Query 021851
Match_columns 306
No_of_seqs 196 out of 696
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:16:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.7 2E-17 6.9E-22 128.1 6.2 63 10-72 2-64 (79)
2 2yum_A ZZZ3 protein, zinc fing 99.6 1.8E-16 6.3E-21 119.4 6.7 54 24-77 6-65 (75)
3 2cu7_A KIAA1915 protein; nucle 99.6 6.3E-16 2.1E-20 116.3 8.4 54 24-77 7-60 (72)
4 2elk_A SPCC24B10.08C protein; 99.6 4.1E-15 1.4E-19 108.2 6.2 48 25-72 8-57 (58)
5 1x41_A Transcriptional adaptor 99.5 7.6E-15 2.6E-19 107.1 6.3 50 24-73 6-56 (60)
6 1guu_A C-MYB, MYB proto-oncoge 99.5 3.8E-14 1.3E-18 99.8 6.2 48 25-72 2-50 (52)
7 2iw5_B Protein corest, REST co 99.5 5.4E-14 1.8E-18 128.6 6.3 64 11-74 118-181 (235)
8 1gvd_A MYB proto-oncogene prot 99.4 7.3E-14 2.5E-18 98.6 5.2 48 25-72 2-50 (52)
9 2din_A Cell division cycle 5-l 99.4 2.7E-13 9.1E-18 100.0 7.9 56 24-80 7-62 (66)
10 2d9a_A B-MYB, MYB-related prot 99.4 1.4E-13 4.7E-18 99.7 5.7 50 24-73 6-56 (60)
11 1w0t_A Telomeric repeat bindin 99.4 7.5E-13 2.6E-17 94.0 6.8 47 26-72 2-51 (53)
12 1ity_A TRF1; helix-turn-helix, 99.4 9.3E-13 3.2E-17 98.0 7.1 50 24-73 8-60 (69)
13 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.3E-12 4.4E-17 100.2 7.8 49 24-72 16-68 (73)
14 2dim_A Cell division cycle 5-l 99.4 6.7E-13 2.3E-17 98.9 5.8 50 24-73 7-57 (70)
15 3sjm_A Telomeric repeat-bindin 99.3 2.3E-12 7.8E-17 96.0 7.1 48 25-72 10-60 (64)
16 2ltp_A Nuclear receptor corepr 99.0 1.2E-13 4.2E-18 108.3 0.0 53 24-76 14-66 (89)
17 2xag_B REST corepressor 1; ami 99.3 1.8E-12 6E-17 128.6 6.4 62 13-74 367-428 (482)
18 2eqr_A N-COR1, N-COR, nuclear 99.3 7.1E-12 2.4E-16 92.0 7.2 44 24-67 10-53 (61)
19 2cjj_A Radialis; plant develop 99.3 8E-12 2.7E-16 99.8 7.5 56 25-80 7-66 (93)
20 2k9n_A MYB24; R2R3 domain, DNA 99.2 2.1E-11 7E-16 97.1 7.4 53 25-77 52-104 (107)
21 3osg_A MYB21; transcription-DN 99.2 2.4E-11 8.3E-16 99.4 6.7 49 24-72 9-57 (126)
22 3zqc_A MYB3; transcription-DNA 99.2 1.8E-11 6.1E-16 100.6 5.0 52 24-75 52-103 (131)
23 3osg_A MYB21; transcription-DN 99.2 3.2E-11 1.1E-15 98.7 6.3 51 24-74 60-110 (126)
24 2llk_A Cyclin-D-binding MYB-li 99.2 4.2E-11 1.5E-15 91.9 6.5 47 21-68 18-64 (73)
25 2k9n_A MYB24; R2R3 domain, DNA 99.2 3.4E-11 1.1E-15 95.9 6.1 47 26-72 1-48 (107)
26 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.6E-11 8.7E-16 95.5 5.3 49 25-73 55-103 (105)
27 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.6E-11 8.7E-16 95.5 5.3 47 25-71 3-50 (105)
28 3zqc_A MYB3; transcription-DNA 99.1 5.5E-11 1.9E-15 97.7 4.5 47 26-72 2-49 (131)
29 1h8a_C AMV V-MYB, MYB transfor 99.1 1.1E-10 3.7E-15 95.2 5.9 49 24-72 25-74 (128)
