Query 021850
Match_columns 306
No_of_seqs 67 out of 69
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 94.1 0.097 3.3E-06 41.6 5.9 77 120-208 8-84 (85)
2 2no2_A HIP-I, huntingtin-inter 91.7 2 6.8E-05 34.8 10.6 79 131-209 11-96 (107)
3 2zdi_C Prefoldin subunit alpha 87.8 1.4 4.8E-05 36.5 7.0 55 99-184 82-136 (151)
4 3mq9_A Bone marrow stromal ant 87.2 8.7 0.0003 36.2 12.9 79 125-204 356-434 (471)
5 3g67_A Methyl-accepting chemot 86.9 5.5 0.00019 35.4 10.7 35 127-161 6-40 (213)
6 3oja_A Leucine-rich immune mol 86.8 3.3 0.00011 39.3 9.7 67 158-224 412-478 (487)
7 3g67_A Methyl-accepting chemot 86.2 9.8 0.00034 33.8 11.9 63 132-194 4-66 (213)
8 1m1j_B Fibrinogen beta chain; 86.0 5.3 0.00018 39.7 11.1 96 115-210 87-190 (464)
9 1deq_A Fibrinogen (alpha chain 85.4 6 0.0002 38.8 10.8 100 115-214 54-160 (390)
10 3tnu_B Keratin, type II cytosk 84.3 2.4 8.1E-05 34.6 6.5 51 153-206 43-93 (129)
11 3na7_A HP0958; flagellar bioge 83.6 5.2 0.00018 35.7 9.0 57 155-211 62-120 (256)
12 3ghg_A Fibrinogen alpha chain; 83.6 11 0.00037 38.5 12.1 99 115-213 51-156 (562)
13 3trt_A Vimentin; cytoskeleton, 83.5 7.8 0.00027 28.6 8.6 69 125-193 6-75 (77)
14 3tnu_A Keratin, type I cytoske 82.4 2.5 8.5E-05 34.6 5.9 70 135-207 24-96 (131)
15 3zx6_A HAMP, methyl-accepting 80.0 37 0.0013 31.2 14.0 17 215-231 282-298 (341)
16 4aj5_A SKA1, spindle and kinet 78.9 13 0.00044 29.8 8.7 44 179-226 35-78 (91)
17 3oja_B Anopheles plasmodium-re 78.6 38 0.0013 32.5 13.7 34 126-159 461-494 (597)
18 1c1g_A Tropomyosin; contractIl 78.5 26 0.00088 28.6 13.7 35 173-207 68-102 (284)
19 4abx_A DNA repair protein RECN 78.2 8.4 0.00029 32.5 8.0 92 114-209 67-164 (175)
20 3onj_A T-snare VTI1; helix, HA 78.1 7.6 0.00026 30.4 7.2 53 124-179 8-60 (97)
21 4dnd_A Syntaxin-10, SYN10; str 78.0 5.3 0.00018 33.2 6.6 58 122-181 68-126 (130)
22 3mq9_A Bone marrow stromal ant 77.6 20 0.00068 33.7 11.2 42 124-165 369-416 (471)
23 3a7p_A Autophagy protein 16; c 77.0 27 0.00093 30.2 10.8 72 129-215 59-131 (152)
24 3hnw_A Uncharacterized protein 76.9 20 0.00069 29.9 9.8 65 149-213 71-135 (138)
25 3gwk_C SAG1039, putative uncha 76.6 20 0.0007 26.4 10.2 76 130-205 13-93 (98)
26 2qyw_A Vesicle transport throu 76.2 5.6 0.00019 31.5 6.0 57 121-180 19-76 (102)
27 3okq_A BUD site selection prot 75.8 6.5 0.00022 33.7 6.6 86 143-228 11-116 (141)
28 1vcs_A Vesicle transport throu 75.7 3 0.0001 33.0 4.2 61 117-180 5-65 (102)
29 2yo3_A General control protein 75.7 4.8 0.00016 37.7 6.2 41 136-176 199-239 (268)
30 2akf_A Coronin-1A; coiled coil 75.6 3.4 0.00012 27.2 3.7 28 184-211 2-29 (32)
31 3c9i_A Tail needle protein GP2 75.2 8.2 0.00028 35.4 7.4 59 152-210 83-141 (242)
32 2w83_C C-JUN-amino-terminal ki 75.1 12 0.0004 29.2 7.3 64 125-209 6-72 (77)
33 1m1j_A Fibrinogen alpha subuni 74.3 26 0.00087 35.3 11.3 102 111-212 48-156 (491)
34 2jee_A YIIU; FTSZ, septum, coi 73.8 24 0.00084 27.5 8.9 67 155-221 8-74 (81)
35 3na7_A HP0958; flagellar bioge 73.5 18 0.00063 32.1 9.3 70 140-209 19-88 (256)
36 3zx6_A HAMP, methyl-accepting 72.7 58 0.002 29.9 13.8 9 61-69 11-19 (341)
37 1m1j_B Fibrinogen beta chain; 72.6 36 0.0012 33.9 12.0 43 141-183 88-130 (464)
38 1gl2_D Syntaxin 8, vesicle tra 72.5 8.3 0.00028 27.8 5.6 45 153-197 9-53 (65)
39 1n7s_D SNAP-25A; neuronal snar 72.3 20 0.00069 25.7 7.7 45 150-194 7-51 (66)
40 1deq_A Fibrinogen (alpha chain 72.1 12 0.00041 36.7 8.3 66 126-191 93-158 (390)
41 1fxk_C Protein (prefoldin); ar 72.1 6.4 0.00022 31.6 5.5 55 99-184 72-126 (133)
42 3cvf_A Homer-3, homer protein 71.7 7.8 0.00027 30.2 5.6 27 150-176 24-50 (79)
43 1ic2_A Tropomyosin alpha chain 71.2 25 0.00086 26.5 8.3 55 152-206 19-73 (81)
44 3o0z_A RHO-associated protein 70.7 43 0.0015 29.3 10.7 36 173-208 103-138 (168)
45 2l5g_B Putative uncharacterize 69.8 3.2 0.00011 29.1 2.7 21 147-167 3-23 (42)
46 2nps_D Syntaxin-6; vesicle fus 69.8 17 0.00057 27.5 7.0 40 184-223 36-75 (82)
47 3u59_A Tropomyosin beta chain; 69.7 38 0.0013 26.4 9.8 85 145-229 15-99 (101)
48 3u59_A Tropomyosin beta chain; 69.3 38 0.0013 26.4 11.8 47 151-197 49-95 (101)
49 3htk_A Structural maintenance 69.1 16 0.00054 25.6 6.4 47 158-204 10-56 (60)
50 1sfc_D Protein (SNAP-25B), pro 69.0 25 0.00086 26.8 8.0 34 186-219 48-81 (87)
51 1l8d_A DNA double-strand break 68.1 39 0.0013 26.0 9.7 36 129-164 4-42 (112)
52 1m1j_C Fibrinogen gamma chain; 67.0 42 0.0014 32.8 10.9 40 167-206 84-123 (409)
53 3u1c_A Tropomyosin alpha-1 cha 66.9 44 0.0015 26.2 10.1 81 148-228 18-98 (101)
54 4ioe_A Secreted protein ESXB; 65.8 35 0.0012 24.7 9.7 31 129-159 13-43 (93)
55 2xzr_A Immunoglobulin-binding 65.4 55 0.0019 26.8 9.9 70 125-194 31-103 (114)
56 3zbh_A ESXA; unknown function, 65.2 37 0.0013 24.7 10.8 27 132-158 16-42 (99)
57 3m0a_A TNF receptor-associated 64.8 33 0.0011 24.6 7.5 58 151-208 3-60 (66)
58 3ghg_A Fibrinogen alpha chain; 64.2 40 0.0014 34.5 10.3 72 140-212 51-127 (562)
59 1sfc_D Protein (SNAP-25B), pro 63.5 32 0.0011 26.3 7.6 60 149-208 25-84 (87)
60 1ic2_A Tropomyosin alpha chain 62.3 47 0.0016 24.9 9.3 65 151-215 4-68 (81)
61 3swy_A Cyclic nucleotide-gated 61.8 13 0.00045 26.2 4.6 36 126-161 10-45 (46)
62 4ioe_A Secreted protein ESXB; 61.6 43 0.0015 24.2 8.8 31 135-165 12-42 (93)
63 2xdj_A Uncharacterized protein 61.0 35 0.0012 26.4 7.4 22 173-194 33-54 (83)
64 3efg_A Protein SLYX homolog; x 60.1 13 0.00044 28.4 4.8 54 149-209 10-63 (78)
65 2nps_D Syntaxin-6; vesicle fus 59.3 20 0.00069 27.0 5.7 58 152-209 18-75 (82)
66 2l3l_A Tubulin-specific chaper 59.2 40 0.0014 27.2 7.8 73 134-208 30-104 (111)
67 2dfs_A Myosin-5A; myosin-V, in 58.6 64 0.0022 34.9 11.4 25 151-175 982-1006(1080)
68 2jee_A YIIU; FTSZ, septum, coi 58.4 57 0.0019 25.5 8.2 53 154-206 28-80 (81)
69 3htk_A Structural maintenance 57.6 36 0.0012 23.8 6.5 45 137-181 10-54 (60)
70 1ses_A Seryl-tRNA synthetase; 57.6 21 0.00073 34.4 6.9 27 144-173 33-59 (421)
71 3kkj_A Amine oxidase, flavin-c 57.3 2 6.9E-05 33.0 -0.2 14 9-22 5-18 (336)
72 3cvf_A Homer-3, homer protein 57.2 39 0.0013 26.2 7.0 62 145-209 5-66 (79)
73 3ghg_C Fibrinogen gamma chain; 56.7 57 0.002 32.0 9.8 31 117-147 27-57 (411)
74 3swf_A CGMP-gated cation chann 56.6 26 0.00089 27.0 5.9 39 126-164 12-50 (74)
75 1gl2_D Syntaxin 8, vesicle tra 56.0 25 0.00087 25.1 5.5 46 174-219 16-61 (65)
76 2v71_A Nuclear distribution pr 55.6 1.1E+02 0.0038 27.1 13.0 84 136-219 46-133 (189)
77 3ghg_C Fibrinogen gamma chain; 55.3 1.4E+02 0.0047 29.3 12.2 91 140-230 25-133 (411)
78 4i0x_B ESAT-6-like protein MAB 54.6 67 0.0023 24.3 8.5 34 135-168 14-47 (103)
79 2dq0_A Seryl-tRNA synthetase; 53.9 21 0.00072 34.9 6.3 62 144-209 36-97 (455)
80 1wle_A Seryl-tRNA synthetase; 52.7 49 0.0017 32.9 8.8 29 143-174 74-102 (501)
81 1m1j_A Fibrinogen alpha subuni 52.2 62 0.0021 32.6 9.3 67 125-191 90-156 (491)
82 3zbh_A ESXA; unknown function, 51.8 65 0.0022 23.3 9.9 31 135-165 12-42 (99)
83 3ci9_A Heat shock factor-bindi 51.7 25 0.00085 25.0 4.7 40 126-165 4-43 (48)
84 3u1c_A Tropomyosin alpha-1 cha 49.0 94 0.0032 24.3 11.8 30 176-205 32-61 (101)
85 3fx7_A Putative uncharacterize 48.8 1E+02 0.0035 24.6 8.9 73 130-202 11-84 (94)
86 1qu7_A Methyl-accepting chemot 48.4 1.4E+02 0.0048 26.1 12.2 15 61-75 71-85 (227)
87 1m1j_C Fibrinogen gamma chain; 48.3 2E+02 0.0069 28.0 12.7 47 184-230 87-133 (409)
88 3cve_A Homer protein homolog 1 47.8 78 0.0027 24.1 7.3 36 149-184 17-52 (72)
89 1l4a_D S-SNAP25 fusion protein 47.6 56 0.0019 25.1 6.6 56 151-220 28-83 (87)
90 2nps_B Syntaxin 13, vesicle-as 47.0 80 0.0027 22.9 7.3 53 174-226 6-62 (71)
91 2b9c_A Striated-muscle alpha t 46.4 1.1E+02 0.0036 25.8 8.7 65 153-217 52-116 (147)
92 3fav_A ESAT-6-like protein ESX 46.1 80 0.0027 23.4 7.2 26 137-162 12-37 (101)
93 4dnd_A Syntaxin-10, SYN10; str 46.1 1.2E+02 0.0042 24.9 9.7 98 108-209 18-126 (130)
94 3fav_B ESAT-6, 6 kDa early sec 45.6 61 0.0021 23.6 6.4 25 138-162 11-35 (94)
95 4h22_A Leucine-rich repeat fli 45.6 81 0.0028 25.7 7.5 59 147-205 24-82 (103)
96 3gwk_C SAG1039, putative uncha 45.6 86 0.0029 22.9 9.4 32 135-166 11-42 (98)
97 2q6q_A Spindle POLE BODY compo 45.5 74 0.0025 24.5 6.8 57 148-204 5-61 (74)
98 1kmi_Z CHEZ, chemotaxis protei 45.0 1.1E+02 0.0037 27.1 8.9 42 198-239 126-170 (214)
99 3nmd_A CGMP dependent protein 45.0 57 0.002 25.0 6.1 50 130-180 15-67 (72)
100 2zqm_A Prefoldin beta subunit 44.7 40 0.0014 25.9 5.5 15 61-75 25-39 (117)
101 3zcc_A HAMP, osmolarity sensor 44.6 79 0.0027 22.2 7.8 24 166-189 65-88 (114)
102 3vkg_A Dynein heavy chain, cyt 44.6 1E+02 0.0034 37.6 10.9 98 125-222 2011-2118(3245)
103 3v86_A De novo design helix; c 44.4 17 0.00059 22.9 2.6 22 171-192 4-25 (27)
104 2v66_B Nuclear distribution pr 44.3 1.3E+02 0.0044 24.6 9.5 41 125-165 7-47 (111)
105 3a7p_A Autophagy protein 16; c 44.3 1.5E+02 0.0052 25.5 9.4 25 188-212 96-120 (152)
106 3s84_A Apolipoprotein A-IV; fo 43.9 1.1E+02 0.0037 27.9 9.0 25 166-190 208-232 (273)
107 2pnv_A Small conductance calci 43.6 31 0.0011 24.0 4.1 30 139-168 9-38 (43)
108 1i84_S Smooth muscle myosin he 43.3 43 0.0015 36.1 7.1 22 24-45 652-673 (1184)
109 2bez_C E2 glycoprotein; coiled 43.2 1.2E+02 0.0039 23.7 8.4 64 125-209 13-76 (77)
110 3hnw_A Uncharacterized protein 43.1 1.4E+02 0.0049 24.7 9.0 54 153-206 82-135 (138)
111 2xdj_A Uncharacterized protein 41.0 89 0.0031 24.1 6.8 54 152-212 5-58 (83)
112 1n7s_D SNAP-25A; neuronal snar 40.6 97 0.0033 22.0 7.4 51 170-220 13-63 (66)
113 3mts_A Histone-lysine N-methyl 40.5 19 0.00064 26.3 2.7 23 105-127 17-39 (64)
114 3haj_A Human pacsin2 F-BAR; pa 40.3 1.6E+02 0.0053 28.4 10.0 37 120-156 128-164 (486)
115 3qne_A Seryl-tRNA synthetase, 40.3 48 0.0016 33.0 6.5 63 144-210 38-100 (485)
116 3ol1_A Vimentin; structural ge 40.2 1.4E+02 0.0049 23.9 10.8 72 142-213 30-101 (119)
117 3m0d_C TNF receptor-associated 40.1 1.1E+02 0.0036 22.3 6.9 34 175-208 28-61 (65)
118 1i84_S Smooth muscle myosin he 39.1 90 0.0031 33.6 8.8 7 16-22 585-591 (1184)
119 3gp4_A Transcriptional regulat 38.7 1E+02 0.0035 25.1 7.3 28 148-175 83-110 (142)
120 2c5k_T Syntaxin TLG1, T-snare 38.5 87 0.003 24.5 6.5 24 186-209 66-89 (95)
121 3gp4_A Transcriptional regulat 38.4 1.6E+02 0.0054 23.9 8.6 27 183-209 90-116 (142)
122 1q08_A Zn(II)-responsive regul 38.0 73 0.0025 23.6 5.8 60 151-210 8-75 (99)
123 2c5k_T Syntaxin TLG1, T-snare 37.7 57 0.002 25.5 5.4 30 121-150 36-65 (95)
124 1jcd_A Major outer membrane li 37.5 65 0.0022 23.1 5.1 7 175-181 26-32 (52)
125 3trt_A Vimentin; cytoskeleton, 37.2 1.2E+02 0.004 22.1 8.4 37 172-208 40-76 (77)
126 1l4a_D S-SNAP25 fusion protein 36.5 83 0.0028 24.1 6.0 49 131-183 26-74 (87)
127 2vs0_A Virulence factor ESXA; 36.4 1.2E+02 0.004 21.8 9.1 26 137-162 11-36 (97)
128 3plt_A Sphingolipid long chain 36.1 2.5E+02 0.0087 25.6 11.5 84 127-214 61-150 (234)
