888888888888888888888888877777776654
No 110
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=65.79 E-value=94 Score=29.18 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=61.7
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~ 196 (306)
++|=..-.++.+ .+..++.|..+.++.++++ +-++.++.+...|+..+.+=+.--++.+.--...++|..|-+++|+=
T Consensus 103 ~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ 180 (202)
T TIGR03513 103 TLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEE 180 (202)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544 6677788888888888888 67888888888888877765544444444444455667788888888
Q ss_pred HHhHHHHHHHH
Q 021850 197 VQTLESKLIEI 207 (306)
Q Consensus 197 V~~Le~Ki~~i 207 (306)
++.|-..|.++
T Consensus 181 ~~kLa~NL~sL 191 (202)
T TIGR03513 181 MEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHH
Confidence 88887777755
No 111
>PRK02119 hypothetical protein; Provisional
Probab=65.48 E-value=26 Score=27.41 Aligned_cols=49 Identities=8% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
.+..||+.|..|+--|........+.|++-+..+ +.++.-+..|-.++.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl~ 54 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4677888888888777766666666665555444 444444444444544
No 112
>PRK00295 hypothetical protein; Provisional
Probab=65.38 E-value=27 Score=26.93 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=30.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
+..||..|..|+--|........+.|+.-+..+ +.++..+..|-.|+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I-------~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVI-------ERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 456788888887777777666666665555444 4444444444455554
No 113
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=65.22 E-value=1.2e+02 Score=28.40 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhh---HhHHHHHHHHHHHh
Q 021850 190 FQSVRDIVQTLESKLIEIEGKQDI---TTLGVKKLCDRARE 227 (306)
Q Consensus 190 i~~v~~~V~~Le~Ki~~ie~kQd~---tn~GV~~LC~f~~~ 227 (306)
...+++-|..-..||.++|.+|+- .|.=+.-||-+..+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 456677777778888888888864 57778889987753
No 114
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.09 E-value=1.1e+02 Score=34.99 Aligned_cols=78 Identities=12% Similarity=0.190 Sum_probs=41.9
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~ 196 (306)
-..-|.++......+...+++.-+.+...+..+.-==..++....+..++...-+.+..+++..+..+..+++.+..+
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGY 956 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777777776665554433333333333334444444444444444444444444444433
No 115
>PRK02224 chromosome segregation protein; Provisional
Probab=64.89 E-value=1.6e+02 Score=31.71 Aligned_cols=18 Identities=0% Similarity=0.163 Sum_probs=9.0
Q ss_pred HHHHHHHhhhhhhhhHHH
Q 021850 147 AQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDe 164 (306)
.++.+..+++.+...|++
T Consensus 181 ~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555444
No 116
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=64.73 E-value=38 Score=25.59 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~ 180 (306)
...++++.+.++++...-...|+ +.|..+...||+..++.+++.-||..+-
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~---~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRK---SLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHhhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34567777777777744443444 4566677889999999999999887663
No 117
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=64.56 E-value=81 Score=26.11 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhhch
Q 021850 168 ISQATQEEVTILRGRS 183 (306)
Q Consensus 168 is~~ik~eV~~v~~dl 183 (306)
+...+++.+..+...+
T Consensus 105 ~~~~~~~~~~~~~~~l 120 (202)
T PF01442_consen 105 LESRLEEEVDELEESL 120 (202)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333444444333
No 118
>PRK02793 phi X174 lysis protein; Provisional
Probab=64.43 E-value=24 Score=27.52 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
.+.+||..|..++--|.......-+.|++-+..+ +.++..+.-|-.|+.++
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 3778888888888777777777777775555444 44555555555555543
No 119
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.41 E-value=1.2e+02 Score=31.39 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 168 is~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
..+.++.|+.+++.++..+..|+..++..|..|...|...-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~ 323 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKE 323 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888888888888888877765443
No 120
>PRK00846 hypothetical protein; Provisional
Probab=63.82 E-value=35 Score=27.37 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
-..+.+||+.|..++--|...+....+.|++-+..+ +.++..+.-|-.|+..++
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I-------~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTG-------ARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 456889999999998888887777777776655444 555555555556666554
No 121
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.81 E-value=99 Score=30.28 Aligned_cols=107 Identities=15% Similarity=0.205 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHH---HHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021850 123 RRSLSDACNSVARQLEDVYSSISA---AQRQLSSKITSVDRDVNKI----VEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sL~~---tKkhLsqRId~vD~kLDeq----~eis~~ik~eV~~v~~dls~ig~Di~~v~~ 195 (306)
.-.|.+--+.+.++++.+.+.+.. -+..|...+..+..--++. .+.-..+++++.+...+++....++..++.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666555544333 2333344444433333332 112233334444444444444444444444
Q ss_pred HHHhHHHHHHHHhh------------------hhhhHhHHHHHHHHHHHhhh
Q 021850 196 IVQTLESKLIEIEG------------------KQDITTLGVKKLCDRARELE 229 (306)
Q Consensus 196 ~V~~Le~Ki~~ie~------------------kQd~tn~GV~~LC~f~~~le 229 (306)
-+..++.+|..... ...+|..=|..|++-+..++
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 44444444443322 45555555666655444333
No 122
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.72 E-value=63 Score=36.89 Aligned_cols=63 Identities=11% Similarity=0.278 Sum_probs=44.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEV-TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV-~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
.+|...+|+..-...|.+...+..++++. ..+...++++.++++.+..-|+.+|.-+.++..+
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33677777777777777777777777776 6677777777777777777777777666655543
No 123
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=63.41 E-value=52 Score=34.85 Aligned_cols=85 Identities=9% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCCchhhhhhhhHHHHH----HHHhhhh-------hhHHHHHHHHHHHHHHhhhhhhhh--------HHHHHHHHHHHHH
Q 021850 114 KLPDMMFATRRSLSDAC----NSVARQL-------EDVYSSISAAQRQLSSKITSVDRD--------VNKIVEISQATQE 174 (306)
Q Consensus 114 s~SDlMyVTKRnmsnAv----~svtKqL-------eqVs~sL~~tKkhLsqRId~vD~k--------LDeq~eis~~ik~ 174 (306)
.-++.+.-+-+.|+++. +...++| ..|+.-+.-..+.|..||..+... +++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888877664 3333344 444444455556666666655432 4445555566666
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHH
Q 021850 175 EVTILRGRSKLIGDEFQSVRDIVQ 198 (306)
Q Consensus 175 eV~~v~~dls~ig~Di~~v~~~V~ 198 (306)
...++++.++.+..||..|.....
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~ 436 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCD 436 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 666677777777777777665544
No 124
>PLN02678 seryl-tRNA synthetase
Probab=62.89 E-value=29 Score=35.57 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
+..-+|.+..+++.+..+ .++++++|... ..-.++.+.+...+..+.+-+..||.++.+++.+
T Consensus 38 ld~~~r~l~~~~e~lr~e---rN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKE---FNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777665 56667777541 1222333334444444444444444444444443
No 125
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.71 E-value=66 Score=32.16 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~ 170 (306)
+.++.-.+.+.+.+..+.++|+.++.++.......+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 161 DKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555555555444444
No 126
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=62.71 E-value=84 Score=34.56 Aligned_cols=48 Identities=6% Similarity=0.046 Sum_probs=28.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhhhcC
Q 021850 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~le~~ 231 (306)
.+...++..+.+.+..+..++.++.......-.+...|-+|...+.+.
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (910)
T TIGR00833 603 ASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMGKL 650 (910)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555566666666777766665555556666666666655543
No 127
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=62.38 E-value=47 Score=39.82 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhh
Q 021850 135 RQLEDVYSSISAAQRQLSSKITS 157 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~ 157 (306)
.+++++...|+..|+||....+.
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544443
No 128
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=62.36 E-value=44 Score=30.55 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
||...|+.+-.+|.+.+|.....|++. ++.+.+++ ..++.+....+.++..+.-|+..|+..+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~e---I~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDE---IKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777666655554322 22222222 22345566677777788888888776543
No 129
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=61.97 E-value=1.1e+02 Score=26.78 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=13.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
..+...+...+..+...-.||...+.+.
T Consensus 141 ~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 141 SSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444445555554433
No 130
>PRK04325 hypothetical protein; Provisional
Probab=61.95 E-value=33 Score=26.90 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
.+..||+.|..|+--|...+...-+.|++-+..+ +.++..+.-|-.|+.++
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 3677888888888777777777777675555444 44455555555566544
No 131
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.84 E-value=32 Score=32.32 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH--HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV--TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV--~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
.+..++..+.+.+++.+..+... +.+.|-||= .-=+..+..+-+|++.+++.|.-||.|++++|.|
T Consensus 134 ~~~~~l~~~~~~l~~~~~~~q~~------~Ae~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 134 SVVRALRSGSRFLKHGLKQLQRN------LAEAITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555656665555443333 233333331 1223456789999999999999999999999876
No 132
>PHA03386 P10 fibrous body protein; Provisional
Probab=61.79 E-value=20 Score=30.01 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 186 IGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 186 ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
|..||+.+...|..|-..++.+++
T Consensus 10 Ir~dIkavd~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 10 ILDAVQEVDTKVDALQTQLNGLEE 33 (94)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 444444444444444444444444
No 133
>PRK10698 phage shock protein PspA; Provisional
Probab=61.30 E-value=82 Score=29.15 Aligned_cols=80 Identities=10% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH---------HHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA---------TQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~---------ik~eV~~v~~dls~ig~Di~~v~~~V~~L 200 (306)
|+.-...|+.-++....+-..|...+..|..|+.+...=... .+..|++.-. +.|..+--..+..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~-----~~~~~~a~~~f~rm 171 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD-----SGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchHHHHHHHH
Confidence 555555555555555556666666666666666554432221 1222222222 34445556677778
Q ss_pred HHHHHHHhhhhhhH
Q 021850 201 ESKLIEIEGKQDIT 214 (306)
Q Consensus 201 e~Ki~~ie~kQd~t 214 (306)
|.||+++|..-+..
T Consensus 172 E~ki~~~Ea~aea~ 185 (222)
T PRK10698 172 ERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHhHh
Confidence 88888888876653
No 134
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=61.20 E-value=99 Score=29.04 Aligned_cols=92 Identities=18% Similarity=0.287 Sum_probs=61.1
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHH--HHHHHHHhhhchhhhhhHHH
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQA--TQEEVTILRGRSKLIGDEFQ 191 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkh---LsqRId~vD~kLDeq~eis~~--ik~eV~~v~~dls~ig~Di~ 191 (306)
...---+.++.+.+...-++++++.+.+...|+. |.++|..+..+++...+.... .+..|+..-++.+. .+.+.
T Consensus 88 r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~ 166 (225)
T COG1842 88 REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMA 166 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHH
Confidence 3334456788899999888888888888777764 567888888887766554433 34667777777665 44444
Q ss_pred HHHHHHHhHHHHHHHHhhhhhh
Q 021850 192 SVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
.+ .-++.|++++|..=+.
T Consensus 167 ~f----er~e~kiee~ea~a~~ 184 (225)
T COG1842 167 AF----ERMEEKIEEREARAEA 184 (225)
T ss_pred HH----HHHHHHHHHHHHHHHH
Confidence 43 3456777766664443
No 135
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.19 E-value=32 Score=27.57 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=27.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (306)
...|.+||..|.+++--|......+-+.|++-+-.++
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~ 39 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVID 39 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999998887777777777766555443
No 136
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=61.18 E-value=5.3 Score=32.70 Aligned_cols=15 Identities=40% Similarity=0.915 Sum_probs=11.1
Q ss_pred hhhhheeeeEEeccc
Q 021850 99 VIVAVGYGYVWWKGW 113 (306)
Q Consensus 99 viGavGYgYmwWKGw 113 (306)
++.++=++|.|||-|
T Consensus 12 ~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 12 AVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556789999976
No 137
>PRK00736 hypothetical protein; Provisional
Probab=61.07 E-value=33 Score=26.47 Aligned_cols=49 Identities=8% Similarity=0.202 Sum_probs=31.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
+..||+.|..|+--|....+...+.|+.-+..+ +.++.-+.-|-.|+.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 456788888888777777777777775555444 4445445555555554
No 138
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=61.04 E-value=7.6 Score=40.97 Aligned_cols=62 Identities=11% Similarity=0.267 Sum_probs=47.9
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHH-------HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL-------~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d 182 (306)
|-+++=.+|++.++++|..+.+-. ...=.++.+||+++++++|+...=.-.-+.|+-.+-++
T Consensus 364 AD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN 432 (550)
T PF00509_consen 364 ADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLEN 432 (550)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhcc
Confidence 678999999999999999888755 33445788999999999999877666666665444433
No 139
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=60.98 E-value=1.1e+02 Score=26.51 Aligned_cols=82 Identities=12% Similarity=0.291 Sum_probs=60.6
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhc--hhhhhhHHH----HHHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR--SKLIGDEFQ----SVRDIV 197 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d--ls~ig~Di~----~v~~~V 197 (306)
.++..-.+++..+++++-..=.+.+.+..++-+..+..|+++.+.-..+.+....+..+ +.-++++.+ ......
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 56666677888888888777778889999999999999999999999999887777654 333444444 445555
Q ss_pred HhHHHHHH
Q 021850 198 QTLESKLI 205 (306)
Q Consensus 198 ~~Le~Ki~ 205 (306)
..||.+|.
T Consensus 103 ~~L~k~I~ 110 (126)
T PF09403_consen 103 NKLDKEIA 110 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555555
No 140
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.79 E-value=1.2e+02 Score=31.93 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=16.6
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
++++.+++.++..+..+++.+..-+..++.++..+
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555544433
No 141
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=60.61 E-value=83 Score=24.93 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
.+|.++|..+++.+.+-+++-...++...+=++.+++ +......+++-+..=+.++..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~----~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRS----TNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999998888776655544444332 12222334444444444444444
No 142
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=60.39 E-value=67 Score=38.86 Aligned_cols=79 Identities=10% Similarity=0.183 Sum_probs=62.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+.-+-..+.+..+.+..+|+.+..|++.....++....-.....+--..++.+++....|++..+.++..||.|+...+
T Consensus 1363 ~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~ 1441 (1930)
T KOG0161|consen 1363 KKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE 1441 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455567888999999999999999998888888777777788888888889999999999999988877443
No 143
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=60.22 E-value=95 Score=27.87 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=35.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
.=|+.+...-++.-+|++..++|...++..+..+..++..+-.-|..|+
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777777777777777777777777776
No 144
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.04 E-value=52 Score=31.97 Aligned_cols=55 Identities=11% Similarity=0.256 Sum_probs=27.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
|++=|.++.+..+-.+.+++||..+...++.+...+++.+.-+..+..+|..++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666655555555555555544444444444444444444444444443333
No 145
>PRK03918 chromosome segregation protein; Provisional
Probab=59.66 E-value=1.1e+02 Score=32.59 Aligned_cols=11 Identities=0% Similarity=0.465 Sum_probs=4.3
Q ss_pred HhhhhhhhhHH
Q 021850 153 SKITSVDRDVN 163 (306)
Q Consensus 153 qRId~vD~kLD 163 (306)
.+|+.+..+++
T Consensus 640 ~~i~~l~~~~~ 650 (880)
T PRK03918 640 KRLEELRKELE 650 (880)
T ss_pred HHHHHHHHHHH
Confidence 34444433333
No 146
>PRK02224 chromosome segregation protein; Provisional
Probab=59.64 E-value=1.6e+02 Score=31.61 Aligned_cols=16 Identities=6% Similarity=0.372 Sum_probs=8.9
Q ss_pred ccceeeecCCCccchh
Q 021850 16 ILTSVLAKEGRLSSVS 31 (306)
Q Consensus 16 ~~GSVl~knGkLsD~~ 31 (306)
|..+|++.-|.+..|+
T Consensus 129 f~~~~~i~Qge~~~~l 144 (880)
T PRK02224 129 FVNCAYVRQGEVNKLI 144 (880)
T ss_pred hcceeEeeccChHHHH
Confidence 4455556655555554
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=59.60 E-value=25 Score=33.16 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=16.5
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
+.||..+|+.+++...+++.+++--..+=..|+
T Consensus 67 q~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 67 QSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544444444444
No 148
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.60 E-value=87 Score=32.94 Aligned_cols=43 Identities=5% Similarity=0.092 Sum_probs=19.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
+..+++.++.+++++.+-.+..+.++..++..++.+..++..+
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 149
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.60 E-value=42 Score=36.95 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHH
Q 021850 145 SAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~e 167 (306)
......+..+|.++|++|+....
T Consensus 39 d~li~ki~~eir~~d~~l~~~Vr 61 (793)
T KOG2180|consen 39 DSLIQKIQGEIRRVDKNLLAVVR 61 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677777777665543
No 150
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.58 E-value=46 Score=36.21 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 162 LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
+.|++-|-.....|+++++..-.++.+||..++..++.|-
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk 120 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELK 120 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666665555554
No 151
>PRK09110 flagellar motor protein MotA; Validated
Probab=59.03 E-value=58 Score=31.47 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=69.5
Q ss_pred ehhhhhhhhheeeeEEecc-----cCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHh---hhhhhhhHHHH
Q 021850 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (306)
Q Consensus 94 ~~~ivviGavGYgYmwWKG-----ws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqR---Id~vD~kLDeq 165 (306)
.|+++++|++.+||++=.| |.+|-+|-|-=-.+ ++.-++--+..+-.++...++-+..+ -+...+-++..
T Consensus 5 iGli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l 82 (283)
T PRK09110 5 IGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALL 82 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4567788888889988666 77888888876544 44456777889999999999988744 66667778888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 021850 166 VEISQATQEE-VTILRGRSKLIGD 188 (306)
Q Consensus 166 ~eis~~ik~e-V~~v~~dls~ig~ 188 (306)
.+++...|++ +-.+..+++++.+
T Consensus 83 ~~l~~~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 83 YELLRKARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8888888876 6666666666653
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.95 E-value=1.2e+02 Score=32.99 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=35.5
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 175 eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
+...-..++.++.++.+.+++.-+.|..|++++.++|+.-..-+..+-+
T Consensus 573 ~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 573 QKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556677778888888888888888888888887777765543
No 153
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=58.89 E-value=90 Score=33.17 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~e 167 (306)
.+..++...+..-|+.--..+...-+.|..+|.+|.+++|-+.+
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq 379 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ 379 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56677777788888776677777778999999999999887654
No 154
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=58.77 E-value=54 Score=26.14 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=40.7
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 021850 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~e 167 (306)
--+||.+--.-|-+-|+|+.+...-.-..+..|||.+...+|+...
T Consensus 10 DpkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEK 55 (73)
T KOG4117|consen 10 DPKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEK 55 (73)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 3479999999999999999999999999999999999999887643
No 155
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.70 E-value=1.4e+02 Score=27.00 Aligned_cols=38 Identities=11% Similarity=0.377 Sum_probs=24.2
Q ss_pred cCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021850 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 113 ws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsq 153 (306)
|+||.-...+ +.+.++.+.+.++.+...++..+..|..
T Consensus 57 WsFps~~~~~---~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 57 WSFPSQAKQK---RQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred EecChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688765554 4556666777777766666666665544
No 156
>PRK03918 chromosome segregation protein; Provisional
Probab=58.53 E-value=68 Score=34.14 Aligned_cols=62 Identities=13% Similarity=0.333 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH---HHHHHhhhchhhhhhHHHHHHHHH
Q 021850 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIV 197 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik---~eV~~v~~dls~ig~Di~~v~~~V 197 (306)
.++..++.+....+.+..+|+.+...+.+..++.+.+. .++.++...++.+...+..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888766555444322 333344444444333333333333
No 157
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=58.42 E-value=54 Score=22.61 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=21.7
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
+.|+.+...+-++..+...|..+|.+=..-+.+|...++..+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~ 47 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNAD 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666665544444444444444443
No 158
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=57.92 E-value=26 Score=28.33 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
|+.|.+.|..+++++
T Consensus 18 l~~~~~~l~~~~~E~ 32 (105)
T cd00632 18 YIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 159
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=57.63 E-value=64 Score=34.39 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhHHHHHH
Q 021850 189 EFQSVRDIVQTLESKLI 205 (306)
Q Consensus 189 Di~~v~~~V~~Le~Ki~ 205 (306)
|++.--.+++.-+.+|.
T Consensus 439 dv~~A~~~L~~AD~~La 455 (656)
T PRK06975 439 NVQLALIALQNADARLA 455 (656)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 160
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=57.62 E-value=5.1 Score=32.96 Aligned_cols=74 Identities=14% Similarity=0.228 Sum_probs=40.3
Q ss_pred eeeEEEecCccceeeecCCCccchhHHhHhHHHHHHHhhhcCCCCCCCCchhHH--HHHHHHHHHHHHhcC--CCceEEE
Q 021850 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND--LLAEVSSVQQELSHV--PRSVIIE 82 (306)
Q Consensus 7 Kv~ILvGAG~~GSVl~knGkLsD~~~~lsg~lk~v~k~~k~~d~~~~~s~~~~~--L~aQV~~LaqElr~L--sR~iTVv 82 (306)
||+++.|+|+..|++++. +.....+. |. .+-..+.-.+..+. ...+.|- +.-||+..-.++++. ..||.++
T Consensus 5 kIllvC~~G~sTSll~~k--m~~~~~~~-gi-~~~V~A~~~~~~~~-~~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I 79 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSK--MRAQAEKY-EV-PVIIEAFPETLAGE-KGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVI 79 (106)
T ss_pred EEEEECCCCccHHHHHHH--HHHHHHHC-CC-CEEEEEeecchhhc-cccCCCEEEECHHHHHHHHHHHhhcCCCCEEEE
Confidence 799999999999999854 21111100 00 00000000111000 1122334 455999999999887 4688888
Q ss_pred eCC
Q 021850 83 TSS 85 (306)
Q Consensus 83 n~~ 85 (306)
+.-
T Consensus 80 ~~~ 82 (106)
T PRK10499 80 DSL 82 (106)
T ss_pred ChH
Confidence 764
No 161
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.60 E-value=61 Score=26.67 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021850 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~ 198 (306)
.-|.+..||++|.. |-+.|+..|+ ++=.+.+--|+|++.++.++.
T Consensus 15 QLrafIerIERlEe---Ek~~i~~dik----dvy~eakg~GFDvKa~r~iir 59 (85)
T COG3750 15 QLRAFIERIERLEE---EKKTIADDIK----DVYAEAKGHGFDVKAVRTIIR 59 (85)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCccHHHHHHHHH
Confidence 34555666666654 3445555444 444555567999999998875
No 162
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=57.11 E-value=74 Score=32.92 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=13.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHH
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQ 150 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkh 150 (306)
...+.++.+.|+++-..|..++..
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E 303 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEE 303 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666655544
No 163
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.04 E-value=84 Score=32.94 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
+|.++++-+.++++++.+++.+++.+....+..++.++.||..+..++..+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555544444444333334444444445555554444443
No 164
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=56.84 E-value=15 Score=32.18 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.6
Q ss_pred hhhhhheeeeEEecc
Q 021850 98 VVIVAVGYGYVWWKG 112 (306)
Q Consensus 98 vviGavGYgYmwWKG 112 (306)
++++++|-+|+||..
T Consensus 7 ~~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 7 LGLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556667788875
No 165
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=56.43 E-value=2.2e+02 Score=29.12 Aligned_cols=81 Identities=9% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH-----------HHHHHHHHHHHHhhhchhhhhhH-------
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-----------EISQATQEEVTILRGRSKLIGDE------- 189 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~-----------eis~~ik~eV~~v~~dls~ig~D------- 189 (306)
+.+..+-+...++.+++.+-|.++...+.-+-..|.|-. +.++.=++|+..++.++..+..-
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~e 298 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYE 298 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334555555555556666656555544444443333333 33333444555555544333322
Q ss_pred -HHHHHHHHHhHHHHHHHHh
Q 021850 190 -FQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 190 -i~~v~~~V~~Le~Ki~~ie 208 (306)
...|++.++..-.||..||
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 2345555555556666666
No 166
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.41 E-value=24 Score=26.84 Aligned_cols=8 Identities=13% Similarity=0.563 Sum_probs=2.9
Q ss_pred hhhhhhhH
Q 021850 155 ITSVDRDV 162 (306)
Q Consensus 155 Id~vD~kL 162 (306)
|+.+..++
T Consensus 2 i~elEn~~ 9 (55)
T PF05377_consen 2 IDELENEL 9 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 167
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.32 E-value=28 Score=34.52 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHhHHHHHH
Q 021850 187 GDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 187 g~Di~~v~~~V~~Le~Ki~ 205 (306)
...+..+.+.+..||.++-
T Consensus 171 ~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 171 EKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3344444445555555443
No 168
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=56.21 E-value=77 Score=27.14 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHhhhhhhHHHH---HHHHHHHHHHhhhhhhhhHHH
Q 021850 123 RRSLSDACNSVARQLEDVYSS---ISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~s---L~~tKkhLsqRId~vD~kLDe 164 (306)
|-.+++=.+++...||..-.+ |.+-|+.|....+.|...-+.