30 2ckx_A NGTRF1, telomere bindin 99.0 3.4E-10 1.1E-14 88.7 7.0 48 27-74 1-53 (83)
31 1irz_A ARR10-B; helix-turn-hel 99.0 5.1E-10 1.7E-14 84.6 7.7 55 23-77 4-63 (64)
32 1h8a_C AMV V-MYB, MYB transfor 99.0 1E-10 3.6E-15 95.3 4.2 48 25-72 78-125 (128)
33 1wgx_A KIAA1903 protein; MYB D 99.0 7.9E-10 2.7E-14 85.4 6.6 46 25-70 7-56 (73)
34 2juh_A Telomere binding protei 99.0 9.6E-10 3.3E-14 91.8 7.6 53 21-73 12-69 (121)
35 2roh_A RTBP1, telomere binding 99.0 1.3E-09 4.4E-14 91.2 8.2 53 22-74 27-84 (122)
36 2yqk_A Arginine-glutamic acid 99.0 8.2E-10 2.8E-14 81.8 6.1 43 25-67 8-51 (63)
37 2cqq_A RSGI RUH-037, DNAJ homo 99.0 1.2E-09 3.9E-14 83.6 6.8 48 25-73 7-58 (72)
38 2aje_A Telomere repeat-binding 98.9 8.1E-10 2.8E-14 90.2 6.0 50 24-73 11-65 (105)
39 1h89_C C-MYB, MYB proto-oncoge 98.9 1.1E-09 3.6E-14 92.2 5.6 49 24-72 56-105 (159)
40 2crg_A Metastasis associated p 98.9 2.8E-09 9.7E-14 80.6 6.6 44 24-67 6-50 (70)
41 1h89_C C-MYB, MYB proto-oncoge 98.9 7.5E-10 2.6E-14 93.1 3.8 48 25-72 109-156 (159)
42 1x58_A Hypothetical protein 49 98.8 5.5E-09 1.9E-13 78.7 5.8 47 24-70 6-55 (62)
43 4a69_C Nuclear receptor corepr 98.7 1.1E-08 3.7E-13 81.4 5.7 44 24-67 41-84 (94)
44 4eef_G F-HB80.4, designed hema 98.6 2.2E-09 7.5E-14 83.4 -0.9 43 26-68 20-66 (74)
45 1ign_A Protein (RAP1); RAP1,ye 98.6 1.5E-08 5.1E-13 93.4 3.7 49 25-73 7-61 (246)
46 1fex_A TRF2-interacting telome 98.1 3.9E-06 1.3E-10 61.7 4.8 46 26-71 2-57 (59)
47 3hm5_A DNA methyltransferase 1 97.7 8.3E-05 2.9E-09 59.7 7.4 52 26-77 30-86 (93)
48 1ug2_A 2610100B20RIK gene prod 97.6 0.00021 7.1E-09 57.8 7.8 53 25-77 32-87 (95)
49 1ofc_X ISWI protein; nuclear p 97.3 0.00026 9E-09 66.8 5.9 49 26-74 110-159 (304)
50 2xag_B REST corepressor 1; ami 97.0 0.00011 3.8E-09 73.2 0.0 43 26-68 189-231 (482)
51 2lr8_A CAsp8-associated protei 95.7 0.00027 9.1E-09 54.5 0.0 45 27-72 15-62 (70)
52 4iej_A DNA methyltransferase 1 96.4 0.0079 2.7E-07 48.4 7.0 53 26-78 30-87 (93)
53 2ebi_A DNA binding protein GT- 96.4 0.0056 1.9E-07 46.6 5.9 50 25-74 3-66 (86)
54 1ofc_X ISWI protein; nuclear p 96.2 0.0088 3E-07 56.5 7.4 54 25-78 211-280 (304)
55 4b4c_A Chromodomain-helicase-D 95.9 0.014 4.9E-07 50.2 6.4 54 24-77 5-63 (211)
56 2y9y_A Imitation switch protei 94.9 0.026 8.9E-07 54.8 5.4 48 26-73 123-172 (374)
57 4b4c_A Chromodomain-helicase-D 94.7 0.082 2.8E-06 45.5 7.3 50 26-75 134-198 (211)
58 1ign_A Protein (RAP1); RAP1,ye 94.4 0.069 2.3E-06 49.4 6.5 28 47-74 173-200 (246)
59 1ig6_A MRF-2, modulator recogn 94.2 0.027 9.3E-07 44.7 3.0 47 47-98 56-107 (107)
60 2xb0_X Chromo domain-containin 91.2 0.14 4.6E-06 47.6 3.6 27 27-53 169-196 (270)
61 2hzd_A Transcriptional enhance 91.0 0.27 9.3E-06 38.7 4.6 47 24-70 4-71 (82)