129 1kmi_Z CHEZ, chemotaxis protei 36.0 2.3E+02 0.0078 25.0 11.2 22 186-207 145-166 (214)
130 2xz3_A Maltose ABC transporter 35.8 1.6E+02 0.0055 27.4 9.0 85 139-227 339-423 (463)
131 3vkg_A Dynein heavy chain, cyt 35.6 1.4E+02 0.0047 36.5 10.2 36 157-192 2018-2053(3245)
132 1fxk_A Prefoldin; archaeal pro 35.5 67 0.0023 24.3 5.3 15 61-75 20-34 (107)
133 2dq3_A Seryl-tRNA synthetase; 34.7 82 0.0028 30.3 7.0 64 144-211 35-98 (425)
134 2zqm_A Prefoldin beta subunit 34.6 99 0.0034 23.6 6.3 15 151-165 82-96 (117)
135 1fxk_A Prefoldin; archaeal pro 34.5 90 0.0031 23.5 5.9 14 125-138 62-75 (107)
136 3oz2_A Digeranylgeranylglycero 34.3 7.7 0.00026 33.7 -0.2 13 9-21 7-19 (397)
137 3ghg_B Fibrinogen beta chain; 34.2 2.7E+02 0.0091 27.8 10.6 35 115-149 82-116 (461)
138 2p22_A Suppressor protein STP2 34.1 82 0.0028 27.5 6.2 51 117-167 34-84 (174)
139 4hpq_C ATG17, KLTH0D15642P; au 33.9 3.4E+02 0.012 26.4 11.2 7 26-32 120-126 (413)
140 1j1d_B Troponin T, TNT; THIN f 33.6 74 0.0025 25.7 5.5 25 179-204 68-92 (106)
141 3ci9_A Heat shock factor-bindi 33.5 66 0.0023 22.7 4.6 38 125-162 6-47 (48)
142 1qu7_A Methyl-accepting chemot 33.0 2.5E+02 0.0084 24.5 11.5 13 63-75 56-68 (227)
143 2wrg_I Hemagglutinin HA2 chain 33.0 16 0.00053 33.3 1.5 47 121-167 36-89 (222)
144 1t3j_A Mitofusin 1; coiled coi 32.9 1.4E+02 0.0049 23.8 7.0 18 146-163 47-64 (96)
145 1xwj_B Talin, metavinculin; ce 32.8 26 0.0009 21.6 2.1 24 122-145 2-25 (26)
146 1mqm_B Hemagglutinin HA2 chain 32.7 12 0.00041 34.0 0.7 47 121-167 36-89 (221)
147 3f6n_A Virion-associated prote 32.4 87 0.003 26.4 5.8 44 162-205 4-50 (129)
148 1wyy_A E2 glycoprotein; membra 32.3 2.2E+02 0.0075 24.5 8.4 30 183-212 63-92 (149)
149 3hd7_A Vesicle-associated memb 32.3 1.7E+02 0.0058 22.4 9.4 23 136-158 6-28 (91)
150 2nrj_A HBL B protein; enteroto 32.1 2.6E+02 0.0089 26.1 9.8 55 147-204 117-171 (346)
151 3e7k_A TRPM7 channel; coiled-c 31.8 1.5E+02 0.0052 21.7 6.5 45 127-175 8-52 (56)
152 2i0m_A Phosphate transport sys 31.6 1.8E+02 0.0062 24.0 7.8 44 123-166 13-56 (216)
153 3oja_A Leucine-rich immune mol 31.6 62 0.0021 30.5 5.5 12 99-110 341-352 (487)
154 3kpe_A Fusion glycoprotein F0; 31.4 98 0.0033 22.3 5.2 40 159-198 3-42 (51)
155 1sum_B Phosphate transport sys 31.2 2.4E+02 0.0082 23.8 9.1 44 123-166 13-56 (235)
156 1jth_B Syntaxin 1A; coiled-coi 31.1 1.6E+02 0.0053 21.6 7.9 54 173-226 9-66 (77)
157 4ack_A TSSL; protein transport 30.9 1.5E+02 0.0052 26.3 7.4 64 163-227 8-71 (185)
158 4hb9_A Similarities with proba 30.9 9.6 0.00033 33.5 -0.2 12 9-20 4-15 (412)
159 3i2w_A Syndapin, LD46328P; EFC 30.4 2.2E+02 0.0076 24.8 8.6 38 121-158 114-151 (290)
160 3t37_A Probable dehydrogenase; 30.4 7.5 0.00026 36.5 -1.0 15 9-23 20-34 (526)
161 3uux_B Mitochondrial division 29.9 2.7E+02 0.0094 25.6 9.2 67 124-194 152-218 (242)
162 2ocy_A RAB guanine nucleotide 29.9 1.8E+02 0.006 25.0 7.5 35 151-185 113-147 (154)
163 1dip_A Delta-sleep-inducing pe 29.5 13 0.00045 29.0 0.3 24 186-209 13-36 (78)
164 1wt6_A Myotonin-protein kinase 29.4 2E+02 0.0068 22.5 7.0 23 170-192 27-49 (81)
165 2fxo_A Myosin heavy chain, car 29.3 2.2E+02 0.0076 22.8 8.7 66 128-193 58-123 (129)
166 3lss_A Seryl-tRNA synthetase; 29.2 1.6E+02 0.0053 29.3 8.0 28 143-173 41-68 (484)
167 3q0x_A Centriole protein; cent 28.4 1.2E+02 0.0041 27.5 6.6 49 145-193 163-211 (228)
168 1lwu_C Fibrinogen gamma chain; 28.2 83 0.0029 29.7 5.7 15 193-207 38-52 (323)
169 1fzc_A Fibrin; blood coagulati 28.2 57 0.002 25.9 3.8 28 149-176 3-30 (87)
170 1d7m_A Cortexillin I; coiled-c 28.0 2.4E+02 0.0081 22.7 7.4 29 126-154 2-33 (101)
171 3swk_A Vimentin; cytoskeleton, 27.7 2E+02 0.007 21.9 9.9 66 145-210 13-78 (86)
172 1go4_E MAD1 (mitotic arrest de 27.5 52 0.0018 26.5 3.5 37 172-208 10-46 (100)
173 1h2v_C 80 kDa nuclear CAP bind 26.8 2.8E+02 0.0095 28.9 9.8 28 126-153 622-649 (771)
174 3ghg_B Fibrinogen beta chain; 26.6 3.3E+02 0.011 27.2 9.8 11 65-75 19-29 (461)
175 3c9i_A Tail needle protein GP2 26.4 2.3E+02 0.0078 26.0 7.9 50 160-209 98-147 (242)
176 1gl2_B Syntaxin 7; membrane pr 26.0 1.6E+02 0.0055 21.0 5.7 44 174-217 9-52 (65)
177 1aq5_A Matrilin-1, CMP, cartil 25.8 1E+02 0.0035 21.9 4.4 10 151-160 35-44 (47)
178 2lch_A Protein OR38; structura 25.5 1.7E+02 0.0059 22.3 6.2 63 167-231 37-107 (113)
179 2vs0_A Virulence factor ESXA; 25.4 1.9E+02 0.0064 20.7 8.5 75 129-203 10-89 (97)
180 1e2b_A Enzyme IIB-cellobiose; 25.3 12 0.00042 29.2 -0.5 71 7-84 5-81 (106)
181 3gpv_A Transcriptional regulat 25.3 1.6E+02 0.0056 23.9 6.4 23 186-208 107-129 (148)
182 3abi_A Putative uncharacterize 25.2 13 0.00045 34.0 -0.4 16 7-23 18-33 (365)
183 2j69_A Bacterial dynamin-like 25.1 4.9E+02 0.017 26.2 11.0 84 121-210 596-684 (695)
184 3mov_A Lamin-B1; LMNB1, B-type 25.0 2.5E+02 0.0084 21.9 7.4 69 130-205 14-82 (95)
185 1tqg_A Chemotaxis protein CHEA 25.0 1.9E+02 0.0064 21.6 6.2 12 189-200 37-48 (105)
186 3ku3_B Hemagglutinin HA2 chain 24.8 62 0.0021 28.5 3.8 58 119-176 34-98 (174)
187 2d4y_A HAP1, flagellar HOOK-as 24.8 4.2E+02 0.014 25.1 10.0 42 121-162 64-105 (463)
188 1x8y_A Lamin A/C; structural p 24.5 2.3E+02 0.0079 21.4 7.6 63 136-205 11-73 (86)
189 4g2k_A General control protein 24.1 1.8E+02 0.006 24.5 6.2 29 175-203 22-50 (125)
190 1svf_B Protein (fusion glycopr 23.9 49 0.0017 22.2 2.4 22 133-154 10-31 (38)
191 2qyw_A Vesicle transport throu 23.9 2.4E+02 0.0081 22.0 6.8 61 134-194 14-76 (102)
192 3qne_A Seryl-tRNA synthetase, 23.6 3.8E+02 0.013 26.6 9.6 72 152-223 32-106 (485)
193 1fgj_A Hydroxylamine oxidoredu 23.5 24 0.00081 35.3 1.0 10 104-113 462-471 (546)
194 3hd7_B Syntaxin-1A; membrane p 23.5 2.7E+02 0.0092 21.8 7.3 63 155-217 23-85 (109)
195 2v66_B Nuclear distribution pr 23.5 3E+02 0.01 22.4 11.5 72 149-220 6-81 (111)
196 2d9u_A Chromobox protein homol 23.2 23 0.00078 26.3 0.7 27 101-128 24-50 (74)
197 3tul_A Cell invasion protein S 23.2 1.4E+02 0.0046 26.0 5.5 20 193-212 105-124 (158)
198 1t3j_A Mitofusin 1; coiled coi 22.8 2.5E+02 0.0086 22.4 6.7 20 139-158 29-48 (96)
199 2xzm_7 Plectin/S10 domain cont 22.8 47 0.0016 29.0 2.6 26 212-238 67-93 (162)
200 4f23_A Hemagglutinin, H16; sia 22.7 47 0.0016 33.6 3.0 48 119-166 368-422 (515)
201 2wr1_A Hemagglutinin; glycopro 22.6 29 0.00098 35.1 1.4 80 119-198 374-463 (509)
202 1x79_B RAB GTPase binding effe 22.6 3.2E+02 0.011 22.3 9.5 66 136-201 7-72 (112)
203 1yvv_A Amine oxidase, flavin-c 22.4 17 0.00058 31.3 -0.2 14 9-22 5-18 (336)
204 1t72_A Phosphate transport sys 22.4 3.3E+02 0.011 22.5 8.7 43 123-165 17-59 (227)
205 4dpv_Z Protein (parvovirus coa 22.4 26 0.0009 35.8 1.1 12 102-113 521-532 (584)
206 1mqs_A SLY1 protein, SLY1P; SM 22.4 3.6E+02 0.012 27.1 9.4 68 116-183 329-431 (671)
207 3l39_A Putative PHOU-like phos 22.1 3.8E+02 0.013 23.0 8.9 77 132-208 98-178 (227)
208 1wyy_A E2 glycoprotein; membra 21.9 38 0.0013 29.2 1.9 27 132-158 61-87 (149)
209 3abh_A Pacsin2, protein kinase 21.7 4.1E+02 0.014 23.3 9.7 31 124-154 139-169 (312)
210 3kpe_A Fusion glycoprotein F0; 21.7 1.3E+02 0.0045 21.6 4.4 31 125-155 15-45 (51)
211 2bbh_A Divalent cation transpo 21.7 1.5E+02 0.0052 25.5 5.8 66 134-201 174-239 (269)
212 3b5n_B Protein SSO1; snare com 21.7 2.3E+02 0.0078 20.4 6.7 51 173-223 9-63 (69)
213 4gde_A UDP-galactopyranose mut 21.7 25 0.00087 32.2 0.8 14 9-22 13-26 (513)
214 1mof_A Moloney murine leukemia 21.7 1.2E+02 0.0042 22.1 4.3 33 189-221 3-35 (55)
215 1urq_A M-tomosyn isoform; tran 21.6 2.4E+02 0.0081 20.5 6.3 31 130-160 6-36 (63)
216 1jig_A DLP-2; dodecamer, four- 21.4 43 0.0015 26.4 2.0 97 105-216 25-124 (146)
217 3p8q_A GP5, head protein; viru 21.3 20 0.00068 33.6 0.0 62 139-207 6-67 (385)
218 3hd7_B Syntaxin-1A; membrane p 21.1 3E+02 0.01 21.5 8.8 52 174-225 14-76 (109)
219 2v71_A Nuclear distribution pr 21.1 4.3E+02 0.015 23.3 14.1 92 137-228 33-135 (189)
220 1n7s_B Syntaxin 1A; neuronal s 21.1 2.3E+02 0.008 20.2 6.7 44 173-216 11-54 (68)
221 2kvm_A Chromobox protein homol 21.0 41 0.0014 24.8 1.7 27 101-128 27-53 (74)
222 2b9b_A Fusion glycoprotein F0; 21.0 1.9E+02 0.0064 29.2 6.9 22 132-153 427-448 (497)
223 2dfs_A Myosin-5A; myosin-V, in 20.8 7.2E+02 0.025 26.8 11.8 82 126-207 958-1049(1080)
224 2lw1_A ABC transporter ATP-bin 20.8 2.7E+02 0.0093 20.9 7.5 25 154-178 23-47 (89)
225 2d5k_A DPS, DPS family protein 20.7 52 0.0018 26.6 2.4 43 105-162 27-70 (156)
226 2fyz_B Fusion protein, fusion 20.6 65 0.0022 22.9 2.5 22 132-153 11-32 (48)
227 3nvo_A Zinc transport protein 20.6 64 0.0022 27.8 3.1 65 133-200 149-213 (264)
228 3efg_A Protein SLYX homolog; x 20.6 1.5E+02 0.0052 22.4 4.9 32 176-207 16-47 (78)
229 3okq_A BUD site selection prot 20.5 4E+02 0.014 22.7 11.3 36 119-154 12-47 (141)
230 2a01_A Apolipoprotein A-I; fou 20.5 4.4E+02 0.015 23.1 8.9 39 152-190 87-126 (243)
231 2bez_C E2 glycoprotein; coiled 20.4 1.5E+02 0.0051 23.1 4.7 24 125-148 20-43 (77)
232 2rft_B Influenza B hemagglutin 20.3 58 0.002 28.6 2.7 47 121-167 36-89 (176)
233 3lwe_A M-phase phosphoprotein 20.3 30 0.001 24.7 0.8 40 105-148 21-60 (62)
234 4dyl_A Tyrosine-protein kinase 20.2 5.4E+02 0.018 24.1 10.6 11 65-75 246-256 (406)
235 2z5i_A TM, general control pro 20.2 1.5E+02 0.0052 20.9 4.5 30 149-178 15-44 (52)
236 3h6p_C ESAT-6-like protein ESX 20.2 92 0.0031 22.9 3.5 19 176-194 62-80 (96)
237 3m91_A Proteasome-associated A 20.1 1.7E+02 0.0058 20.8 4.7 34 150-183 13-46 (51)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=94.10 E-value=0.097 Score=41.57 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=51.1
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 021850 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (306)
Q Consensus 120 yVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~ 199 (306)
|||++-+..-..+. +++..|.+|...+...+.-|-|-+..=-+++.+++.....-|.-++.|-....+
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998887642221 355556666666666665555555554566666666556667777888888888
Q ss_pred HHHHHHHHh
Q 021850 200 LESKLIEIE 208 (306)
Q Consensus 200 Le~Ki~~ie 208 (306)
+..+++.||
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 888998886
No 2
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=91.66 E-value=2 Score=34.80 Aligned_cols=79 Identities=10% Similarity=0.281 Sum_probs=59.9
Q ss_pred HHHhhhh---hhHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 131 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 131 ~svtKqL---eqVs~sL~~tKkhLsqRId~vD----~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
+.++||| .+..+.+..+|+.|..+|+.+. .|++++.+....++.++..=..++..+..+++.....=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566766 4667788999999999999865 56777888888888888887777777777777777766666677
Q ss_pred HHHHhh
Q 021850 204 LIEIEG 209 (306)
Q Consensus 204 i~~ie~ 209 (306)
++.++.