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s 55 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNAS 55 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555555555555544332 344444444444444444333
No 169
>PRK10698 phage shock protein PspA; Provisional
Probab=55.97 E-value=1.7e+02 Score=27.08 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=24.8
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 172 ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
..+.+..++..+.....-+..+..-+..|+.||.+...+++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666666666554
No 170
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=55.84 E-value=2.1e+02 Score=28.07 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ----EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik----~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
...-+-+...+-.|..|-+.|..++++..+....+. ++...++..+.....++...+..+..++..+..++.+=.-
T Consensus 164 ~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~ 243 (312)
T smart00787 164 MKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555555555555555543 3555566666666666666666666666666655554443
Q ss_pred Hh
Q 021850 214 TT 215 (306)
Q Consensus 214 tn 215 (306)
.+
T Consensus 244 ~~ 245 (312)
T smart00787 244 LT 245 (312)
T ss_pred HH
Confidence 33
No 171
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.77 E-value=1e+02 Score=31.38 Aligned_cols=84 Identities=8% Similarity=0.147 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHH---HHHHHhhhhhhh------------------hHHHHHHHHHHHHHHHHHhhhchh
Q 021850 126 LSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDR------------------DVNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tK---khLsqRId~vD~------------------kLDeq~eis~~ik~eV~~v~~dls 184 (306)
-+.++..+-++|+++.+.++++. ..+.+++.-++. .+.+..++...+.++..+++....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666555444332 334444433322 244555666666666666666666
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 185 LIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 185 ~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.+..++..+++.+..|+.++..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666677666666666666654
No 172
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=55.34 E-value=6.5 Score=34.02 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=0.0
Q ss_pred eeeEEEecCccceeeecCCCc
Q 021850 7 KLTFLVGAGILTSVLAKEGRL 27 (306)
Q Consensus 7 Kv~ILvGAG~~GSVl~knGkL 27 (306)
++..++.||++|||+.++|.+
T Consensus 96 ~~~~I~vaglaGsIlar~r~~ 116 (158)
T PF09769_consen 96 GLGYIGVAGLAGSILARRRGI 116 (158)
T ss_pred ceeeeehhhhheeeeeccCcc
No 173
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=55.11 E-value=60 Score=33.22 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=46.1
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhH---HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHH------HHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSL---SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN------KIVEIS 169 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnm---snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLD------eq~eis 169 (306)
..+++++||. ---.|.|=+.-|+..+ ...++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 3455555543 2334555555555444 66777778888888888877776 44455544333 223344
Q ss_pred HHHHHHHHHhhhchhhh
Q 021850 170 QATQEEVTILRGRSKLI 186 (306)
Q Consensus 170 ~~ik~eV~~v~~dls~i 186 (306)
+.++..++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44555555544444444
No 174
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=55.07 E-value=1.1e+02 Score=25.30 Aligned_cols=20 Identities=0% Similarity=0.268 Sum_probs=11.5
Q ss_pred HHHHHHhhhhhhHHHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAA 147 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~t 147 (306)
+-|.+|..+|..+...+..-
T Consensus 6 ~~v~~I~~~i~~i~~~v~~l 25 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEEL 25 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666555433
No 175
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=54.68 E-value=39 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=22.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHH
Q 021850 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsqRId~vD~kLD 163 (306)
+|++++|.+.+.|+..++ |++.|+.+|.
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~ 29 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLR 29 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHc
Confidence 578999999999988876 5677777764
No 176
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=54.64 E-value=26 Score=31.90 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=16.3
Q ss_pred HHHHHHhhhhhhh---hHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021850 148 QRQLSSKITSVDR---DVNKIVEISQATQEEVTILRGRSKLIGD 188 (306)
Q Consensus 148 KkhLsqRId~vD~---kLDeq~eis~~ik~eV~~v~~dls~ig~ 188 (306)
-.|+++||++++. +|.++.+.-.+|.+.|.+..++++.|++
T Consensus 113 L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d 156 (163)
T PF03233_consen 113 LEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRD 156 (163)
T ss_pred HHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 3333333334444444333333333333
No 177
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=54.59 E-value=45 Score=26.80 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~ 199 (306)
-|.+-.||++|+.. -++|+..|++--.++ .--|+|++.++++|.-
T Consensus 6 Lr~~ieRiErLEeE---k~~i~~dikdVyaEA----K~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 6 LRQFIERIERLEEE---KKAISDDIKDVYAEA----KGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HhCCCCHHHHHHHHHH
Confidence 35556666666654 444555554444444 5569999999998864
No 178
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=54.59 E-value=48 Score=26.78 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhhhcCCCccccccCC
Q 021850 187 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQSGS 241 (306)
Q Consensus 187 g~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~le~~~~~~~~Q~~s 241 (306)
..++..+|..+..|=.+++.+..--+---..=.+|++|+.++... ..++|.++
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~--s~v~~s~~ 74 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS--SSVFQSTS 74 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhccC
Confidence 345555666666666666666554444444556899999988664 44455433
No 179
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.35 E-value=2e+02 Score=27.36 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
+.+|+.+|..++..|
T Consensus 86 l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 86 LESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777787777777665
No 180
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=53.78 E-value=1.1e+02 Score=27.30 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=39.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 129 Av~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
+.+.+.+.|+.+.+.+..-+.+...=+..|..=-+++..=....+..+.++..-+..-+++|..++.-+..+.++|
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544444444444444555555555666666666666666666665554444443
No 181
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=53.78 E-value=58 Score=30.84 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=54.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH-----HH
Q 021850 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL-----IE 206 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki-----~~ 206 (306)
++-+|++..-+.=++.|.++..-++.++.++.+....-+.+-..-+-+-........|+..+.+.-.+|-... .+
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyyr 85 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPPAGQYYR 85 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCccceEE
Confidence 5556666666655666666655555555554443333322221111111111222334444554444444333 24
Q ss_pred HhhhhhhHhHHHHHHHHHHHhhhcC
Q 021850 207 IEGKQDITTLGVKKLCDRARELENG 231 (306)
Q Consensus 207 ie~kQd~tn~GV~~LC~f~~~le~~ 231 (306)
..++=++...++-+|..|+..+|-+
T Consensus 86 y~~~w~~~~Q~vv~l~alv~~Let~ 110 (226)
T KOG3067|consen 86 YNGHWRRSTQRVVSLPALVAWLETG 110 (226)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhc
Confidence 5556788899999999999998887
No 182
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=53.70 E-value=56 Score=32.95 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 021850 59 NDLLAEVSSVQQELSH 74 (306)
Q Consensus 59 ~~L~aQV~~LaqElr~ 74 (306)
++|..+..+|.+++..
T Consensus 230 d~L~~~ltrL~~~~~~ 245 (370)
T PLN03094 230 DELVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3466666666666544
No 183
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=53.47 E-value=2.1e+02 Score=28.49 Aligned_cols=17 Identities=6% Similarity=-0.085 Sum_probs=8.4
Q ss_pred chhhhhhhhHHHHHHHH
Q 021850 117 DMMFATRRSLSDACNSV 133 (306)
Q Consensus 117 DlMyVTKRnmsnAv~sv 133 (306)
+..-.|..|+..|=+.+
T Consensus 201 ~W~~~s~~ni~~a~~e~ 217 (384)
T PF03148_consen 201 SWEEFSNENIQRAEKER 217 (384)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566655554433
No 184
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=53.46 E-value=48 Score=25.33 Aligned_cols=15 Identities=7% Similarity=0.472 Sum_probs=10.3
Q ss_pred HHHHhhhhhhhhHHH
Q 021850 150 QLSSKITSVDRDVNK 164 (306)
Q Consensus 150 hLsqRId~vD~kLDe 164 (306)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566677777777766
No 185
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.25 E-value=1.1e+02 Score=29.89 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
..|...+.+|.+.|..+..+.++..+--...-.+.+..+..+.++..+.+++.....-...++++++.
T Consensus 67 ~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 67 EELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666666666555555555555666666666666777777777666666666665543
No 186
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.99 E-value=2.2e+02 Score=27.43 Aligned_cols=84 Identities=10% Similarity=0.180 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH---hhh--hhhhhHHHHHHHHHHHHHHHHHhhhchhhh-------hhH
Q 021850 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS---KIT--SVDRDVNKIVEISQATQEEVTILRGRSKLI-------GDE 189 (306)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL~~tKkhLsq---RId--~vD~kLDeq~eis~~ik~eV~~v~~dls~i-------g~D 189 (306)
.++.-.+|+.-+.++|+.....|.++.+.|.. +=. .++..-....+....++.+..+++..+..+ +=+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 44556789999999999999999999877654 111 122222233444555555555555554443 233
Q ss_pred HHHHHHHHHhHHHHHH
Q 021850 190 FQSVRDIVQTLESKLI 205 (306)
Q Consensus 190 i~~v~~~V~~Le~Ki~ 205 (306)
+..++.-+..|+.+|.
T Consensus 244 v~~l~~~i~~l~~~i~ 259 (362)
T TIGR01010 244 VPSLQARIKSLRKQID 259 (362)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 187
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.91 E-value=80 Score=27.43 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhch--hhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 165 IVEISQATQEEVTILRGRS--KLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 165 q~eis~~ik~eV~~v~~dl--s~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
...-.+..+.++..+.... +++...|..+..-+..|+.||..+..
T Consensus 91 l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 91 LKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444443333 33455555555555566666665543
No 188
>PRK04098 sec-independent translocase; Provisional
Probab=52.79 E-value=42 Score=30.34 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (306)
.-|-.+...+++-+..+-..+..+|.++.+-|. +++--++.....+.+.+.+..++.
T Consensus 23 ~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 23 DKLPQAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677788888888888888888888887653 222222223334444444444544
No 189
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.79 E-value=41 Score=28.58 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
++...|..+|.+|.+-=+.|.+..++..++-..+.++-
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666665666666666666655555544
No 190
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=52.53 E-value=23 Score=29.65 Aligned_cols=47 Identities=6% Similarity=0.273 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA 171 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ 171 (306)
++.+++..+..-|.++.+.+.+++..+..+.+.+..++++..++...
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~ 112 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREE 112 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999998887665543
No 191
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=52.30 E-value=1.1e+02 Score=30.58 Aligned_cols=45 Identities=9% Similarity=0.184 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl 183 (306)
+=+..|+++-+...++++.+..-+++|..-...=+..+.++...+
T Consensus 11 ~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sL 55 (330)
T PF07851_consen 11 KEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSL 55 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544433333333333333333
No 192
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.26 E-value=1.9e+02 Score=31.91 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=85.0
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
..+.++|..+.++++-+-....+..+...++.....+++-+...+...-..-..+++..+-....++..+|.-+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999988888888888888888888889999999999998888
Q ss_pred HHHHhhhhhhHhHHHHHHHHHH
Q 021850 204 LIEIEGKQDITTLGVKKLCDRA 225 (306)
Q Consensus 204 i~~ie~kQd~tn~GV~~LC~f~ 225 (306)
+++....=+-.+.-+..+-+-.
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~~l 216 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQASL 216 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8866655555555554444333
No 193
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=52.22 E-value=1.9e+02 Score=26.39 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=29.3
Q ss_pred CchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021850 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 116 SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsq 153 (306)
.+-|--.|+...+....+-+...+.+..+..+|+..-+
T Consensus 95 ~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 95 ASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566788888888888888888888888888877653
No 194
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=52.19 E-value=2e+02 Score=28.75 Aligned_cols=60 Identities=10% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHH--------------HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021850 129 ACNSVARQLEDVYSSISAAQR--------------QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (306)
Q Consensus 129 Av~svtKqLeqVs~sL~~tKk--------------hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~ 188 (306)
..+.+.+.+.++.+.|..+.+ +....|..|-.++.+.++-++.++.-|.++=.|+.+...
T Consensus 26 ~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~ 99 (383)
T PF04100_consen 26 LIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDN 99 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554433 233445566666666666666666666666666665444
No 195
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.17 E-value=1.1e+02 Score=31.65 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD 159 (306)
++...+...|++++..|..+...|....+.++
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~ 297 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELE 297 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35566667777777777777777766555543
No 196
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.13 E-value=95 Score=32.12 Aligned_cols=91 Identities=9% Similarity=0.198 Sum_probs=54.2
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK---IVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe---q~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
|......+.|... .-..++.+.+.+..+...|..=...+...++. --+--..+++.+..++.-....+.+++.+
T Consensus 251 ~~l~~~~~~l~~~---~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l 327 (563)
T TIGR00634 251 EGLGEAQLALASV---IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEV 327 (563)
T ss_pred HHHHHHHHHHHHh---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4444444444444 44566666666666665555444444443332 23344556666777777666667788888
Q ss_pred HHHHHhHHHHHHHHhhh
Q 021850 194 RDIVQTLESKLIEIEGK 210 (306)
Q Consensus 194 ~~~V~~Le~Ki~~ie~k 210 (306)
......++.+++.++..
T Consensus 328 ~~~~~~l~~eL~~l~~~ 344 (563)
T TIGR00634 328 LEYAEKIKEELDQLDDS 344 (563)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 88888888777766553
No 197
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=52.00 E-value=1.5e+02 Score=31.95 Aligned_cols=84 Identities=11% Similarity=0.159 Sum_probs=57.6
Q ss_pred chhhhhhhhHHH----HHHHHhhhh---hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021850 117 DMMFATRRSLSD----ACNSVARQL---EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (306)
Q Consensus 117 DlMyVTKRnmsn----Av~svtKqL---eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (306)
|+|+.--..|+. +-.++++-. +...+.+...-.+|.|.+|.-|.+++++..+...++.++-.=.+.++.-..+
T Consensus 385 ~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~ 464 (607)
T KOG0240|consen 385 DFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRL 464 (607)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 456555555553 333444443 5788889999999999999999999999999999988876655555555555
Q ss_pred HHHHHHHHHhH
Q 021850 190 FQSVRDIVQTL 200 (306)
Q Consensus 190 i~~v~~~V~~L 200 (306)
.+.++.-...+
T Consensus 465 ~e~~q~e~~~~ 475 (607)
T KOG0240|consen 465 YEDIQQELSEI 475 (607)
T ss_pred HHHHHHHHHHH
Confidence 55554443333
No 198
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.98 E-value=2.1e+02 Score=33.91 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=25.2
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhh
Q 021850 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (306)
Q Consensus 177 ~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~l 228 (306)
.++++-+..+..|+...++.+...+......|..-..++.-+..|=.-++++
T Consensus 1580 ~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1580 GEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555544444433
No 199
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=51.95 E-value=59 Score=35.16 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=29.1
Q ss_pred cCCCchhhhhhh--hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhh
Q 021850 113 WKLPDMMFATRR--SLSDACNSVARQLEDVYSSISAAQRQLSSKITS 157 (306)
Q Consensus 113 ws~SDlMyVTKR--nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~ 157 (306)
|.++|.-|...+ ..-+|+..+..+++|+.+-+..+|.-|.+=.++
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~ 58 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREG 58 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555554 233455556668889999999999887765333
No 200
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=51.89 E-value=72 Score=27.53 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHHHHHHHHHhhhchh
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKITSVDR-------DVNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~-------kLDeq~eis~~ik~eV~~v~~dls 184 (306)
+.+..|++.+...+...|+++.+=-|+.|. ++||..+-...+...+..++.|++
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 467788888888998888888866665553 466665554444444444444444
No 201
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=51.85 E-value=1.6e+02 Score=27.41 Aligned_cols=72 Identities=10% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
+.+..-|.++...++++-..+++...=-..-...-..+..++..+..|++.....-..|+.++..+...=+|
T Consensus 64 d~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 64 DDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444444444455555555666677777777777888888777665444
No 202
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=51.67 E-value=76 Score=30.48 Aligned_cols=17 Identities=24% Similarity=0.318 Sum_probs=11.8
Q ss_pred CCCCCCCCchhhhhhhc
Q 021850 254 XXXXXXXIPMDLIRLTG 270 (306)
Q Consensus 254 ~~~~~~~~~~~~~~~~~ 270 (306)
...+.+..|.-.|+|-|
T Consensus 100 ~~~~~~~rpD~vI~LP~ 116 (304)
T PF02646_consen 100 DEDGNGLRPDFVIHLPG 116 (304)
T ss_pred cCCCCCcCceEEEEcCC
Confidence 44566777888888844
No 203
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.64 E-value=1.9e+02 Score=26.41 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
++++...|..++.|+-+..+-.+.++.+..+....+++...+++.+.+-+...|-+-.+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555555444444455555555556666555555554443
No 204
>PHA01750 hypothetical protein
Probab=51.17 E-value=28 Score=27.83 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=22.5
Q ss_pred hhhhhhhhHHHHHHHHh-hhhhhHHHHHHHHH
Q 021850 118 MMFATRRSLSDACNSVA-RQLEDVYSSISAAQ 148 (306)
Q Consensus 118 lMyVTKRnmsnAv~svt-KqLeqVs~sL~~tK 148 (306)
+-|--|.++.||+..+- +-|+++-..|+++|
T Consensus 24 lYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 24 LYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888999998754 45777777777776
No 205
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=51.15 E-value=63 Score=28.52 Aligned_cols=52 Identities=12% Similarity=0.255 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH----hhhchhhhhhHHHH
Q 021850 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI----LRGRSKLIGDEFQS 192 (306)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~----v~~dls~ig~Di~~ 192 (306)
+.|++++..+-+.|..-|+....++.+. .+.|++|+.. +++|++++......
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~---~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAA---GELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444444333 3334444333 34455544444433
No 206
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=51.04 E-value=13 Score=35.43 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcC-CCceEEEeCCCCCCCCceehh-hhhhhhheeeeEE-ecccC--CCchhhhhhhhHHHHHHHHhh
Q 021850 63 AEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (306)
Q Consensus 63 aQV~~LaqElr~L-sR~iTVvn~~~SgsGg~~~~~-ivviGavGYgYmw-WKGws--~SDlMyVTKRnmsnAv~svtK 135 (306)
+--++|+++|++. ...+.|+-+++-|+--+ .+. -+++|+.|.-++| |.|-+ |..-+.+|.++.+|-.++.+.
T Consensus 126 ~sA~~ir~~l~~~~g~~v~VIItDt~gr~~R-~G~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~T~~avaDelAaaA~ 202 (243)
T TIGR01916 126 ASAEKIRRGLRELTGVDVGVIITDTNGRPFR-EGQVGVAIGAAGLKVLRDWRGEKDLYGRELEVTEVAVADELAAAAN 202 (243)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCccc-cCCCCeeeeccCChHHHhcCCCcCCCCCeeeccHHHHHHHHHHHHH
Confidence 4467889999998 77888887773343111 222 3589999999998 77764 444578999988887766543
No 207
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.45 E-value=78 Score=24.86 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
|+.=...+-.|=..|..+|+.+-.+-+... ++-.+++....+...|-..++..+.+|=+||+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333333344444444444444333332 333333334455555666666666666666654
No 208
>COG5283 Phage-related tail protein [Function unknown]
Probab=50.24 E-value=1.5e+02 Score=34.54 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLs---qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
|-+++...++--....+.+..||+-|+ .|.+.+-+.|++++..-+..++|+.|+-+.+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444455555565554 58889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHh
Q 021850 203 KLIEIEGKQDITT 215 (306)
Q Consensus 203 Ki~~ie~kQd~tn 215 (306)
++.++...++.+-
T Consensus 107 ~~~sas~q~~~a~ 119 (1213)
T COG5283 107 KLRSLSGQFGVAS 119 (1213)
T ss_pred HHHHHHhhhchhh
Confidence 9999999888773
No 209
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=50.10 E-value=1.2e+02 Score=23.87 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 187 g~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
++|++..+.++..+..||+.+|.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999888865
No 210
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=49.98 E-value=1.3e+02 Score=30.31 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=51.6
Q ss_pred hhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHH
Q 021850 100 IVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK---IVEISQATQEEV 176 (306)
Q Consensus 100 iGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe---q~eis~~ik~eV 176 (306)
.+++|-|+ +---..+|=||.---++.||-..++.-=.+|++.....+.-+.+.+++|++-.++ ..++.+.+++.+
T Consensus 74 ~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PF04906_consen 74 CAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQA 151 (406)
T ss_pred HHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 45666543 3344567888888877878877777555566666556666666666666665533 334444455555
Q ss_pred HHhhhchhhhh
Q 021850 177 TILRGRSKLIG 187 (306)
Q Consensus 177 ~~v~~dls~ig 187 (306)
+.+-..++.|.
T Consensus 152 ~~v~~~l~~l~ 162 (406)
T PF04906_consen 152 ENVVQQLDELP 162 (406)
T ss_pred HHHHHHHhcCc
Confidence 55555554443
No 211
>PHA03395 p10 fibrous body protein; Provisional
Probab=49.29 E-value=51 Score=27.29 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=3.8
Q ss_pred hhhhhhhHH
Q 021850 155 ITSVDRDVN 163 (306)
Q Consensus 155 Id~vD~kLD 163 (306)
|..||.|+|
T Consensus 13 Ikavd~KVd 21 (87)
T PHA03395 13 IKAVSDKVD 21 (87)
T ss_pred HHHHhhHHH
Confidence 334444443
No 212
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.25 E-value=73 Score=26.76 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 021850 123 RRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sL~~tKkhLs 152 (306)
|+++-++++.+.+||.++++.|.+-|+++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666665555543
No 213
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.21 E-value=1.5e+02 Score=29.83 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhc-hhhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-SKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d-ls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
++-..+|.+..+++++. .+.++++++|+.... -..+ .+.+...+..+.+-+..||.++..++.+.+.
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777766 456778888866321 1123 4445555566666666666666666555443
No 214
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=49.03 E-value=74 Score=30.57 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
|..-..-+..+|+.+...|....+..++....|...+...
T Consensus 4 l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l 43 (304)
T PF02646_consen 4 LEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQL 43 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555444444444444444333
No 215
>PRK11519 tyrosine kinase; Provisional
Probab=48.91 E-value=3.1e+02 Score=29.42 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQL 151 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkhL 151 (306)
.++.+=+.+||+.+...|..+.+.|
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l 290 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKL 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554443
No 216
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=48.82 E-value=75 Score=32.55 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=28.2
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHH--HHHHHhhhhhhhhHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ--RQLSSKITSVDRDVNK 164 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tK--khLsqRId~vD~kLDe 164 (306)
++|.=+-||-||++- .-..+.=...+.+|++....+....+ +.+..+|.....+++.
T Consensus 43 aLgLGagg~~f~QqQ---------~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~ 101 (391)
T COG2959 43 ALGLGAGGYYFGQQQ---------NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDR 101 (391)
T ss_pred HHHhchhHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333456677754 22233334445555555555555555 5555555544444444
No 217
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=48.78 E-value=1.5e+02 Score=24.14 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhhc
Q 021850 217 GVKKLCDRARELEN 230 (306)
Q Consensus 217 GV~~LC~f~~~le~ 230 (306)
=|+.|=+|+..+|.
T Consensus 81 ~v~~LD~ysk~LE~ 94 (99)
T PF10046_consen 81 TVYELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555553
No 218
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.77 E-value=1.4e+02 Score=28.47 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=54.4
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~ 225 (306)
++.-++|.++.+|-....|.+.+.++..++..|..+.+--+..+-.+=.+|+..|..+...-+.+..|+..|-++.
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566789999999999999999998888877777665555555555556666666666666666666666665543
No 219
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=48.35 E-value=76 Score=31.05 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (306)
.++..+...|+++-....+.=.++++||.+-..+|+...+=+...+..|..+++
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667777777777777777777777777766665554444444444444444
No 220
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=48.30 E-value=46 Score=30.63 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=22.4
Q ss_pred ehhhhhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 021850 94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (306)
Q Consensus 94 ~~~ivviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId 156 (306)
|+-++++++|++-|+|=| ++-+.=.+-.++...++...=...+..-.+++++|++.+....+
T Consensus 36 yGWyil~~~I~ly~l~qk-l~~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaAR~RmQEE~d 97 (190)
T PF06936_consen 36 YGWYILFGCILLYLLWQK-LSPSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAARRRMQEELD 97 (190)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 555556677776555544 32222122233444444333344556677888888888766543
No 221
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.23 E-value=51 Score=28.64 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=37.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHH
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC 222 (306)
.++++.|..|+--.+.++-.|-+||..--.-+..+++|+++-.-...+==+++..+... .|+..+|
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 34455555555555556666666665555555556666655554444444455444333 6777777
No 222
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=48.02 E-value=6 Score=33.74 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
...+.-+..+...+..|..|+..++..++.