62 2y9y_A Imitation switch protei 85.9 1.5 5.2E-05 42.6 6.9 54 26-79 228-297 (374)
63 2li6_A SWI/SNF chromatin-remod 83.7 3.2 0.00011 33.3 6.9 30 47-76 72-101 (116)
64 2jxj_A Histone demethylase jar 83.6 1.1 3.9E-05 34.4 4.1 32 47-78 59-94 (96)
65 1kkx_A Transcription regulator 79.5 4.4 0.00015 33.2 6.4 32 47-78 71-102 (123)
66 2rq5_A Protein jumonji; develo 78.5 4.3 0.00015 33.3 6.1 30 47-76 65-99 (121)
67 2lm1_A Lysine-specific demethy 75.5 7.8 0.00027 30.2 6.6 34 47-80 67-104 (107)
68 2cxy_A BAF250B subunit, HBAF25 75.1 6.3 0.00022 31.9 6.2 31 47-77 74-108 (125)
69 2eqy_A RBP2 like, jumonji, at 74.8 17 0.0006 29.3 8.7 34 47-80 65-102 (122)
70 2jrz_A Histone demethylase jar 72.0 5.8 0.0002 31.9 5.2 43 36-78 44-98 (117)
71 2xb0_X Chromo domain-containin 70.0 9.8 0.00033 35.2 6.9 45 26-70 3-52 (270)
72 1c20_A DEAD ringer protein; DN 64.5 13 0.00045 30.1 5.9 34 47-80 75-113 (128)
73 2kk0_A AT-rich interactive dom 58.9 18 0.00063 30.0 5.9 34 47-80 87-125 (145)
74 2o8x_A Probable RNA polymerase 43.9 56 0.0019 21.9 5.6 48 27-76 14-61 (70)
75 1fse_A GERE; helix-turn-helix 37.2 95 0.0033 21.0 6.3 47 26-75 9-55 (74)
76 1ntc_A Protein (nitrogen regul 35.1 31 0.0011 25.8 3.3 29 31-59 50-79 (91)
77 1umq_A Photosynthetic apparatu 31.9 39 0.0013 25.7 3.4 31 29-59 38-69 (81)
78 3ulq_B Transcriptional regulat 30.4 1.2E+02 0.004 22.7 5.9 47 25-74 26-72 (90)
79 3mzy_A RNA polymerase sigma-H 29.6 1.4E+02 0.0048 22.5 6.3 32 44-76 123-154 (164)
80 3c57_A Two component transcrip 29.1 1.7E+02 0.006 21.6 6.7 48 26-76 25-72 (95)
81 1x3u_A Transcriptional regulat 28.5 1.1E+02 0.0038 21.1 5.1 45 28-75 16-60 (79)
82 3e7l_A Transcriptional regulat 28.2 54 0.0018 22.8 3.4 29 31-59 18-47 (63)
83 1p4w_A RCSB; solution structur 26.6 1.7E+02 0.006 22.2 6.4 47 26-75 32-78 (99)
84 3hug_A RNA polymerase sigma fa 26.3 1.8E+02 0.0062 21.0 6.2 31 45-76 53-83 (92)
85 2e1c_A Putative HTH-type trans 24.5 1.3E+02 0.0043 24.8 5.6 37 31-68 26-63 (171)
86 3i4p_A Transcriptional regulat 24.5 71 0.0024 25.8 4.0 36 32-68 3-39 (162)
87 1je8_A Nitrate/nitrite respons 24.3 1.5E+02 0.0053 21.2 5.4 49 24-75 17-65 (82)
88 2dbb_A Putative HTH-type trans 22.5 1.9E+02 0.0065 22.5 6.1 41 32-77 9-50 (151)
89 1eto_A FIS, factor for inversi 21.2 88 0.003 24.2 3.7 29 31-59 57-86 (98)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=128.11 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=56.9
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 10 NDSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 10 ~~~~~K~RKPytitk~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
....+|.++++.....+..||+|||++||+||++||.+|..||++||+||+.|||.||++|+.