T Consensus 91 ~~~l~~ 96 (107)
T 2no2_A 91 FAELEK 96 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765554
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=87.84 E-value=1.4 Score=36.54 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=43.5
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
|+.-+|.||+=.+ ++..|+..|..||+.++..+++..+..+.++++++.
T Consensus 82 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~ 130 (151)
T 2zdi_C 82 AIVSVGSGYAVER-------------------------------SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGE 130 (151)
T ss_dssp EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999887 357888889999999998888888877777777766
Q ss_pred hhhchh
Q 021850 179 LRGRSK 184 (306)
Q Consensus 179 v~~dls 184 (306)
+...+.
T Consensus 131 ~~~~l~ 136 (151)
T 2zdi_C 131 VARKAQ 136 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.19 E-value=8.7 Score=36.18 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
-|.+++..+-..=..+-++|..+.+.+.+-|++.-.. .|+......++.++++++.++.++.-.-..-+++|-+|-..|
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAV-MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHH-HHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 3445555554443456778888888888888776444 477888899999999999999998888888777777765433
No 5
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=86.93 E-value=5.5 Score=35.39 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 161 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~k 161 (306)
+.|+..++..+..+.+.++.+-.++..-++.+...
T Consensus 6 a~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~ 40 (213)
T 3g67_A 6 KERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKI 40 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433333
No 6
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.76 E-value=3.3 Score=39.29 Aligned_cols=67 Identities=10% Similarity=-0.032 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHH
Q 021850 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDR 224 (306)
Q Consensus 158 vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f 224 (306)
+....+++.++.++.+.|-..+..+.+.++.+++.+++--..++..+.++...=.-+++-...+|.-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 4455666777888888888888899999999999999888888888888887777777777777753
No 7
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=86.19 E-value=9.8 Score=33.76 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=30.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
.+...+++++..+...-.++....+.+....++..++++.+.+.+.+....+.++...+..+-
T Consensus 4 qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3g67_A 4 EVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEAS 66 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555444444444444444444333333
No 8
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=85.98 E-value=5.3 Score=39.75 Aligned_cols=96 Identities=10% Similarity=0.212 Sum_probs=58.7
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----hh
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI 186 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKk---hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls-----~i 186 (306)
+.|.|=-+.++....+..|-..|++++..-..++. +|+..+...+.++.+..+..+.-.+++.+.+.-++ .+
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 48888888999999999999999999876666553 35555555555555554444444444433333222 23
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 187 g~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
...|..++..++.|..||..+|.+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666655544
No 9
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.42 E-value=6 Score=38.78 Aligned_cols=100 Identities=11% Similarity=0.154 Sum_probs=69.5
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHH-------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVY-------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs-------~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (306)
+-++|==+-|++.+.++.+...|+.++ .-+..++.-|.+|.....+.=+-..|.+..++..+..++++|..--
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667888888888887777663 4455667777777777777767777777777777777777776533
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhhhH
Q 021850 188 DEFQSVRDIVQTLESKLIEIEGKQDIT 214 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~ie~kQd~t 214 (306)
-.|..|+..|+.+-.||.+||..-|+-
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777777777777777665443
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.33 E-value=2.4 Score=34.62 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=26.0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
..|+.+...++.+...-......+.++.. +...++..++..+..||.-+..
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~ 93 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQK 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHH
Confidence 45556666665555555555555544433 2234455555555555555543
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.62 E-value=5.2 Score=35.73 Aligned_cols=57 Identities=4% Similarity=0.114 Sum_probs=25.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhh--hchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 155 ITSVDRDVNKIVEISQATQEEVTILR--GRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~--~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
|.+++..+++..+-.+..++....++ .+...+..+++....-...||.++-++...-
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433332 1233344555555555555555555444433
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.61 E-value=11 Score=38.49 Aligned_cols=99 Identities=10% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHH-------HHHHHHHHHHHHHHHhhhchhhhh
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN-------KIVEISQATQEEVTILRGRSKLIG 187 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLD-------eq~eis~~ik~eV~~v~~dls~ig 187 (306)
+-++|-=+-|++.+-++.|-.+|++++..=..+-....+-.+.+..++. -..|++...+..+..+++.|.+--
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999977666555555555555544444 344555555555666666665544
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 188 DEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
.-|..|+..|+.+-.||.++|---|+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777888887764443
No 13
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=83.53 E-value=7.8 Score=28.60 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhhhhhHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 125 SLSDACNSVARQLEDVYS-SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~-sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
.|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-...+++|+++++..+..+.-+++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777666665433 234455566677777666666666666666666666666555555555544
No 14
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.36 E-value=2.5 Score=34.65 Aligned_cols=70 Identities=7% Similarity=0.291 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 135 RQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 135 KqLeqVs~sL~~tKkh---LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
++...-.+.+..+|.+ +..+|+.|...++.+...-....+.+.++.. +...++..++..+..||.-+..+
T Consensus 24 ~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 24 REVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555555543 3456667777766666555555555555544 23445566666666666665543
No 15
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=79.97 E-value=37 Score=31.21 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHhhhcC
Q 021850 215 TLGVKKLCDRARELENG 231 (306)
Q Consensus 215 n~GV~~LC~f~~~le~~ 231 (306)
......|-+.+..|+..
T Consensus 282 ~~~~~~l~~~a~~L~~~ 298 (341)
T 3zx6_A 282 AAAAAALEEQASRLTEA 298 (341)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555543
No 16
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=78.89 E-value=13 Score=29.81 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=39.6
Q ss_pred hhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHH
Q 021850 179 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (306)
Q Consensus 179 v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~ 226 (306)
.+.-+..||+|+-.|+...+.+|.-+. .|.-++.-..-||.+.+
T Consensus 35 lk~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e 78 (91)
T 4aj5_A 35 LKTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLE 78 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 445578899999999999999999998 89999999999999886
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.62 E-value=38 Score=32.45 Aligned_cols=34 Identities=3% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD 159 (306)
+.+.+..+...+++....++..++++..+.+...
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3344555555555555666666666666655544
No 18
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=78.51 E-value=26 Score=28.59 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=14.6
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
+.++..+...+..+..++..+...+..++..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 19
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=78.18 E-value=8.4 Score=32.51 Aligned_cols=92 Identities=13% Similarity=0.180 Sum_probs=43.6
Q ss_pred CCCchhhhhhhhHHH------HHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021850 114 KLPDMMFATRRSLSD------ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (306)
Q Consensus 114 s~SDlMyVTKRnmsn------Av~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (306)
+..|.+....+.|.. ..+.+...|+.++..|..+-..|..-.++++-.=+... .+.+-+..++.=-...|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~----~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALD----RVEARLSALSKLKNKYG 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHH----HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHHHHHHHHcC
Confidence 344555555555553 23445555555555555555555555555543222211 12222333333333344
Q ss_pred hHHHHHHHHHHhHHHHHHHHhh
Q 021850 188 DEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.+++.|-..-..+..++..++.
T Consensus 143 ~~~eell~~~~~~~~eL~~l~~ 164 (175)
T 4abx_A 143 PTLEDVVEFGAQAAEELAGLEE 164 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 5555555555555555555543
No 20
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=78.09 E-value=7.6 Score=30.38 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (306)
..+...+++++..|+++...=...|+ +-|..++..+|+..++..++.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk---~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRN---TTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567778888888877633333443 346778889999999999999999888
No 21
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=78.03 E-value=5.3 Score=33.18 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHhhh
Q 021850 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-DVNKIVEISQATQEEVTILRG 181 (306)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~-kLDeq~eis~~ik~eV~~v~~ 181 (306)
|++-|.++|.++..+|+.+.+++..+.+.=. |- +++. .+..=......++++|..++.
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~-kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEANPG-KF-KLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HH-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-hc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777665422 22 1222 133344444445555544443
No 22
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.57 E-value=20 Score=33.73 Aligned_cols=42 Identities=7% Similarity=0.269 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhhhhhhHHHHHH------HHHHHHHHhhhhhhhhHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSIS------AAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~------~tKkhLsqRId~vD~kLDeq 165 (306)
.+..+|++.+.+++++.-+.+. .+.++|.+.|+++.+++-+.
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHH
Confidence 4566677777666666544433 45667889999888887544
No 23
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=76.98 E-value=27 Score=30.19 Aligned_cols=72 Identities=8% Similarity=0.074 Sum_probs=45.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 129 Av~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+|+.. +.+.+.-..|.....++..||..++..+.+-....+.++||. ..++--..-+|.|+..++
T Consensus 59 ~vs~~-~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl--------------~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 59 IVSHD-DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL--------------ISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 44444 334446666777777777787777777766655555555555 566666777777777776
Q ss_pred h-hhhhHh
Q 021850 209 G-KQDITT 215 (306)
Q Consensus 209 ~-kQd~tn 215 (306)
. |+..-.
T Consensus 124 ~EN~~LV~ 131 (152)
T 3a7p_A 124 KEHSQLVA 131 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 6 554433
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.87 E-value=20 Score=29.94 Aligned_cols=65 Identities=8% Similarity=0.128 Sum_probs=50.1
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
-.+..+++.+...+++...=....+.|+...+..++....++..++.-+..|+.++..+|.+.+.
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677777777777777777788888888888888888888888888888888888876654
No 25
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=76.58 E-value=20 Score=26.42 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhh-----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRD-----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~k-----LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
+..+++++.+..+.|...-..|.+.|+.|... -+...+.-...+..+..+...|..|...+...-..++.-|.++
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~ 92 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADI 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554211 2233344445555566666666666666666666666666555
Q ss_pred H
Q 021850 205 I 205 (306)
Q Consensus 205 ~ 205 (306)
.
T Consensus 93 A 93 (98)
T 3gwk_C 93 A 93 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=76.23 E-value=5.6 Score=31.45 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~-~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~ 180 (306)
---+.+...++++++.++++..... ..|+ +.|..++..|||..|+.+++.-||..+-
T Consensus 19 ~YE~df~~l~~~i~~kl~~i~~~~~~e~rk---~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 19 KLHEIFRGLLEDLQGVPERLLGTAGTEEKK---KLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344556667777777776533322 3333 3366778888888888888888887663
No 27
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=75.84 E-value=6.5 Score=33.67 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH------------HhhhchhhhhhHHHHHHHHHH--------hHHH
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TLES 202 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~------------~v~~dls~ig~Di~~v~~~V~--------~Le~ 202 (306)
-+.+-|++|+.+.|+|=.++|+.+.+.+..+++|. .+..|+.....|+..+...+. .+|.
T Consensus 11 y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~ 90 (141)
T 3okq_A 11 YMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 46677888888999988899988888888888864 334444444444454444443 3456
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhh
Q 021850 203 KLIEIEGKQDITTLGVKKLCDRAREL 228 (306)
Q Consensus 203 Ki~~ie~kQd~tn~GV~~LC~f~~~l 228 (306)
-|..|..-|+|-|.==..+...-+.+
T Consensus 91 EL~~VceEQqfl~~QedL~~DL~eDL 116 (141)
T 3okq_A 91 ELDKVCEEQQFLTLQEELILDLKEDL 116 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777766544444433333
No 28
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=75.69 E-value=3 Score=33.01 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=43.7
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~ 180 (306)
+++----+.+...++++++.+.++...=...|+. -|..++..|||..++..++.-||..+-
T Consensus 5 elFe~YE~df~~l~~~i~~kl~~i~~~~geerk~---~i~~ie~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 5 SSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQ---MVANVEKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333334567778888888888876432333443 377888999999999999999987764
No 29
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=75.65 E-value=4.8 Score=37.68 Aligned_cols=41 Identities=7% Similarity=0.221 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
...|+++++..++....+|+..|+.++++...=..++.+.|
T Consensus 199 Nv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~ 239 (268)
T 2yo3_A 199 NYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKI 239 (268)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999888888777777655433333333333
No 30
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=75.64 E-value=3.4 Score=27.19 Aligned_cols=28 Identities=21% Similarity=0.397 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
+++..|+.+++.+|+.|..+++++|..-
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999998754
No 31
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=75.20 E-value=8.2 Score=35.35 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=50.5
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
..||..+..++|+..+=+-...+.+..+.-.+..+..||..++.-|..|++++...|.+
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccc
Confidence 57999999999999887777778888888888999999999999999999988866654
No 32
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=75.11 E-value=12 Score=29.24 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=40.3
Q ss_pred hHHHHHHHHhh---hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 125 SLSDACNSVAR---QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 125 nmsnAv~svtK---qLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
+|.+-+.++=+ +|-..-.+|.-+|+.|..|+|.|.+.- +.+..++.+++++-..++
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~---------------------e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEK---------------------DVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 45555555433 344445678888999999988777654 334666788888888888
Q ss_pred HHHHHHhh
Q 021850 202 SKLIEIEG 209 (306)
Q Consensus 202 ~Ki~~ie~ 209 (306)
.|+.++|.
T Consensus 65 ~ri~elEe 72 (77)
T 2w83_C 65 EKNRELEE 72 (77)
T ss_dssp HHC-----
T ss_pred HHHHHHHH
Confidence 88887764
No 33
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=74.29 E-value=26 Score=35.29 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=82.3
Q ss_pred cccCCCchhhhhhhhHHHHHHHHhhhhhhH-------HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021850 111 KGWKLPDMMFATRRSLSDACNSVARQLEDV-------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (306)
Q Consensus 111 KGws~SDlMyVTKRnmsnAv~svtKqLeqV-------s~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl 183 (306)
-|--+-++|-=+.|+..+.++.+...|+.+ +.-+..++.-|.+|.....+.=+-..|.+..++.....+++.|
T Consensus 48 SGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 48 SGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 355566788888999999988888888877 4556777888888888888888888888999999998998888
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
..--.-|..++..|+.+-.||.++|.--+
T Consensus 128 d~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 128 ATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76448888888888888888888886433
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.84 E-value=24 Score=27.53 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=45.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
++.|..|+++..+.+...+-||.+++..-.....+.+.++.-...|+.....+..-|..-...|..|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777777777667666666666666666666666555555555555
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.52 E-value=18 Score=32.14 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
=-+.|...+++|-..|+.+.+.+.....-...++.++.++...+.++..|++.++..+...+.++..+..
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~ 88 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS 88 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3345666677777777777777777777777777888888888888888888888777777777765543
No 36
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=72.70 E-value=58 Score=29.86 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 021850 61 LLAEVSSVQ 69 (306)
Q Consensus 61 L~aQV~~La 69 (306)
|...+++++
T Consensus 11 l~~~~~~ia 19 (341)
T 3zx6_A 11 LSNTVDKIA 19 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 37
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=72.61 E-value=36 Score=33.86 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021850 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (306)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl 183 (306)
.+.|...++++...|+.|.+++++....+..+++-|..++..+
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~sl 130 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKL 130 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 4445566666666666666666665554444443443333333
No 38
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=72.54 E-value=8.3 Score=27.76 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=23.8
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V 197 (306)
+.++.|..++..++.++..|.+||..=-.-+..+..+++.....+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l 53 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKL 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666544444444444444444333
No 39
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=72.31 E-value=20 Score=25.75 Aligned_cols=45 Identities=9% Similarity=0.165 Sum_probs=22.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
+.-+.++.|..++..++.++..|-+|+..=-.-+..|..+++...