T Consensus 55 ~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 55 DDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333334444444455555555555555544
No 223
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.00 E-value=2.1e+02 Score=25.67 Aligned_cols=42 Identities=12% Similarity=0.337 Sum_probs=20.2
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHH---HHHHhhhhhhhhHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKI 165 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKk---hLsqRId~vD~kLDeq 165 (306)
..+.+-++.+-+++++....+...|. .|..+|+.+-.+.+..
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444433 4444555555554443
No 224
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=47.99 E-value=1.1e+02 Score=25.96 Aligned_cols=17 Identities=6% Similarity=0.337 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021850 59 NDLLAEVSSVQQELSHV 75 (306)
Q Consensus 59 ~~L~aQV~~LaqElr~L 75 (306)
+++..+++.+...++.|
T Consensus 29 ~~~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 29 EELEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33777888888888877
No 225
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=47.87 E-value=61 Score=33.14 Aligned_cols=53 Identities=6% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
=+.+||+.|+.+++...+..+...- ..+-.....+++.+...+..|..|+.-+
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~l 219 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGELEL-----NPDDPELKSDIEELERHISSLKERIEFL 219 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766665544444332 1122233444555555555555555533
No 226
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.85 E-value=1.5e+02 Score=24.04 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=46.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
++.+..|+.+..+.+...+=||.+++++=..+..++++.++.-+.|+..=..+...|..-..-+..|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777778888888877777777777777777777776666555544444444443
No 227
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.84 E-value=1.2e+02 Score=22.92 Aligned_cols=34 Identities=9% Similarity=0.262 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD 159 (306)
+-+-|..+...|+.+...+..-++--...+...+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~ 38 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456788888888888888887777777776666
No 228
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.79 E-value=3.7e+02 Score=28.60 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
|..|+..|+++++..
T Consensus 199 L~~ql~~l~~~l~~a 213 (754)
T TIGR01005 199 LAPEIADLSKQSRDA 213 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888887777665
No 229
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=47.74 E-value=1.3e+02 Score=23.37 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kL 162 (306)
++...+.....++.+....+|.++....+.+-.-|
T Consensus 21 ~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L 55 (127)
T smart00502 21 DALKQLISIIQEVEENAADVEAQIKAAFDELRNAL 55 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444443333
No 230
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=47.67 E-value=3.4e+02 Score=28.04 Aligned_cols=66 Identities=8% Similarity=0.184 Sum_probs=41.9
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHhhhchhh
Q 021850 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-VNKIVEISQATQEEVTILRGRSKL 185 (306)
Q Consensus 120 yVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~k-LDeq~eis~~ik~eV~~v~~dls~ 185 (306)
=.-|..|++-+..+-+.++.+.+.+...|+...+|==+...+ |+.+..-......++.+++.-+..
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999988874333322 333333333334445444444443
No 231
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=47.51 E-value=1.4e+02 Score=23.87 Aligned_cols=54 Identities=4% Similarity=0.129 Sum_probs=32.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021850 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (306)
Q Consensus 133 vtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i 186 (306)
+...|+.-++.|...-....+|++.+.....+-.++.+.++.++.-+...+..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~l 76 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSL 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666777777777776667666666665555444433
No 232
>PRK11032 hypothetical protein; Provisional
Probab=47.06 E-value=69 Score=28.88 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH----hhhchhhhhh
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI----LRGRSKLIGD 188 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~----v~~dls~ig~ 188 (306)
|++|.+.|......|..=|+.....+ .+..+.|++|+.. +++|++++..
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~---~~~~elT~dEl~lv~~ylkRDL~ef~~ 64 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRV---DAAGELTRDEVDLITRAVRRDLEEFAR 64 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666655444444444443 3444556666554 4556655544
No 233
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=47.04 E-value=1.1e+02 Score=22.35 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=20.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021850 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (306)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V 197 (306)
|++-..-+++..++..+|.+++..=++.+..+...+..+...+
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l 52 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNL 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555555555555444444444444444444333
No 234
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=46.32 E-value=33 Score=34.00 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=27.9
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHh
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn 215 (306)
.+.+.++.+.+..+...+......+..|+.+++.+|..-...|
T Consensus 150 Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 150 EERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3445555555566666667777777788888888887544433
No 235
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=46.20 E-value=1.5e+02 Score=31.65 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=72.4
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
.-|...|.+-...|.++..--...|.-|...+..+..+.+....=++.-.+++..++..+..+-.++..=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888889999888899999999999999888777766666677888888888888888888888888888888
Q ss_pred HHHHhhh
Q 021850 204 LIEIEGK 210 (306)
Q Consensus 204 i~~ie~k 210 (306)
+.++...
T Consensus 477 ~e~~~k~ 483 (594)
T PF05667_consen 477 LEKLPKD 483 (594)
T ss_pred HHhCCCC
Confidence 8877655
No 236
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.79 E-value=1.5e+02 Score=26.58 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=47.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh-HHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT-LESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~-Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
++...|+.++.+|.....+...+-+.-.++..|...++.-+..+-..-.+ |+..+..+...-+....+...|-+
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~ 82 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNK 82 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777777777777777766666666 666666555444444444444433
No 237
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.78 E-value=1.6e+02 Score=27.48 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=22.7
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 178 ILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 178 ~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
....++..|.+||+.|.+-|.+||.=|.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999987664
No 238
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.76 E-value=1.9e+02 Score=24.58 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
--++.+.|+.|-.=| +-.+.=...+..|..++-+++..++....-.+..++++.+....+.....+...+...+..++.
T Consensus 30 ~~~~~~vin~i~~Ll-~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 30 EDNDVRVINCIYDLL-QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333 2223344556667777777777777777767777777777777776666666666666666666
Q ss_pred HHHHH
Q 021850 203 KLIEI 207 (306)
Q Consensus 203 Ki~~i 207 (306)
++...
T Consensus 109 ~~k~~ 113 (151)
T PF11559_consen 109 KLKQE 113 (151)
T ss_pred HHHHH
Confidence 66543
No 239
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=45.71 E-value=7.8 Score=40.15 Aligned_cols=18 Identities=56% Similarity=0.916 Sum_probs=15.2
Q ss_pred eEEEecCccceeee----cCCC
Q 021850 9 TFLVGAGILTSVLA----KEGR 26 (306)
Q Consensus 9 ~ILvGAG~~GSVl~----knGk 26 (306)
+|+||||++||-|+ |+||
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGR 69 (509)
T KOG1298|consen 48 VIIVGAGVAGSALAYALAKDGR 69 (509)
T ss_pred EEEECCcchHHHHHHHHhhCCc
Confidence 79999999998654 7887
No 240
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=45.65 E-value=1.9e+02 Score=24.46 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhH
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kL 162 (306)
.+...+++..|..+...|+...++|..-+-.=-..|
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~L 60 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDL 60 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 444556667777777777766666666554433333
No 241
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.59 E-value=1.1e+02 Score=35.74 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.-...+....+|+++.|..+.+++++-..-...+.+.....+..+.+...++.++......++.+++.+..
T Consensus 398 ~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~ 468 (1293)
T KOG0996|consen 398 REDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILD 468 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666655544444444444444444444444444444444444444444433
No 242
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=45.52 E-value=1.9e+02 Score=27.52 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021850 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (306)
|-.+|.++|+.|...+.+|..++..|.+.|-+++.
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv 39 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQV 39 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999998877664
No 243
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.45 E-value=1.1e+02 Score=27.39 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=44.9
Q ss_pred hhhhhHHHHHHHHHHH--HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 135 RQLEDVYSSISAAQRQ--LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 135 KqLeqVs~sL~~tKkh--LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
..=+.+++.|....+| +..||+.|....+...+-++.|..++.+++.+|..+- ..-+.|+..+...+.
T Consensus 9 ~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~----------~~~~~~~~~~~~~~~ 78 (188)
T PF10018_consen 9 EADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP----------DQADEKLKSIPKAEK 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhcccccccccc
Confidence 3334444555444444 4567777777666666666666666666555554332 112223333332222
Q ss_pred hHhHHHHHHHHHHHhhhcCC
Q 021850 213 ITTLGVKKLCDRARELENGR 232 (306)
Q Consensus 213 ~tn~GV~~LC~f~~~le~~~ 232 (306)
..- -+.-|..|++.+-...
T Consensus 79 ~~v-~~~eLL~YA~rISk~t 97 (188)
T PF10018_consen 79 RPV-DYEELLSYAHRISKFT 97 (188)
T ss_pred CCC-CHHHHHHHHHHHHHhc
Confidence 222 2677888888664433
No 244
>PRK10869 recombination and repair protein; Provisional
Probab=45.40 E-value=1.4e+02 Score=31.16 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=51.2
Q ss_pred CCCchhhhhhhhHHHH------HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021850 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (306)
Q Consensus 114 s~SDlMyVTKRnmsnA------v~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (306)
+.-|.+.-..+.|+.. ...+...|++++..|..+...|..-.+.++-.=++..++ .+-+..++.=-...|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~i----e~Rl~~l~~L~rKyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAEL----EQRLSKQISLARKHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH----HHHHHHHHHHHHHhC
Confidence 3455666666766443 455777888888888888888888777665433333222 333333333333345
Q ss_pred hHHHHHHHHHHhHHHHHHHH
Q 021850 188 DEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~i 207 (306)
.+++.|-..-..++.+++.+
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 245
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.29 E-value=96 Score=30.17 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLs---qRId~vD~kLDeq~eis~~ik~eV~~v~~dl 183 (306)
+.++++.....|+...+.|...+.+|. .+|+.+..+.++...=...+++++...+..+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556666666777776666666555433 3444444444444333344444444333333
No 246
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.25 E-value=1.3e+02 Score=32.65 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhHHHHHHHHHHhHH
Q 021850 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDEFQSVRDIVQTLE 201 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~---ig~Di~~v~~~V~~Le 201 (306)
+.+..-..+..+=+.|.-.+..|+..+++++......++++..++..+.. ++.++...+..+..|+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~ 487 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLE 487 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444455666666777777777777777777777777776666555432 3444444444444433
No 247
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.21 E-value=99 Score=29.21 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (306)
.+|+..+...++......-+++.++..++.++.+++++++..+ ..|+.+...|.---.-+..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~-------~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ-------YQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4777777777777666666777777777777766666666666 5555555555443333333
No 248
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.98 E-value=2.9e+02 Score=31.57 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=68.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
-+.+++-|-|.-+-+...+++|.--=+.....+.+..+..+-...++.++......|+.++..-+..+++++.|+.++|.
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 34556666666666655555555444444444444555555566777777778888899999999999999999999999
Q ss_pred hhhhHhHHHHHHHHHHH
Q 021850 210 KQDITTLGVKKLCDRAR 226 (306)
Q Consensus 210 kQd~tn~GV~~LC~f~~ 226 (306)
+-|.+.+-|..|-+--+
T Consensus 359 krd~al~dvr~i~e~k~ 375 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQEKKE 375 (1265)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 99999888887765433
No 249
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.71 E-value=2e+02 Score=24.60 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~ 174 (306)
..|++++..+++..+.+++.....-++. ...+-+-|++.......+++
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k~ 107 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVKE 107 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Confidence 4688888888888888887776554444 33444555555554444443
No 250
>PRK13694 hypothetical protein; Provisional
Probab=44.60 E-value=1.1e+02 Score=25.19 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 021850 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~ 199 (306)
.-|.+-.||++|+. |-++|+..|++--.++++ -|+|++.++++|.-
T Consensus 13 ~Lr~fIERIERLEe---Ekk~i~~dikdVyaEAK~----~GfD~K~~r~ii~l 58 (83)
T PRK13694 13 QLRAFIERIERLEE---EKKTISDDIKDVYAEAKG----NGFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHH
Confidence 34455566666664 456666666666655554 59999999988853
No 251
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.55 E-value=1e+02 Score=30.40 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
+..||..|.++|..|
T Consensus 130 l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 130 LAQQLEELSKQLDSL 144 (388)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666777777666666
No 252
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.48 E-value=2.5e+02 Score=27.46 Aligned_cols=74 Identities=8% Similarity=0.182 Sum_probs=41.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 134 tKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
+.+++.....+...-+++.++-+.+++-+++....+..+.+-+.+.+..+-..-.+++.+..+...-...+..+
T Consensus 217 ~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~l 290 (359)
T COG1463 217 SDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQL 290 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444455555555666666666666666666666666666666666655444444444444444333333333
No 253
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.42 E-value=2.1e+02 Score=27.83 Aligned_cols=77 Identities=12% Similarity=0.234 Sum_probs=48.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
..++.++..=-.+|+.|..--..=..|-..+...+ ++.++-+.+++-+..++..++++...+.++..-...||.||.
T Consensus 124 ~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~-e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIe 200 (267)
T PF10234_consen 124 QLASEITQRGASLYDLLGKEVELREERQRALARPL-ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIE 200 (267)
T ss_pred HHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555433322223333333333 456688888888888888888888888888888888888886
No 254
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.32 E-value=49 Score=27.09 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=13.0
Q ss_pred hhhhhhhHHHHHHHHhhhhhhH
Q 021850 119 MFATRRSLSDACNSVARQLEDV 140 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqV 140 (306)
|||- +...+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6665 55666666666655554
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=44.30 E-value=64 Score=28.51 Aligned_cols=57 Identities=5% Similarity=0.085 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
-+..++++-..+++.||.+|.+-+ ...++++|-....++.++-..+..+..+++..+
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~ 60 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYS 60 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 367788888899999999987755 667777787777777777777777777666555
No 256
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=44.03 E-value=1e+02 Score=29.00 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=42.8
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHHHH
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRD 195 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~-ik~eV~~v~~dls~ig~Di~~v~~ 195 (306)
|-|-.+||.|+++...+++.|..+++.=. .-|+.-+..|.+..+...++-.. -.+|...+.+.+...-.++++++.
T Consensus 48 ~~lv~~rkela~~~~~fs~al~~L~~~E~---t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~ 124 (219)
T cd07621 48 DKMTRKHKDVADSYIKISAALTQLATSEP---TPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKD 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888888887776532 13333333333333333222222 234566666666666666666654
Q ss_pred H
Q 021850 196 I 196 (306)
Q Consensus 196 ~ 196 (306)
+
T Consensus 125 ~ 125 (219)
T cd07621 125 L 125 (219)
T ss_pred H
Confidence 3
No 257
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.81 E-value=2.7e+02 Score=28.45 Aligned_cols=68 Identities=4% Similarity=0.084 Sum_probs=30.4
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (306)
+||++-+.-|.+.-+-. ..|..-+|.|..-++||..-+++|+-.+-..++-+.-.+..+.|..+|.++
T Consensus 218 klR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34444444444333222 234444444444445554444555544444444444444555554444443
No 258
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.78 E-value=3.2e+02 Score=26.73 Aligned_cols=15 Identities=7% Similarity=0.536 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
|..|+..+++++...
T Consensus 176 l~~ql~~~~~~l~~a 190 (444)
T TIGR03017 176 FVQQIAALREDLARA 190 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777765
No 259
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=43.61 E-value=2.4e+02 Score=32.17 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=67.0
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHH---------HHHHHHH----HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021850 119 MFATRRSLSDACNSVARQLEDVY---------SSISAAQ----RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs---------~sL~~tK----khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (306)
-|.+.+...+=+.++.+||+.|+ .+.+..| ..|..+||.++... .++..+|..+...+.+
T Consensus 734 ~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~-------~el~a~v~~~~~qi~~ 806 (984)
T COG4717 734 EEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEV-------EELHAQVAALSRQIAQ 806 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 35678888888888888888642 1222222 11112222222222 2222222222222222
Q ss_pred --hhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhhhcCCCccccccCCC
Q 021850 186 --IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQSGSL 242 (306)
Q Consensus 186 --ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~le~~~~~~~~Q~~s~ 242 (306)
-|+-+..+++.-+.|=.+|.++--+=-..-.++..|-+.++..+..+.|..+|..+.
T Consensus 807 lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~A~~ 865 (984)
T COG4717 807 LEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQEASE 865 (984)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 234455566666666667776666666777788888888888888888888875443
No 260
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=43.59 E-value=1.1e+02 Score=24.84 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=9.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH
Q 021850 129 ACNSVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 129 Av~svtKqLeqVs~sL~~tKkhLsq 153 (306)
.++.+-+....|-+.|..+...|+.
T Consensus 48 ~~~~~~~~~~~vi~~L~~a~~~l~~ 72 (113)
T PF02520_consen 48 QKEEVRKNVTAVISNLSSAFAKLSA 72 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 261
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.43 E-value=2.2e+02 Score=29.78 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=55.2
Q ss_pred hHHHHHHHHhhhhhhHHHHHH----------------------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH------
Q 021850 125 SLSDACNSVARQLEDVYSSIS----------------------AAQRQLSSKITSVDRDVNKIVEISQATQEEV------ 176 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~----------------------~tKkhLsqRId~vD~kLDeq~eis~~ik~eV------ 176 (306)
++-+|.+.+.+|+|.+.+.+. .+|+-++.+|++.+.+++....+--+|.+-.
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl 316 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVL 316 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 566778888888888877765 4566677788999988888887777766432
Q ss_pred -------HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 177 -------TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 177 -------~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
..++.-+.+ +.-.+.|++.+..+..-+++=++
T Consensus 317 ~AyksGs~alK~il~~-~~s~ekVed~Ldev~et~d~~~E 355 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQ-GGSTEKVEDVLDEVNETLDRQEE 355 (439)
T ss_pred HHHHHhHHHHHHHHhc-cCChhhHHHHHHHHHHHHhhHHH
Confidence 222222333 34445677777777666664444
No 262
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=43.39 E-value=1.7e+02 Score=31.02 Aligned_cols=82 Identities=15% Similarity=0.342 Sum_probs=57.3
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~L 200 (306)
+.|..+-..-..++.++.+.++.|..-++.+...|...-+++....+=...+.+++..+ ...|.+...+.+-=..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 67777888888999999999999999998888888777666655555555555555555 44555555555555555
Q ss_pred HHHHHH
Q 021850 201 ESKLIE 206 (306)
Q Consensus 201 e~Ki~~ 206 (306)
..+|..
T Consensus 207 v~eLs~ 212 (552)
T COG1256 207 VDELSQ 212 (552)
T ss_pred HHHHHh
Confidence 555553
No 263
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.15 E-value=1.5e+02 Score=31.76 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=68.8
Q ss_pred CCCchhhhhhhhHHHHH------HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHhhhchh
Q 021850 114 KLPDMMFATRRSLSDAC------NSVARQLEDVYSSISAAQRQLSSKITSVDRD---VNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 114 s~SDlMyVTKRnmsnAv------~svtKqLeqVs~sL~~tKkhLsqRId~vD~k---LDeq~eis~~ik~eV~~v~~dls 184 (306)
+..|.+|-..+.|++.+ ..+.+.|+..+..|..+..+|..-++.++-. |++..+=...++.=--+-+.+++
T Consensus 242 ~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~ 321 (557)
T COG0497 242 SALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321 (557)
T ss_pred hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45677888888886544 4677788888888888888888888877764 55554444444433333444444
Q ss_pred hhhhHHHHHHHHHHhHH---HHHHHHhhhhhhHhHHHHHHHHHHH
Q 021850 185 LIGDEFQSVRDIVQTLE---SKLIEIEGKQDITTLGVKKLCDRAR 226 (306)
Q Consensus 185 ~ig~Di~~v~~~V~~Le---~Ki~~ie~kQd~tn~GV~~LC~f~~ 226 (306)
.+-.-.+.++.-...|+ .++..+|..-+..-.-....|+-..
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443 4455666666666666666666554
No 264
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=43.11 E-value=66 Score=24.49 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=14.6
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLs 152 (306)
+|+.+.+ .+-...+....+.+.+.+.....+..
T Consensus 18 L~aP~sG-~e~R~~l~~~~~~~~~~~~~~~~~~~ 50 (74)
T PF12732_consen 18 LFAPKSG-KETREKLKDKAEDLKDKAKDLYEEAK 50 (74)
T ss_pred HhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455433 34444444444444444444444433
No 265
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=42.96 E-value=2.8e+02 Score=29.68 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=17.1
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (306)
Q Consensus 176 V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t 214 (306)
...++..+.....-+++-++-+..|..-+..+-..+|.|
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt 323 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRT 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 266
>COG1511 Predicted membrane protein [Function unknown]
Probab=42.85 E-value=2.6e+02 Score=30.52 Aligned_cols=105 Identities=12% Similarity=0.241 Sum_probs=51.5
Q ss_pred hhHHHHHHHHhhhhhhHHHHH-H-HHHHH-------HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSI-S-AAQRQ-------LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL-~-~tKkh-------LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
+.++++.+.+++++...+... . .+=+. ....+..+.+-+++.....+.+.+..+.+......+.+++..+.
T Consensus 147 ~~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 226 (780)
T COG1511 147 KAADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALT 226 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHHHh
Confidence 445666666666666655554 1 22222 22334444444444444444444444444444444445555555
Q ss_pred HHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhh
Q 021850 195 DIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (306)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~l 228 (306)
.-+..+...+..+....+.-+.|+..|-+.++.+
T Consensus 227 ~~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~~~i 260 (780)
T COG1511 227 SGLTTLTDGLNQLDSGLGTLAAGIGELKQGAEQL 260 (780)
T ss_pred hhhHHHhhhHHHHHhhhhHHhhhhHHHHHHHHHH
Confidence 5555555555555554444444555554444444
No 267
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=42.85 E-value=2.7e+02 Score=25.48 Aligned_cols=68 Identities=7% Similarity=0.156 Sum_probs=50.6
Q ss_pred ecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021850 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (306)
Q Consensus 110 WKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (306)
+.+|+.+. ..|.+|...++..+|..+.++..+-.. .++.-+-|.+....+..++.=+ . ++++.+...+
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vl-k-~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVC-K-KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHH
Confidence 46788888 699999999999999998888876544 3667777888888888887733 3 5555554444
No 268
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=42.44 E-value=70 Score=24.90 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021850 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (306)
+..+|..+++.++..++.+..-.+.+.+++.+++.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 269
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.41 E-value=1.5e+02 Score=34.58 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH-HHHhHHHHHHHHhhhhhhHhHHHHHHH
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD-IVQTLESKLIEIEGKQDITTLGVKKLC 222 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~-~V~~Le~Ki~~ie~kQd~tn~GV~~LC 222 (306)
|....+++..+...+++.+.++.+....++++...++.+++.|..-...++. .+. ++.|+..+...=+.-..-+.+.-
T Consensus 961 L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~~ 1039 (1293)
T KOG0996|consen 961 LTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQPE 1039 (1293)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhHH
Confidence 3344456666666677777888888888888888888888887777777776 555 77777766665555555555554
Q ss_pred HHHHhhhcCCCcccc
Q 021850 223 DRARELENGRPTELV 237 (306)
Q Consensus 223 ~f~~~le~~~~~~~~ 237 (306)
.....+.-..+++..
T Consensus 1040 k~~~~l~~~~~tE~~ 1054 (1293)
T KOG0996|consen 1040 KELKKLSLCNMTETR 1054 (1293)
T ss_pred HhhCccccccchhhc
Confidence 333333333343333
No 270
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=42.33 E-value=2.2e+02 Score=24.29 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 160 ~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
....+...-++.|..|.-.++..+..+...-...-..+..+..+|.+|..=|+
T Consensus 40 ~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveN 92 (121)
T PF06320_consen 40 SRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVEN 92 (121)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 33334444455555555555555555555555555555555555555544444
No 271
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.23 E-value=1.1e+02 Score=28.61 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHH-------HHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 145 SAAQRQLSSKITSVDRDVNKIV-------EISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~-------eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
++---.|.-|||+++..+|+.. |-.-.++.+|+.++.|+.....-++.+
T Consensus 78 A~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 78 ASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333456667777777766633 333456666776666665555444433
No 272
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=42.02 E-value=3.3e+02 Score=29.03 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----------H------HHHHHhhhchhhh
Q 021850 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT----------Q------EEVTILRGRSKLI 186 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~i----------k------~eV~~v~~dls~i 186 (306)
+|-.-.-+..+-+-|+.+++.+.. ......+|.++|+.+|...+-.+.- + .++-+.-.|+++|
T Consensus 337 ~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~I 415 (533)
T COG1283 337 AREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHI 415 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHH
Confidence 444445566666777788888877 7777778888888877655433211 1 1233445556666
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHH
Q 021850 187 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (306)
Q Consensus 187 g~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~ 226 (306)
|+-++. ++.-.+. .++.+-.++-.|..-||++..