T Consensus 2 ssg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 2 SSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CCSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCC
T ss_pred CCcccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 444568888988888999999999999999999999779999999999999999999998743
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=119.40 Aligned_cols=54 Identities=33% Similarity=0.663 Sum_probs=49.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC------cchHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 021851 24 KQREKWTEEEHQRFLDALKMYG------RGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yG------rgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
..++.||.|||++|+++|++|| .+|..||++|++||..|||.||++||.++.+.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999 56999999999999999999999999987544
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=6.3e-16 Score=116.27 Aligned_cols=54 Identities=33% Similarity=0.669 Sum_probs=50.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
..++.||+|||++|++++++||.+|..||.+|++||..|||+||++||.++.+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999999999999987554
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=4.1e-15 Score=108.17 Aligned_cols=48 Identities=29% Similarity=0.551 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-cchHHHHHHhC-CCCHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYG-RGWRQIEEHVG-TKTAVQIRSHAQKFFS 72 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yG-rgWk~IAe~Vg-TRT~~QVRSHaQKYF~ 72 (306)
.++.||+|||++|+++|++|| .+|..||++|+ +||+.|||.||++||.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 357899999999999999999 45999999999 9999999999999985
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=7.6e-15 Score=107.06 Aligned_cols=50 Identities=28% Similarity=0.525 Sum_probs=45.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHHHhCCCCHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGR-GWRQIEEHVGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGr-gWk~IAe~VgTRT~~QVRSHaQKYF~k 73 (306)
..+..||+|||++|++++++||. +|..||++|++||+.|||.||++||..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 35678999999999999999995 699999999999999999999999763
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.49 E-value=3.8e-14 Score=99.83 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-chHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGR-GWRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGr-gWk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
.++.||.||+++|++++++||. +|..||++|++||+.|||.||++|+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999 59999999999999999999999875
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.45 E-value=5.4e-14 Score=128.61 Aligned_cols=64 Identities=27% Similarity=0.536 Sum_probs=59.3
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 021851 11 DSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 11 ~~~~K~RKPytitk~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl 74 (306)
+.+.+.|+|+.+.+....||+||+.+|++||.+||++|..||++||+||..||++||++|+.++
T Consensus 118 ~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred hhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 4556888899999999999999999999999999999999999999999999999999987763
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.45 E-value=7.3e-14 Score=98.56 Aligned_cols=48 Identities=27% Similarity=0.578 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
.++.||.||+++|++++++||.+ |..||.+|++||..|||.||++|+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 36889999999999999999985 9999999999999999999998864
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=100.03 Aligned_cols=56 Identities=25% Similarity=0.516 Sum_probs=50.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhCC
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNG 80 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r~~~g 80 (306)
..++.||.||+++|+++++.||..|..||+ +.+||+.|||.||++|+.+..+...|
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 356889999999999999999999999999 55699999999999999998776544
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=1.4e-13 Score=99.68 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=45.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHHHhCCCCHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGR-GWRQIEEHVGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGr-gWk~IAe~VgTRT~~QVRSHaQKYF~k 73 (306)
..++.||.||+++|++++++||. +|..||++|++||..|||.||++|+.+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence 45689999999999999999995 699999999999999999999988653
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.38 E-value=7.5e-13 Score=94.02 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHHhC--CCCHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGR-GWRQIEEHVG--TKTAVQIRSHAQKFFS 72 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGr-gWk~IAe~Vg--TRT~~QVRSHaQKYF~ 72 (306)
++.||+|||++|+++++.||. .|..||.+++ +||+.||+.||.+|..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999996 5999999999 9999999999998864
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.37 E-value=9.3e-13 Score=98.02 Aligned_cols=50 Identities=22% Similarity=0.502 Sum_probs=46.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGR-GWRQIEEHVG--TKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGr-gWk~IAe~Vg--TRT~~QVRSHaQKYF~k 73 (306)
+.++.||.||+++|++++++||. .|..||.+++ +||..|||.||.+|+..