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~ 51 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNK 51 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455555555555666666666655443333333333333333
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.14 E-value=12 Score=36.68 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~ 191 (306)
|.|.....=+|..+--..+...-.+|.+||.-|..+++.|..-.+..|..|..++.++.++.-||+
T Consensus 93 ~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 93 IVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444556777888888888888877777777777777777766666664
No 41
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=72.06 E-value=6.4 Score=31.56 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=43.8
Q ss_pred hhhhheeeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 99 viGavGYgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
++.-+|.|||=.+ ++..|++.|..||+.++..+++..+....++++++.
T Consensus 72 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~ 120 (133)
T 1fxk_C 72 VIMSVGAGVAIKK-------------------------------NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120 (133)
T ss_dssp EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEe-------------------------------eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999887 347888899999999999988888888777777766
Q ss_pred hhhchh
Q 021850 179 LRGRSK 184 (306)
Q Consensus 179 v~~dls 184 (306)
+...+.
T Consensus 121 ~~~~l~ 126 (133)
T 1fxk_C 121 LSPQAE 126 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 42
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.66 E-value=7.8 Score=30.16 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=16.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
.|..||..+...|++...=....+.|+
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666555555554
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.20 E-value=25 Score=26.45 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=27.4
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
..|.+.+..++.+...-.....++|..++..+..+..|++....-+.....|+..
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555555555555555555544444444443
No 44
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=70.70 E-value=43 Score=29.27 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
..|+..++...+..-.|...+++.+..||..-.+++
T Consensus 103 ~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 103 QEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555556666666777777777777777666555
No 45
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=69.84 E-value=3.2 Score=29.09 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=16.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHH
Q 021850 147 AQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~e 167 (306)
+|.+|-|.|++||..++...+
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~ 23 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQ 23 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999998876643
No 46
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=69.83 E-value=17 Score=27.47 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
..|+.+++.=..++..|+.++++...+=..++.-+..+..
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666666666665543
No 47
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.69 E-value=38 Score=26.43 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHH
Q 021850 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDR 224 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f 224 (306)
..=+....-|.+.+..++.+..+-.....++|..++..+..+..|++....-+...-.++..-+..-..+-..|..|..-
T Consensus 15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRr 94 (101)
T 3u59_A 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677777777777777778888888888888888888888888888877778877776666677777777776
Q ss_pred HHhhh
Q 021850 225 ARELE 229 (306)
Q Consensus 225 ~~~le 229 (306)
+.-++
T Consensus 95 iqllE 99 (101)
T 3u59_A 95 IQLVE 99 (101)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 65544
No 48
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.32 E-value=38 Score=26.39 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V 197 (306)
|..||..+...+|...+-....+..+.+.....+.--.++.+++..+
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333333333333333333444444333
No 49
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=69.14 E-value=16 Score=25.63 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 158 vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
++.+++++.+.-..++.+..+.+..+.+.-.++..++.-+..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444343344444444444444444444444444444443333
No 50
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=69.05 E-value=25 Score=26.84 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHH
Q 021850 186 IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (306)
Q Consensus 186 ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (306)
|+.+++.=..++..|+.++++...+=..+|.-+.
T Consensus 48 ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~ 81 (87)
T 1sfc_D 48 MGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555444444444433
No 51
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=68.14 E-value=39 Score=26.03 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=16.9
Q ss_pred HHHHHhhhhhhHHHHHH---HHHHHHHHhhhhhhhhHHH
Q 021850 129 ACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 129 Av~svtKqLeqVs~sL~---~tKkhLsqRId~vD~kLDe 164 (306)
....+.+.++++.+.|. .-+..+.++|+.+...+..
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544443 3344455555555544443
No 52
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.00 E-value=42 Score=32.76 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 167 EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 167 eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
+-++.+.+++..+...+......|..++..+..++.||..
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~ 123 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQ 123 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHH
Confidence 3334444444444444444444444444444444444443
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.89 E-value=44 Score=26.22 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=54.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHh
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~ 227 (306)
+....-|.+.+..++.+...-.....+||..++..+..+..|++.....+...-.++..-+..-.-+-..|..|-.-+.-
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666667777777777777888888888888888888887777777677766655555555566655544443
Q ss_pred h
Q 021850 228 L 228 (306)
Q Consensus 228 l 228 (306)
+
T Consensus 98 l 98 (101)
T 3u1c_A 98 V 98 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=65.77 E-value=35 Score=24.68 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=19.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 021850 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (306)
Q Consensus 129 Av~svtKqLeqVs~sL~~tKkhLsqRId~vD 159 (306)
.+..+++++.+..+.|...-..|.+.|+.|.
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~ 43 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSLE 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666663
No 55
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=65.40 E-value=55 Score=26.78 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsq---RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
....++++=+..++.-|-+|++--+.|.+ |++....+++|..+=-+++.+++.++-...-.+..++..+.
T Consensus 31 ~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 31 AIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34667777788888888888765555554 44444444444433334444445444444444444444333
No 56
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=65.22 E-value=37 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=11.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 021850 132 SVARQLEDVYSSISAAQRQLSSKITSV 158 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsqRId~v 158 (306)
.+++++.+..+.|......|.+.|+.|
T Consensus 16 ~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 16 GVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 57
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=64.77 E-value=33 Score=24.58 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=37.6
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
|.+++.++..|++...-|...-..+|......++.....-..-+..+..||.|+..++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 5566666677776655555555556666666666655555555777888888877554
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.17 E-value=40 Score=34.46 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHhhhchhhhhhHHHH-HHHHHHhHHHHHHHHhhhhh
Q 021850 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQAT----QEEVTILRGRSKLIGDEFQS-VRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~i----k~eV~~v~~dls~ig~Di~~-v~~~V~~Le~Ki~~ie~kQd 212 (306)
+...|-.+-+-|+.||+.|-.++|+...-.+.+ +..+..++.++.+.+ |.++ +.++-+.||.+|..|+.+-+
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 556788888999999999999998886555544 344566666666666 3333 33333366666665555443
No 59
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=63.47 E-value=32 Score=26.26 Aligned_cols=60 Identities=7% Similarity=0.144 Sum_probs=41.8
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
++.-+.++.|...+..++.++..|-+||..=-.-+..|..+++.....+..--.|+..+-
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666777777777777777777777777777777777776666666553
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=62.30 E-value=47 Score=24.91 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=47.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHh
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn 215 (306)
|..+|+.+-...|...+=......++.+..........++.+++..+..||.-++..+..=.-++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666667777777777788889999999999999998887766544333
No 61
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=61.76 E-value=13 Score=26.23 Aligned_cols=36 Identities=8% Similarity=0.345 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 161 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~k 161 (306)
|.+.+..+-..+-.+-....++..+|.|||..+..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555555568999999999988765
No 62
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=61.63 E-value=43 Score=24.22 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
.+|+++...+..+...|.+.+++|...++..
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777776654
No 63
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=61.00 E-value=35 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=10.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHH
Q 021850 173 QEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~ 194 (306)
+.||..+++.++....+++.+.
T Consensus 33 q~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 33 QSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 64
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=60.07 E-value=13 Score=28.44 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=34.2
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
..|.+||+.|..|+--|........+.|++-+. +|+.++.-+.-|-.|+..++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~-------~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARL-------TGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 457788888888887777777777777755544 445666666666677766554
No 65
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=59.29 E-value=20 Score=26.98 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=45.8
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
-..++.|..++..++.++..|.+||.+=-.-+..+..|++.....+..--.|+..+-.
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888888888888888888888888888877777777776544
No 66
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=59.17 E-value=40 Score=27.21 Aligned_cols=73 Identities=7% Similarity=0.010 Sum_probs=58.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 134 ARQLEDVYSSISAAQRQLSSKITSV--DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 134 tKqLeqVs~sL~~tKkhLsqRId~v--D~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
....+..+.+...-+..|..+|+.. -+.+|++..=+...++.|++.-.-+- .+|+..-+..|..|..++++..
T Consensus 30 ~E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r 104 (111)
T 2l3l_A 30 KENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERR 104 (111)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777788888888866 55688888888888899988887776 7899999999999999998654
No 67
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.65 E-value=64 Score=34.89 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=10.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHH
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEE 175 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~e 175 (306)
+..++..++.++++..+-.+...+|
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333
No 68
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.39 E-value=57 Score=25.46 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=28.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
.|+.+..|-....+=...++.....+.....+...+....+..+++|=+||+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333333333333333333333445556667777777777777777777653
No 69
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=57.62 E-value=36 Score=23.76 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (306)
++.-......-.+++..+++....++++..+-...+++++.+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455556666666666666655555555555554443
No 70
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=57.57 E-value=21 Score=34.37 Aligned_cols=27 Identities=7% Similarity=0.287 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik 173 (306)
+-..+|.+..+++.+..+ .++++++|.
T Consensus 33 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~ 59 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTE---RNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344566666666665554 445555554
No 71
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=57.27 E-value=2 Score=33.04 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.1
Q ss_pred eEEEecCccceeee
Q 021850 9 TFLVGAGILTSVLA 22 (306)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (306)
+++||||++|..++
T Consensus 5 V~IIGaGpaGL~aA 18 (336)
T 3kkj_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68899999986543
No 72
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.22 E-value=39 Score=26.22 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.+.+..+++|++.+..+=.+..+-....++++.+-+..-.+...+ +....+.|++||.++..
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~E---lk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAE---VGRAAQLLDVSLFELSE 66 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHH
Confidence 344555666666666655555444455555555555444444443 34445677788877654
No 73
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.68 E-value=57 Score=31.99 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=14.2
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAA 147 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~t 147 (306)
|+|.==.++..+-+..|...|++|+.+=+.|
T Consensus 27 d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~ 57 (411)
T 3ghg_C 27 DFLSTYQTKVDKDLQSLEDILHQVENKTSEV 57 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHhhhhHH
Confidence 4444444444444444444454444443333
No 74
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=56.58 E-value=26 Score=27.04 Aligned_cols=39 Identities=10% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDe 164 (306)
|.+.+..+-..+-.+-....++..+|.|||.+|..++-.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444455555555555568999999999999988744
No 75
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=56.00 E-value=25 Score=25.12 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=30.0
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHH
Q 021850 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (306)
Q Consensus 174 ~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (306)
.-|..++.=-..||.+++.=..++..|+.++++...+=..++.-+.
T Consensus 16 ~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~ 61 (65)
T 1gl2_D 16 SIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444667777777777777788887777776666665543
No 76
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=55.65 E-value=1.1e+02 Score=27.05 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH----HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE----VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~e----V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
-||.=-+.....-++|..++.++...+++.+.=-+..+.+ ++.++..++........++.-+..||-+=+.+|.+-
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444555666778888888888887776666666655 777777777777777777777777777666666655
Q ss_pred hhHhHHHH
Q 021850 212 DITTLGVK 219 (306)
Q Consensus 212 d~tn~GV~ 219 (306)
-.+..-+.
T Consensus 126 R~~~~Sle 133 (189)
T 2v71_A 126 RATIMSLE 133 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhHH
Confidence 55544443
No 77
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=55.33 E-value=1.4e+02 Score=29.30 Aligned_cols=91 Identities=10% Similarity=0.164 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhch------------------hhhhhHHHHHHHHHHhHH
Q 021850 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS------------------KLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl------------------s~ig~Di~~v~~~V~~Le 201 (306)
+.+.|....+.....|+.|...|++....+..+.+-|..++... +.+-+++..+...+...+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56667777777777777777777777777777776666666531 224455555556666666
Q ss_pred HHHHHHhhhhhhHhHHHHHHHHHHHhhhc
Q 021850 202 SKLIEIEGKQDITTLGVKKLCDRARELEN 230 (306)
Q Consensus 202 ~Ki~~ie~kQd~tn~GV~~LC~f~~~le~ 230 (306)
..|..++..-+.-+.-|..|-+-+..++.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555556666666666665554
No 78
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=54.60 E-value=67 Score=24.28 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=23.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ei 168 (306)
-+|++....|..+.++|...|+.|+..++.....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566667777777777777777777777666554
No 79
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=53.87 E-value=21 Score=34.87 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
+-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+...+..+..-+..||.++..++.
T Consensus 36 l~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHE---RNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777666655 45566666541 111233444444444555444445555544443
No 80
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=52.69 E-value=49 Score=32.86 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~ 174 (306)
++-..+|.+..+++.+..+ .++++++|..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~---rn~~sk~i~~ 102 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEE---KEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3445677777777777665 4555666654
No 81
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.24 E-value=62 Score=32.59 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~ 191 (306)
+|.|....-=+|..+--..+...-.+|..||.-++.++|.+..-....|..|...+.++.++..||+
T Consensus 90 ~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 90 ETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555556777888888899888876666666666555555544444443
No 82
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=51.78 E-value=65 Score=23.27 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=23.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
.+|+++...+..+..+|.+.++.|+..++..
T Consensus 12 ~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 12 EELRGVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888888888887777665
No 83
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=51.71 E-value=25 Score=24.96 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
..+-.+.|-.=|+|+.+.....-..+..|||.+..++|+.
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444555566666666666667777777777776653
No 84
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=48.99 E-value=94 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=12.4
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 176 V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
+........+...+|.+++..+..||.-++
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444
No 85
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=48.78 E-value=1e+02 Score=24.62 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=53.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD-~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~ 202 (306)
+...+++|++.-+.|...=..|..+.++|+ +.=++........++-+..++.-.+.....|.-++..++-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456789999999999999999999999998 4444455556666666666666666666677777766666554
No 86
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=48.44 E-value=1.4e+02 Score=26.11 Aligned_cols=15 Identities=0% Similarity=0.224 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
+..-|+..+.+-..|
T Consensus 71 i~~~I~~IA~QTNLL 85 (227)
T 1qu7_A 71 IISVIDGIAFQTNIL 85 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 87
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.32 E-value=2e+02 Score=27.95 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHhhhc
Q 021850 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (306)
Q Consensus 184 s~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~le~ 230 (306)
+.+.+++..+..++..-+..|..++..-+..+.-|..|-+-+..+++
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444555555555555556666655444455666666665655554
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=47.84 E-value=78 Score=24.11 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (306)
..|..||..+...|++...=....+.|+.-+.+.+.
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666666666666666666666666555544443
No 89
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=47.60 E-value=56 Score=25.07 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (306)
.-+-++.|...+..++.++..|.+|+ +.=..++..++.|+++...+-..+|.-+..
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~El--------------d~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEI--------------GSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444 445555555556666555555555554433
No 90
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=46.96 E-value=80 Score=22.93 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=35.9
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh----hhhHhHHHHHHHHHHH
Q 021850 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRAR 226 (306)
Q Consensus 174 ~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k----Qd~tn~GV~~LC~f~~ 226 (306)
+++..+..++..++.=+..+..+|..=+.-|++||.| ++.+..|...|-.+..
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 62 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAY 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666777777777777888888886 4555566666765554
No 91
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=46.38 E-value=1.1e+02 Score=25.79 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=49.5
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~G 217 (306)
.||+.+..+|.+...+.+.......++.+.+..+..|+..--......|.|+..++..=.....-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777888888888889999988888888888888887754443333
No 92
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=46.14 E-value=80 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kL 162 (306)
|++....+.....+|.+.|+.|+..+
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~ 37 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTA 37 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 93
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=46.11 E-value=1.2e+02 Score=24.85 Aligned_cols=98 Identities=13% Similarity=0.259 Sum_probs=56.6
Q ss_pred EEecccCCCchhhhhhhhHHHHHHHHhhhhhhH-----------HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 108 VWWKGWKLPDMMFATRRSLSDACNSVARQLEDV-----------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 108 mwWKGws~SDlMyVTKRnmsnAv~svtKqLeqV-----------s~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
.+.-+-+.-|=+|+-|.-..++++.+-.-..+- ++.+..++++|..-|+.+.+.|++..+....+..+=
T Consensus 18 ~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np 97 (130)
T 4dnd_A 18 LYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP 97 (130)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred eeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 344566677999998888888877776655542 124677888888888888888888877666554332
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 177 ~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
..-+-+ ..|+..=+..|..++.+|..|+.