T Consensus 416 gDiie~---l~~~~~k---k~~~~~~fse~~~~el~~l~~ 449 (533)
T COG1283 416 GDIIER---LLELADK---KIANGRAFSEDGLEELDALFA 449 (533)
T ss_pred HHHHHH---HHHHHHH---HHhcCCCCCHHHHHHHHHHHH
Confidence 655554 2222333 345677788888888887654
No 273
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=42.02 E-value=94 Score=25.49 Aligned_cols=47 Identities=11% Similarity=0.187 Sum_probs=36.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~ 180 (306)
++.|-.+|+++.. +-.||.+|-|+|-.+|.+..+-.++|+.+..+-.
T Consensus 28 ~~~ins~LD~Lns----~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 28 YAAINSMLDQLNS----CLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677766554 5578999999999999999998898888875543
No 274
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=41.93 E-value=2.6e+02 Score=25.09 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021850 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (306)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (306)
+...|..=++++..-|+.-+..-++..++-+..++++.+.+....+|+.|
T Consensus 35 I~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566666666666666666666666666665
No 275
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.82 E-value=1.7e+02 Score=29.92 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-----------HHHHHHhhhchhhhhhHHHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-----------QEEVTILRGRSKLIGDEFQSVRDI 196 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~i-----------k~eV~~v~~dls~ig~Di~~v~~~ 196 (306)
.+...--+.|++--..+...+.++..+++.++.++.-...+.... ...+.++..-+..++..+..++..
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555566666777777777665555554322 113455566666667777777777
Q ss_pred HHhHHHHHHHHhhhhhhHhH
Q 021850 197 VQTLESKLIEIEGKQDITTL 216 (306)
Q Consensus 197 V~~Le~Ki~~ie~kQd~tn~ 216 (306)
...++.++..++.+......
T Consensus 147 ~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 147 DREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666554433
No 276
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=41.81 E-value=3.1e+02 Score=26.05 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-HHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ-EEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik-~eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
=|.++++.|-||+.++-..+++ .+.+..+|-+|=|+......... +|-..++..+..+.+++..|++-- ...
T Consensus 15 ~i~~~i~~vEkhFg~lC~~~a~----ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYR---qa~ 87 (219)
T PF06730_consen 15 FIQDRITNVEKHFGELCQLFAA----YTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYR---QAE 87 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHH---HHH
Confidence 3778888888888888888876 34556677777765544443333 344566778888888888776432 133
Q ss_pred HHHHhhhhhhHhHHHHHHHHHHH
Q 021850 204 LIEIEGKQDITTLGVKKLCDRAR 226 (306)
Q Consensus 204 i~~ie~kQd~tn~GV~~LC~f~~ 226 (306)
++++|.|---....-...|..+.
T Consensus 88 v~RlE~KVv~pL~~Y~~~cK~~r 110 (219)
T PF06730_consen 88 VERLEAKVVEPLSQYGTICKHAR 110 (219)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444444444446776655
No 277
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.58 E-value=2.2e+02 Score=24.24 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhhhHHHHHH-----HHHHHHHHhhhhhhhhHHHHHHHHHH
Q 021850 127 SDACNSVARQLEDVYSSIS-----AAQRQLSSKITSVDRDVNKIVEISQA 171 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~-----~tKkhLsqRId~vD~kLDeq~eis~~ 171 (306)
++.+.++-..|-++.-.++ ..+..|.++|+.+...|++..++...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555555555555554 56889999999999999998888877
No 278
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.51 E-value=1.9e+02 Score=26.03 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~ 192 (306)
++...|+.++.+|.....+...+-+.-.++..++..+|.-+..
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ 60 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQL 60 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777776666666655544444
No 279
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.28 E-value=3.1e+02 Score=25.87 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 162 LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
|.|...-......|=...-+.|-+|..|+..+..++...+.--..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444555555555555555555443333
No 280
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=41.17 E-value=1.8e+02 Score=23.14 Aligned_cols=10 Identities=0% Similarity=0.089 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 021850 164 KIVEISQATQ 173 (306)
Q Consensus 164 eq~eis~~ik 173 (306)
+..++...++
T Consensus 36 e~~~~~~eL~ 45 (97)
T PF09177_consen 36 ELKWLKRELR 45 (97)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 281
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.17 E-value=1.7e+02 Score=22.82 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=36.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 158 vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
+..+|.+-.+.+.+..+|-..+...--....-|..++..+..+|..+..+..+.+-...-+..|-+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666655555555555556666666666665555555444444444444433
No 282
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=41.06 E-value=21 Score=28.46 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=31.6
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe 164 (306)
=|.||+..+. .++.+-++--+.|...=++|.+||+.|..=||+
T Consensus 25 HY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 25 HYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4788877764 355566666677777788899999998877664
No 283
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.94 E-value=81 Score=29.99 Aligned_cols=45 Identities=11% Similarity=0.283 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021850 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (306)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d 182 (306)
..+=.-|.+.|.++.+|...|+..+.++.......+.||..++.|
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999998888777777777666654
No 284
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.75 E-value=2.9e+02 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHH
Q 021850 123 RRSLSDACNSVARQLEDVYSSISAAQ 148 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sL~~tK 148 (306)
++.|.+--......++++-..|..++
T Consensus 80 ~k~lE~r~~~~eeri~~lE~~l~ea~ 105 (237)
T PF00261_consen 80 RKVLENREQSDEERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 285
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.67 E-value=3.5e+02 Score=26.33 Aligned_cols=81 Identities=12% Similarity=0.228 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
+.+....+.+.+.+..+...-++..+-.+..+++..++...-.+.-.+...++ -.+.+++...+..+.=+.+.
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~-------~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQ-------LELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666555554444555555444444444444444444 44444444444444444444
Q ss_pred HHHHHhhh
Q 021850 222 CDRARELE 229 (306)
Q Consensus 222 C~f~~~le 229 (306)
.+....++
T Consensus 126 ~~~L~~L~ 133 (314)
T PF04111_consen 126 SNQLDRLR 133 (314)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 44444443
No 286
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.42 E-value=3.6e+02 Score=26.37 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=3.7
Q ss_pred HHHhhhcCC
Q 021850 224 RARELENGR 232 (306)
Q Consensus 224 f~~~le~~~ 232 (306)
+....+..+
T Consensus 361 ll~r~~e~~ 369 (444)
T TIGR03017 361 AMQRYTQTR 369 (444)
T ss_pred HHHHHHHHH
Confidence 344444433
No 287
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.35 E-value=2.7e+02 Score=27.87 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=9.2
Q ss_pred cCccceeeecCCC
Q 021850 14 AGILTSVLAKEGR 26 (306)
Q Consensus 14 AG~~GSVl~knGk 26 (306)
+|++..|++++|.
T Consensus 67 ~G~v~~i~V~eG~ 79 (457)
T TIGR01000 67 NNAIKENYLKENK 79 (457)
T ss_pred CcEEEEEEcCCCC
Confidence 3677777777775
No 288
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.27 E-value=1.4e+02 Score=28.00 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=41.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhch--hhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRS--KLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl--s~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.|...|.++..|+...+.....+..|+.++...+ +++...+++++..|.+.+.||..+-+
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655566666666666543 46888888888888888888887654
No 289
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=40.24 E-value=88 Score=30.99 Aligned_cols=52 Identities=21% Similarity=0.541 Sum_probs=26.4
Q ss_pred ceehhhhhhhhheeeeE-----EecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 021850 92 KKYGVIVVIVAVGYGYV-----WWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAA 147 (306)
Q Consensus 92 ~~~~~ivviGavGYgYm-----wWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~t 147 (306)
+.+|++.++.-+|||-+ .|+.-.- |-..+.+++.......++++.-+.+...
T Consensus 166 ~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 166 NFWGLFLFIILLGYGLVAIPRDLWRSSNS----YFRAAKLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhccc----cchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 35666667778888864 2553321 3333444444444444444444444333
No 290
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=40.20 E-value=46 Score=29.47 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHH---HHHHHhhhhhhhhH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDV 162 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tK---khLsqRId~vD~kL 162 (306)
.-.++..+|.+.+-|..+.+..++.... .+|++|++.+...+
T Consensus 87 ~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 87 YAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred eeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999888776655433 34445555444444
No 291
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=40.16 E-value=4e+02 Score=26.79 Aligned_cols=25 Identities=4% Similarity=0.276 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSIS 145 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~ 145 (306)
.-=..|++-.+++|+|-|+=..++.
T Consensus 203 ~le~ema~lL~sLt~HfDqC~~a~~ 227 (412)
T PF04108_consen 203 SLEQEMASLLESLTNHFDQCVTAVR 227 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3337788888888888887777766
No 292
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=40.15 E-value=1.6e+02 Score=26.80 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=41.2
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI-SQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ei-s~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
|.|.+=--|+.++++-+.+- -|+.=+.-|...=..+++.+.-+-.+..++-++ .+.+.++|.+++.-+++...|+..+
T Consensus 63 ~~~~~~g~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 63 VKIEIEGQKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred ccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 34444444555555555442 234444444444445555555555555555555 5556666666666666666655544
Q ss_pred H
Q 021850 194 R 194 (306)
Q Consensus 194 ~ 194 (306)
-
T Consensus 142 ~ 142 (157)
T COG3352 142 Y 142 (157)
T ss_pred c
Confidence 3
No 293
>PRK01919 tatB sec-independent translocase; Provisional
Probab=40.02 E-value=2.1e+02 Score=26.25 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRI 155 (306)
..|-.+...+++-+..+-..+...|.++..-+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888888877654
No 294
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.00 E-value=2.8e+02 Score=29.28 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl 183 (306)
+.-.+-++.+..++.....++.-+++++...+.+..|+.+..+++-..-+..+
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444455555555566666666666666666666666655555443333333
No 295
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=39.76 E-value=7.7 Score=31.07 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=39.4
Q ss_pred eeeEEEecCccceeeecCCCccchhHHhHhHHHHHHHhhhcCCCCCCCCchhHH--HHHHHHHHHHHHhcC----CCceE
Q 021850 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND--LLAEVSSVQQELSHV----PRSVI 80 (306)
Q Consensus 7 Kv~ILvGAG~~GSVl~knGkLsD~~~~lsg~lk~v~k~~k~~d~~~~~s~~~~~--L~aQV~~LaqElr~L----sR~iT 80 (306)
||+++.|+|++.|++++ ++-+++.+..=-..+-.-...+.+ .....+|- ++-|++..-.+++.. .-||.
T Consensus 1 kIl~~Cg~G~sTS~~~~--ki~~~~~~~~~~~~v~~~~~~~~~---~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~ 75 (96)
T cd05564 1 KILLVCSAGMSTSILVK--KMKKAAEKRGIDAEIEAVPESELE---EYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVA 75 (96)
T ss_pred CEEEEcCCCchHHHHHH--HHHHHHHHCCCceEEEEecHHHHH---HhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEE
Confidence 78999999999998766 565555421000000000000000 00112233 566999999999974 44666
Q ss_pred EEeC
Q 021850 81 IETS 84 (306)
Q Consensus 81 Vvn~ 84 (306)
++..
T Consensus 76 ~I~~ 79 (96)
T cd05564 76 VIDM 79 (96)
T ss_pred EcCh
Confidence 6554
No 296
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=39.73 E-value=2.9e+02 Score=25.17 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 188 DEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
.|..+-...++-+|.|+..+|..-+
T Consensus 159 ~~~~~a~~~fer~e~ki~~~ea~ae 183 (219)
T TIGR02977 159 GRSDEAMARFEQYERRVDELEAQAE 183 (219)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666665443
No 297
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.72 E-value=79 Score=35.55 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=43.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021850 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V 197 (306)
.=-|||++=-++|..-+..|++||+.+.+++-.+++..+.+.....-....+++....|+..+.+.
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888889998888888877766666555544444444444444444444443
No 298
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=39.66 E-value=3.7e+02 Score=27.99 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=31.8
Q ss_pred HHHHhhhhhhhhHHHH--HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 150 QLSSKITSVDRDVNKI--VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 150 hLsqRId~vD~kLDeq--~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
+|..|.+.+.+.+++. .++...++.++.+.-.++..+..++......+..|+
T Consensus 50 ~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 50 DLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666333 224556666666666777777777776666666555
No 299
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=39.59 E-value=1.2e+02 Score=29.28 Aligned_cols=93 Identities=12% Similarity=0.221 Sum_probs=68.5
Q ss_pred ehhhhhhhhheeeeEEecc-----cCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHh---hhhhhhhHHHH
Q 021850 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (306)
Q Consensus 94 ~~~ivviGavGYgYmwWKG-----ws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqR---Id~vD~kLDeq 165 (306)
.|+++++|++-+||++=.| |.+|-+|-|-=-.+ ++.-++.-+..+..++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtl--ga~lis~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l 82 (282)
T TIGR03818 5 IGLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAI--GAFIIANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSLL 82 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4567788888888887444 66677777765444 34457778889999999999988776 44667778888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 021850 166 VEISQATQEE-VTILRGRSKLIGD 188 (306)
Q Consensus 166 ~eis~~ik~e-V~~v~~dls~ig~ 188 (306)
.+++...|.+ +-.+..+++++.+
T Consensus 83 ~~la~~aR~~GllaLE~~v~~~~~ 106 (282)
T TIGR03818 83 YELLRKARREGLMAIESHIENPEE 106 (282)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8999988877 6667766766664
No 300
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=39.47 E-value=9.8 Score=32.45 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=0.0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t 214 (306)
.+++.+..++++..+-.+.+..+|.+...++.++...+..+...|..|+..+..+..++..-
T Consensus 17 ~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l 78 (138)
T PF06009_consen 17 DRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPL 78 (138)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666667777777777777777777778888888887777777766543
No 301
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=39.31 E-value=3.4e+02 Score=27.85 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHHHhhhchhh-------hhhHHHHHHHHHHhHHHHHH
Q 021850 142 SSISAAQRQLSSKITSVDRDV-NKIVEISQATQEEVTILRGRSKL-------IGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~kL-Deq~eis~~ik~eV~~v~~dls~-------ig~Di~~v~~~V~~Le~Ki~ 205 (306)
..+......|...|++|..++ -+...+.+..++|=.....=-++ -..+|..+++-+..+|.||+
T Consensus 222 ~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445555666666666543 24555666666553333222222 23455555555555555555
No 302
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.27 E-value=1.5e+02 Score=27.17 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=46.0
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH-HHHHHHHHHhhhchhhhhhHHHHHHH
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQSVRD 195 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis-~~ik~eV~~v~~dls~ig~Di~~v~~ 195 (306)
|-|--+|+.|++|+..+++.|..+++.=..+-+-|+.=+..+.+-.+...++. .+-.++...+...+...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999887765432221122222222222222222221 22346677777777777777777776
Q ss_pred HH
Q 021850 196 IV 197 (306)
Q Consensus 196 ~V 197 (306)
+.
T Consensus 108 ~l 109 (198)
T cd07630 108 ML 109 (198)
T ss_pred HH
Confidence 54
No 303
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.19 E-value=4.1e+02 Score=30.59 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=9.8
Q ss_pred HHhhhhhhhhHHHHHHHHHHHH
Q 021850 152 SSKITSVDRDVNKIVEISQATQ 173 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik 173 (306)
..+++.+...+++...+.+.|+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 940 QDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 304
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=39.09 E-value=66 Score=31.77 Aligned_cols=109 Identities=15% Similarity=0.263 Sum_probs=56.5
Q ss_pred hhhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhh-hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 021850 97 IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (306)
Q Consensus 97 ivviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLe-qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~e 175 (306)
++++|+.||.|.++-...+. .+-..++.-.+....+++ +....+....+....++..+..++.....=...+++.
T Consensus 40 ~~alg~~~~~~~~~q~~~~~----~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~ 115 (372)
T PF04375_consen 40 ALALGAGGWYWQQQQLQQLQ----QQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQ 115 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999888643211 111233333333343344 4444444455555555555555555544444444444
Q ss_pred HHHhhhc-------------hh------hhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 176 VTILRGR-------------SK------LIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 176 V~~v~~d-------------ls------~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
+..+... +. .+.+|++.--.+.+.-+.+|.+++.
T Consensus 116 ~~~l~~~~~~dW~LaEaeyLlrlA~qrL~l~~Dv~~Al~lL~~AD~rLa~~~d 168 (372)
T PF04375_consen 116 LAALSQRSRDDWLLAEAEYLLRLANQRLQLEGDVQTALALLQSADQRLAELDD 168 (372)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Confidence 4433221 00 1455666666666666666665544
No 305
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.93 E-value=1.1e+02 Score=30.35 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.1
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 178 ~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
|++--+++-+.+|++++++|+++-..|..
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 45666888999999999999998877763
No 306
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=38.89 E-value=24 Score=29.96 Aligned_cols=66 Identities=11% Similarity=0.226 Sum_probs=31.4
Q ss_pred ceehhhhhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHH
Q 021850 92 KKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQ 170 (306)
Q Consensus 92 ~~~~~ivviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL-~~tKkhLsqRId~vD~kLDeq~eis~ 170 (306)
.++..+.++|.+| |-.|=++=|-.++|.= .+|+.+--++. +-+..+|..|++.+.. +|+.++.+
T Consensus 36 i~sq~~lv~glvg--------W~~sYlfRV~t~~MTy-----~~Q~k~Ye~a~~~~~~~~lqkRle~l~~--eE~~~L~~ 100 (104)
T PF11460_consen 36 IWSQALLVLGLVG--------WVSSYLFRVVTGKMTY-----MQQRKDYEEAVDQLTNEELQKRLEELSP--EELEALQA 100 (104)
T ss_pred HHHHHHHHHHHHH--------HHhHHHhhhccCCCcH-----HHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHH
Confidence 3444555666665 4344444444444431 23333333332 2234478888888764 34444444
Q ss_pred HH
Q 021850 171 AT 172 (306)
Q Consensus 171 ~i 172 (306)
+|
T Consensus 101 ei 102 (104)
T PF11460_consen 101 EI 102 (104)
T ss_pred Hh
Confidence 33
No 307
>PF05802 EspB: Enterobacterial EspB protein
Probab=38.83 E-value=3.1e+02 Score=27.45 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
+-+.++..=+.+++.+++..++-++|-.-.+++.+.++.+.+|+...-+....|-..+..-
T Consensus 148 q~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~A 208 (317)
T PF05802_consen 148 QQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADA 208 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888999999999999999999999999999999999998877776666555533
No 308
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=38.65 E-value=3.2e+02 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=18.0
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021850 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 120 yVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsq 153 (306)
.-.-.+++...+++=..|.+=|+--..|.+|..+
T Consensus 198 ~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg 231 (412)
T PF04108_consen 198 LKELHSLEQEMASLLESLTNHFDQCVTAVRHTEG 231 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555555555555555555544
No 309
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.59 E-value=3.6e+02 Score=25.80 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqR 154 (306)
..|++..+.++..+++.+.+|...+++++++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999988763
No 310
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=38.58 E-value=5.6e+02 Score=31.59 Aligned_cols=47 Identities=13% Similarity=0.316 Sum_probs=21.4
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhHHH---HHHHHHHHHHHhhhhhhhhHHH
Q 021850 118 MMFATRRSLSDACNSVARQLEDVYS---SISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 118 lMyVTKRnmsnAv~svtKqLeqVs~---sL~~tKkhLsqRId~vD~kLDe 164 (306)
.++.-|-.+..-+..+..+++...+ .+...++.+.+.++.+.+.+|+
T Consensus 898 ~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~ 947 (1930)
T KOG0161|consen 898 RLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE 947 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555444443 3344444444444444444443
No 311
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=38.45 E-value=4.9e+02 Score=27.29 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=16.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 133 vtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
+...++.+.+....+.+++...++.+...+.+.
T Consensus 90 ~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 90 LVAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555554443
No 312
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=38.35 E-value=2.1e+02 Score=23.89 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=47.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhh-------chhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRG-------RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~-------dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~ 225 (306)
++++.+|+++-.....+...-++++.-+. .-+.|..-...+...+...+..|. .=|+|||++.
T Consensus 6 ~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr----------~qI~~L~e~~ 75 (117)
T PF10280_consen 6 QQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELR----------RQIKYLEEVS 75 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhc
Confidence 46777888888888888888888887777 456677777777777777777666 3488888864
No 313
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=38.34 E-value=4e+02 Score=26.18 Aligned_cols=125 Identities=15% Similarity=0.251 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEeCCCCCCCCceehhhhhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhh
Q 021850 61 LLAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLED 139 (306)
Q Consensus 61 L~aQV~~LaqElr~L-sR~iTVvn~~~SgsGg~~~~~ivviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeq 139 (306)
+..|+..|.-|+.+. .+..-|+..+ .. +++++ .|..+ .-+..+|+.
T Consensus 57 l~~~~k~L~aE~~qwqk~~peii~~n---~~-----VL~~l---------------------gkeel----qkl~~eLe~ 103 (268)
T PF11802_consen 57 LMMRVKCLTAELEQWQKRTPEIIPLN---PE-----VLLTL---------------------GKEEL----QKLISELEM 103 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---HH-----HHHHH---------------------HHHHH----HHHHHHHHH
Confidence 889999999999998 6654566554 21 11122 24444 445567888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHH
Q 021850 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (306)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (306)
|-.++.+=.++|..-+++-..=|+++++|-........+++.....+.. +.++..|+.|+..++..+.-. +.
T Consensus 104 vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~k~~~e~L---l~ 175 (268)
T PF11802_consen 104 VLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKIKEYKEKL---LS 175 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHHHHHHHHH---HH
Confidence 8888888888888888888889999999999888888877765554443 456678889988887654432 22
Q ss_pred HHHHHHH
Q 021850 220 KLCDRAR 226 (306)
Q Consensus 220 ~LC~f~~ 226 (306)
.|-+|.+
T Consensus 176 ~LgeFLe 182 (268)
T PF11802_consen 176 FLGEFLE 182 (268)
T ss_pred HHHHHHH
Confidence 3445554
No 314
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=38.31 E-value=1.7e+02 Score=26.78 Aligned_cols=56 Identities=14% Similarity=0.405 Sum_probs=25.9
Q ss_pred HHhhhhhhHHH----HHHHHHHHHHHhhhhhhhhHHHHHHH---HHHHHHHHHHhhhchhhhh
Q 021850 132 SVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIVEI---SQATQEEVTILRGRSKLIG 187 (306)
Q Consensus 132 svtKqLeqVs~----sL~~tKkhLsqRId~vD~kLDeq~ei---s~~ik~eV~~v~~dls~ig 187 (306)
.|-+.|+.+.. .+..++++|...|+.+..+++...++ ++.++++++.+..+++.|.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 33456666666776666665444443 3444555655555555443
No 315
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=38.23 E-value=3.3e+02 Score=25.16 Aligned_cols=51 Identities=31% Similarity=0.348 Sum_probs=31.4
Q ss_pred HHHHHHhHHHHHHHH---hhhhhhHhHHHHHHHHHHHhhhcCCCccccccCCCC
Q 021850 193 VRDIVQTLESKLIEI---EGKQDITTLGVKKLCDRARELENGRPTELVQSGSLH 243 (306)
Q Consensus 193 v~~~V~~Le~Ki~~i---e~kQd~tn~GV~~LC~f~~~le~~~~~~~~Q~~s~~ 243 (306)
+.+....++..+-+| ..-||.|-.=|..++..++.+|..-..-+.-.++..
T Consensus 109 ~~~~~~~~~~~l~eIm~Aq~FQDLTGQ~IkKVv~~l~~vE~~L~~ll~~~g~~~ 162 (214)
T PF04344_consen 109 VEENAQQLRAQLTEIMMAQDFQDLTGQRIKKVVNLLQEVEERLVQLLVIFGPEE 162 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTT-------
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 333334444444433 458999999999999999999988777666544443
No 316
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=37.97 E-value=1.2e+02 Score=28.29 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=41.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021850 133 VARQLEDVYSSISAAQRQLSSKITSV---DRDVNKIVEISQATQEEVTILRGRSKLIG 187 (306)
Q Consensus 133 vtKqLeqVs~sL~~tKkhLsqRId~v---D~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (306)
+.-.++|+..++..+|+=+..-|+.+ |+|||.+..++..+.-++.-++.....++
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n 184 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSN 184 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44457888888888888888888877 77899999988888888776666554444
No 317
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=37.88 E-value=2.9e+02 Score=26.61 Aligned_cols=56 Identities=13% Similarity=0.334 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
+.|...-.+-..++.++.+.++.|...++.....|+..-++++...+-...+-+++
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I 182 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEI 182 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777888888877777777766666544444433333333333333
No 318
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.75 E-value=1.9e+02 Score=22.39 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 142 SSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
..+......+.++|..+...+++.