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 56789999999999999999996 5999999999 99999999999999765
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=1.3e-12 Score=100.23 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----cchHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYG----RGWRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yG----rgWk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
..++.||.||+.+|++||.+|| ..|.+||++||+||..||+.||+.+..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999 459999999999999999999997643
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.7e-13 Score=98.88 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=45.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHHHhCCCCHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGR-GWRQIEEHVGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGr-gWk~IAe~VgTRT~~QVRSHaQKYF~k 73 (306)
..++.||.||+++|++++++||. +|..||.+|++||+.|||.||++|+..
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDP 57 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCC
Confidence 35689999999999999999994 699999999999999999999988653
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.33 E-value=2.3e-12 Score=95.98 Aligned_cols=48 Identities=29% Similarity=0.585 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhC--CCCHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRG-WRQIEEHVG--TKTAVQIRSHAQKFFS 72 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~Vg--TRT~~QVRSHaQKYF~ 72 (306)
.+..||+||+++|+++|++||.+ |..||++++ +||..|||.+|.++..
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999975 999999876 8999999999987743
No 16
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-13 Score=108.29 Aligned_cols=53 Identities=28% Similarity=0.364 Sum_probs=49.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r 76 (306)
..++.||.||+++|++++.+||.+|..||.+|++||..||++||++|+.++..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 46789999999999999999999999999999999999999999999887643
No 17
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.30 E-value=1.8e-12 Score=128.58 Aligned_cols=62 Identities=27% Similarity=0.550 Sum_probs=56.7
Q ss_pred CCCCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 021851 13 LPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 13 ~~K~RKPytitk~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl 74 (306)
+...|.|+.+.+...+||+||+.+|++||.+||++|..||++|||||..|||+||++|+.++
T Consensus 367 ~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 367 IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp TGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred cccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 44667788888899999999999999999999999999999999999999999999987754
No 18
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=7.1e-12 Score=92.00 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHA 67 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHa 67 (306)
+....||+||+++|++|+.+||++|..||.+|++||..||+.||
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999875
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.27 E-value=8e-12 Score=99.82 Aligned_cols=56 Identities=20% Similarity=0.496 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc----chHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhCC
Q 021851 25 QREKWTEEEHQRFLDALKMYGR----GWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNG 80 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGr----gWk~IAe~VgTRT~~QVRSHaQKYF~kl~r~~~g 80 (306)
..+.||.||+.+|++||..||. .|.+||++||+||..||+.||++++.++.....|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 3578999999999999999974 4999999999999999999999999888766555
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.22 E-value=2.1e-11 Score=97.11 Aligned_cols=53 Identities=17% Similarity=0.384 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 021851 25 QREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
.++.||.||+.+|++++..||..|..||++|++||..||+.||..+..++.+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 56899999999999999999999999999999999999999999888876543
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.19 E-value=2.4e-11 Score=99.37 Aligned_cols=49 Identities=22% Similarity=0.444 Sum_probs=46.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
..++.||.||+++|++++++||.+|..||++|++||+.|||.||++|+.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 4578999999999999999999999999999999999999999998864
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.17 E-value=1.8e-11 Score=100.60 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=47.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~ 75 (306)
..++.||.||+++|++++..||..|..||.+|++||..||++||+.++.+..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999999999999998887643
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.16 E-value=3.2e-11 Score=98.68 Aligned_cols=51 Identities=24% Similarity=0.493 Sum_probs=46.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl 74 (306)
..++.||.||+++|++++++||..|..||++|++||..||+.||..+..++
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999999998877664
No 24
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=4.2e-11 Score=91.90 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=43.1
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHH
Q 021851 21 TITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQ 68 (306)
Q Consensus 21 titk~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQ 68 (306)
.....++.||+||+++|++++++||.+|..||+++ +||..|||.||.