T Consensus 98 ~kF~l~----~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 98 GKFKLP----AGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHCCC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 12344445566666666665553
No 94
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=45.63 E-value=61 Score=23.57 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhH
Q 021850 138 EDVYSSISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~kL 162 (306)
++....|....++|.+.|+.|+..+
T Consensus 11 ~~~a~~~~~~~~~i~~~l~~l~~~v 35 (94)
T 3fav_B 11 EAAASAIQGNVTSIHSLLDEGKQSL 35 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 95
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=45.61 E-value=81 Score=25.67 Aligned_cols=59 Identities=3% Similarity=-0.013 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
=|.-|.=.||-|-++|+++.|.-.+++.|..+-..+++........++.-+..|...|.
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778999999999999999999988888877777777777777766666665554
No 96
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=45.61 E-value=86 Score=22.91 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 021850 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (306)
Q Consensus 135 KqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ 166 (306)
.+|+++...+..+...+.+.+++|...++...
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888777766653
No 97
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=45.50 E-value=74 Score=24.48 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=34.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
-++|..+++.-++.+|..+-+.++.+-.+..--+--..+.++....+.....||.++
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 456777777777777777777777776655444444444555555665555555544
No 98
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=45.01 E-value=1.1e+02 Score=27.12 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=30.0
Q ss_pred HhHHHHHHHH---hhhhhhHhHHHHHHHHHHHhhhcCCCcccccc
Q 021850 198 QTLESKLIEI---EGKQDITTLGVKKLCDRARELENGRPTELVQS 239 (306)
Q Consensus 198 ~~Le~Ki~~i---e~kQd~tn~GV~~LC~f~~~le~~~~~~~~Q~ 239 (306)
..+...+.+| ..-||.|-+=|......++.+|..-..=+...
T Consensus 126 ~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L~~ll~~~ 170 (214)
T 1kmi_Z 126 SFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLEN 170 (214)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444454433 45899999999999999999998877666543
No 99
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.98 E-value=57 Score=24.97 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=29.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILR 180 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsq---RId~vD~kLDeq~eis~~ik~eV~~v~ 180 (306)
.++|++ +.++.++|...-.+|.+ ||+.++..|++-.+..+..+.++...+
T Consensus 15 ~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 15 IEGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555 77777777666654443 577777777777666666666654443
No 100
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.71 E-value=40 Score=25.86 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
+..|+..|..+++.+
T Consensus 25 l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 25 VVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666665
No 101
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=44.64 E-value=79 Score=22.16 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhH
Q 021850 166 VEISQATQEEVTILRGRSKLIGDE 189 (306)
Q Consensus 166 ~eis~~ik~eV~~v~~dls~ig~D 189 (306)
..++..+++-++.++.-.+.+..+
T Consensus 65 ~~~shel~tpl~~i~~~~e~l~~~ 88 (114)
T 3zcc_A 65 AGVSHDLRTPLTRIRLATEMMSEQ 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHhhHHHcChHHHHHHHHHHHHHh
Confidence 344555555555555554444433
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.62 E-value=1e+02 Score=37.60 Aligned_cols=98 Identities=5% Similarity=0.141 Sum_probs=45.0
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh-------hhhHHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRSKL-------IGDEFQSVR 194 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhL---sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~-------ig~Di~~v~ 194 (306)
=+.++++...+.|+...+.|++++..| ..+|+.+.++.++...=.+.+++|+...+..+++ .+++=.-=.
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 344555555555555555555544433 3455555555554444444455555444444332 233333333
Q ss_pred HHHHhHHHHHHHHhhhhhhHhHHHHHHH
Q 021850 195 DIVQTLESKLIEIEGKQDITTLGVKKLC 222 (306)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~tn~GV~~LC 222 (306)
+.+..|+.++..+-+.-=.+..-|-|+.
T Consensus 2091 ~~~~~l~~~~~~L~GD~LLaaafisY~G 2118 (3245)
T 3vkg_A 2091 QQSENFNTQMSTVVGDVVLASAFLAYIG 2118 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3444444444444444333444444443
No 103
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=44.42 E-value=17 Score=22.88 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhchhhhhhHHHH
Q 021850 171 ATQEEVTILRGRSKLIGDEFQS 192 (306)
Q Consensus 171 ~ik~eV~~v~~dls~ig~Di~~ 192 (306)
+.+|||.++++.+..+.++++.
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 5678887777777666665554
No 104
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=44.35 E-value=1.3e+02 Score=24.57 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=21.2
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
.|...++.+..-+|+.-+.+...++.-..-|..|.+.+++.
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~l 47 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 47 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555554444
No 105
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=44.31 E-value=1.5e+02 Score=25.53 Aligned_cols=25 Identities=4% Similarity=-0.052 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 188 DEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 188 ~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
..++.+++-...|--.+..+|.+-.
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555554433
No 106
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=43.94 E-value=1.1e+02 Score=27.92 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhHH
Q 021850 166 VEISQATQEEVTILRGRSKLIGDEF 190 (306)
Q Consensus 166 ~eis~~ik~eV~~v~~dls~ig~Di 190 (306)
.+++.+++..|.+.+.++.-.++|+
T Consensus 208 ~~~~~~~~qq~e~f~~~~~p~~e~~ 232 (273)
T 3s84_A 208 AELGGHLDQQVEEFRRRVEPYGENF 232 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 4556777777877777776666655
No 107
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=43.61 E-value=31 Score=23.96 Aligned_cols=30 Identities=10% Similarity=0.382 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~ei 168 (306)
.+-+.+.+-...|..||+.++.|||...+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888999999999999887554
No 108
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.34 E-value=43 Score=36.11 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=8.8
Q ss_pred CCCccchhHHhHhHHHHHHHhh
Q 021850 24 EGRLSSVSDAVGGTLKIVSKLI 45 (306)
Q Consensus 24 nGkLsD~~~~lsg~lk~v~k~~ 45 (306)
.|+.+.+...+..-+..+...+
T Consensus 652 ~~~~~tv~~~f~~~l~~L~~~l 673 (1184)
T 1i84_S 652 KGMFRTVGQLYKEQLTKLMTTL 673 (1184)
T ss_dssp ---CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 3445555554444444444433
No 109
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=43.15 E-value=1.2e+02 Score=23.66 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
++.+|..++.+.+..++.+|.+.. .|-.+ + -..+..-+.++..-++.|-..+..+=.|+
T Consensus 13 sFN~A~~~i~~g~~tts~AL~kiQ--------dVVN~---q----------~~aL~~L~~qL~~NFgAISssi~dIy~RL 71 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGKLQ--------DVVNQ---N----------AQALNTLVKQLSSNFGAISSVLNDILSRL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---H----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456677777777777777765433 22222 1 11122223444455555555566666777
Q ss_pred HHHhh
Q 021850 205 IEIEG 209 (306)
Q Consensus 205 ~~ie~ 209 (306)
+.+|+
T Consensus 72 d~leA 76 (77)
T 2bez_C 72 DKVEA 76 (77)
T ss_dssp HHHHH
T ss_pred Hhhhc
Confidence 77664
No 110
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.07 E-value=1.4e+02 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=30.9
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 021850 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (306)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ 206 (306)
+.|+.++..+.+.+.=....+.+..++...++.+..+++.++.-+..||.++..
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444445555555556666666777777777777777653
No 111
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.04 E-value=89 Score=24.09 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
.+|++++...++......-.+...+ +....||..++=.++.+...|..+...|.
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql-------~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQL-------SDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555443333333333344444 44455555555555555566665555443
No 112
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=40.59 E-value=97 Score=22.05 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (306)
..+..-|..++.=-..||.+++.=..++..|+.++++...+=..++.-+..
T Consensus 13 d~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 13 EQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444555555556678888888888888888888777777666665544
No 113
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=40.49 E-value=19 Score=26.27 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.0
Q ss_pred eeeEEecccCCCchhhhhhhhHH
Q 021850 105 YGYVWWKGWKLPDMMFATRRSLS 127 (306)
Q Consensus 105 YgYmwWKGws~SDlMyVTKRnms 127 (306)
.-++.|||+.-+|-.|-...||.
T Consensus 17 ~YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 17 YYLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEecCCCcCCcEeEHHHCC
Confidence 34689999999999999999994
No 114
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=40.31 E-value=1.6e+02 Score=28.37 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=28.8
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 021850 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (306)
Q Consensus 120 yVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId 156 (306)
|-.|+.+.+....+-|.+......|..+|+...++-.
T Consensus 128 ~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~ck 164 (486)
T 3haj_A 128 FKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACK 164 (486)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888888888888888889988888765543
No 115
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.30 E-value=48 Score=33.00 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
|-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++..
T Consensus 38 ld~~~r~~~~~~~~l~~~---rn~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKK---LNSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777665 45555555432 1222344444445555555555555555544443
No 116
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.17 E-value=1.4e+02 Score=23.88 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhh
Q 021850 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (306)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~ 213 (306)
+.+..-|.+|...|+++-.-+|+.+.=-+.=...=..+..++..++.|++...-.=-.||.++..+..-=+|
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666555554321111111123344556666677777776667788888877664443
No 117
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=40.06 E-value=1.1e+02 Score=22.31 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=18.1
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 175 eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+|......++.....-..=++.+..||.|+...+
T Consensus 28 eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 28 EVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4444444444333332233777777888777554
No 118
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=39.10 E-value=90 Score=33.65 Aligned_cols=7 Identities=14% Similarity=-0.140 Sum_probs=3.5
Q ss_pred ccceeee
Q 021850 16 ILTSVLA 22 (306)
Q Consensus 16 ~~GSVl~ 22 (306)
|+|.|.+
T Consensus 585 yag~V~Y 591 (1184)
T 1i84_S 585 YAGKVTY 591 (1184)
T ss_dssp SSCEEEE
T ss_pred CCceEEe
Confidence 4455554
No 119
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=38.66 E-value=1e+02 Score=25.10 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=11.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 021850 148 QRQLSSKITSVDRDVNKIVEISQATQEE 175 (306)
Q Consensus 148 KkhLsqRId~vD~kLDeq~eis~~ik~e 175 (306)
+.-|..+++.++.++++..++.+.+...
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 110 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFK 110 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333
No 120
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=38.55 E-value=87 Score=24.49 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 186 IGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 186 ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
-..||..=+..|..++.+|..|..
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888888776654
No 121
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=38.40 E-value=1.6e+02 Score=23.91 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=15.1
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 183 SKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 183 ls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
+..+...+..++.+...|+.+++..+.
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666665544
No 122
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=37.98 E-value=73 Score=23.55 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHH--------HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 151 LSSKITSVDRDVNKIVEISQATQ--------EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik--------~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
+..++..++=.|++.+++...-. +-..-++.....+...+..++.+...|+.++...+..
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555566666666554321 1123344455566666777777777777777766653
No 123
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=37.73 E-value=57 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQ 150 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkh 150 (306)
-++.-+.+.|.++.-.|+.+.+||..+++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367889999999999999999999986655
No 124
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.55 E-value=65 Score=23.12 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 021850 175 EVTILRG 181 (306)
Q Consensus 175 eV~~v~~ 181 (306)
+|..++.
T Consensus 26 dV~al~~ 32 (52)
T 1jcd_A 26 DANAARS 32 (52)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 125
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=37.20 E-value=1.2e+02 Score=22.07 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 172 ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
++..+..-..++.....++..++..++.|+..|+.+.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555667778888999999999999988764
No 126
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=36.52 E-value=83 Score=24.09 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=30.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021850 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (306)
Q Consensus 131 ~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl 183 (306)
...-..|++++..|..-| ++. ..+...||+|.++...|.++|..+...+
T Consensus 26 ~eqD~~Ld~ls~~l~rLk-~mA---~~mg~Eld~Qn~~LD~i~~~~D~~~~rl 74 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLR-NMA---IDMGNEIGSQNRQVDRIQQKAESNESRI 74 (87)
T ss_dssp HHHHHHHHHHHTTHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776665443 222 3456678888888887777775554444
No 127
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=36.42 E-value=1.2e+02 Score=21.78 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kL 162 (306)
|+++...+..+..+|.+.++.|+..+
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~ 36 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQ 36 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 128
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=36.09 E-value=2.5e+02 Score=25.58 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH------HHHHhH
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR------DIVQTL 200 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~------~~V~~L 200 (306)
.+++.+|+-.|-.+...+..+-.++.++++..-..|-.. ..+.+.|...|..=..+.++|..+. ..+..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSI----RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 478888888888888888888888888877666555333 2223345555555555666666555 355677
Q ss_pred HHHHHHHhhhhhhH
Q 021850 201 ESKLIEIEGKQDIT 214 (306)
Q Consensus 201 e~Ki~~ie~kQd~t 214 (306)
|..|.+.|.....+
T Consensus 137 eqELvraEae~lva 150 (234)
T 3plt_A 137 EQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 77776655544444
No 129
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=36.00 E-value=2.3e+02 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHH
Q 021850 186 IGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 186 ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
.|.=|+.|-.+|+.+|.+|..+
T Consensus 145 TGQ~I~KVi~lv~~vE~~L~~l 166 (214)
T 1kmi_Z 145 TGQVIKRMMDVIQEIERQLLMV 166 (214)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666665544
No 130
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=35.82 E-value=1.6e+02 Score=27.44 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHH
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (306)
++++.+..+=..+-.-=...+.-+++..+-.+.+-+ ...+.-+.....|++.+...|.+|+..|.++..=.-.-.+|+
T Consensus 339 ~i~~~~~~~l~~~~~G~~t~eeal~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 416 (463)
T 2xz3_A 339 AFWYAVRTAVINAASGRQTVDAALAAAQTNAAALSH--QRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGL 416 (463)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q ss_pred HHHHHHHHh
Q 021850 219 KKLCDRARE 227 (306)
Q Consensus 219 ~~LC~f~~~ 227 (306)
.+| |++.
T Consensus 417 ~~~--~~~~ 423 (463)
T 2xz3_A 417 DWL--YIRL 423 (463)
T ss_dssp HHH--HHHT
T ss_pred hHH--HHHh
No 131
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.64 E-value=1.4e+02 Score=36.46 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 021850 157 SVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (306)
Q Consensus 157 ~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~ 192 (306)
.+..++++.++--+..++++.++.+.+.....+.+.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444333
No 132
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.48 E-value=67 Score=24.26 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcC
Q 021850 61 LLAEVSSVQQELSHV 75 (306)
Q Consensus 61 L~aQV~~LaqElr~L 75 (306)
+..|+..|..+++.+
T Consensus 20 l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 20 ISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777766665
No 133
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=34.73 E-value=82 Score=30.26 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 021850 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (306)
Q Consensus 144 L~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQ 211 (306)
+-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.+-
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777666655 45566665531 11124455566666667766666666666666543
No 134
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.57 E-value=99 Score=23.61 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=6.0
Q ss_pred HHHhhhhhhhhHHHH
Q 021850 151 LSSKITSVDRDVNKI 165 (306)
Q Consensus 151 LsqRId~vD~kLDeq 165 (306)
+..+|+.+..+++..