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~ 31 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLREL 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444
No 319
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.65 E-value=5.4e+02 Score=27.68 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850 136 QLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~kLDe 164 (306)
+++.=.+.-+.|.+.|.+|++.+..+|++
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~ 285 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQ 285 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 320
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=37.59 E-value=2.8e+02 Score=24.28 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=58.1
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHH----H-HHhhhchhhh
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK---IVEISQATQEE----V-TILRGRSKLI 186 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe---q~eis~~ik~e----V-~~v~~dls~i 186 (306)
+.|+|.=.-++..+-++.+-..|++++..=..+......=-+.+...+.. ...+-.++.++ . ......+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45777777788888888888888877777666665544444444443322 11232333333 2 3333444555
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 187 g~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
-.-|..++.+++....||.++|-.
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888888877654
No 321
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.12 E-value=1.5e+02 Score=29.96 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=44.8
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhH-HHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDE-FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~---ig~D-i~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~ 225 (306)
.+|-.+|.+.-++..-....+.+-+.+...+.. -+.| .+.+..-+..|..+|..+|.+......-+..++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555444444444445444444444433 2344 677777888888899988888888888777765543
No 322
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.79 E-value=1.5e+02 Score=31.43 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=42.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
+.|.+|+.-=|...+.-....+.|.++|++++..-...---|...+..-..|+.||=+|--+|..
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqei 401 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEI 401 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777444444445555666666666666655555543
No 323
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.78 E-value=3.7e+02 Score=25.43 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=48.6
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHH-----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYS-----SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~-----sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
+--+||.|+.|.+.+++.+.++++ .|+.+=++|...++.+++-...|. ..++..+.+-+..+-.|+..|
T Consensus 44 lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~~~QA------~~d~~tl~d~L~~~~~~~~~v 117 (230)
T cd07625 44 VSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDIDSIQA------TVDMATLYDGLEWISRDAYVV 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999888875 456777788877777766544332 345566666666666666665
Q ss_pred HH
Q 021850 194 RD 195 (306)
Q Consensus 194 ~~ 195 (306)
+.
T Consensus 118 Ke 119 (230)
T cd07625 118 KE 119 (230)
T ss_pred HH
Confidence 53
No 324
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=36.75 E-value=89 Score=26.13 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=0.0
Q ss_pred eEEEeC
Q 021850 79 VIIETS 84 (306)
Q Consensus 79 iTVvn~ 84 (306)
+.+||.
T Consensus 47 i~lIN~ 52 (133)
T PF06148_consen 47 IELIND 52 (133)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 334443
No 325
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.73 E-value=1.1e+02 Score=26.21 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKk---hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~L 200 (306)
..+.+-++.+.++-.+.+..|..+|+ +|+.|+=+|-.+++-..--.-.+..|-.+++..++.+..++..- ..+
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~p----~~~ 129 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNAP----AQL 129 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCc----hhH
Q ss_pred HHHHHHH
Q 021850 201 ESKLIEI 207 (306)
Q Consensus 201 e~Ki~~i 207 (306)
-+++.++
T Consensus 130 ~~rl~El 136 (141)
T PF13874_consen 130 KGRLNEL 136 (141)
T ss_dssp -------
T ss_pred HHHHHHH
No 326
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=36.73 E-value=5.2e+02 Score=31.68 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
+++..-+.+|-.+....-.+-+++|+.+.+||+.|.+.+...+.= .++++..++.-......++...+..|..+...
T Consensus 776 ~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~ 852 (1822)
T KOG4674|consen 776 ESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESE 852 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 344444555556666667788899999999999998877655433 44444444444444455555555555555444
Q ss_pred HH
Q 021850 204 LI 205 (306)
Q Consensus 204 i~ 205 (306)
++
T Consensus 853 ~~ 854 (1822)
T KOG4674|consen 853 LK 854 (1822)
T ss_pred HH
Confidence 44
No 327
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.63 E-value=4.5e+02 Score=26.30 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
|..|+..+++++...
T Consensus 166 l~~ql~~~~~~L~~a 180 (498)
T TIGR03007 166 IDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777654
No 328
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=36.62 E-value=2e+02 Score=30.82 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=51.7
Q ss_pred EecccCCCch--hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 021850 109 WWKGWKLPDM--MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (306)
Q Consensus 109 wWKGws~SDl--MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis 169 (306)
.=+|+|.+|| |-.-|--|..-.+-++-+-+.+-.++-+++.+...+++.|.+++.+.+-+.
T Consensus 361 ~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~ 423 (622)
T COG5185 361 RKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI 423 (622)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888885 888899999999999999999999999999999999999998877655443
No 329
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=36.62 E-value=3.4e+02 Score=26.01 Aligned_cols=91 Identities=10% Similarity=0.146 Sum_probs=55.1
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH------------Hhhhch
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRS 183 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~-tKkhLsqRId~vD~kLDeq~eis~~ik~eV~------------~v~~dl 183 (306)
.+|+..=.+..+.+..+.++++++.+.+-. .+++.-.||-.+.+.+=.........++-+. +.+.-+
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l 222 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYL 222 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHH
Confidence 466677788899999999999999976654 4445777777776665444433333322222 222333
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 184 KLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
..+.+|+.++.+++..+..++..+
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~l 246 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSSL 246 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666665543
No 330
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.59 E-value=2.6e+02 Score=27.92 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=69.2
Q ss_pred hhhHH-HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH--------------------------------HHH
Q 021850 123 RRSLS-DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------------------------------EIS 169 (306)
Q Consensus 123 KRnms-nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~--------------------------------eis 169 (306)
++++. ||...++.+|.+.+...+...-..-.||++-+.+-.+-. +.+
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHH
Confidence 45566 788889999999999999888777777766554422111 122
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHh----HHHHHHHH
Q 021850 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT----LGVKKLCD 223 (306)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn----~GV~~LC~ 223 (306)
..=.+||+.+...+.....-+..+..+|-.=+.-|++|.+|-+-|+ .|..-|-.
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~K 271 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHK 271 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHH
Confidence 2223567777777777777777777888777788888888766655 44455543
No 331
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.54 E-value=3.4e+02 Score=24.91 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=33.1
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~v 158 (306)
.-..-.|+.+.+.+..+.+.+...+..+..+|+.--++=..+
T Consensus 95 ~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 95 EKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667888999999999999999999999998877664443
No 332
>PHA03395 p10 fibrous body protein; Provisional
Probab=36.37 E-value=1.2e+02 Score=25.18 Aligned_cols=20 Identities=5% Similarity=0.285 Sum_probs=8.6
Q ss_pred HHHHHHhhhhhhHHHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAA 147 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~t 147 (306)
+|++.+..+++.+..++...
T Consensus 11 ~dIkavd~KVdalQ~~V~~l 30 (87)
T PHA03395 11 QDIKAVSDKVDALQAAVDDV 30 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444444333
No 333
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.31 E-value=2.4e+02 Score=27.54 Aligned_cols=28 Identities=18% Similarity=-0.002 Sum_probs=13.8
Q ss_pred hhhhHhHHHHHHHHHHHhhhcCCCccccc
Q 021850 210 KQDITTLGVKKLCDRARELENGRPTELVQ 238 (306)
Q Consensus 210 kQd~tn~GV~~LC~f~~~le~~~~~~~~Q 238 (306)
++..-+..+..||.+..-+. ...+++.|
T Consensus 262 ~r~~l~~~l~~l~~~~~~~~-~~~~~~~~ 289 (359)
T COG1463 262 NRPNLNQALANLRPLATLLV-DYLPGLEQ 289 (359)
T ss_pred hhhhhHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 44444555556666554444 33444444
No 334
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.28 E-value=74 Score=33.32 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHH--HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 159 DRDVNKIVEISQATQ--EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 159 D~kLDeq~eis~~ik--~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+..+|++.+.++.++ +...++...++.++.+++.+......+|.||+.+|
T Consensus 59 ~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLE 110 (475)
T PRK13729 59 DTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLG 110 (475)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334444444444433 34666777777777777766677777777777443
No 335
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.10 E-value=1.2e+02 Score=29.49 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=4.5
Q ss_pred hhhHHHHH
Q 021850 123 RRSLSDAC 130 (306)
Q Consensus 123 KRnmsnAv 130 (306)
|+-+.||.
T Consensus 109 rkEl~nAl 116 (290)
T COG4026 109 RKELKNAL 116 (290)
T ss_pred HHHHHHHH
Confidence 55566654
No 336
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=36.09 E-value=95 Score=28.75 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH--HHHHHHHHHhHHHHHHHHh
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE--FQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D--i~~v~~~V~~Le~Ki~~ie 208 (306)
+|...+.|--|+.|+.. +++.++-..||+++..+..|++.-+ + ..--.+.|.-||..|++.+
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~-~~~~~i~~e~v~~LE~~id~y~ 101 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPE-EKPLRITEEDVKRLEKRIDAYN 101 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCC-ccccccCHHHHHHHHHHHHHHH
Confidence 67778888888877765 6788888899999999999998665 2 1123445556666666443
No 337
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=36.07 E-value=92 Score=23.52 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
|+|+.+.....-..+..|||.+..++|+.
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdL 40 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444455555555666666666665544
No 338
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=35.84 E-value=3e+02 Score=29.86 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=62.5
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHh
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~ 227 (306)
|++|.+.|++|...+.++..=.+.+..|+.......+++-+++.+.++.---|+..=...+.-+..-.+=...|+.+++.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999888888888888999888888888888888888877777766666655555555555556655554
Q ss_pred hhc
Q 021850 228 LEN 230 (306)
Q Consensus 228 le~ 230 (306)
+++
T Consensus 161 ~q~ 163 (632)
T PF14817_consen 161 LQD 163 (632)
T ss_pred HHH
Confidence 433
No 339
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.74 E-value=1e+02 Score=23.53 Aligned_cols=9 Identities=0% Similarity=0.405 Sum_probs=3.4
Q ss_pred Hhhhhhhhh
Q 021850 153 SKITSVDRD 161 (306)
Q Consensus 153 qRId~vD~k 161 (306)
.++.+++..
T Consensus 7 n~~~~~~~~ 15 (55)
T PF05377_consen 7 NELPRIESS 15 (55)
T ss_pred HHHHHHHHH
Confidence 333333333
No 340
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=35.74 E-value=4.2e+02 Score=25.67 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 142 SSISAAQRQLSSKITSVDRD----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~k----LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
++|+....++.+.|+.+..+ +-+.++....+.+++..+...++.+..++..+.........+...+..+
T Consensus 17 ~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 17 QSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444 3334555666666666666666666666666666666655555544433
No 341
>PHA02414 hypothetical protein
Probab=35.72 E-value=1.2e+02 Score=25.89 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhhhc
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~le~ 230 (306)
|-.||+++.+|+.+=. .+ =++|-..+...+..++.+|-.|+..+.-=++||..--.-|..|-+-+..+..
T Consensus 9 Lv~~v~~ledKiQ~Ge---------lt-~kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~ 78 (111)
T PHA02414 9 LVSQVETLEDKIQEGE---------LT-DKGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAE 78 (111)
T ss_pred HHHHHHHHHHHHhcCc---------cc-cCCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4556677777764321 11 1234455566677788888888888777777777665555555555544443
No 342
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.68 E-value=2.3e+02 Score=22.63 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=37.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh---hHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIG---DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig---~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
+|-.+|.+.-+...-....+.+-+.+...+.... .|.+.+..-+..|-.+|..+|....-...-+..+|.
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433322 366666667777777777777666666666655543
No 343
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=35.62 E-value=10 Score=28.71 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=16.0
Q ss_pred eeeEEEecCccceeeecC
Q 021850 7 KLTFLVGAGILTSVLAKE 24 (306)
Q Consensus 7 Kv~ILvGAG~~GSVl~kn 24 (306)
|++++.|+|++.|.++++
T Consensus 1 kIlvvC~~Gi~TS~~~~~ 18 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVAN 18 (90)
T ss_dssp EEEEEESSSSHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHH
Confidence 799999999999998854
No 344
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=35.36 E-value=2.4e+02 Score=30.35 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhhHHHHHH---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 125 SLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~---~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
.++.-.+.+-..++++|+-+. +||+....+...+-+.|+.+++....+++|+..|+..----..|...++ .++
T Consensus 278 ~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr----~~e 353 (570)
T COG4477 278 EAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVR----KFE 353 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHH----HHH
Q ss_pred HHHHHHhh
Q 021850 202 SKLIEIEG 209 (306)
Q Consensus 202 ~Ki~~ie~ 209 (306)
.+|++++.
T Consensus 354 ~eL~el~~ 361 (570)
T COG4477 354 KELKELES 361 (570)
T ss_pred HHHHHHHH
No 345
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=35.24 E-value=2.5e+02 Score=22.96 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=32.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHH
Q 021850 156 TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (306)
Q Consensus 156 d~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (306)
+.|..|+.+..+.+...+=||.+++++=.....+++.++.-=..|+.+-..+..-|..=..-+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666666665555555555554444445544444444443333333
No 346
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.19 E-value=2.4e+02 Score=25.22 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
|-..|+.+..+|..+
T Consensus 28 l~q~ird~e~~l~~a 42 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKA 42 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677777777665
No 347
>PRK00846 hypothetical protein; Provisional
Probab=35.17 E-value=2.2e+02 Score=22.92 Aligned_cols=31 Identities=6% Similarity=0.007 Sum_probs=13.5
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 177 ~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
+++...+..-.+=|+.++++|-.....|+.+
T Consensus 16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L 46 (77)
T PRK00846 16 VELETRLSFQEQALTELSEALADARLTGARN 46 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333455555555444444443
No 348
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=35.16 E-value=35 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.6
Q ss_pred eeEEecccCCCchhhhhhhhHHHH
Q 021850 106 GYVWWKGWKLPDMMFATRRSLSDA 129 (306)
Q Consensus 106 gYmwWKGws~SDlMyVTKRnmsnA 129 (306)
-++.|+|++-.|-.+++..+|.++
T Consensus 22 y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 22 YLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEECCCCCccCccccHHHhCch
Confidence 378999999999999999999876
No 349
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.13 E-value=1.5e+02 Score=23.97 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhcC
Q 021850 60 DLLAEVSSVQQELSHV 75 (306)
Q Consensus 60 ~L~aQV~~LaqElr~L 75 (306)
.+..|.+.|.++++.|
T Consensus 10 ~l~~~~~~l~~~~~~l 25 (105)
T cd00632 10 QLQQQLQAYIVQRQKV 25 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555555
No 350
>PHA03332 membrane glycoprotein; Provisional
Probab=35.04 E-value=3.2e+02 Score=31.91 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhchhhhhhHH----HHHHHHHHhHHHH
Q 021850 168 ISQATQEEVTILRGRSKLIGDEF----QSVRDIVQTLESK 203 (306)
Q Consensus 168 is~~ik~eV~~v~~dls~ig~Di----~~v~~~V~~Le~K 203 (306)
|+..+++.+.++.+-++.+.+++ ..+..-+..|..+
T Consensus 924 isatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 924 ISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555444433333 3444444455444
No 351
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=34.84 E-value=1.6e+02 Score=32.07 Aligned_cols=56 Identities=7% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
..++.+..+-.+++.|..+-.++.+=+++-+.+++.|..||+.+++.-..+.-++.
T Consensus 72 ~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~ 127 (683)
T KOG1961|consen 72 KESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLE 127 (683)
T ss_pred HhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHH
Confidence 35568888999999999999999999999999999999999999987776665544
No 352
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=34.80 E-value=3.9e+02 Score=25.21 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=34.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH----------H--HHHHHHHHHhhhchhhhhhH
Q 021850 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI----------S--QATQEEVTILRGRSKLIGDE 189 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ei----------s--~~ik~eV~~v~~dls~ig~D 189 (306)
.+..-|+.-.-.+..+||+|.+|--.+|..--..... + ..+++|+.++...+++-.+|
T Consensus 111 pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~ 180 (244)
T cd07595 111 PLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDA 180 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 3444444445577788888888877777665554322 1 24566666666655554443
No 353
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=34.76 E-value=2.5e+02 Score=22.75 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHH
Q 021850 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (306)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (306)
....+++..+..|-+++-.+++....-...||.-=.+|...=+.+...|.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666666666666555555555555555544
No 354
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=34.69 E-value=1.7e+02 Score=20.87 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 171 ~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
.|...|.+++.=...|+.+|+.=..++..+|..++..
T Consensus 8 ~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~ 44 (63)
T PF05739_consen 8 ELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRA 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433
No 355
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.67 E-value=79 Score=26.56 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=43.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
|+.|-.+|+.+..++.+..+=...++++|.++-+.=.++.-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888999999888888888888888888777766777777777766655554
No 356
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=34.62 E-value=4.2e+02 Score=29.30 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=47.1
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkh---LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
.+++-+..+.+.+.+...++...|++ +.++.+.+--++++....-.+|+..+.+.+..++...+-...++.=...|-
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLK 614 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777665 334555555556666555555666655555555544444444444444444
Q ss_pred HHHHHH
Q 021850 202 SKLIEI 207 (306)
Q Consensus 202 ~Ki~~i 207 (306)
.|+.++
T Consensus 615 ~kle~~ 620 (698)
T KOG0978|consen 615 RKLERL 620 (698)
T ss_pred HHHHHh
Confidence 554433
No 357
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.56 E-value=2.2e+02 Score=24.48 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
++.+...++.|.+.++..-..+ ...++|+......++.....++.+...+..++..+.+-+.+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l-------~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQL-------ELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555544333333 33355555555566666667777888888887777766655
No 358
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=34.14 E-value=5.9e+02 Score=29.81 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 169 s~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
.+.++.++.+++..+.....++.........++.++...+.+-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666665555444
No 359
>PLN02320 seryl-tRNA synthetase
Probab=34.08 E-value=2.2e+02 Score=30.05 Aligned_cols=92 Identities=14% Similarity=0.255 Sum_probs=47.0
Q ss_pred ecccCCCchhhhhhhhHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021850 110 WKGWKLPDMMFATRRSLSDACNSVARQ-----LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 110 WKGws~SDlMyVTKRnmsnAv~svtKq-----LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (306)
||-. -|+=|. |.|-.....++.+- +|++ -.+-..+|.+..+++.+..+ .++++++|+.. .-..+.+
T Consensus 63 ~~~m--lD~k~i-r~n~~~v~~~l~~R~~~~~vd~l-~~ld~~~r~~~~~~~~lr~e---rn~~sk~i~~~--~~~~~~~ 133 (502)
T PLN02320 63 WKAA--IDFKWI-RDNKEAVAINIRNRNSNANLELV-LELYENMLALQKEVERLRAE---RNAVANKMKGK--LEPSERQ 133 (502)
T ss_pred cccc--cCHHHH-HhCHHHHHHHHHhcCCCcCHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh--hCCCCHH
Confidence 6643 565554 44555444444433 3333 22344556666666665544 56677777652 2223444
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 185 LIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 185 ~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
.+..+++.+.+-+..||.++..++.+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554443
No 360
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=33.69 E-value=5.6e+02 Score=28.04 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=20.5
Q ss_pred hhhhhhhhHHHHHHHHhh----hhhhHHHHHHHHHHHH
Q 021850 118 MMFATRRSLSDACNSVAR----QLEDVYSSISAAQRQL 151 (306)
Q Consensus 118 lMyVTKRnmsnAv~svtK----qLeqVs~sL~~tKkhL 151 (306)
.||+|.+.|...+..... .++++..-+..+..|+
T Consensus 159 ~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi 196 (806)
T PF05478_consen 159 CAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQI 196 (806)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 489998888777765544 4444444444444443
No 361
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.58 E-value=97 Score=30.75 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.9
Q ss_pred HHHHHHH---HHHHHhcC
Q 021850 61 LLAEVSS---VQQELSHV 75 (306)
Q Consensus 61 L~aQV~~---LaqElr~L 75 (306)
|.-..++ .++|++..
T Consensus 39 I~eAfk~~gi~~~d~s~~ 56 (300)
T KOG2629|consen 39 IQEAFKRDGIPAQDVSKQ 56 (300)
T ss_pred HHHHHHhcCCcccccccc
Confidence 4444444 55665555
No 362
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.57 E-value=3.2e+02 Score=23.72 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=43.2
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhH
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~ 216 (306)
..|++++..++|+...|-..==+.|-|=.+.|+.+.+--++++..-...+.+=..+..|.=--|.
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~ 92 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNC 92 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777666666677777777777777777777777776554444444433333
No 363
>PHA00276 phage lambda Rz-like lysis protein
Probab=33.57 E-value=1.3e+02 Score=27.06 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021850 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (306)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~dls~ig~Di~ 191 (306)
.+.++.+++...++|+..++.....+..|+.
T Consensus 50 ~QqaVaal~~~yqkEladaK~~~DrLiadlR 80 (144)
T PHA00276 50 TQAAINAVSKEYQEDLAALEGSTDRVIADLR 80 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3566677777778888777766655555543
No 364
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=33.50 E-value=3e+02 Score=23.40 Aligned_cols=47 Identities=9% Similarity=0.317 Sum_probs=23.7
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh----hhhHHHHHHHH
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL----IGDEFQSVRDI 196 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~----ig~Di~~v~~~ 196 (306)
|+|......+-++-++-..+.....+.+.++ +|+++ |..|+..|-.+
T Consensus 57 k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi-GDveNWa~~iE~Dl~~i~~~ 107 (121)
T PF06320_consen 57 KQLQRNTAKLAKQTDQWLKLVDSFNDALKEI-GDVENWAEMIERDLRVIEET 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555 44432 44444444433
No 365
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=33.48 E-value=2.8e+02 Score=27.58 Aligned_cols=47 Identities=32% Similarity=0.413 Sum_probs=32.2
Q ss_pred hhhhhhhHHH----HHHHHhhhhhhHHH----HHHHHHHHHHHhhhhhhhhHHHH
Q 021850 119 MFATRRSLSD----ACNSVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 119 MyVTKRnmsn----Av~svtKqLeqVs~----sL~~tKkhLsqRId~vD~kLDeq 165 (306)
=||-|.+.+= |+..+++=|++|-+ .|...|+.|..||+-|.--+|=+
T Consensus 14 tfAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLI 68 (302)
T PF05508_consen 14 TFAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLI 68 (302)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 3666766653 55667776766554 58888888999988887655433
No 366
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.44 E-value=1.5e+02 Score=22.63 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=14.9
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 176 V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
+.++...+....+-|+.++.+|-.-..+|+.+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L 37 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRL 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444554444444444433
No 367
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=33.29 E-value=3.1e+02 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHHHhhhh
Q 021850 191 QSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
..+.+.|..++.+|.+|+.++
T Consensus 138 ~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 138 KLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666554
No 368
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.16 E-value=4.6e+02 Score=28.41 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=48.7
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHH------HHHHHhhhhhhhh-------H-------HHHHHHHHHHHH
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ------RQLSSKITSVDRD-------V-------NKIVEISQATQE 174 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tK------khLsqRId~vD~k-------L-------Deq~eis~~ik~ 174 (306)
++++|==+++.+.+-.+++.++++..-...++.- +...+|++-+..+ + .+..--.+..-.
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Confidence 5666667777777777766666655443333222 2222233222222 1 111111222223
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 175 eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (306)
.+..++..++.--.+++.|+..+..|-.+|+ +|+++-.-|..