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 34457899999999999999999999999999999 999999999986
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.16 E-value=3.4e-11 Score=95.87 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
++.||.||+++|+++|+.||.+ |..||.+|++||+.||+.||.+|+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence 3689999999999999999985 9999999999999999999998854
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.16 E-value=2.6e-11 Score=95.55 Aligned_cols=49 Identities=27% Similarity=0.504 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~k 73 (306)
.++.||.||+.+|++++..||..|..||++|++||..||++||..+..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999877544
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.16 E-value=2.6e-11 Score=95.54 Aligned_cols=47 Identities=28% Similarity=0.571 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFF 71 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF 71 (306)
.++.||.||+++|+++++.||.+ |..||++|++||+.||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 45889999999999999999985 999999999999999999999875
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.09 E-value=5.5e-11 Score=97.69 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
++.||.||+++|+++|+.||.+ |..||.+|++||+.||+.||++|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccC
Confidence 5789999999999999999965 9999999999999999999999864
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.08 E-value=1.1e-10 Score=95.23 Aligned_cols=49 Identities=27% Similarity=0.591 Sum_probs=45.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
..++.||.||+++|+++++.||.+ |..||++|++||..||+.||++|+.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 457899999999999999999986 9999999999999999999998754
No 30
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.04 E-value=3.4e-10 Score=88.70 Aligned_cols=48 Identities=17% Similarity=0.459 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHHHH----hCCCCHHHHHHHHHHHHHHH
Q 021851 27 EKWTEEEHQRFLDALKMYGRG-WRQIEEH----VGTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~----VgTRT~~QVRSHaQKYF~kl 74 (306)
..||.||++.|++++++||.+ |+.|++. +++||..||+.+|.+++.+-
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 369999999999999999996 9999985 88999999999999987653
No 31
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.04 E-value=5.1e-10 Score=84.65 Aligned_cols=55 Identities=31% Similarity=0.423 Sum_probs=49.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc---hHHHHHHhC--CCCHHHHHHHHHHHHHHHHHh
Q 021851 23 TKQREKWTEEEHQRFLDALKMYGRG---WRQIEEHVG--TKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 23 tk~r~~WT~EEh~lFLEaLe~yGrg---Wk~IAe~Vg--TRT~~QVRSHaQKYF~kl~r~ 77 (306)
.+.+-.||+|.|++|++||+++|.+ |+.|-++++ +.|..||+||.|||+.++.|.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 3567899999999999999999965 899999876 679999999999999998764
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.04 E-value=1e-10 Score=95.34 Aligned_cols=48 Identities=25% Similarity=0.489 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
.++.||+||+.+|++++++||..|..||++|++||..||++||..+..
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999999999999886543
No 33
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.98 E-value=7.9e-10 Score=85.35 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc----hHHHHHHhCCCCHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRG----WRQIEEHVGTKTAVQIRSHAQKF 70 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrg----Wk~IAe~VgTRT~~QVRSHaQKY 70 (306)
....||.||+.+|++||..|+++ |.+||++||+||+.||+.||+..
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34689999999999999999973 99999999999999999998754
No 34
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.98 E-value=9.6e-10 Score=91.83 Aligned_cols=53 Identities=17% Similarity=0.446 Sum_probs=47.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 021851 21 TITKQREKWTEEEHQRFLDALKMYGRG-WRQIEEHV----GTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 21 titk~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~V----gTRT~~QVRSHaQKYF~k 73 (306)
...+.++.||.||++.|++++++||.+ |..|+++. .+||..||+.+|.+++..
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999996 99999875 799999999999998775
No 35
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.97 E-value=1.3e-09 Score=91.16 Aligned_cols=53 Identities=19% Similarity=0.412 Sum_probs=47.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 021851 22 ITKQREKWTEEEHQRFLDALKMYGRG-WRQIEEHV----GTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 22 itk~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~V----gTRT~~QVRSHaQKYF~kl 74 (306)
..+.+..||.||++.|++|+++||.+ |..|+++. .+||..||+.+|.+++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34678999999999999999999996 99999864 7999999999999987653
No 36
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=8.2e-10 Score=81.81 Aligned_cols=43 Identities=26% Similarity=0.533 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHH-HhCCCCHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRGWRQIEE-HVGTKTAVQIRSHA 67 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrgWk~IAe-~VgTRT~~QVRSHa 67 (306)
....||+||+.+|++||.+||++|..|+. +|++||..||..+|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 45789999999999999999999999998 59999999999764
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.96 E-value=1.2e-09 Score=83.55 Aligned_cols=48 Identities=15% Similarity=0.450 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc----chHHHHHHhCCCCHHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGR----GWRQIEEHVGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGr----gWk~IAe~VgTRT~~QVRSHaQKYF~k 73 (306)
....||.||+.+|.+||.+|+. .|.+||+++ +||..||+.||+++...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 4578999999999999999984 399999999 69999999998877443
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.95 E-value=8.1e-10 Score=90.18 Aligned_cols=50 Identities=18% Similarity=0.446 Sum_probs=45.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRG-WRQIEEHV----GTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~V----gTRT~~QVRSHaQKYF~k 73 (306)
+.+..||.||++.|++|+++||.+ |..|++.. .+||..||+.+|.+++..