T Consensus 82 ie~~i~~le~~~~~l 96 (117)
T 2zqm_A 82 LEVRLNALERQEKKL 96 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 135
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.54 E-value=90 Score=23.54 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=6.3
Q ss_pred hHHHHHHHHhhhhh
Q 021850 125 SLSDACNSVARQLE 138 (306)
Q Consensus 125 nmsnAv~svtKqLe 138 (306)
...+|...+.+..+
T Consensus 62 ~~~e~~~~L~~~~e 75 (107)
T 1fxk_A 62 AKDELTEELQEKLE 75 (107)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44454444444433
No 136
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=34.28 E-value=7.7 Score=33.70 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=10.7
Q ss_pred eEEEecCccceee
Q 021850 9 TFLVGAGILTSVL 21 (306)
Q Consensus 9 ~ILvGAG~~GSVl 21 (306)
+++||||++|+.+
T Consensus 7 ViIVGaGpaGl~~ 19 (397)
T 3oz2_A 7 VLVVGGGPGGSTA 19 (397)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 6899999998743
No 137
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=34.23 E-value=2.7e+02 Score=27.83 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=26.5
Q ss_pred CCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 021850 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (306)
Q Consensus 115 ~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKk 149 (306)
+.|+|.==.++..+-+..|-..|++++.+=+.|+.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 67888888888888888888888888766555543
No 138
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=34.07 E-value=82 Score=27.50 Aligned_cols=51 Identities=6% Similarity=0.216 Sum_probs=28.3
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 021850 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 117 DlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~e 167 (306)
|-+|.+--.|.++...-...|..=...|...+..|.++.+.|...++...+
T Consensus 34 e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 34 DKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666655555555555555555555555555555555544444
No 139
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=33.87 E-value=3.4e+02 Score=26.41 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=4.3
Q ss_pred CccchhH
Q 021850 26 RLSSVSD 32 (306)
Q Consensus 26 kLsD~~~ 32 (306)
.|.||++
T Consensus 120 ~L~DFIs 126 (413)
T 4hpq_C 120 KLGDFIS 126 (413)
T ss_dssp TTTTSSC
T ss_pred cHHHHcC
Confidence 4777654
No 140
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=33.64 E-value=74 Score=25.71 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=11.8
Q ss_pred hhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 179 LRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 179 v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
+...+..-..||..++.-|..| +|.
T Consensus 68 lE~kv~kq~yEI~eL~~rV~dl-gKf 92 (106)
T 1j1d_B 68 LQEKFKQQKYEINVLRNRINDN-QKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHhhhHHHHHHHHHHHHh-cCc
Confidence 3333444455666666666666 443
No 141
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=33.53 E-value=66 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhh----hhhHHHHHHHHHHHHHHhhhhhhhhH
Q 021850 125 SLSDACNSVARQ----LEDVYSSISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 125 nmsnAv~svtKq----LeqVs~sL~~tKkhLsqRId~vD~kL 162 (306)
-|..+|..+=.| .+.+|+.|-.-=...+.|||.|+..+
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 345555554444 45677777777788888888887765
No 142
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=33.03 E-value=2.5e+02 Score=24.51 Aligned_cols=13 Identities=0% Similarity=0.179 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhcC
Q 021850 63 AEVSSVQQELSHV 75 (306)
Q Consensus 63 aQV~~LaqElr~L 75 (306)
.+++.|.+..+++
T Consensus 56 ~~~~~l~~~s~~I 68 (227)
T 1qu7_A 56 QTMRDISTSSQKI 68 (227)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 143
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=32.99 E-value=16 Score=33.30 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHH-------HHHHHHHHHHhhhhhhhhHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~s-------L~~tKkhLsqRId~vD~kLDeq~e 167 (306)
+-+++-..|...++..|..|.+. +...=.++.+||++|++++|+...
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~~ 89 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFL 89 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55688899999999999888653 445556788999999999988753
No 144
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.88 E-value=1.4e+02 Score=23.82 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhhhhhhHH
Q 021850 146 AAQRQLSSKITSVDRDVN 163 (306)
Q Consensus 146 ~tKkhLsqRId~vD~kLD 163 (306)
.++++|...|+.++.+++
T Consensus 47 ~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEID 64 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445554444433
No 145
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=32.82 E-value=26 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHH
Q 021850 122 TRRSLSDACNSVARQLEDVYSSIS 145 (306)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL~ 145 (306)
|+|-+++++..|+.++.+|-++|.
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999988877763
No 146
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=32.70 E-value=12 Score=33.96 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=37.9
Q ss_pred hhhhhHHHHHHHHhhhhhhHH-------HHHHHHHHHHHHhhhhhhhhHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVY-------SSISAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs-------~sL~~tKkhLsqRId~vD~kLDeq~e 167 (306)
+-+++-..|...+++.|..+. +++...=.+|.+||++|++|+|+...
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~~ 89 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKI 89 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999988884 34555666788999999999998753
No 147
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=32.42 E-value=87 Score=26.38 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHH---HHHHHHhHHHHHH
Q 021850 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQS---VRDIVQTLESKLI 205 (306)
Q Consensus 162 LDeq~eis~~ik~eV~~v~~dls~ig~Di~~---v~~~V~~Le~Ki~ 205 (306)
|.+.+++++.+.+++..+..++.+|-.|+.+ +....+.+..||.
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKII 50 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIV 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHH
Confidence 5566677777777777777777777777766 3344455555554
No 148
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=32.34 E-value=2.2e+02 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=20.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHhhhhh
Q 021850 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 183 ls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd 212 (306)
+.++..-++.|-..++.+=.+++.+|+.+.
T Consensus 63 ~~qL~~nFgAISssi~dIy~rLd~leAdaQ 92 (149)
T 1wyy_A 63 VKQLSSNFGAISSVLNDILSRLDKVEAEVQ 92 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777788888887654
No 149
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=32.34 E-value=1.7e+02 Score=22.41 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhh
Q 021850 136 QLEDVYSSISAAQRQLSSKITSV 158 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~v 158 (306)
.|.++.+.|.++|.-+..-||.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444
No 150
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=32.12 E-value=2.6e+02 Score=26.14 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 021850 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (306)
Q Consensus 147 tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki 204 (306)
.|..|...|+.|-..+.+..+-++.+.+++..-+..+ ..|..++...+..|...+
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l---~~d~~~f~~~~~~l~~~L 171 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSI---GHDVRAFGSNKELLQSIL 171 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHhhHHhHHHHHHHHH
Confidence 4555666666666555555444444444444433332 233334444444444433
No 151
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=31.79 E-value=1.5e+02 Score=21.71 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=35.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 021850 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (306)
Q Consensus 127 snAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~e 175 (306)
++=++.+.-+|+.|.+.+..+|+.| ..||.++-+.++++..+-+-
T Consensus 8 ~eRve~m~~~l~Evnekv~~ik~sL----~~LD~~lg~Lqdlsal~v~t 52 (56)
T 3e7k_A 8 FERVEQMSIQIKEVGDRVNYIKRSL----QSLDSQIGHLQDLSALTVDT 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHH
Confidence 4457888999999999999888854 56888888888888776543
No 152
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=31.57 E-value=1.8e+02 Score=23.98 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 021850 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ 166 (306)
++.+..-+.-+.++++...+++..--..+.++|...|+++|+..
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~ 56 (216)
T 2i0m_A 13 EQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQ 56 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHH
Confidence 45555556666666677767766555667777777777766553
No 153
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.56 E-value=62 Score=30.50 Aligned_cols=12 Identities=0% Similarity=-0.446 Sum_probs=8.4
Q ss_pred hhhhheeeeEEe
Q 021850 99 VIVAVGYGYVWW 110 (306)
Q Consensus 99 viGavGYgYmwW 110 (306)
.+-.+||||-+.
T Consensus 341 LV~L~gyC~s~~ 352 (487)
T 3oja_A 341 IDALKEQYRTVI 352 (487)
T ss_dssp HHHHHHHTCCCC
T ss_pred hhhHHHHhcChH
Confidence 467789997643
No 154
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=31.39 E-value=98 Score=22.26 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021850 159 DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (306)
Q Consensus 159 D~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~ 198 (306)
+.++...++-.+.|-+-|.++...++.+.--++.+++-+.
T Consensus 3 e~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 3 EGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566677777777777777777777775554
No 155
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=31.22 E-value=2.4e+02 Score=23.80 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 021850 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~ 166 (306)
++.+..-+.-+.++|+...+++..--..+.++|...|+.+|...
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~ 56 (235)
T 1sum_B 13 KKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQME 56 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHH
Confidence 44555555666666777777776655667777777777776654
No 156
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=31.12 E-value=1.6e+02 Score=21.62 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh----hhhHhHHHHHHHHHHH
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRAR 226 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k----Qd~tn~GV~~LC~f~~ 226 (306)
.+++..+..++.+++.=+..+..+|..=+.-|++||+| ++.+..|...|-.+..
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666777777777778887775 4555667777766554
No 157
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=30.93 E-value=1.5e+02 Score=26.30 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHHHHHh
Q 021850 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (306)
Q Consensus 163 Deq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~f~~~ 227 (306)
+-..+|++.|++-+.+-..|-++|..-=.+|++.|..+-..+.. ...+...-.-++.+|.|+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlIDE 71 (185)
T 4ack_A 8 EIILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVDE 71 (185)
T ss_dssp HHHHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 44567888898888888888888888888999999988888887 77888888889999999873
No 158
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=30.87 E-value=9.6 Score=33.51 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=9.8
Q ss_pred eEEEecCcccee
Q 021850 9 TFLVGAGILTSV 20 (306)
Q Consensus 9 ~ILvGAG~~GSV 20 (306)
++|||||++|..
T Consensus 4 V~IVGaGpaGl~ 15 (412)
T 4hb9_A 4 VGIIGAGIGGTC 15 (412)
T ss_dssp EEEECCSHHHHH
T ss_pred EEEECcCHHHHH
Confidence 567899999964
No 159
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=30.44 E-value=2.2e+02 Score=24.76 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~v 158 (306)
-.|+.+.+....+.+.+...+..+..+|+...++-...
T Consensus 114 kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~ 151 (290)
T 3i2w_A 114 KERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTE 151 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577778888888888999999999998877665443
No 160
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=30.43 E-value=7.5 Score=36.49 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.6
Q ss_pred eEEEecCccceeeec
Q 021850 9 TFLVGAGILTSVLAK 23 (306)
Q Consensus 9 ~ILvGAG~~GSVl~k 23 (306)
+|+||+|.+|+|++.
T Consensus 20 ~IIVGsG~aG~v~A~ 34 (526)
T 3t37_A 20 IVIVGGGSAGSLLAA 34 (526)
T ss_dssp EEEECCSHHHHHHHH
T ss_pred EEEECccHHHHHHHH
Confidence 599999999999885
No 161
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=29.90 E-value=2.7e+02 Score=25.60 Aligned_cols=67 Identities=12% Similarity=0.253 Sum_probs=45.9
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
..|.+-.++|...|+- |.--|.=...-|..+|.|+.+...+.+.+-+.+..+..+-.....|+..|.
T Consensus 152 ~~Lkk~~~~i~~~Lel----L~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 152 SALKSFSQTLVNSLEF----LNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4456666666666654 334455556678888999888888888888888777777665555555555
No 162
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.88 E-value=1.8e+02 Score=24.99 Aligned_cols=35 Identities=3% Similarity=-0.025 Sum_probs=17.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021850 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (306)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (306)
+..|.+.|...+.+-..+....+++|.+++.=+.+
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444333
No 163
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.45 E-value=13 Score=28.95 Aligned_cols=24 Identities=17% Similarity=0.363 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 186 IGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 186 ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.+.+++-++..+..|+.|+..+|.
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~ 36 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLER 36 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888888887765
No 164
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.35 E-value=2e+02 Score=22.49 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhchhhhhhHHHH
Q 021850 170 QATQEEVTILRGRSKLIGDEFQS 192 (306)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~Di~~ 192 (306)
+.|++|++.++.+.-.+..+++.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~e 49 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLRE 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444444443333
No 165
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=29.27 E-value=2.2e+02 Score=22.84 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 128 nAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
.|-.....-.+...+.|.+.|..|..+|..+..++++..+.......+=..+...++....|++..
T Consensus 58 ~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 58 QAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.16 E-value=1.6e+02 Score=29.32 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 021850 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (306)
Q Consensus 143 sL~~tKkhLsqRId~vD~kLDeq~eis~~ik 173 (306)
+|-..+|.+..+++.+-.+. ++++++|.
T Consensus 41 ~ld~~~r~~~~~~~~l~~~r---N~~sk~i~ 68 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLI---NICSKAVG 68 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 34566778888877777664 44444443
No 167
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.40 E-value=1.2e+02 Score=27.46 Aligned_cols=49 Identities=8% Similarity=0.163 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021850 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v 193 (306)
+..|++|+.|+..+-.++.....--+.|++|....+.-+.+.+.....+
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665555566665555555544444433333
No 168
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.22 E-value=83 Score=29.74 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=5.9
Q ss_pred HHHHHHhHHHHHHHH
Q 021850 193 VRDIVQTLESKLIEI 207 (306)
Q Consensus 193 v~~~V~~Le~Ki~~i 207 (306)
.+..+..|+.+|..+
T Consensus 38 ~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 38 NQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 169
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=28.15 E-value=57 Score=25.87 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=15.2
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
..|..||+.+..|+++|.......++.|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nv 30 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNV 30 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899988888888766555554444
No 170
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.99 E-value=2.4e+02 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhhh---HHHHHHHHHHHHHHh
Q 021850 126 LSDACNSVARQLED---VYSSISAAQRQLSSK 154 (306)
Q Consensus 126 msnAv~svtKqLeq---Vs~sL~~tKkhLsqR 154 (306)
|+|-.+++-..|+. -.+.|...|++|..-
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~ 33 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 44444444444433 233444444444433
No 171
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.65 E-value=2e+02 Score=21.89 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 021850 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (306)
Q Consensus 145 ~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k 210 (306)
..-|..|..-|+++-.-+++.+.=-+.=...=+.+..++..++.|++...-.=..||.||+++..-
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444322111111223444555666677788877778899999887654
No 172
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.48 E-value=52 Score=26.55 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 021850 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 172 ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+.++++.++..++.+..+-+.+++-+..||.+|....
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999998643
No 173
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=26.77 E-value=2.8e+02 Score=28.92 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021850 126 LSDACNSVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 126 msnAv~svtKqLeqVs~sL~~tKkhLsq 153 (306)
|.+|+.-|++++.++...++++|+++..
T Consensus 622 l~~ti~kv~~rv~~~~~~~~~~~~~~~~ 649 (771)
T 1h2v_C 622 LHSTIRKMNKHVLKIQKELEEAKEKLAR 649 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777777766666655
No 174
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.63 E-value=3.3e+02 Score=27.17 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC
Q 021850 65 VSSVQQELSHV 75 (306)
Q Consensus 65 V~~LaqElr~L 75 (306)
+.+=+++.-.+
T Consensus 19 ~~~~~~~~~~~ 29 (461)
T 3ghg_B 19 LDKKREEAPSL 29 (461)
T ss_dssp -----------
T ss_pred cccccCCCCCC
Confidence 33444444333
No 175
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=26.36 E-value=2.3e+02 Score=25.97 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 021850 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (306)
Q Consensus 160 ~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~ 209 (306)
.++-...+-.....-.++....|+....-+|..++..|.+.|.+|+.|+.
T Consensus 98 ~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 98 SRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 33444444444455556666666666666777777777777777776653
No 176
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=25.99 E-value=1.6e+02 Score=21.01 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHH
Q 021850 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (306)
Q Consensus 174 ~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~G 217 (306)
+++..+..++..++.=+..+..+|..=+.-|++||+|-+.|..=
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666667777777777778888888876655543
No 177
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=25.75 E-value=1e+02 Score=21.85 Aligned_cols=10 Identities=10% Similarity=0.518 Sum_probs=4.2
Q ss_pred HHHhhhhhhh
Q 021850 151 LSSKITSVDR 160 (306)
Q Consensus 151 LsqRId~vD~ 160 (306)
+++|++.++.