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie----~Q~iS~~dve~ 336 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIE----LQGISGEDVER 336 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHHH
Confidence 3444445555555555556655555555555 55555444433
No 369
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.96 E-value=2.4e+02 Score=25.18 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
.+.+...+|..+|..++..+.+.....+.++||...++--+.....-+..+
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777777777777777777777666665554444444443
No 370
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.95 E-value=1.4e+02 Score=30.85 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
|...+|.+..+++.+-.+ .++++++|......-..+...+..+++.+..-+..+|.+++.++
T Consensus 34 ld~~~r~~~~~~e~l~~~---rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~ 95 (429)
T COG0172 34 LDEERRKLLRELEELQAE---RNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELE 95 (429)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 455666666666666544 56677777632211111344444455555544444444444443
No 371
>KOG4670 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=32.87 E-value=54 Score=35.01 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH--HHhhhhhhHhH
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI--EIEGKQDITTL 216 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~--~ie~kQd~tn~ 216 (306)
+.+-.+. +-.-|-|.|+.|+..++++.+..+.=--.+...+..+..|..|.... ...+|+-=+- ....+|++.-+
T Consensus 368 R~win~t-iL~plvqeI~~vn~qfr~q~a~p~lqig~~sV~~lk~aAi~~~~~~~--~~p~lp~llpfLd~~snqeYlvq 444 (602)
T KOG4670|consen 368 RLWINLT-ILDPLVQEIRTVNQQFRQQQAQPQLQIGLISVMQLKVAAISEHRRLQ--GLPKLPWLLPFLDRSSNQEYLVQ 444 (602)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccceechhhHHHHHHHHHHHhhhhc--cCCccchhhhhccCCccHHHHHH
Confidence 3343333 55678889999999998776655443334444444444444432111 1112222111 34568999999
Q ss_pred HHHHHHH
Q 021850 217 GVKKLCD 223 (306)
Q Consensus 217 GV~~LC~ 223 (306)
-|+.||+
T Consensus 445 RIKeLaq 451 (602)
T KOG4670|consen 445 RIKELAQ 451 (602)
T ss_pred HHHHHhh
Confidence 9999998
No 372
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.60 E-value=3e+02 Score=29.71 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=47.4
Q ss_pred ecccCCCchhhhhhhhHHHHHHHHh---hhhhhHHHHHHHHHHHHHHh-------hhhhhhhHHHHHHHHHHHHHH---H
Q 021850 110 WKGWKLPDMMFATRRSLSDACNSVA---RQLEDVYSSISAAQRQLSSK-------ITSVDRDVNKIVEISQATQEE---V 176 (306)
Q Consensus 110 WKGws~SDlMyVTKRnmsnAv~svt---KqLeqVs~sL~~tKkhLsqR-------Id~vD~kLDeq~eis~~ik~e---V 176 (306)
|-+-+--+.|- |==|.-+|.+-+ +.=|+.++.-+..|..|.+- |+++..+.++..|..+..+.+ .
T Consensus 184 ~q~~~ed~~m~--k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~ 261 (581)
T KOG0995|consen 184 EQEEAEDKTMN--KLFFDYTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKE 261 (581)
T ss_pred hccchHHHHHH--HHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Confidence 77776666664 222222222222 22233344444444444443 444444433333333333211 2
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 177 ~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.-++..-+.+.+|+..++..|..+++|...++.
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Confidence 223444455778888888888877766655544
No 373
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.53 E-value=2.1e+02 Score=21.91 Aligned_cols=11 Identities=9% Similarity=0.416 Sum_probs=4.0
Q ss_pred hhhhhHHHHHH
Q 021850 184 KLIGDEFQSVR 194 (306)
Q Consensus 184 s~ig~Di~~v~ 194 (306)
.++..||..++
T Consensus 20 dqLs~dv~~lr 30 (56)
T PF04728_consen 20 DQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 374
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.49 E-value=1.4e+02 Score=25.86 Aligned_cols=59 Identities=14% Similarity=0.298 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHhhhchhhhhh
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV--NKIVEISQATQEEVTILRGRSKLIGD 188 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kL--Deq~eis~~ik~eV~~v~~dls~ig~ 188 (306)
|..-+..+..++..+...+ ++|...+..+...+ ++..+...+.++|+..+...+..+..
T Consensus 77 ld~ei~~L~~el~~l~~~~----k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEV----KSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444433333 34444455555543 45555555556666665555555444
No 375
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.46 E-value=2.1e+02 Score=28.22 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 146 ~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (306)
.=|.-|...||.|-++|++..|.-.+.+.+..+-..+++....-++.++.-+..|-..|. +-.+-+..+|+-.
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~--~rdeli~khGlVl 177 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK--QRDELIEKHGLVL 177 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCeee
Confidence 457888999999999999999999999988877666666666666666655555555553 2233345556443
No 376
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=32.27 E-value=4.3e+02 Score=29.41 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHH---HHHhhhhh-------hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQ---LSSKITSV-------DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkh---LsqRId~v-------D~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~ 195 (306)
+.+.-..+-.|++-+-++|.+...| |..=+|.+ ...+++..+-...+++|.+-....++.+++-++.-..
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677788787777766543 44444444 4444444444455555555554445444444444444
Q ss_pred HHHhHHHHHH
Q 021850 196 IVQTLESKLI 205 (306)
Q Consensus 196 ~V~~Le~Ki~ 205 (306)
-|.-|-+||+
T Consensus 393 ki~~Lq~kie 402 (775)
T PF10174_consen 393 KINVLQKKIE 402 (775)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 377
>PRK01156 chromosome segregation protein; Provisional
Probab=32.25 E-value=4.6e+02 Score=28.49 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021850 136 QLEDVYSSISAAQRQLSSKITSVDRD 161 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~k 161 (306)
.++..++.+..+.+.+..+|..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~~ 188 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDYL 188 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655555443
No 378
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.21 E-value=81 Score=31.38 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQR 149 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKk 149 (306)
++.=+..++.+.+.+++++....++..+.
T Consensus 235 ~A~l~~~~~~~~l~~~~~~~~~~i~~l~~ 263 (406)
T PF02388_consen 235 LAELNGKEYLESLQEKLEKLEKEIEKLEE 263 (406)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 379
>PRK15396 murein lipoprotein; Provisional
Probab=32.18 E-value=1.7e+02 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=8.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 021850 154 KITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV 176 (306)
.++.|..|.|+...-....+.++
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~ 55 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDV 55 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333333
No 380
>PRK15396 murein lipoprotein; Provisional
Probab=31.97 E-value=1.3e+02 Score=24.12 Aligned_cols=10 Identities=0% Similarity=-0.087 Sum_probs=4.4
Q ss_pred hhHhHHHHHH
Q 021850 212 DITTLGVKKL 221 (306)
Q Consensus 212 d~tn~GV~~L 221 (306)
.++|.-+...
T Consensus 63 ~raN~RlDn~ 72 (78)
T PRK15396 63 ARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 381
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.96 E-value=4.5e+02 Score=24.95 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
+-+=+-|+-+-.||.+--+++++-..||-.|+..|+.++...-+-....++.-
T Consensus 91 q~~~~lctR~Q~Hl~~cA~aVA~dQn~lv~r~K~v~~s~~tLf~~~~~~qk~y 143 (217)
T KOG4515|consen 91 QPFFRLCTRLQEHLAVCAKAVAADQNKLVARCKSVEASMITLFEETRAHQKQY 143 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557799999999999999999999999999999999877666666655543
No 382
>PRK10807 paraquat-inducible protein B; Provisional
Probab=31.95 E-value=1.5e+02 Score=31.22 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=8.0
Q ss_pred HHhhhcCCCcccccc
Q 021850 225 ARELENGRPTELVQS 239 (306)
Q Consensus 225 ~~~le~~~~~~~~Q~ 239 (306)
+..++..+++=++..
T Consensus 520 ~~~L~~~P~aLi~g~ 534 (547)
T PRK10807 520 LKTLNEKSNALVFEA 534 (547)
T ss_pred HHHHHhCchhhhcCC
Confidence 445666665555443
No 383
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=31.93 E-value=50 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.8
Q ss_pred eeeEEecccCCCchhhhhhhhHHH
Q 021850 105 YGYVWWKGWKLPDMMFATRRSLSD 128 (306)
Q Consensus 105 YgYmwWKGws~SDlMyVTKRnmsn 128 (306)
.-|+.|+|++-++--+++..++.+
T Consensus 19 ~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 19 EYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred EEEEEECCCCCccCceeeHHHHHH
Confidence 347899999999999999988876
No 384
>PRK01203 prefoldin subunit alpha; Provisional
Probab=31.87 E-value=2.9e+02 Score=24.20 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=22.8
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISA 146 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~ 146 (306)
++.-||=||.==| ++.+++.-+.++++++...+..
T Consensus 71 VlVdIGTGy~VEK-------------~~e~kie~L~~~ie~Le~~i~~ 105 (130)
T PRK01203 71 LIVPIGSGVYIAE-------------ERERTIERLKENLEDLKDSIQK 105 (130)
T ss_pred EEEEcCCCeEEEe-------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888886544 4556666666666666555544
No 385
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=31.86 E-value=2.3e+02 Score=30.10 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=6.6
Q ss_pred cccchhhHHHHHh
Q 021850 287 NWGSHQGVLRFLM 299 (306)
Q Consensus 287 ~~~~~~~~~~~~~ 299 (306)
.|..|....+-|+
T Consensus 200 ~~~~h~~~~~~L~ 212 (701)
T PF09763_consen 200 SLPKHSSLHNELL 212 (701)
T ss_pred ChHHHHHHHHHHH
Confidence 4555655544443
No 386
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=31.82 E-value=13 Score=33.58 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=12.8
Q ss_pred eEEEecCccceeeecC
Q 021850 9 TFLVGAGILTSVLAKE 24 (306)
Q Consensus 9 ~ILvGAG~~GSVl~kn 24 (306)
+|+||+|.+|++++..
T Consensus 3 ~iIVGsG~~G~v~A~r 18 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASR 18 (296)
T ss_dssp EEEES-SHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHH
Confidence 5899999999998753
No 387
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=31.81 E-value=14 Score=33.17 Aligned_cols=14 Identities=36% Similarity=0.330 Sum_probs=9.3
Q ss_pred eEEEecCccceeee
Q 021850 9 TFLVGAGILTSVLA 22 (306)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (306)
+++||||++|..++
T Consensus 4 V~IvGaG~aGl~~A 17 (356)
T PF01494_consen 4 VAIVGAGPAGLAAA 17 (356)
T ss_dssp EEEE--SHHHHHHH
T ss_pred EEEECCCHHHHHHH
Confidence 57899999997654
No 388
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=31.69 E-value=2.6e+02 Score=27.30 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 141 YSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 141 s~sL~~tKkhLsqR---Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
+..|+..-||+.+. |..-|.-|=+.-|.+-..-+||.+++.+-.+|.+.++.|-.--..||.-++.+|.+
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888765 55557888888888899999999999999999999999988888888888877764
No 389
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.67 E-value=3.1e+02 Score=26.84 Aligned_cols=69 Identities=23% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhhhcC
Q 021850 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (306)
Q Consensus 163 Deq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~le~~ 231 (306)
+++++--+.+++|=+++...++....++..++.-+..||...++++.+-+.-..-|+.|-.-...++++
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 333333333344444444444445555555555555555555555555444444455554444444443
No 390
>PRK04098 sec-independent translocase; Provisional
Probab=31.46 E-value=4e+02 Score=24.18 Aligned_cols=48 Identities=10% Similarity=0.394 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHhhh--hhhHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHH
Q 021850 122 TRRSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDR--DVNKIVEIS 169 (306)
Q Consensus 122 TKRnmsnAv~svtKq--LeqVs~sL~~tKkhLsqRId~vD~--kLDeq~eis 169 (306)
-||.++++-+.+-.. ++.+-+.+...|+.|.+-.+.|.. .+|+..++.
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~ 90 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLK 90 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHh
Confidence 344445544444442 234455555666667766666665 444444443
No 391
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.34 E-value=3e+02 Score=25.24 Aligned_cols=20 Identities=10% Similarity=0.380 Sum_probs=9.2
Q ss_pred HHHHHHhhhhhhhhHHHHHH
Q 021850 148 QRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~e 167 (306)
+..|++|++.+..++++...
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ 139 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEK 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 392
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.66 E-value=99 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021850 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL~~tKkhLsq 153 (306)
-|+++=++++.+.+|+.++++.+++-|.++..
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888777776654
No 393
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.64 E-value=1.5e+02 Score=23.43 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=32.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (306)
.++.+....+--.|..+|..+ .-+..++...++|.+-.+..++++..-+.-+..++
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i-~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAI-RELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444454443 34566788888887777777777766555554443
No 394
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=30.61 E-value=5.4e+02 Score=25.46 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHH
Q 021850 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (306)
Q Consensus 146 ~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~ 225 (306)
.+-++|.+|=+.|...+++...=-..|++|+. +.+-+-.+.+- .++.+-||+-.--+-.|.+.+
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emr------tsFaG~Sq~lA----------~RVqGFkdYLvGsLQDLa~sa 67 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEKEMR------TSFAGQSQDLA----------IRVQGFKDYLVGSLQDLAQSA 67 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccccchHHHH----------HHHhhhHHHHHHHHHHHHHHH
Confidence 34455666666665555555544555555542 11222223333 256667888878888899999
Q ss_pred HhhhcCCCccccccCC
Q 021850 226 RELENGRPTELVQSGS 241 (306)
Q Consensus 226 ~~le~~~~~~~~Q~~s 241 (306)
+.++--+.+...|-++
T Consensus 68 EqLeLv~~~~~~~psp 83 (283)
T PF11285_consen 68 EQLELVPQPVVVQPSP 83 (283)
T ss_pred HhhccCCCCcCCCCCc
Confidence 9999888777766543
No 395
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.60 E-value=3.5e+02 Score=27.91 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe 164 (306)
+.|..+-.+-..++.++.++++.|...++.+...|+.--+++++
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ 182 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINS 182 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777766666444443333
No 396
>PF14182 YgaB: YgaB-like protein
Probab=30.52 E-value=3e+02 Score=22.49 Aligned_cols=47 Identities=11% Similarity=0.302 Sum_probs=32.6
Q ss_pred HhhhhhhhhHHHHHHHHHHHH-----HHHHHhhhchhhhhhHHHHHHHHHHh
Q 021850 153 SKITSVDRDVNKIVEISQATQ-----EEVTILRGRSKLIGDEFQSVRDIVQT 199 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik-----~eV~~v~~dls~ig~Di~~v~~~V~~ 199 (306)
-++=.|-..||-|.+|-++.. .+...++..+.+...+++.||.+.+.
T Consensus 14 D~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 14 DKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888888877765 34666777777777777777766653
No 397
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.47 E-value=2e+02 Score=24.50 Aligned_cols=52 Identities=8% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~ 199 (306)
|+.|-.++..+...+.+..+-...++++|.++-+.=....-+-+.++..+..
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776666666666666666655555555555555544443
No 398
>PRK09458 pspB phage shock protein B; Provisional
Probab=30.45 E-value=35 Score=27.49 Aligned_cols=44 Identities=7% Similarity=0.300 Sum_probs=28.4
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 118 lMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe 164 (306)
|=|.||+.-+.. ++..=++--+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~~---Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQG---LSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 447787765543 33333344455566667899999998887764
No 399
>PRK12482 flagellar motor protein MotA; Provisional
Probab=30.37 E-value=2.6e+02 Score=27.35 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=66.1
Q ss_pred ehhhhhhhhheeeeEEecc-----cCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhh---hhhHHHH
Q 021850 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKI 165 (306)
Q Consensus 94 ~~~ivviGavGYgYmwWKG-----ws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~v---D~kLDeq 165 (306)
.++++++|++.+||+.=.| |.++-+|-|-=-.+ ++.-++.-++++-..+...|+-+..+-.+. .+-++..
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~--ga~lis~p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~l 82 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGI--GAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLL 82 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Confidence 3556677888777776444 55666666655544 344567888999999999999887765555 4778888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 021850 166 VEISQATQEE-VTILRGRSKLIGD 188 (306)
Q Consensus 166 ~eis~~ik~e-V~~v~~dls~ig~ 188 (306)
.++++.-|.| +-.+..+++++.+
T Consensus 83 v~ls~~aRr~GllaLE~~i~~~~d 106 (287)
T PRK12482 83 YELLEMVQEGGLKRLDQHIEIPEE 106 (287)
T ss_pred HHHHHHHHhcCHHHHHHhhcCccc
Confidence 8998888876 6666766666654
No 400
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=30.37 E-value=4.6e+02 Score=24.50 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhhhhhHHHHHHH-HHHHHHHhhhhhhhhHHH-------HHHHHHHHHHH--H----HHhhhchhhhhhHH
Q 021850 125 SLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNK-------IVEISQATQEE--V----TILRGRSKLIGDEF 190 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~-tKkhLsqRId~vD~kLDe-------q~eis~~ik~e--V----~~v~~dls~ig~Di 190 (306)
+..+.+..+.++++++.+.+-. .+++...||-++...+-. +.++...+... . .+.+..+..+.+++
T Consensus 146 ~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~ 225 (318)
T TIGR00383 146 SYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHI 225 (318)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHH
Confidence 4455666777777777666533 223333344444444333 33333322211 0 11222233344466
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 021850 191 QSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie 208 (306)
+.+.+.+..+..+++.+.
T Consensus 226 ~~l~~~~~~~~e~l~~l~ 243 (318)
T TIGR00383 226 LSLLEMIETYRELLSSLM 243 (318)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666443
No 401
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.26 E-value=5.3e+02 Score=25.25 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=51.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH------HHHhH
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD------IVQTL 200 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~------~V~~L 200 (306)
.+++.+|+-.|.-+...+..+-.++.++++..-..|-.. ..+.+.|...|+.=..+.++|..++. .+..|
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~L 170 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI----RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVL 170 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHH
Confidence 678888888888888888888888888877665555332 23334455566666666666666654 34556
Q ss_pred HHHHHHHhh
Q 021850 201 ESKLIEIEG 209 (306)
Q Consensus 201 e~Ki~~ie~ 209 (306)
|..|.+.|.
T Consensus 171 eqELvraEa 179 (271)
T PF13805_consen 171 EQELVRAEA 179 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
No 402
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=30.20 E-value=4.4e+02 Score=24.30 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=19.7
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~v 158 (306)
.+++.++.++..-+..+.+.++.-|..+...|++.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~ 122 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEEL 122 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555555555555555555555555555555553
No 403
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=30.18 E-value=4.3e+02 Score=28.95 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=45.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~ 191 (306)
..+--..++|+.+|..+=.++.+||=++...++....=+...++++..|+++++....|-.
T Consensus 41 ~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 41 MKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 3333356778888888888888888888888888877777778888777777776655443
No 404
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.16 E-value=4.5e+02 Score=24.97 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=22.6
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 174 EEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 174 ~eV~~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
+||+..-..+.++...|..|++.|+.||.
T Consensus 192 EEi~ksm~pv~~La~qir~irRlve~les 220 (222)
T KOG4514|consen 192 EEITKSMKPVEQLAQQIRQIRRLVEMLES 220 (222)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 55666666778888888999999988875
No 405
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.09 E-value=1.5e+02 Score=25.60 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik 173 (306)
-|.+|.+.==|-+.|+-+.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 58 eMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 58 EMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4666666666777777777777777777777777666666655555443
No 406
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=30.00 E-value=1.8e+02 Score=31.61 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
++.+|..++++.+..++.+|.+.+.-..+. -..+..-+.++..-++.|-..++.+=.||
T Consensus 256 sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q---------------------~~aL~~L~~qL~nnF~AISssI~dIy~RL 314 (610)
T PF01601_consen 256 SFNKAIGNIQLGFTTTASALNKIQDVVNQQ---------------------GQALNQLTSQLSNNFGAISSSIQDIYNRL 314 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456677777777777777776544333222 11222222334444455555555555777
Q ss_pred HHHhhhhh
Q 021850 205 IEIEGKQD 212 (306)
Q Consensus 205 ~~ie~kQd 212 (306)
+.+|+.+.
T Consensus 315 d~leAdaQ 322 (610)
T PF01601_consen 315 DQLEADAQ 322 (610)
T ss_dssp HHHHHH--
T ss_pred HHHhhccc
Confidence 77776654
No 407
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.99 E-value=3.8e+02 Score=27.22 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId 156 (306)
+.|..+-.+-..+++++.+++..|...++.+...|+
T Consensus 127 ~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~ 162 (456)
T PRK07191 127 PMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRD 162 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677777777777777766666665554
No 408
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.94 E-value=4.3e+02 Score=24.12 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHH---HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHH
Q 021850 142 SSISAAQRQLSSKITS-VDRDVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~-vD~kLDeq~eis~~ik~e---V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~G 217 (306)
++|+.||++=..|=-. -.-.||++...-+..++. ...++...+....++..++..+..|+.++..++.++.....-
T Consensus 61 ~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 61 EAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566554433210 122355655555555542 445555556677777788888888888888887766666555
Q ss_pred HHHHHHHH
Q 021850 218 VKKLCDRA 225 (306)
Q Consensus 218 V~~LC~f~ 225 (306)
-..|....
T Consensus 141 Y~~L~~Im 148 (161)
T TIGR02894 141 YQTLIDIM 148 (161)
T ss_pred HHHHHHHH
Confidence 55554443
No 409
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=29.81 E-value=3.4e+02 Score=22.91 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=41.3
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ 166 (306)
|.|-+--.|+.+..-+..+.+.|+.+.+++..-...+.++|...|+.+|...
T Consensus 3 ~~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~ 54 (212)
T TIGR02135 3 FDEELKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALE 54 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHH
Confidence 3455566788888888889999999999998777778888888888877764
No 410
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.76 E-value=7.8e+02 Score=29.47 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhcC
Q 021850 59 NDLLAEVSSVQQELSHV 75 (306)
Q Consensus 59 ~~L~aQV~~LaqElr~L 75 (306)
+++...++..++=+..+
T Consensus 233 ~~m~~~l~~~r~t~~~~ 249 (1486)
T PRK04863 233 QDMEAALRENRMTLEAI 249 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34666666666655555
No 411
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.74 E-value=5.5e+02 Score=27.01 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhhhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 021850 96 VIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (306)
Q Consensus 96 ~ivviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~e 175 (306)
+.++++.+|-+-.||- ..+-.+.-....-.+.+++.+.+..++..+. +++.+...++...+-....+++
T Consensus 7 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 75 (475)
T PRK10361 7 VYAVIALVGVAIGWLF----------ASYQHAQQKAEQLAEREEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSI 75 (475)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 176 V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
..+++..+....-.++.-+... +.|+..++..+..-..=...|..
T Consensus 76 ~~~~~~~~~~l~~~le~~~~~~---~ek~~~l~~~~~~L~~~F~~LA~ 120 (475)
T PRK10361 76 NTSLEADLREVTTRMEAAQQHA---DDKIRQMINSEQRLSEQFENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 412
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.63 E-value=4.2e+02 Score=28.41 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=3.8
Q ss_pred HHHHHHhh
Q 021850 38 LKIVSKLI 45 (306)
Q Consensus 38 lk~v~k~~ 45 (306)
|-++...|
T Consensus 101 l~fLiekL 108 (594)
T PF05667_consen 101 LMFLIEKL 108 (594)
T ss_pred HHHHHHHC
Confidence 44444444
No 413
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=29.62 E-value=2.7e+02 Score=21.57 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 021850 138 EDVYSSISAAQRQLSSKITS 157 (306)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~ 157 (306)
+++.+.+.+++.-+..-|+.
T Consensus 6 ~~i~~~v~~v~~im~~Ni~~ 25 (89)
T PF00957_consen 6 EQIQEQVEEVKNIMRENIDK 25 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 414
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.58 E-value=1.9e+02 Score=28.02 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=6.3
Q ss_pred CCCCCCchhhhh
Q 021850 256 XXXXXIPMDLIR 267 (306)
Q Consensus 256 ~~~~~~~~~~~~ 267 (306)
.+.--+|.++.+
T Consensus 114 ~gG~lIP~~~~~ 125 (378)
T TIGR01554 114 DGGVTIPEEIGT 125 (378)
T ss_pred CCCeeCCHHHHH
Confidence 344456666543
No 415
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=29.58 E-value=1.4e+02 Score=30.15 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=11.1
Q ss_pred HHHhhhchhhhhhH---HHHHHHHHHhH
Q 021850 176 VTILRGRSKLIGDE---FQSVRDIVQTL 200 (306)
Q Consensus 176 V~~v~~dls~ig~D---i~~v~~~V~~L 200 (306)
+..+-.|++.+=.| .++++..|++|
T Consensus 339 i~~vs~dv~~ft~D~~~r~~Lr~li~~L 366 (370)
T PLN03094 339 IESISSDISGFTGDEATRRNLKQLIQSL 366 (370)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33334444444344 34455555554
No 416
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.34 E-value=3.2e+02 Score=27.87 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=27.0
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 178 ~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (306)
++++.-+.+..+.+.+..+.+.||..+.+|..+=|+-+.-+.-
T Consensus 236 slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 236 SLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444455566667777777777777777766666665554
No 417
>PF13514 AAA_27: AAA domain
Probab=29.34 E-value=3.4e+02 Score=30.64 Aligned_cols=92 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
+.+......+..+|+.+..++++..+-...++.++..+.++ +++..+..-.+.++.+|.+....=-....+...|
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~-----~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL 966 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGD-----DDAAELEQEREEAEAELEELAEEWAALRLAAELL 966 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcCCCccccc
Q 021850 222 CDRARELENGRPTELVQ 238 (306)
Q Consensus 222 C~f~~~le~~~~~~~~Q 238 (306)
-+......+...+.+++
T Consensus 967 ~~a~~~~r~~~~p~vl~ 983 (1111)
T PF13514_consen 967 EEAIERYREERQPPVLA 983 (1111)
T ss_pred HHHHHHHHHHhhHHHHH
No 418
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.32 E-value=3.6e+02 Score=28.80 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=37.1
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~ 177 (306)
+.|..+-.+-.+++.++.++++.|...++.+..+|+.--+++++..+=...+-+++.
