BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021851
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
KWT EE + F L +GR W +I + +G++T +Q++S+A+++F V+
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59
>pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 178
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 17 RKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
R P I K +WT EE + A++ YGR ++ I + +G K+ VQ+++ FF R
Sbjct: 67 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 122
Query: 77 ESN 79
N
Sbjct: 123 RFN 125
>pdb|2X0L|B Chain B, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 133
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 17 RKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
R P I K +WT EE + A++ YGR ++ I + +G K+ VQ+++ FF R
Sbjct: 64 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 119
Query: 77 ESN 79
N
Sbjct: 120 RFN 122
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 17 RKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
R P I K +WT EE + A++ YGR ++ I + +G K+ VQ+++ FF R
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 426
Query: 77 ESN 79
N
Sbjct: 427 RFN 429
>pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|B Chain B, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|B Chain B, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 235
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 17 RKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
R P I K +WT EE + A++ YGR ++ I + +G K+ VQ+++ FF R
Sbjct: 124 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 179
Query: 77 ESN 79
N
Sbjct: 180 RFN 182
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 29 WTEEEHQRFLDALKMY------GRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
WT EE ++ L Y R W++I + +G +TA Q+ S QK+F K+ +
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 66
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 25 QREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSS 82
++ +W+ EE ++ L K+ WR I +G +TA Q H + K + +G S
Sbjct: 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDSGPS 64
>pdb|2LTP|A Chain A, Solution Structure Of The Sant2 Domain Of The Human
Nuclear Receptor Corepressor 2 (Ncor2), Northeast
Structural Genomics Consortium (Nesg) Target Id Hr4636e
Length = 89
Score = 30.8 bits (68), Expect = 0.88, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 27 EKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRS 65
+ WTEEE L +GR W I VG+KT Q ++
Sbjct: 17 QGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKN 55
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSE 83
WT+EE Q+ ++ +K YG + W I +H+ + Q R + V++S+ + E
Sbjct: 10 WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 65
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSE 83
WT+EE QR ++ ++ YG + W I +H+ + Q R + V++++ + E
Sbjct: 30 WTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 85
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIR 64
WT+EE QR ++ ++ YG + W I +H+ + Q R
Sbjct: 6 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCR 42
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIR 64
WT+EE QR + ++ YG + W I +H+ + Q R
Sbjct: 6 WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCR 42
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 29 WTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFS 72
WT +E L+A+ G G W+ + + TKT + H K+FS
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIR 64
WT+EE QR + ++ YG + W I +H+ + Q R
Sbjct: 6 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCR 42
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSESS 85
WT+EE QR + ++ YG + W I +H+ + Q R + V++++ + E
Sbjct: 61 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
Length = 105
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSE 83
WT+EE QR + ++ YG + W I +H+ + Q R + V++++ + E
Sbjct: 7 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSE 83
WT+EE QR + ++ YG + W I +H+ + Q R + V++++ + E
Sbjct: 7 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
>pdb|2YQK|A Chain A, Solution Structure Of The Sant Domain In
Arginine-Glutamic Acid Dipeptide (Re) Repeats
Length = 63
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 29 WTEEEHQRFLDALKMYGRGWRQIEEHV 55
WTE+E +RF+ L+ YG+ + +I + +
Sbjct: 12 WTEDEVKRFVKGLRQYGKNFFRIRKEL 38
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 180 IEKENEYVTSISFPKEEKISTLPAHLSASSNVEELASVSKDSVYP 224
IE + +TS +E +ST+P ++ + +E +S YP
Sbjct: 110 IEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYP 154
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 146 FNSDTLGCAASDQQNGCSSPTSCTTEMHS--VNLLPIEKENEYVTSISFPKEEKISTLPA 203
+ L A D G ++ C T M ++LLP EK E + +++F + +K + A
Sbjct: 145 LTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHA 204
Query: 204 HLSASSNV 211
LSA + +
Sbjct: 205 RLSADATL 212
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 164 SPTSCTTEMHSVNLLPIE----KENEY--VTS--ISFPKEEKISTLPAHLSASSNVEELA 215
+PTSCT + +V + IE EN VTS I+F K+ P H + N EEL+
Sbjct: 155 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELS 214
Query: 216 SVSK 219
S+ K
Sbjct: 215 SILK 218
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 154 AASDQQNGCSSPTSCTTEMHS--VNLLPIEKENEYVTSISFPKEEKISTLPAHLSASSNV 211
A D G ++ C T M ++LLP EK E + +++F + +K + A LSA + +
Sbjct: 39 AVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATL 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.123 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,856,862
Number of Sequences: 62578
Number of extensions: 270121
Number of successful extensions: 494
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 35
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)