T Consensus 35 vt~rle~lEn 44 (47)
T 1aq5_A 35 VAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 178
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=25.51 E-value=1.7e+02 Score=22.26 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh--------hhhHhHHHHHHHHHHHhhhcC
Q 021850 167 EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK--------QDITTLGVKKLCDRARELENG 231 (306)
Q Consensus 167 eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~k--------Qd~tn~GV~~LC~f~~~le~~ 231 (306)
+....+...+-.+++.-..+|. ..+......+|.-++.+... .+.-..++..|++++..++++
T Consensus 37 ~~~~~l~R~~HTlKGsa~~~G~--~~l~~lah~~E~~l~~~r~~~~~~~~~l~~~l~~~~d~l~~~l~~~~~~ 107 (113)
T 2lch_A 37 EYWNKIYRLVHTMKEITETMGF--SSVAKVLHTIMNLVDKMLNSEIKITSDLIDKVKKKLDMVTRELDKKVSG 107 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTSTTTCCCHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred HHHHHHHHHHHhHHHHHHhcCh--HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555556666666665554 35666666667666655443 244556666666666655543
No 179
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=25.40 E-value=1.9e+02 Score=20.65 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=38.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhh-----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 129 Av~svtKqLeqVs~sL~~tKkhLsqRId~vD~k-----LDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
.+...++.+.+..+.|...-..|.+.++.|... =+...+.-...+..+..+..-|..|...+.......+.-|.+
T Consensus 10 ~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~~ 89 (97)
T 2vs0_A 10 EIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQ 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666665322 233333444444555555555555555555555444444433
No 180
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=25.28 E-value=12 Score=29.24 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=39.6
Q ss_pred eeeEEEecCccceeeecCCCccchhHHhHhHHHHHHHhhhcCCCCCCCC--chhHH--HHHHHHHHHHHHhcC--CCceE
Q 021850 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDR--KLFND--LLAEVSSVQQELSHV--PRSVI 80 (306)
Q Consensus 7 Kv~ILvGAG~~GSVl~knGkLsD~~~~lsg~lk~v~k~~k~~d~~~~~s--~~~~~--L~aQV~~LaqElr~L--sR~iT 80 (306)
||++..|+|++.|++++ |+-++..+..=-. ....-+.++..+ +.+|- +..||+..-.+++.. ..||.
T Consensus 5 kIll~Cg~G~sTS~l~~--k~~~~~~~~gi~~-----~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~~~v~ 77 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVS--KMRAQAEKYEVPV-----IIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVE 77 (106)
T ss_dssp EEEEECSSSTTTHHHHH--HHHHHHHHSCCSE-----EEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSSSSCCC
T ss_pred EEEEECCCchhHHHHHH--HHHHHHHHCCCCe-----EEEEecHHHHHhhccCCCEEEEccchhhhHHHHHHHhcCCCce
Confidence 79999999999997776 4554432100000 000111111111 11122 567888888888886 45777
Q ss_pred EEeC
Q 021850 81 IETS 84 (306)
Q Consensus 81 Vvn~ 84 (306)
|+++
T Consensus 78 vI~~ 81 (106)
T 1e2b_A 78 VIDS 81 (106)
T ss_dssp BCCH
T ss_pred EECH
Confidence 7775
No 181
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.28 E-value=1.6e+02 Score=23.88 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHh
Q 021850 186 IGDEFQSVRDIVQTLESKLIEIE 208 (306)
Q Consensus 186 ig~Di~~v~~~V~~Le~Ki~~ie 208 (306)
+...+..++.....|+.+|+..+
T Consensus 107 l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 107 VLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555443
No 182
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=25.15 E-value=13 Score=33.95 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=12.3
Q ss_pred eeeEEEecCccceeeec
Q 021850 7 KLTFLVGAGILTSVLAK 23 (306)
Q Consensus 7 Kv~ILvGAG~~GSVl~k 23 (306)
||+|| |||++|+.+++
T Consensus 18 kilvl-GaG~vG~~~~~ 33 (365)
T 3abi_A 18 KVLIL-GAGNIGRAIAW 33 (365)
T ss_dssp EEEEE-CCSHHHHHHHH
T ss_pred EEEEE-CCCHHHHHHHH
Confidence 55555 99999998764
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=25.10 E-value=4.9e+02 Score=26.25 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHh-hhh----hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021850 121 ATRRSLSDACNSVA-RQL----EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (306)
Q Consensus 121 VTKRnmsnAv~svt-KqL----eqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~ 195 (306)
.++.-+.+.|-.+. .++ +.|-+....-++++.+|++ +++..+..++++=+..-+..-.++....+.++.
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 669 (695)
T 2j69_A 596 TAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRIN------DDIVSRKSELDNLVKQKQTREINRESEFNRLKN 669 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q ss_pred HHHhHHHHHHHHhhh
Q 021850 196 IVQTLESKLIEIEGK 210 (306)
Q Consensus 196 ~V~~Le~Ki~~ie~k 210 (306)
...+.-.++..+++.
T Consensus 670 ~~~~~~~~~~~~~~~ 684 (695)
T 2j69_A 670 LQEDVIAQLQKIEAA 684 (695)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
No 184
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.98 E-value=2.5e+02 Score=21.93 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=35.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
.+++-++...+-..|+.++.++...++.....+ .....++..++.++..--.|-+.+-.+=..||..|.
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i-------~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRML-------TDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666665555554444443 334555555666666555555555555555555443
No 185
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=24.96 E-value=1.9e+02 Score=21.57 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhH
Q 021850 189 EFQSVRDIVQTL 200 (306)
Q Consensus 189 Di~~v~~~V~~L 200 (306)
++..+++.+.+|
T Consensus 37 ~~~~l~r~~HtL 48 (105)
T 1tqg_A 37 LINEAFRALHTL 48 (105)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 344444444444
No 186
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=24.84 E-value=62 Score=28.45 Aligned_cols=58 Identities=10% Similarity=0.186 Sum_probs=42.4
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHHH-------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSIS-------AAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL~-------~tKkhLsqRId~vD~kLDeq~eis~~ik~eV 176 (306)
|=+.++|-..|...++..|-.|.+... ..=.++.+||.+|++|+|++..-.=.-.-|+
T Consensus 34 ~AAD~kSTQ~AId~It~KvN~iiekmn~qf~~v~~ef~~~e~ri~~l~~kvdD~~~DvwsYnAEL 98 (174)
T 3ku3_B 34 YAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAEL 98 (174)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH
Confidence 457899999999999999988876543 2234677899999999998864443334443
No 187
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=24.84 E-value=4.2e+02 Score=25.15 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhH
Q 021850 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kL 162 (306)
+.|..+-..-..++.++.++++.|...+..+...|+.--+++
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~i 105 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQI 105 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666667777777777777777777777766655444333
No 188
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=24.53 E-value=2.3e+02 Score=21.45 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 021850 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
+...+-.+|+.+..+....++...++ ......++..++.++...-.|-+.+-.+=..||..|.
T Consensus 11 q~~~Le~~l~e~E~~~~~~l~~~q~~-------i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 11 QLAAKEAKLRDLEDSLARERDTSRRL-------LAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344455555555554444443333 3344566666666666665565555555555555544
No 189
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.08 E-value=1.8e+02 Score=24.47 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=11.1
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 021850 175 EVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (306)
Q Consensus 175 eV~~v~~dls~ig~Di~~v~~~V~~Le~K 203 (306)
.|.++-.++-.+..+|..+...|..|+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ig~L~~~ 50 (125)
T 4g2k_A 22 KIEEILSKIYHIENEIARIKKLIGNLVSR 50 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444333
No 190
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=23.89 E-value=49 Score=22.18 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=17.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHh
Q 021850 133 VARQLEDVYSSISAAQRQLSSK 154 (306)
Q Consensus 133 vtKqLeqVs~sL~~tKkhLsqR 154 (306)
++.+|.++..+|++|+.||.+=
T Consensus 10 IS~eL~~~n~sl~~A~~~l~~S 31 (38)
T 1svf_B 10 ISQNLAAVNKSLSDALQHLAQS 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999998887653
No 191
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.86 E-value=2.4e+02 Score=21.96 Aligned_cols=61 Identities=7% Similarity=0.040 Sum_probs=37.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021850 134 ARQLEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 134 tKqLeqVs~sL~~tKkhLsqRId~vD~--kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~ 194 (306)
+.-++.--+-....-..++++|..+-. .-++-+.....++..+.++.+-+.++.-++.++.
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555555555556666666666522 2256666777777777777777777666666554
No 192
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.56 E-value=3.8e+02 Score=26.60 Aligned_cols=72 Identities=8% Similarity=0.037 Sum_probs=48.1
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHHHH
Q 021850 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (306)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~---ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~LC~ 223 (306)
-.+|-.+|.+-.+...-.+.++.+-+++...+.+ -+.|.+.+..-+..|..+|..+|....-...-+..++.
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555555555556555555554433 45678888888888999999888888777777766644
No 193
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=23.50 E-value=24 Score=35.34 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=8.3
Q ss_pred eeeeEEeccc
Q 021850 104 GYGYVWWKGW 113 (306)
Q Consensus 104 GYgYmwWKGw 113 (306)
..+|.||.||
T Consensus 462 ~~~~~~~~G~ 471 (546)
T 1fgj_A 462 PGGWTYTEGW 471 (546)
T ss_dssp GGGTSSSSTH
T ss_pred CCccceecch
Confidence 3469999999
No 194
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=23.46 E-value=2.7e+02 Score=21.81 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=28.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHH
Q 021850 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (306)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~G 217 (306)
|.++...+.|..++-..+..-|.+=.+-+.+|...++....-|+.=...+..-...|..+..-
T Consensus 23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk 85 (109)
T 3hd7_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 85 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 344444444444444444444444444444444444444444443334443333344433333
No 195
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.46 E-value=3e+02 Score=22.38 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=45.7
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHH----HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHH
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~----eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (306)
+.|..+..++.-..|+.+.=-++-+. .++.++.++++....-+.++.-++.||-+=|.+|-..-.|..-+-.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 44555555555555544443333333 3666777777777777888888888888888777776666655443
No 196
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.23 E-value=23 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.590 Sum_probs=22.8
Q ss_pred hhheeeeEEecccCCCchhhhhhhhHHH
Q 021850 101 VAVGYGYVWWKGWKLPDMMFATRRSLSD 128 (306)
Q Consensus 101 GavGYgYmwWKGws~SDlMyVTKRnmsn 128 (306)
|.+=| ++.|||++-+|--|....||.+
T Consensus 24 g~~~Y-lVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 24 GKLEY-LVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp TEEEE-EEEETTSCTTTCEEEEGGGCCC
T ss_pred CcEEE-EEEECCCCCccCccccHHHCCC
Confidence 44445 8999999999999999999986
No 197
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=23.19 E-value=1.4e+02 Score=26.01 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHHHHhhhhh
Q 021850 193 VRDIVQTLESKLIEIEGKQD 212 (306)
Q Consensus 193 v~~~V~~Le~Ki~~ie~kQd 212 (306)
.+..+..+.+-+.+...+++
T Consensus 105 ~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 105 AEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 198
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.84 E-value=2.5e+02 Score=22.40 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHHhhhhh
Q 021850 139 DVYSSISAAQRQLSSKITSV 158 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~v 158 (306)
||...|+.+-..|.+-+|.+
T Consensus 29 QVQqELs~tfarLc~~Vd~t 48 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMT 48 (96)
T ss_dssp ------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 199
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=22.78 E-value=47 Score=29.01 Aligned_cols=26 Identities=8% Similarity=0.067 Sum_probs=17.7
Q ss_pred hhHhHHHHHHHHHHHhhhcC-CCccccc
Q 021850 212 DITTLGVKKLCDRARELENG-RPTELVQ 238 (306)
Q Consensus 212 d~tn~GV~~LC~f~~~le~~-~~~~~~Q 238 (306)
-.||+||.||++|.+ |-.. -.|....
T Consensus 67 ~LTnEGIeYLR~yLh-LP~e~IVPaTlk 93 (162)
T 2xzm_7 67 YLNKEGCEYLKTKLG-ISADNVIPKTFK 93 (162)
T ss_dssp EECHHHHHHHHHHHC-SSTTSCCCGGGS
T ss_pred EEchHHHHHHHHHhC-CCccccccchhc
Confidence 358999999999995 3333 4444443
No 200
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=22.73 E-value=47 Score=33.65 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=38.5
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHH-------HHHHHHHHHhhhhhhhhHHHHH
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIV 166 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL-------~~tKkhLsqRId~vD~kLDeq~ 166 (306)
|=|-++|=.+|...++..|..+.+.. ...=.+|..||++|++|+|+..
T Consensus 368 ~AAD~kSTQ~AId~It~k~N~iiekmn~qf~~i~~ef~~~e~ri~~l~~~~~D~~ 422 (515)
T 4f23_A 368 IAADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMIADRVDDAV 422 (515)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHTCCSCCSCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44779999999999999998887643 2333578899999999999974
No 201
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* 3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Probab=22.64 E-value=29 Score=35.12 Aligned_cols=80 Identities=10% Similarity=0.141 Sum_probs=50.4
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHH-------HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH---Hhhhchhhhhh
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIVEISQATQEEVT---ILRGRSKLIGD 188 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL-------~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~---~v~~dls~ig~ 188 (306)
|=|-+++=..|...++..|..+-+.. ...=.+|.+||++|.+++|+...=.=.-..|+- |=+..+..-..
T Consensus 374 ~AAD~kSTQ~AId~It~K~N~iiek~n~qf~~i~~ef~~~e~ri~~l~~~v~D~~~dvwsynaeLLV~leN~~Tld~~Ds 453 (509)
T 2wr1_A 374 YAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDS 453 (509)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhccHHHHhhhccchhhhhhhh
Confidence 34668899999999999888875532 233357889999999999987432222223322 22334444455
Q ss_pred HHHHHHHHHH
Q 021850 189 EFQSVRDIVQ 198 (306)
Q Consensus 189 Di~~v~~~V~ 198 (306)
+|.++++.|+
T Consensus 454 nv~~l~ekvr 463 (509)
T 2wr1_A 454 NVKNLYDKVR 463 (509)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665443
No 202
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.61 E-value=3.2e+02 Score=22.33 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
+.+++...+..+++.|+.=.+--++=-|...+-.+..+.+|.++.+.+..-...+..++..+...-
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q 72 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445554444433333334445555666677777777777766666666666555443
No 203
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=22.42 E-value=17 Score=31.31 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.2
Q ss_pred eEEEecCccceeee
Q 021850 9 TFLVGAGILTSVLA 22 (306)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (306)
+++||||++|..++
T Consensus 5 V~IIGaG~~Gl~~A 18 (336)
T 1yvv_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 68999999986543
No 204
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=22.41 E-value=3.3e+02 Score=22.46 Aligned_cols=43 Identities=7% Similarity=0.241 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 021850 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (306)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq 165 (306)
++.+..-+..+.+.|+...+++..--..+..+|...|+++|+.
T Consensus 17 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l 59 (227)
T 1t72_A 17 KEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLL 59 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHH
Confidence 3444445555555666666666554556667777777776654
No 205
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=22.38 E-value=26 Score=35.75 Aligned_cols=12 Identities=50% Similarity=1.157 Sum_probs=10.3
Q ss_pred hheeeeEEeccc
Q 021850 102 AVGYGYVWWKGW 113 (306)
Q Consensus 102 avGYgYmwWKGw 113 (306)
.|-|||.||||.
T Consensus 521 ivty~~f~wkgk 532 (584)
T 4dpv_Z 521 IVTYSDFWWKGK 532 (584)
T ss_dssp CCEEEEEEEEEE
T ss_pred EEEEeeEEEccE
Confidence 468999999995
No 206
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=22.38 E-value=3.6e+02 Score=27.09 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=52.0
Q ss_pred Cchhhhhhh--hHHHHHHHHhhhhhhHHHHHHHHHH-----------------------------HHHHhhhhhhhhHHH
Q 021850 116 PDMMFATRR--SLSDACNSVARQLEDVYSSISAAQR-----------------------------QLSSKITSVDRDVNK 164 (306)
Q Consensus 116 SDlMyVTKR--nmsnAv~svtKqLeqVs~sL~~tKk-----------------------------hLsqRId~vD~kLDe 164 (306)
.|-+|+.-| ++.++...+.+.+++..+.....++ ++.++-..++..+.=
T Consensus 329 ~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~i 408 (671)
T 1mqs_A 329 NDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNI 408 (671)
T ss_dssp SCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 799999888 7889999999999988887654332 455666777777777
Q ss_pred HHHHHHHHH----HHHHHhhhch
Q 021850 165 IVEISQATQ----EEVTILRGRS 183 (306)
Q Consensus 165 q~eis~~ik----~eV~~v~~dl 183 (306)
..+|.+.++ +++.++..++
T Consensus 409 a~~l~~~i~~~~l~~~~e~EQ~l 431 (671)
T 1mqs_A 409 FAALLSQLESKSLDTFFEVEQDP 431 (671)
T ss_dssp HHHHHHHHHTTTCHHHHHHTSCC
T ss_pred HHHHHHHHhHhhHHHHHHHHHHH
Confidence 778888887 4577777776
No 207
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=22.09 E-value=3.8e+02 Score=23.03 Aligned_cols=77 Identities=6% Similarity=0.159 Sum_probs=41.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH---HHHHHHHHHhHHHHHHHH
Q 021850 132 SVARQLEDVYSSISAAQRQLSS-KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE---FQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsq-RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D---i~~v~~~V~~Le~Ki~~i 207 (306)
.++..+|.+-+.+.++=+.+.- +++.++..+.++.++....-+++.++=..+.+++.| +...-.-|..+|.+.+.+
T Consensus 98 ~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l 177 (227)
T 3l39_A 98 DLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDV 177 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555543 344455555555555444444444444444444335 444444567777777755
Q ss_pred h
Q 021850 208 E 208 (306)
Q Consensus 208 e 208 (306)
.