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~ 195 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIV 195 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788888888888888888888888887775544444333333333334443
No 419
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=29.30 E-value=5.1e+02 Score=27.69 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=35.4
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
+.|+.+++.....-..|++.++.-+..|+..|..||+.|.
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r 347 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDR 347 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888899999999999999999999998654
No 420
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.30 E-value=5.2e+02 Score=24.80 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=6.2
Q ss_pred HHHHHhhhhhhhhHH
Q 021850 149 RQLSSKITSVDRDVN 163 (306)
Q Consensus 149 khLsqRId~vD~kLD 163 (306)
..+..+|+.+..+++
T Consensus 62 ~~~e~ei~~~r~r~~ 76 (239)
T COG1579 62 SQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 421
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=29.26 E-value=4.9e+02 Score=30.55 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCchhhhhhhhHHHHHHHHhh----------------hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 021850 114 KLPDMMFATRRSLSDACNSVAR----------------QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (306)
Q Consensus 114 s~SDlMyVTKRnmsnAv~svtK----------------qLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~ 177 (306)
+.+|+-+..-.+.+-||..+-. -+.+..+.++..-+...+.+.....++.+..+-.++.+++..
T Consensus 893 ~~p~f~~~~v~~~s~a~~~l~~wv~a~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~ 972 (1395)
T KOG3595|consen 893 QNPDFVPEKVNRASLACEGLCLWVIAIDKYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYE 972 (1395)
T ss_pred CCccCCHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556655432 222333333333333334444444444444444444444444
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 178 ILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 178 ~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
..-.....+..|+..........+.
T Consensus 973 ~~~~~~~~~~~~~~~~~~k~~~a~~ 997 (1395)
T KOG3595|consen 973 QLIAEKQELEEDMDACELKLLRAEE 997 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333
No 422
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.22 E-value=3.9e+02 Score=28.23 Aligned_cols=58 Identities=19% Similarity=0.365 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
|.+--+.|.+|-+++|.++++. ++.+=.++..+.++...+...++..+..|..+++.+
T Consensus 85 l~~eN~~L~~r~~~id~~i~~a------v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 85 LKAENERLQKREQSIDQQIQQA------VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHhhhhHHHHHHHH------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333445555555555554333 222223344445555666666776677776766544
No 423
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.19 E-value=2.7e+02 Score=33.09 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 158 vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+..+|-+..+-...|.+++.-...+|+.+..++..|..++..|+.+++.|.
T Consensus 1244 ~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1244 LTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333343444444445566666667777777777888888888887777554
No 424
>PHA03386 P10 fibrous body protein; Provisional
Probab=28.99 E-value=1.6e+02 Score=24.74 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+..|+.++.+.. .++.+-..+.+|..|+..|.
T Consensus 25 Q~qV~dv~~n~~----~LDa~~~qL~~l~tkV~~Iq 56 (94)
T PHA03386 25 QTQLNGLEEDSQ----PLDGLPAQLTELDTKVSDIQ 56 (94)
T ss_pred HHHHHHHHhcch----hhhhHHHHHHHHHHHHHHHH
Confidence 444555555522 24555555566666776553
No 425
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.90 E-value=4.4e+02 Score=25.66 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=3.9
Q ss_pred hhheeeeEE
Q 021850 101 VAVGYGYVW 109 (306)
Q Consensus 101 GavGYgYmw 109 (306)
.|+|+-|.|
T Consensus 194 ~Aa~~Lc~W 202 (344)
T PF12777_consen 194 KAAGSLCKW 202 (344)
T ss_dssp TTHHHHHHH
T ss_pred hcchHHHHH
Confidence 344444444
No 426
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.80 E-value=4.4e+02 Score=26.31 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=42.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhh--------------hhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKIT--------------SVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId--------------~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~ 196 (306)
..|..||..=+.++...-+.+....+ +|..-+-+..|--+..+.||..++..+....+|++.++..
T Consensus 29 KlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~ 108 (319)
T PF09789_consen 29 KLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREK 108 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 34445555555555555544443222 2223345666666777788888888888888888888875
Q ss_pred HHhH
Q 021850 197 VQTL 200 (306)
Q Consensus 197 V~~L 200 (306)
+...
T Consensus 109 la~~ 112 (319)
T PF09789_consen 109 LARQ 112 (319)
T ss_pred HHhh
Confidence 5543
No 427
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=28.77 E-value=4.2e+02 Score=23.54 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=32.9
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ 166 (306)
-.|+.+.+-+..+.+.|+.+.+++..--.++.++|...|+.+|+..
T Consensus 20 ~~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~ 65 (236)
T PRK11115 20 SIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMME 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHH
Confidence 3566667777777777777777777666677777777777776654
No 428
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.65 E-value=4.5e+02 Score=23.85 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=18.0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~ 195 (306)
..++....+++...+-.+..++++...+..+......++.-+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444333
No 429
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=28.64 E-value=2.5e+02 Score=26.57 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=14.4
Q ss_pred hhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 179 LRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 179 v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
++.+++.|+.++..+...++.+|..|.
T Consensus 20 ~~~~L~~i~~~~~~i~~~l~~~~~~l~ 46 (243)
T PF07160_consen 20 LKDTLSKIDQEVSAIEELLNDIEQELQ 46 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555444
No 430
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=28.64 E-value=5.9e+02 Score=25.22 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=11.4
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 176 VTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 176 V~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
+...+..++++..-...++..+.+++.+
T Consensus 143 L~~~~~~l~q~~~k~~~~q~~l~~~~~~ 170 (301)
T PF06120_consen 143 LAVAQERLEQMQSKASETQATLNDLTEQ 170 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444433
No 431
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=28.61 E-value=22 Score=33.03 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCceehh-hhhhhhheeeeEE-eccc--CCCchhhhhhhhHHHHHHHHhh
Q 021850 62 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGW--KLPDMMFATRRSLSDACNSVAR 135 (306)
Q Consensus 62 ~aQV~~LaqElr~L-sR~iTVvn~~~SgsGg~~~~~-ivviGavGYgYmw-WKGw--s~SDlMyVTKRnmsnAv~svtK 135 (306)
.+=.++|+++|.+. ...+.|+=.++-|+ .--.+. -+++|+.|.-|+| |.|- -|..-+-+|.+..+|-.++.+.
T Consensus 133 d~sA~~i~~~l~~~~g~~v~ViI~Dt~gr-~~r~G~~~vaig~~Gi~~~~d~~G~~d~~g~~L~~T~~~~aD~la~aa~ 210 (228)
T PF01996_consen 133 DASARRIREELKERTGKDVGVIITDTNGR-PWRLGQTGVAIGVAGIKPLRDYRGEKDLFGRELKVTPRAVADELASAAD 210 (228)
T ss_dssp HHHHHHHHHHHHHHHS---EEEEEEEEEE-TTEECEEEEEEEEESB-SEEE-TT-B-TTS-B-S--EEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCceEEEEECCCCc-EEecCCccchhhccCCccccccCCCchhhhChhccCchhhhhHHHHHhh
Confidence 34467889999988 77777766651221 111222 3588999998988 6666 3666688999999988877654
No 432
>PLN02320 seryl-tRNA synthetase
Probab=28.61 E-value=2e+02 Score=30.34 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 192 SVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
.+..-+..|-.+|..+|........-+..+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 433
>PLN03223 Polycystin cation channel protein; Provisional
Probab=28.48 E-value=2.3e+02 Score=33.93 Aligned_cols=91 Identities=26% Similarity=0.374 Sum_probs=57.5
Q ss_pred hhhhHH--HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 021850 122 TRRSLS--DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (306)
Q Consensus 122 TKRnms--nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~ 199 (306)
.||.|. ||-+.++.-|+||. +|+.+..-|...|+.+.-++|-++.+++.-..+= .+ ..-|..-...++.-=..
T Consensus 767 ~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~-~~---~~~i~~g~~d~~~~~~~ 841 (1634)
T PLN03223 767 NRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADN-SL---ETLINAGFTDIKAGQAA 841 (1634)
T ss_pred hhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccc-hH---HHHHHhchhHHHhHHHH
Confidence 366665 66666777777775 4677888899999988888877766665433221 00 01122223334444456
Q ss_pred HHHHHHHHhhhhhhHhHH
Q 021850 200 LESKLIEIEGKQDITTLG 217 (306)
Q Consensus 200 Le~Ki~~ie~kQd~tn~G 217 (306)
||.||++|-+||+.+...
T Consensus 842 ~~~~~~~il~kq~~al~~ 859 (1634)
T PLN03223 842 LEAKLDEILGKQQQALAA 859 (1634)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 778999998888876543
No 434
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.41 E-value=1.6e+02 Score=27.12 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=9.7
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHH
Q 021850 174 EEVTILRGRSKLIGDEFQSVRDIV 197 (306)
Q Consensus 174 ~eV~~v~~dls~ig~Di~~v~~~V 197 (306)
+++++++.+++.+...++.+.+.|
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444333
No 435
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=28.38 E-value=4.5e+02 Score=23.80 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
|-.|++.|.+-+..|
T Consensus 16 Le~~Lk~l~~~~~~l 30 (216)
T cd07627 16 LESQLKQLYKSLELV 30 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666555555
No 436
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.33 E-value=4.7e+02 Score=23.96 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHH---HHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik---~eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
+|..||+.|=.-.+++..+.+..+ .++.+...........+..+...+..|...
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 466666665555444444433322 233333222333334444444444444433
No 437
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=28.25 E-value=3.9e+02 Score=25.59 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=44.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~-eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
..|-.+...+...|+.|...-+-+...+.... .+.+.+++...++.+++.+..+.++..+++++.|=+-..++-
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~i 254 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLI 254 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444444443333 556666777777777777777777777777777655544443
No 438
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=28.23 E-value=5.5e+02 Score=28.11 Aligned_cols=83 Identities=12% Similarity=0.260 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhc-----------hhhhhhHHHHHHHHHHhHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-----------SKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d-----------ls~ig~Di~~v~~~V~~Le~K 203 (306)
++.-..-.-|.+.+..+..++..+++|++......+.|+++.++.+.. +.-|=.|++.=++.+..||..
T Consensus 178 q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e 257 (629)
T KOG0963|consen 178 QEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLERE 257 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555566666666666666666666666666555555444 555666777777777777777
Q ss_pred HHHHhhhhhhHhHH
Q 021850 204 LIEIEGKQDITTLG 217 (306)
Q Consensus 204 i~~ie~kQd~tn~G 217 (306)
+..+...=.-+|++
T Consensus 258 ~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 258 VEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHhhhhh
Confidence 77665544444443
No 439
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=28.22 E-value=92 Score=25.12 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
+|+..+| .++++||.|-+|+|.-++-.
T Consensus 15 ~dfne~~-------kRLdeieekvef~~~Ev~Qr 41 (75)
T COG4064 15 DDFNEIH-------KRLDEIEEKVEFVNGEVYQR 41 (75)
T ss_pred HHHHHHH-------HHHHHHHHHHHhhHHHHHHH
Confidence 4666666 67777777777887765544
No 440
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.20 E-value=2.6e+02 Score=28.08 Aligned_cols=23 Identities=9% Similarity=0.328 Sum_probs=9.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQ 150 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkh 150 (306)
+..+.+.+++++..+.+...++.
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333
No 441
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=28.04 E-value=3.6e+02 Score=25.87 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHH
Q 021850 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (306)
Q Consensus 189 Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~ 226 (306)
-...+...++..+.++..++....-+..-...+|+|..
T Consensus 310 f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfg 347 (370)
T PF02181_consen 310 FKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFG 347 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46778888899999999999999999999999999883
No 442
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.00 E-value=6.3e+02 Score=28.27 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=49.7
Q ss_pred ccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH---------HHHHHHHHHhhhc
Q 021850 112 GWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS---------QATQEEVTILRGR 182 (306)
Q Consensus 112 Gws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis---------~~ik~eV~~v~~d 182 (306)
.-.|||=||-| -+-+-+.++.|++.+...|+..+++|-+.. +++..+-.+..+ ...+..|.++++.
T Consensus 55 n~~fSv~~~tS---as~~s~~ia~q~~~L~q~lr~ldrqLh~qv--~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~ 129 (797)
T KOG2211|consen 55 NTLFSVQMMTS---ASKESNRIATQCDDLTQKLRELDRQLHAQV--LKRHMALLAQATEELFEDLELRSLLVKVAELQSE 129 (797)
T ss_pred cchhhhhhHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44577777533 233455678888888888888888876543 233322222222 2345567777777
Q ss_pred hhhhhhHHHHHHHHHHh
Q 021850 183 SKLIGDEFQSVRDIVQT 199 (306)
Q Consensus 183 ls~ig~Di~~v~~~V~~ 199 (306)
+.+|..|++.....++.
T Consensus 130 i~riknd~~epyk~i~~ 146 (797)
T KOG2211|consen 130 IKRIKNDNKEPYKIIWL 146 (797)
T ss_pred HHHHHHhhhhHHHHHHH
Confidence 77777777766655443
No 443
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.95 E-value=3.3e+02 Score=27.27 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHH---HHHHHHHHHHHHhhhhhhhh-----------------HHHHHHHHHHHHH
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVY---SSISAAQRQLSSKITSVDRD-----------------VNKIVEISQATQE 174 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs---~sL~~tKkhLsqRId~vD~k-----------------LDeq~eis~~ik~ 174 (306)
+.+++.+...=..++++.+.+-|...- +.+.+.+.-...=|+..++- ++.+.++.++-++
T Consensus 195 ~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe 274 (320)
T TIGR01834 195 MADYQLLEADIGYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQE 274 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhchhh-hhhHHHHHHHHHHhHHHHHHHHh
Q 021850 175 EVTILRGRSKL-IGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 175 eV~~v~~dls~-ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
.+.+.-..+-- .+.||+.+|+.+..||.++.+++
T Consensus 275 ~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~ 309 (320)
T TIGR01834 275 IVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLK 309 (320)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 444
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=27.78 E-value=2.1e+02 Score=23.25 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=6.0
Q ss_pred hhhhhHHHHHHHHhh
Q 021850 121 ATRRSLSDACNSVAR 135 (306)
Q Consensus 121 VTKRnmsnAv~svtK 135 (306)
+.+.++.+.++...+
T Consensus 29 a~~~~v~~~~~~f~~ 43 (113)
T PF02520_consen 29 AEKYGVQDQYNEFKA 43 (113)
T ss_pred HHHCCcHHHHHHHHH
Confidence 444444444333333
No 445
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.75 E-value=8e+02 Score=26.51 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHH
Q 021850 145 SAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq 165 (306)
..=|+|...||..|..+|-+.
T Consensus 42 ~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 42 KEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666443
No 446
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=27.73 E-value=3.2e+02 Score=23.61 Aligned_cols=17 Identities=6% Similarity=0.270 Sum_probs=7.5
Q ss_pred hhhhhHHHHHHHHHHhH
Q 021850 184 KLIGDEFQSVRDIVQTL 200 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~L 200 (306)
++..+|++..+..+..+
T Consensus 93 ~~l~~ei~~~~~~~sd~ 109 (115)
T COG4980 93 ERLKSEIEDLQEAISDE 109 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 447
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.69 E-value=4.8e+02 Score=23.93 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=32.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRD--VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~k--LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.+|++.-..+....+++.+.|+.|..+ ..+. ....++..+...-...-...-.+...+..||..|.++..
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~-----~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQE-----EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555666655442 1111 122233333333333333344455555556655555443
No 448
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.60 E-value=5.8e+02 Score=29.26 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH--------HHHhhhch---hhhhhHHHHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--------VTILRGRS---KLIGDEFQSVRDI 196 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~e--------V~~v~~dl---s~ig~Di~~v~~~ 196 (306)
...+.+..++++..+.+...+.++..+++.++..+..++.-.+.+.++ +.++..++ ..+..+++.++..
T Consensus 288 ~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~ 367 (1201)
T PF12128_consen 288 EELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQ 367 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333444444444444444455555555555554444443333333221 22222222 2344444555555
Q ss_pred HHhHHHHHHHHhh
Q 021850 197 VQTLESKLIEIEG 209 (306)
Q Consensus 197 V~~Le~Ki~~ie~ 209 (306)
...|.++...|+.
T Consensus 368 ~~~Lt~~~~di~~ 380 (1201)
T PF12128_consen 368 LDLLTSKHQDIES 380 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 449
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.44 E-value=5.5e+02 Score=24.50 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=39.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----------HHHHHHhhhchhhhhhHHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT----------QEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~i----------k~eV~~v~~dls~ig~Di~~v~ 194 (306)
.|+++.+.++..+|..+.++..-=+++.. ++-.-|.+..-.+..+ +-++...++.+..-..|=+.+.
T Consensus 107 ~L~~~L~~~a~~~d~~~~~~~~~~~~l~~---~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~ 183 (243)
T cd07666 107 ELADSLKGMASCIDRCCKATDKRMKGLSE---QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLK 183 (243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 36666666666666555555543333332 3333333333333333 3344444444444455555666
Q ss_pred HHHHhHHHHHHH
Q 021850 195 DIVQTLESKLIE 206 (306)
Q Consensus 195 ~~V~~Le~Ki~~ 206 (306)
.-|+.||.|++.
T Consensus 184 ~ev~~~e~kve~ 195 (243)
T cd07666 184 EEIEKLEDKVEC 195 (243)
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
No 450
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=27.42 E-value=4.2e+02 Score=23.19 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021850 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (306)
+.+.|....+.+..||+.|...|++....+..+.+-|..+++.+.
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~ 67 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLR 67 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 567788889999999999999999988888888777776665543
No 451
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=27.36 E-value=3.8e+02 Score=24.54 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeCCCCCCC-Cceehhh-hhhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhh
Q 021850 59 NDLLAEVSSVQQELSHVPRSVIIETSSGSGTG-AKKYGVI-VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQ 136 (306)
Q Consensus 59 ~~L~aQV~~LaqElr~LsR~iTVvn~~~SgsG-g~~~~~i-vviGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKq 136 (306)
.+...+|..|.+.|+.|.+.+..+... ... +..++-+ .++..+|=|= -..+|++|++.++..
T Consensus 15 ~~~k~~i~~Le~~Lk~l~~~~e~lv~~--r~ela~~~~~f~~s~~~L~~~E--------------~~~~Ls~al~~la~~ 78 (224)
T cd07623 15 EEKQQQIENLDQQLRKLHASVESLVNH--RKELALNTGSFAKSAAMLSNCE--------------EHTSLSRALSQLAEV 78 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc--------------cchhHHHHHHHHHHH
Confidence 336777888888888874433333321 011 0111111 1233333221 123566666666655
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---HHhhhchhhhhhHHHHHHHHHHhH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV---TILRGRSKLIGDEFQSVRDIVQTL 200 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV---~~v~~dls~ig~Di~~v~~~V~~L 200 (306)
-+.++..... +-.+=...+.+-|++-..+...+++-. ..+-....+...++...+..+..|
T Consensus 79 ~~ki~~~~~~---qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl 142 (224)
T cd07623 79 EEKIEQLHGE---QADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKL 142 (224)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554433 233334455666666666666666433 233334445555666666553333
No 452
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=27.21 E-value=2.8e+02 Score=20.96 Aligned_cols=58 Identities=9% Similarity=0.275 Sum_probs=38.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
++.+.+||+.+-.+|+.-..+-+...+=+.....+-.. .+...++.....-..||+.+
T Consensus 4 ~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~--~~~~~~~~~l~es~~ki~~L 61 (72)
T cd00089 4 RSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK--KLLAEAEQMLRESKQKLELL 61 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999888777777776644333332211 46667776666666666644
No 453
>PHA03332 membrane glycoprotein; Provisional
Probab=27.10 E-value=2.5e+02 Score=32.70 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=4.9
Q ss_pred HHHHHHHHHh
Q 021850 64 EVSSVQQELS 73 (306)
Q Consensus 64 QV~~LaqElr 73 (306)
++.-|-+|..
T Consensus 808 si~gL~~eFe 817 (1328)
T PHA03332 808 SIAGLLLEFE 817 (1328)
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 454
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.04 E-value=8e+02 Score=28.70 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqR---Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
+-.-+..-.++|..+.++|..+++.+..+ |+.+-..|.+...=......+...++..+..+.++...++...+....
T Consensus 669 ~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~ 748 (1200)
T KOG0964|consen 669 LLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGK 748 (1200)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Confidence 33444555678888899999988876443 444444443333333333444555555555566666666666555555
Q ss_pred HHHHHhhhhhhHhHHHHH
Q 021850 203 KLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 203 Ki~~ie~kQd~tn~GV~~ 220 (306)
+|..+...-...-.+-.+
T Consensus 749 ~Le~i~~~l~~~~~~~~~ 766 (1200)
T KOG0964|consen 749 ELEEIKTSLHKLESQSNY 766 (1200)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555544444444333
No 455
>PRK04654 sec-independent translocase; Provisional
Probab=27.02 E-value=5.6e+02 Score=24.45 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId 156 (306)
+.|=.+...+++-+..+-.....+|.++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777888777777777777777766543
No 456
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=26.74 E-value=3.2e+02 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQ 170 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~ 170 (306)
.|..+..-|.+|..+++.+++++.+.++
T Consensus 31 ~Lk~~~~~L~krq~~Le~kIe~e~~~Ak 58 (191)
T PTZ00446 31 KNREAIDALEKKQVQVEKKIKQLEIEAK 58 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888888777765
No 457
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.71 E-value=3.9e+02 Score=28.70 Aligned_cols=164 Identities=10% Similarity=0.124 Sum_probs=80.5
Q ss_pred HHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHH--HhcC-CCceEEEeCCCCCCCCceehhhh-hhhhheeeeEEeccc
Q 021850 38 LKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQE--LSHV-PRSVIIETSSGSGTGAKKYGVIV-VIVAVGYGYVWWKGW 113 (306)
Q Consensus 38 lk~v~k~~k~~d~~~~~s~~~~~L~aQV~~LaqE--lr~L-sR~iTVvn~~~SgsGg~~~~~iv-viGavGYgYmwWKGw 113 (306)
+++-+.-+.+-++.++ .+..|..+-++|.+= |.+. ..-+..+++. +...+.+..+- +...+.+ .-
T Consensus 190 L~fq~~Ele~~~l~~g---E~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge--~~~~~~~~~l~~a~~~l~~------~~ 258 (557)
T COG0497 190 LQFQLEELEELNLQPG---EDEELEEERKRLSNSEKLAEAIQNALELLSGE--DDTVSALSLLGRALEALED------LS 258 (557)
T ss_pred HHHHHHHHHhcCCCCc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHHHH------hh
Confidence 4444444444444444 123376666666542 2222 4445566654 22222344432 3444432 01
Q ss_pred CCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 021850 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (306)
Q Consensus 114 s~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsq---RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di 190 (306)
.+.. .=+.+.+.+++.--+|+.++..|...-..+.- |++.+..+|.....+.+--.-.+.++-.-..++..++
T Consensus 259 ~~d~----~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el 334 (557)
T COG0497 259 EYDG----KLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEEL 334 (557)
T ss_pred ccCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1111 11334444444445556666666666666654 7888888887777776655444444444444444444
Q ss_pred HHHH---HHHHhHHHHHHHHhhhhhhHhH
Q 021850 191 QSVR---DIVQTLESKLIEIEGKQDITTL 216 (306)
Q Consensus 191 ~~v~---~~V~~Le~Ki~~ie~kQd~tn~ 216 (306)
+.+. .....||.++..+..+=..+..
T Consensus 335 ~~L~~~~~~~~~Le~~~~~l~~~~~~~A~ 363 (557)
T COG0497 335 AQLDNSEESLEALEKEVKKLKAELLEAAE 363 (557)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3355666666665554443333
No 458
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=26.68 E-value=4e+02 Score=24.69 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~ei 168 (306)
|.+-+.+|...-+.++ ||.||+=+|+..|.