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 567899999999999999999996 99999854 799999999999988764
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.91 E-value=1.1e-09 Score=92.15 Aligned_cols=49 Identities=27% Similarity=0.540 Sum_probs=45.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
..++.||.||+.+|+++++.||.+ |..||.++++||..|||.||++|+.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999975 9999999999999999999998753
No 40
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.89 E-value=2.8e-09 Score=80.60 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHH-HhCCCCHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEE-HVGTKTAVQIRSHA 67 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe-~VgTRT~~QVRSHa 67 (306)
+....||+||+.+|++||.+||++|..|+. +|++||..||..+|
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 466899999999999999999999999999 69999999999875
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.89 E-value=7.5e-10 Score=93.07 Aligned_cols=48 Identities=27% Similarity=0.495 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
.++.||.||+.+|++++++||..|..||++|++||..||++||..++.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTC
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999999999999886543
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.81 E-value=5.5e-09 Score=78.73 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=42.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHH---HHhCCCCHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIE---EHVGTKTAVQIRSHAQKF 70 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IA---e~VgTRT~~QVRSHaQKY 70 (306)
.++..||+||++.|++++++||..|+.|+ .++..||.+.++.+|...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 46788999999999999999999999999 478899999999987644
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.74 E-value=1.1e-08 Score=81.41 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHA 67 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHa 67 (306)
+....||+||+++|.+++.+||++|..||++|++||..||..||
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 44689999999999999999999999999999999999999874
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.64 E-value=2.2e-09 Score=83.44 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc----hHHHHHHhCCCCHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRG----WRQIEEHVGTKTAVQIRSHAQ 68 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg----Wk~IAe~VgTRT~~QVRSHaQ 68 (306)
...||.||+.+|..||..|+++ |.+||+.||+||+.||+.||+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999985 999999999999999999987
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.62 E-value=1.5e-08 Score=93.41 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc------hHHHHHHhCCCCHHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRG------WRQIEEHVGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrg------Wk~IAe~VgTRT~~QVRSHaQKYF~k 73 (306)
.+..||+||++++|+++++||.. |..||.++++||..|||+||..|+.+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 46799999999999999999885 99999999999999999999999766
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.06 E-value=3.9e-06 Score=61.67 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------Ccc-hHHHHH-HhCCCCHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMY--------GRG-WRQIEE-HVGTKTAVQIRSHAQKFF 71 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~y--------Grg-Wk~IAe-~VgTRT~~QVRSHaQKYF 71 (306)
|..||+|||..+++.|..| |.. |+.||+ .++.+|..++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 666 999999 899999999999998875
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.72 E-value=8.3e-05 Score=59.68 Aligned_cols=52 Identities=12% Similarity=0.321 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHh
Q 021851 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHV-----GTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrgWk~IAe~V-----gTRT~~QVRSHaQKYF~kl~r~ 77 (306)
...||.||...|++.+++||..|-.|++.. +.||..++++||-..-.++.+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999887 5799999999988887777665
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.58 E-value=0.00021 Score=57.84 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---chHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 021851 25 QREKWTEEEHQRFLDALKMYGR---GWRQIEEHVGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGr---gWk~IAe~VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
.--.||.|||+-+|.+.++-|. .|..||+.+++|++.||+.|+|....=+++.