T Consensus 178 ~ 178 (227)
T 3l39_A 178 Y 178 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 208
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=21.94 E-value=38 Score=29.22 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=11.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 021850 132 SVARQLEDVYSSISAAQRQLSSKITSV 158 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsqRId~v 158 (306)
.+.+||.+=-.+|++.=..+-+|+|.+
T Consensus 61 ~l~~qL~~nFgAISssi~dIy~rLd~l 87 (149)
T 1wyy_A 61 TLVKQLSSNFGAISSVLNDILSRLDKV 87 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444
No 209
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=21.74 E-value=4.1e+02 Score=23.30 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 021850 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (306)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL~~tKkhLsqR 154 (306)
+.+.+...-+-|.+......+..+|+..-+.
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~ 169 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAA 169 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777788888888888888765443
No 210
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=21.71 E-value=1.3e+02 Score=21.59 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tKkhLsqRI 155 (306)
+=.+||.+++..+.++-.++.+.++++..-|
T Consensus 15 ~TNeAV~~L~~g~~~la~Av~~iQ~~IN~~i 45 (51)
T 3kpe_A 15 STNKAVVSLSNGVSVLTSKVLDLKNYIDKQL 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999988887655
No 211
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=21.70 E-value=1.5e+02 Score=25.47 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=38.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 021850 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (306)
Q Consensus 134 tKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le 201 (306)
-.=|+.+-+.....-+++..+|+.+++.+-+.. ....-.++..++..+-.++.=+...+.++..|.
T Consensus 174 ~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~--~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 239 (269)
T 2bbh_A 174 YSLIDALVDDYFVLLEKIDDEIDVLEEEVLERP--EKETVQRTHQLKRNLVELRKTIWPLREVLSSLY 239 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888888888888888764321 123334455555555555555555555555443
No 212
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=21.69 E-value=2.3e+02 Score=20.36 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhH----hHHHHHHHH
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT----TLGVKKLCD 223 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~t----n~GV~~LC~ 223 (306)
.+++..+..++..++.=+..+..+|..=+.-|++||+|-+-| ..|...|-.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDK 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666777777777778888888765544 444444433
No 213
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=21.67 E-value=25 Score=32.25 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=11.3
Q ss_pred eEEEecCccceeee
Q 021850 9 TFLVGAGILTSVLA 22 (306)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (306)
+|+||||++|-..+
T Consensus 13 VvIIGaGisGLsaA 26 (513)
T 4gde_A 13 VLVIGAGPTGLGAA 26 (513)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 78999999986543
No 214
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=21.67 E-value=1.2e+02 Score=22.06 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhhhHhHHHHHH
Q 021850 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (306)
Q Consensus 189 Di~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (306)
|++.+...+..|...+.++..---.-.+|+.+|
T Consensus 3 dl~~~~~si~~l~~ql~sla~vvlQNRraLD~L 35 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVLQNRRGLDLL 35 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554333333455554
No 215
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.60 E-value=2.4e+02 Score=20.51 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=21.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021850 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDR 160 (306)
Q Consensus 130 v~svtKqLeqVs~sL~~tKkhLsqRId~vD~ 160 (306)
.+.+-.|++.|...+..+...+..|-++|+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~ 36 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSD 36 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777665543
No 216
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=21.35 E-value=43 Score=26.36 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=52.7
Q ss_pred eeeEEe-cccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHH-HHHHHhhh
Q 021850 105 YGYVWW-KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQ-EEVTILRG 181 (306)
Q Consensus 105 YgYmwW-KGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq-~eis~~ik-~eV~~v~~ 181 (306)
-.|.|| +||.|. .+.+.++..++.....=..+..||-.++.+-.-. .+..+... ++...-..
T Consensus 25 ~~~hw~v~g~~f~---------------~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~~~~~s~i~~~~~~~~ 89 (146)
T 1jig_A 25 HNYHWYVTGPHFF---------------TLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSSVNEGTSKES 89 (146)
T ss_dssp HHHHHHCCSTTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCSCCCCSCCC
T ss_pred hhhhhcccCcCHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCcCCCCCCCCC
Confidence 356777 888653 4677888888888888888888998888774321 11111100 00100011
Q ss_pred chhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhH
Q 021850 182 RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (306)
Q Consensus 182 dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~ 216 (306)
..+.+..+++..+.++..+..-++..+...|++..
T Consensus 90 ~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~ 124 (146)
T 1jig_A 90 AEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSA 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 22334555555555555555545544544555443
No 217
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=21.35 E-value=20 Score=33.63 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
++.++|..+-+++.+.-|.--.++++-.++...++++| .++..+++.++..+..||.|+.+.
T Consensus 6 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~ 67 (385)
T 3p8q_A 6 LIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDL-------MKVQEELTKSGTRLFDLEQKLASG 67 (385)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccc
Confidence 33334444433343333333333333334455555555 445555566666666666666554
No 218
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=21.15 E-value=3e+02 Score=21.51 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=26.3
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhH-------HHHHHHHhhhhhh----HhHHHHHHHHHH
Q 021850 174 EEVTILRGRSKLIGDEFQSVRDIVQTL-------ESKLIEIEGKQDI----TTLGVKKLCDRA 225 (306)
Q Consensus 174 ~eV~~v~~dls~ig~Di~~v~~~V~~L-------e~Ki~~ie~kQd~----tn~GV~~LC~f~ 225 (306)
+++.+=..++.+|..++..+++++..| +.-|++||+|-+. ...|...|-.+.
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444 5666677776544 445555554443
No 219
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.06 E-value=4.3e+02 Score=23.26 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhc-----------hhhhhhHHHHHHHHHHhHHHHHH
Q 021850 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-----------SKLIGDEFQSVRDIVQTLESKLI 205 (306)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d-----------ls~ig~Di~~v~~~V~~Le~Ki~ 205 (306)
|+.+.++=..-..+|..-|+....+.-+...-....+.|+...+.. ++.+..++..++.....|-.+|-
T Consensus 33 l~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 33 LVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444443333 33345556666666666666666
Q ss_pred HHhhhhhhHhHHHHHHHHHHHhh
Q 021850 206 EIEGKQDITTLGVKKLCDRAREL 228 (306)
Q Consensus 206 ~ie~kQd~tn~GV~~LC~f~~~l 228 (306)
.+|-..|--..-...+|.-...+
T Consensus 113 eLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 113 ELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhhHHHH
Confidence 66666666666666665544433
No 220
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=21.05 E-value=2.3e+02 Score=20.20 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=29.7
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhhhHhH
Q 021850 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (306)
Q Consensus 173 k~eV~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~ie~kQd~tn~ 216 (306)
.+++..+..++..++.=+..+..+|..=+.-|++||+|-+-|..
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566666666666666777777777777888888886555543
No 221
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=21.01 E-value=41 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=22.2
Q ss_pred hhheeeeEEecccCCCchhhhhhhhHHH
Q 021850 101 VAVGYGYVWWKGWKLPDMMFATRRSLSD 128 (306)
Q Consensus 101 GavGYgYmwWKGws~SDlMyVTKRnmsn 128 (306)
|.+=| ++.|||++-+|--|....||.+
T Consensus 27 g~~~Y-lVKWkGy~~~~~TWEp~~~L~~ 53 (74)
T 2kvm_A 27 GKVEY-LVKWKGWPPKYSTWEPEEHILD 53 (74)
T ss_dssp TEEEE-EEEETTSCGGGCEEEETTTCSC
T ss_pred CcEEE-EEEEcCCCCccCeEeeHHHCCC
Confidence 33445 7899999999999999999985
No 222
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=20.99 E-value=1.9e+02 Score=29.19 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHH
Q 021850 132 SVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsq 153 (306)
+++.+|.+|..+|+.++.||.+
T Consensus 427 DISseL~~vn~sl~~a~~~I~~ 448 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQ 448 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999998764
No 223
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.84 E-value=7.2e+02 Score=26.84 Aligned_cols=82 Identities=7% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhhhHHH------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh----hhchhhhhhHHHHHHH
Q 021850 126 LSDACNSVARQLEDVYS------SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL----RGRSKLIGDEFQSVRD 195 (306)
Q Consensus 126 msnAv~svtKqLeqVs~------sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v----~~dls~ig~Di~~v~~ 195 (306)
+.+-|+.+-+.++.+-. .+..--+.|...|+.++.++++...-.+.++++...+ ++.++++..+...+++
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444433322 2223346777888888887777665555555554444 3444555555556666
Q ss_pred HHHhHHHHHHHH
Q 021850 196 IVQTLESKLIEI 207 (306)
Q Consensus 196 ~V~~Le~Ki~~i 207 (306)
.+..||..+...
T Consensus 1038 q~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1038 EKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
No 224
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.77 E-value=2.7e+02 Score=20.88 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=13.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 154 KITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
.++.+..++++..+-...+..+++.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555555555555555555555543
No 225
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=20.71 E-value=52 Score=26.59 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=33.5
Q ss_pred eeeEEe-cccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhhH
Q 021850 105 YGYVWW-KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (306)
Q Consensus 105 YgYmwW-KGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqRId~vD~kL 162 (306)
..|.|| +||.|. .+...++..++.....=..+..||-.++.+-
T Consensus 27 ~~~hw~v~g~~f~---------------~lh~~~~~~~~ee~~had~iaERI~~lGg~p 70 (156)
T 2d5k_A 27 HNFHWYVKGPNFF---------------SLHVKFEELYNEASQYVDELAERILAVGGNP 70 (156)
T ss_dssp HHHHHHCCSTTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HhheeeeECCChH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 456777 888653 5677888888888888888899998888773
No 226
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=20.63 E-value=65 Score=22.91 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=17.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHH
Q 021850 132 SVARQLEDVYSSISAAQRQLSS 153 (306)
Q Consensus 132 svtKqLeqVs~sL~~tKkhLsq 153 (306)
+++.+|.++..+|++|+.||.+
T Consensus 11 DISseL~~iNnsL~~A~~~I~e 32 (48)
T 2fyz_B 11 DISTELSKVNASLQNTVKYIKE 32 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888764
No 227
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=20.57 E-value=64 Score=27.81 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=33.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 021850 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (306)
Q Consensus 133 vtKqLeqVs~sL~~tKkhLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Di~~v~~~V~~L 200 (306)
+-.=|+.+.+.....-+++..+|+.+++++-+. ......++..+|..+-.++.=+...+.++..|
T Consensus 149 l~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L 213 (264)
T 3nvo_A 149 LVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ---QIPPRGFLALLRKQLIVMRRYMAPQRDVYARL 213 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344456666666677777777777777776432 22233444455555444444444444444444
No 228
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.56 E-value=1.5e+02 Score=22.38 Aligned_cols=32 Identities=6% Similarity=0.025 Sum_probs=15.5
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 021850 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (306)
Q Consensus 176 V~~v~~dls~ig~Di~~v~~~V~~Le~Ki~~i 207 (306)
++++...+..-.+-|+.++++|-.-...|+.+
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L 47 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARN 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555444444443
No 229
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.53 E-value=4e+02 Score=22.67 Aligned_cols=36 Identities=14% Similarity=0.362 Sum_probs=31.6
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 021850 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (306)
Q Consensus 119 MyVTKRnmsnAv~svtKqLeqVs~sL~~tKkhLsqR 154 (306)
|=..|.-|+.-+..+=...|.+.+.+.+.|+...+|
T Consensus 12 ~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~R 47 (141)
T 3okq_A 12 MEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAER 47 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 455688899999999999999999999999988877
No 230
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=20.45 E-value=4.4e+02 Score=23.13 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=19.1
Q ss_pred HHhhhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHH
Q 021850 152 SSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEF 190 (306)
Q Consensus 152 sqRId~vD~kLDeq-~eis~~ik~eV~~v~~dls~ig~Di 190 (306)
.+.++.+-.+|.-- .++...+.+++.++|..++-+..++
T Consensus 87 ~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 87 SKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp SCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333555555433 2355555555555555555544444
No 231
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=20.45 E-value=1.5e+02 Score=23.06 Aligned_cols=24 Identities=4% Similarity=0.207 Sum_probs=12.4
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHH
Q 021850 125 SLSDACNSVARQLEDVYSSISAAQ 148 (306)
Q Consensus 125 nmsnAv~svtKqLeqVs~sL~~tK 148 (306)
+|+++...++.-|.++.+.+..--
T Consensus 20 ~i~~g~~tts~AL~kiQdVVN~q~ 43 (77)
T 2bez_C 20 QIQESLTTTSTALGKLQDVVNQNA 43 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554433
No 232
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=20.35 E-value=58 Score=28.65 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHHHhhhhhhHHH-------HHHHHHHHHHHhhhhhhhhHHHHHH
Q 021850 121 ATRRSLSDACNSVARQLEDVYS-------SISAAQRQLSSKITSVDRDVNKIVE 167 (306)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~-------sL~~tKkhLsqRId~vD~kLDeq~e 167 (306)
+-+++-.+|...++..|..+.+ ++...=.++.+||.+|++++|+...
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~~ 89 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRA 89 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999888854 2334445889999999999988753
No 233
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=20.29 E-value=30 Score=24.71 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=27.1
Q ss_pred eeeEEecccCCCchhhhhhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 021850 105 YGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ 148 (306)
Q Consensus 105 YgYmwWKGws~SDlMyVTKRnmsnAv~svtKqLeqVs~sL~~tK 148 (306)
+-++.|||++-+|--+-...||.++-. -|++.....+..|
T Consensus 21 ~YlVkWkGy~~~~~TWEp~~nl~~~~~----li~~f~~~~~~~k 60 (62)
T 3lwe_A 21 LYKVRWKGYTSDDDTWEPEIHLEDCKE----VLLEFRKKIAENK 60 (62)
T ss_dssp EEEEEETTSCGGGCEEEEHHHHTTCHH----HHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCcCCCeeeHhHhhccHH----HHHHHHHhhHhhc
Confidence 346899999988999999999976443 3344444444433
No 234
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.22 E-value=5.4e+02 Score=24.07 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=6.2
Q ss_pred HHHHHHHHhcC
Q 021850 65 VSSVQQELSHV 75 (306)
Q Consensus 65 V~~LaqElr~L 75 (306)
.+.+++.|..+
T Consensus 246 ~~~l~~~i~~i 256 (406)
T 4dyl_A 246 HREMAAAAARI 256 (406)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 35555666555
No 235
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.20 E-value=1.5e+02 Score=20.86 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 021850 149 RQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (306)
Q Consensus 149 khLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (306)
..|...||+|.++|...++--+.|.+++.-
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467888899999888888777777777643
No 236
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=20.20 E-value=92 Score=22.94 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=5.2
Q ss_pred HHHhhhchhhhhhHHHHHH
Q 021850 176 VTILRGRSKLIGDEFQSVR 194 (306)
Q Consensus 176 V~~v~~dls~ig~Di~~v~ 194 (306)
..+++.-|..|+.-++.-+
T Consensus 62 ~~~l~~~L~~i~~~l~~a~ 80 (96)
T 3h6p_C 62 LEDLVRAYQSMSGTHESNT 80 (96)
T ss_dssp HHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 237
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.07 E-value=1.7e+02 Score=20.80 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021850 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (306)
Q Consensus 150 hLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl 183 (306)
+|..+++.+..+=....+.-+.-++++..+++.+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
Done!