T Consensus 113 Lk~g~~aLK~~~k~~~--idkVd~lmDei~E~ 142 (191)
T PTZ00446 113 LSYAANTHKKLNNEIN--TQKVEKIIDTIQEN 142 (191)
T ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHH
Confidence 3333444444444442 56666655555443
No 459
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.65 E-value=6.5e+02 Score=27.14 Aligned_cols=90 Identities=20% Similarity=0.314 Sum_probs=46.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhh-------hchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR-------GRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 133 vtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~-------~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
+-.+++.+++-+..|. ++++.|+.++.|-.+.+.=.--.+.-|+.++ +.++++..++.....-+..|-.+++
T Consensus 276 lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d 354 (622)
T COG5185 276 LKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNID 354 (622)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3445556666666664 4777777777775443322222222222222 3344444444444444444555555
Q ss_pred HHhh---hhhhHhHHHHHHHH
Q 021850 206 EIEG---KQDITTLGVKKLCD 223 (306)
Q Consensus 206 ~ie~---kQd~tn~GV~~LC~ 223 (306)
++.+ ||++..+-+....+
T Consensus 355 ~L~~q~~kq~Is~e~fe~mn~ 375 (622)
T COG5185 355 ELHKQLRKQGISTEQFELMNQ 375 (622)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 4443 77776666655543
No 460
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.58 E-value=1.8e+02 Score=21.41 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=12.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
++.+.|+.+..++++..+-.+..+.++..
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333444433
No 461
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.48 E-value=4.7e+02 Score=30.48 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsq 153 (306)
+-++++ ||+ -+++|..++..+-..|+-.+..+++
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~ 701 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQ 701 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556 444 5666666666666666666666554
No 462
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=26.42 E-value=1.6e+02 Score=22.30 Aligned_cols=35 Identities=11% Similarity=0.355 Sum_probs=24.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
..+-.+.+.+|+.|-.-=.+++.|||.|...+.+.
T Consensus 13 ~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 13 QQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455556788888888888889999888887654
No 463
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.37 E-value=1.5e+02 Score=22.54 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=34.4
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
||-.+..++-+|.-+.--. +....++.--+.|||.-|..+|.+...=.+..+.++..
T Consensus 1 M~~k~~~la~~~~L~~~~~---~~~a~a~~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 1 MKIKKLALAVAILLASSAC---SASAQAAPLTIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CcccHHHHHHHHHHHHHHH---HHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444433 22223344458899999999998887777777666543
No 464
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=26.37 E-value=5e+02 Score=23.70 Aligned_cols=80 Identities=10% Similarity=0.219 Sum_probs=41.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhH-----HHHHHHHHHHHHHHHHhhhchhhhhhHH----HHHHHHHHhHHHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDV-----NKIVEISQATQEEVTILRGRSKLIGDEF----QSVRDIVQTLESKLI 205 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kL-----Deq~eis~~ik~eV~~v~~dls~ig~Di----~~v~~~V~~Le~Ki~ 205 (306)
++|..--..|..||.+|.+.|++-..-+ +.+.-.-...-..|+++...++.|..|= ..+++.-...+.=|.
T Consensus 7 ~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eFi~ 86 (157)
T PF04778_consen 7 KKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEFIN 86 (157)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4444444566677777777766654433 2222223344456777777777666553 334444444444444
Q ss_pred HHhhhhhhH
Q 021850 206 EIEGKQDIT 214 (306)
Q Consensus 206 ~ie~kQd~t 214 (306)
....+++++
T Consensus 87 ~~K~NpnY~ 95 (157)
T PF04778_consen 87 KNKNNPNYA 95 (157)
T ss_pred hccCCccHH
Confidence 444555555
No 465
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.33 E-value=19 Score=29.72 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=40.2
Q ss_pred eeeEEEecCccceeeecCCCccchhHHhHhHHHHHHHhhhcCCCCCC----CCchhHH--HHHHHHHHHHHHhcC----C
Q 021850 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPS----DRKLFND--LLAEVSSVQQELSHV----P 76 (306)
Q Consensus 7 Kv~ILvGAG~~GSVl~knGkLsD~~~~lsg~lk~v~k~~k~~d~~~~----~s~~~~~--L~aQV~~LaqElr~L----s 76 (306)
||+++.|+|++.|++++. +-++..+- |. .+- .+....++. .....|- +.-||+..-.+++.+ +
T Consensus 3 kILlvCg~G~STSlla~k--~k~~~~e~-gi-~~~---i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ 75 (104)
T PRK09590 3 KALIICAAGMSSSMMAKK--TTEYLKEQ-GK-DIE---VDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVG 75 (104)
T ss_pred EEEEECCCchHHHHHHHH--HHHHHHHC-CC-ceE---EEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcC
Confidence 799999999999988765 33333210 00 000 000000000 0112233 556999999999997 3
Q ss_pred CceEEEeCC
Q 021850 77 RSVIIETSS 85 (306)
Q Consensus 77 R~iTVvn~~ 85 (306)
-|+.+++..
T Consensus 76 ipv~~I~~~ 84 (104)
T PRK09590 76 KPVVQIPPQ 84 (104)
T ss_pred CCEEEeCHH
Confidence 477777654
No 466
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=26.30 E-value=20 Score=33.23 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.2
Q ss_pred eEEEecCccceeee
Q 021850 9 TFLVGAGILTSVLA 22 (306)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (306)
+++||||++|+.++
T Consensus 2 ViIvGaG~aGl~~A 15 (385)
T TIGR01988 2 IVIVGGGMVGLALA 15 (385)
T ss_pred EEEECCCHHHHHHH
Confidence 57899999998543
No 467
>PRK09303 adaptive-response sensory kinase; Validated
Probab=26.10 E-value=1.5e+02 Score=28.40 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhhchhhh
Q 021850 166 VEISQATQEEVTILRGRSKLI 186 (306)
Q Consensus 166 ~eis~~ik~eV~~v~~dls~i 186 (306)
..++-.+++-++.+..-++.+
T Consensus 156 ~~iaHeLrtPLt~i~~~~e~l 176 (380)
T PRK09303 156 AMLAHDLRTPLTAASLALETL 176 (380)
T ss_pred HHHhHhhcchHHHHHHHHHHH
Confidence 334445555555555444433
No 468
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=26.10 E-value=70 Score=25.97 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhhhHhHH
Q 021850 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~G 217 (306)
.|+..++ .|+++||+|-+|||.=
T Consensus 15 ~d~~~i~-------~rLD~iEeKVEftn~E 37 (77)
T PRK01026 15 KDFKEIQ-------KRLDEIEEKVEFTNAE 37 (77)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4556666 5666666666666653
No 469
>PF14627 DUF4453: Domain of unknown function (DUF4453)
Probab=26.06 E-value=47 Score=28.44 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcC--------------CCceEEEeCCCCCCCCceehhhhhhhhheeeeEEecccCCC
Q 021850 63 AEVSSVQQELSHV--------------PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLP 116 (306)
Q Consensus 63 aQV~~LaqElr~L--------------sR~iTVvn~~~SgsGg~~~~~ivviGavGYgYmwWKGws~S 116 (306)
-|--++|++|..| .-||++.-+- +.+.-..+.|.+--.|.|+|.=|+||++.
T Consensus 13 l~d~~~rr~L~~lPv~d~~esaC~Gw~G~pv~L~AG~--~~~t~~iG~I~~Gd~v~~~h~~~ggWsyv 78 (107)
T PF14627_consen 13 LEDLHLRRKLVDLPVRDEFESACIGWLGPPVPLRAGH--SMDTPVIGTIQPGDTVRYSHIPWGGWSYV 78 (107)
T ss_pred ccchhhhhhhhcccccCCcccccccccCCCcceeccC--CCCCceeeEecCCCEEEEeeecCCCeEEE
Confidence 3444566777776 2377777664 33334555566666789999999999873
No 470
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=26.00 E-value=6.6e+02 Score=24.95 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHhHHHHHH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls---~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
|-.--.++.+-++.+..+|..+-.+-++..+......+++.++..+.. .-+.++..+...++-||.+.-
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHH
Confidence 333445666777778888888888888888877778888777777776 457777777777777765544
No 471
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=25.87 E-value=21 Score=36.11 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=13.4
Q ss_pred eEEEecCccceeeec
Q 021850 9 TFLVGAGILTSVLAK 23 (306)
Q Consensus 9 ~ILvGAG~~GSVl~k 23 (306)
.|+||||+.|+|++.
T Consensus 4 ~lIVGaGlsG~V~A~ 18 (374)
T COG0562 4 YLIVGAGLSGAVIAE 18 (374)
T ss_pred EEEECCchhHHHHHH
Confidence 589999999999876
No 472
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=25.65 E-value=3e+02 Score=20.83 Aligned_cols=21 Identities=0% Similarity=0.175 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhh
Q 021850 136 QLEDVYSSISAAQRQLSSKIT 156 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId 156 (306)
++.++...|..-+++....+.
T Consensus 23 ~i~~~~~~L~~~i~~~~~eLr 43 (87)
T PF08700_consen 23 EIRQLENKLRQEIEEKDEELR 43 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 473
>PRK11020 hypothetical protein; Provisional
Probab=25.51 E-value=2.8e+02 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhH
Q 021850 191 QSVRDIVQTLESKLIEIEGKQDIT 214 (306)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQd~t 214 (306)
..+..-+..|+.+|.++-.+|.+-
T Consensus 34 ~qf~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 34 AQFEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667778888888877653
No 474
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=25.46 E-value=1.9e+02 Score=20.74 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 021850 145 SAAQRQLSSKITSVDRDVNKIVEISQA 171 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~eis~~ 171 (306)
...+..+..+++.++.++++..++...
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~ 61 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444433
No 475
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=25.45 E-value=5.6e+02 Score=23.88 Aligned_cols=97 Identities=13% Similarity=0.226 Sum_probs=45.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhh----hhhhhhHHH----HHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 133 VARQLEDVYSSISAAQRQLSSKI----TSVDRDVNK----IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 133 vtKqLeqVs~sL~~tKkhLsqRI----d~vD~kLDe----q~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
+.+++|.+-+.+..+=.-+..|= +.+++-+.+ ..+.+..+.+=|..+...++. ...+..+..-|+.+|...
T Consensus 85 L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~-~~~~~~i~~eI~~~E~e~ 163 (217)
T COG1392 85 LIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLES-ADRLLEIIKEIEALEHEC 163 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHh
Confidence 34455555555555544444443 233333322 223333333333333333333 233344444456666666
Q ss_pred HHHhh-------hhhhHh--HHHHHHHHHHHhhhc
Q 021850 205 IEIEG-------KQDITT--LGVKKLCDRARELEN 230 (306)
Q Consensus 205 ~~ie~-------kQd~tn--~GV~~LC~f~~~le~ 230 (306)
+.|+. +=+... ..+.++|++++.+++
T Consensus 164 D~i~~~l~k~Lf~~e~~~~~~~~~~~~~i~~~i~~ 198 (217)
T COG1392 164 DDIQRELLKKLFSLETEINPIDVIILKEIIEKIED 198 (217)
T ss_pred hHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 65554 222223 677788888876654
No 476
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=25.45 E-value=4.7e+02 Score=23.07 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhhhHHHHHH----------------------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021850 124 RSLSDACNSVARQLEDVYSSIS----------------------AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~----------------------~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (306)
+.+++++..++.-.+.+.+.+. ++|.=|.+|.... ..++...+-....+.+...+..
T Consensus 78 ~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~-~~~~~a~~~l~kkk~~~~kl~~ 156 (236)
T PF09325_consen 78 KSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKL-IEYQNAEKELQKKKAQLEKLKA 156 (236)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccc
Q ss_pred c-------hhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 182 R-------SKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 182 d-------ls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
. +.....++......+..++.+.+.|..+
T Consensus 157 ~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~ 192 (236)
T PF09325_consen 157 SGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISEN 192 (236)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.44 E-value=4.6e+02 Score=28.47 Aligned_cols=59 Identities=12% Similarity=0.301 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (306)
+.|..+-..-+.++.++.++++.|...++.+.++|+..-.++++..+=+..+-+++..+
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55777777777777788888888877777777777655555544444444444455433
No 478
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=25.37 E-value=1.5e+02 Score=30.92 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~ 174 (306)
..||+..+-+|+|+.-.. ++..||++-...++...-|-+..++
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n 159 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQN 159 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999886543 8888888888888887777666653
No 479
>PF01537 Herpes_glycop_D: Herpesvirus glycoprotein D/GG/GX domain; InterPro: IPR002896 Herpesviruses are dsDNA viruses with no RNA stage. This entry represents a conserved domain found in several Herpes viruses glycoproteins, including: Glycoprotein-D (gD or gIV), which is common to Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2), as well as Equid herpesvirus 1, Bovine herpesvirus 1 and Meleagrid herpesvirus 1 (MeHV-1). Glycoprotein-D has been found on the viral envelope and the plasma membrane of infected cells. gD immunisation can produce an immune response to bovine herpes virus (BHV-1). This response is stronger than that of the other major glycoproteins gB (gI) and gC (gIII) in BHV-1 [, , , ]. Glycoprotein G (gG), which is one of the seven external glycoproteins of Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) []. In the HHV-2 virus-infected cell, gG-2 is cleaved into a secreted amino-terminal portion (sgG-2) and a carboxy-terminal portion. The latter protein is further O-glycosylated, generating the cell membrane-associated mature gG-2 (mgG-2). The mgG-2 protein has widely been used as a prototype antigen for detection of type-specific antibodies against HHV-2 []. Glycoprotein GX (gX), which was initially identified in Suid herpesvirus 1 (Pseudorabies virus). ; GO: 0016021 integral to membrane; PDB: 3U82_A 1L2G_A 2C3A_B 2C36_A 1JMA_A 3SKU_B.
Probab=25.36 E-value=27 Score=30.03 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=15.2
Q ss_pred eeeeEEecccCCCchhhhhhhh
Q 021850 104 GYGYVWWKGWKLPDMMFATRRS 125 (306)
Q Consensus 104 GYgYmwWKGws~SDlMyVTKRn 125 (306)
+|-+.||++ .+++++|+|.-+
T Consensus 71 ~~S~~~w~~-~~~~~a~v~~d~ 91 (124)
T PF01537_consen 71 GRSPTRWRG-GYSSYALVNDDE 91 (124)
T ss_dssp EEE--EES--SSTTTEEE-TTS
T ss_pred CcCcCeEec-cccceEEEcCCc
Confidence 789999999 999999999763
No 480
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=25.28 E-value=1.8e+02 Score=25.96 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
+.++|..+-..+. +.+......++|.++++.+..+|+...++-..|.++.
T Consensus 38 v~~~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 38 VKEAVHRLLPLLN-VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443322 3334445566677788888777777766665555554
No 481
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=25.28 E-value=2.6e+02 Score=23.79 Aligned_cols=15 Identities=7% Similarity=0.195 Sum_probs=6.4
Q ss_pred hhhhhhhhHHHHHHH
Q 021850 154 KITSVDRDVNKIVEI 168 (306)
Q Consensus 154 RId~vD~kLDeq~ei 168 (306)
++..++=.|++..++
T Consensus 52 ~lr~~GfsL~eI~~l 66 (131)
T cd04786 52 SAQQAGFSLDEIRQL 66 (131)
T ss_pred HHHHcCCCHHHHHHH
Confidence 333444444444443
No 482
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.27 E-value=6.6e+02 Score=24.67 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 134 tKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
.++.-+-++....-|.....+|.-....|+++.|=-++..+++.+++..+..+.+-+..++.--..|+..+..+..|..
T Consensus 181 a~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 181 AKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.25 E-value=4.9e+02 Score=26.97 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe 164 (306)
+.|..+-.+-.++++++.++++.|...++.+..+|+..-+++..
T Consensus 128 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ 171 (547)
T PRK08147 128 AARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINN 171 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666666666666666665444443333
No 484
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=25.24 E-value=6.1e+02 Score=24.28 Aligned_cols=93 Identities=13% Similarity=0.175 Sum_probs=61.7
Q ss_pred hhhhhhhhheeeeEEecc--------cCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 021850 95 GVIVVIVAVGYGYVWWKG--------WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (306)
Q Consensus 95 ~~ivviGavGYgYmwWKG--------ws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ 166 (306)
++++++|++..||+.=.| |.+|-+|-|-=-.+ ++.-++-.+..+-..+...++-+..+-.+..+-++...
T Consensus 2 Giv~~~~~v~~g~~l~Gg~~~~l~~~~~~~~~lIV~GGt~--ga~li~~p~~~i~~~~k~~~~~f~~~~~~~~~~i~~l~ 79 (254)
T PRK06743 2 GIIVGFAIVIAAIMLGGGGIKAFKNFLDVSSILIVIGGTT--ATIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFV 79 (254)
T ss_pred hHHHHHHHHHHHHHHcCCChhHHHHHhCHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345566666666665444 55666666654444 34456677788888888888888777777778888888
Q ss_pred HHHHHHHHH-HHHhhhchhhhhhH
Q 021850 167 EISQATQEE-VTILRGRSKLIGDE 189 (306)
Q Consensus 167 eis~~ik~e-V~~v~~dls~ig~D 189 (306)
+++.--|+| +-.+..+++++.++
T Consensus 80 ~la~~aRr~GlLaLE~~~~~~~d~ 103 (254)
T PRK06743 80 DFSKKSKKHGLLSLEVDGEQVDNP 103 (254)
T ss_pred HHHHHHHhcCHHHHHhhccCCccH
Confidence 888877765 55566566555443
No 485
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=25.24 E-value=1.5e+02 Score=26.14 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=28.7
Q ss_pred ecccCCCchhhhhhhh---HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 021850 110 WKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (306)
Q Consensus 110 WKGws~SDlMyVTKRn---msnAv~svtKqLeqVs~sL~~tKkhLsqRId 156 (306)
||--|+++|--||--. +.+..-=-.++|+.+-..|..-|..|..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~ 56 (151)
T PRK10778 7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVD 56 (151)
T ss_pred cccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777766 2222222235666666666666666655554
No 486
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=25.23 E-value=6.3e+02 Score=24.44 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
+|.+-...|.+-+..++.++ .+++....+-..+..+.+..+..++..+..-+..|..+|..
T Consensus 11 ~L~~Ep~~L~~~~~~l~~ql---~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~ 71 (338)
T PF04124_consen 11 SLFSEPQSLSEEIASLDAQL---QSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPE 71 (338)
T ss_pred HHHhhHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443 33344444444444444444444444444444444444443
No 487
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.16 E-value=5.4e+02 Score=23.60 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=26.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
|.+||......|.+..+-.....+++..++.-.+.+...+...+.....++.++.
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555554444444444444444444444444444444444444444443
No 488
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=25.07 E-value=2.4e+02 Score=19.53 Aligned_cols=25 Identities=8% Similarity=0.300 Sum_probs=11.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVT 177 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~ 177 (306)
+.|+++...+-++.++...|..+|.
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~ 36 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELE 36 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 489
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=24.89 E-value=2.6e+02 Score=19.92 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhh-----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~k-----LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
..+..+.+.+....+.|...-+.|...++.+... =+...+.-......+..+...+..+..-+.........-|
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~d 85 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNYEQAD 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 490
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=24.69 E-value=1.8e+02 Score=22.08 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHH--HHHHhhhhhhhhHH
Q 021850 129 ACNSVARQLEDVYSSISAAQR--QLSSKITSVDRDVN 163 (306)
Q Consensus 129 Av~svtKqLeqVs~sL~~tKk--hLsqRId~vD~kLD 163 (306)
|+=+++-.+.+.-........ ++.+||+.+..+||
T Consensus 53 aaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~~le 89 (89)
T PF05164_consen 53 AALNLADELLKLKRELDELEELERLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhC
No 491
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=55 Score=30.43 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH-----HHhhhhhhH---hHHHHHHHHHHHhhhcCCCcc
Q 021850 164 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI-----EIEGKQDIT---TLGVKKLCDRARELENGRPTE 235 (306)
Q Consensus 164 eq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~-----~ie~kQd~t---n~GV~~LC~f~~~le~~~~~~ 235 (306)
.|.+|.+.+.|+....+..+.+--.|+..+.+.+..||.+ . .++..+++. +.-+..|+....+++...-+.
T Consensus 60 ~~~~i~da~~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~-kae~k~~~e~re~~l~~~qae~~klv~iY~~Mkp~~aA~ 138 (192)
T COG3334 60 FCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKK-KAELKDLEEEREGILRSKQAEDGKLVKIYSKMKPDAAAA 138 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCChhhHHH
Q ss_pred cc-----ccCCCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccc
Q 021850 236 LV-----QSGSLHPLPLEPPSPSXXXXXXXIPMDLIRLTGRIVSRP 276 (306)
Q Consensus 236 ~~-----Q~~s~~p~~le~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 276 (306)
.+ |..... +-.-+|..+.-=-+|-.|..---||++|.++|
T Consensus 139 ~le~l~~e~Aa~I-l~~L~~r~~~~ILakMdPekAA~lt~~i~~~~ 183 (192)
T COG3334 139 ILENLPDEEAAAI-LMKLKPRKLGLILAKMDPEKAATLTELIASPP 183 (192)
T ss_pred HHHcCCHHHHHHH-HHhCChhHHHHHHHcCCHHHHHHHHHHHhcCC
No 492
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.53 E-value=2.5e+02 Score=28.37 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhh--hhh-hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITS--VDR-DVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~--vD~-kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
+++.+=.+.|++-+++++..|.. -+. ..++..+-.+.+++++.++...+..+..++..+
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=24.40 E-value=3.4e+02 Score=22.37 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhhh
Q 021850 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 229 (306)
Q Consensus 162 LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~le 229 (306)
|++.-.....|++++..+..+++.|..-...+-.....-+.-=..++.-++-++.-...+..-++.++
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELE 68 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.32 E-value=3.5e+02 Score=21.12 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
..|..--++|..+-.....+++..+..+.+....+......++....-+..|+.++..-|
T Consensus 15 a~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 15 AQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 495
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=24.28 E-value=3.2e+02 Score=26.63 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH----------------HHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK----------------IVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe----------------q~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
+....|.|||=-+.|.+..++|.+-++.+..++.. ..-++..+..++.-+..|+++|-..+..+
T Consensus 125 vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~ 204 (254)
T KOG2196|consen 125 VKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTM 204 (254)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Q ss_pred HHHHHh---------------------------HHHHHHHHhhhhh
Q 021850 194 RDIVQT---------------------------LESKLIEIEGKQD 212 (306)
Q Consensus 194 ~~~V~~---------------------------Le~Ki~~ie~kQd 212 (306)
...+.. ||.|++.|-..++
T Consensus 205 ~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K~~~ 250 (254)
T KOG2196|consen 205 SKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKKLKD 250 (254)
T ss_pred cCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
No 496
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=24.27 E-value=4e+02 Score=21.85 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t 214 (306)
..+++..+.+..-++.+..+=..++.=.+.-.++...-..+...+...++.+...-+.++..+..-..+|...-....+-
T Consensus 33 ~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~ 112 (213)
T cd00176 33 ESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFF 112 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHhhhc
Q 021850 215 TLGVKKLCDRARELEN 230 (306)
Q Consensus 215 n~GV~~LC~f~~~le~ 230 (306)
..-.. ++.++...+.
T Consensus 113 ~~~~~-l~~wl~~~e~ 127 (213)
T cd00176 113 RDADD-LEQWLEEKEA 127 (213)
T ss_pred HHHHH-HHHHHHHHHH
No 497
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.23 E-value=2.4e+02 Score=27.85 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH-HHhHHHHHHHH
Q 021850 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-VQTLESKLIEI 207 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~-V~~Le~Ki~~i 207 (306)
+-..|..+|.+|..-|.+-..+.-.-..++++++.| .+-..+++..|.+ |+.|-.|+.+.
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~ 286 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEES 286 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHH
No 498
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.20 E-value=2.6e+02 Score=24.40 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 158 VDRDV-NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 158 vD~kL-Deq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
..+.+ .|..|..+..++.|+.+++-.=.|+.||..=++++.++++..++..+.=--|-.-+.-+.+
T Consensus 26 ~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar 92 (118)
T KOG3385|consen 26 HLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMAR 92 (118)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHh
No 499
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.20 E-value=3.5e+02 Score=29.54 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
+.|++.-...-....|++..-++.|...|.+|-..|-.-.|-....+.|+.+++.-..+-..|.+.+...+..|-.|=..
T Consensus 526 ar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~ 605 (697)
T PF09726_consen 526 ARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQH 605 (697)
T ss_pred hhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred Hhhh
Q 021850 207 IEGK 210 (306)
Q Consensus 207 ie~k 210 (306)
+|.+
T Consensus 606 LE~s 609 (697)
T PF09726_consen 606 LENS 609 (697)
T ss_pred HHHh
No 500
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=24.08 E-value=3.3e+02 Score=23.27 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
..|..|++.=+..+....+..+.|.+++.+++..-..+..-+..++..-..|.-++-++-.++++
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ei 97 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEI 97 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!