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999998 4999999999999999999998765544444
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.30 E-value=0.00026 Score=66.84 Aligned_cols=49 Identities=24% Similarity=0.474 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~kl 74 (306)
-+.||..+-..|+.|+++||++ |..||..|++||..+|+.|++-|+.+.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 3579999999999999999998 999999999999999999998877665
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.98 E-value=0.00011 Score=73.19 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQ 68 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQ 68 (306)
...||.+|..+|.+||.+||++|..|+++|++||..+|..||-
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY 231 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYY 231 (482)
T ss_dssp -------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhc
Confidence 4589999999999999999999999999999999999998743
No 51
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.71 E-value=0.00027 Score=54.48 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCc---chHHHHHHhCCCCHHHHHHHHHHHHH
Q 021851 27 EKWTEEEHQRFLDALKMYGR---GWRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGr---gWk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
-.||.|||+-+|..+++-|. .|..||..+ +||+.||..|+|....
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 57999999999999999999 499999999 8999999999886543
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.43 E-value=0.0079 Score=48.39 Aligned_cols=53 Identities=11% Similarity=0.314 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHhh
Q 021851 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHV-----GTKTAVQIRSHAQKFFSKVVRES 78 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrgWk~IAe~V-----gTRT~~QVRSHaQKYF~kl~r~~ 78 (306)
...||.||...|++.++.|+..|--|++.. +.||..+++.||-..-.+|.+..
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999754 37999999999988888887663
No 53
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.43 E-value=0.0056 Score=46.62 Aligned_cols=50 Identities=12% Similarity=0.315 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-------c---chHHHHHHhC----CCCHHHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYG-------R---GWRQIEEHVG----TKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yG-------r---gWk~IAe~Vg----TRT~~QVRSHaQKYF~kl 74 (306)
....||.+|-.+||++..... . -|..||+.+. .||+.||+..|.+....-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999987531 1 2999997654 799999999887654443
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.25 E-value=0.0088 Score=56.52 Aligned_cols=54 Identities=17% Similarity=0.357 Sum_probs=47.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---c-hHHHH------------HHhCCCCHHHHHHHHHHHHHHHHHhh
Q 021851 25 QREKWTEEEHQRFLDALKMYGR---G-WRQIE------------EHVGTKTAVQIRSHAQKFFSKVVRES 78 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGr---g-Wk~IA------------e~VgTRT~~QVRSHaQKYF~kl~r~~ 78 (306)
+...||+|||..||-+|-+||. + |..|- -|+.+||+.+|..|++-...-+.++.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE~ 280 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIEREN 280 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999999 7 99996 37889999999999998877777763
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.87 E-value=0.014 Score=50.23 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=43.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC--cc-hHHHHHH--hCCCCHHHHHHHHHHHHHHHHHh
Q 021851 24 KQREKWTEEEHQRFLDALKMYG--RG-WRQIEEH--VGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yG--rg-Wk~IAe~--VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
.....||+.|-..|+.|+.+|| .+ |..|++. +..||...|+.+++.|...-.+.
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~ 63 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKA 63 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999 45 9999875 56899999999888776664443
No 56
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.95 E-value=0.026 Score=54.81 Aligned_cols=48 Identities=27% Similarity=0.533 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRG-WRQIEEHVG-TKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~Vg-TRT~~QVRSHaQKYF~k 73 (306)
-+.||..+=..|+.|+++||++ ...||..|+ +||..+|+.++.-|+.+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999 999999998 99999999888777655
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.66 E-value=0.082 Score=45.46 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHH--H------------hCCCCHHHHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRG-WRQIEE--H------------VGTKTAVQIRSHAQKFFSKVV 75 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe--~------------VgTRT~~QVRSHaQKYF~kl~ 75 (306)
...||.+||..||.|+.+||-+ |..|-. . ..++++.++..|+...+.-+.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 3569999999999999999988 999963 1 124667788888874444343
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.42 E-value=0.069 Score=49.43 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=25.4
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 021851 47 GWRQIEEHVGTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 47 gWk~IAe~VgTRT~~QVRSHaQKYF~kl 74 (306)
-|+.||++++.||...+|.+|.||..+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 3999999999999999999999987664
No 59
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=94.18 E-value=0.027 Score=44.67 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=32.4
Q ss_pred chHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHhhCCCCCCCcccccCCCCCCCC
Q 021851 47 GWRQIEEHVGT-----KTAVQIRSHAQKFFSKVVRESNGSSESSIMPIEIPPPRPKR 98 (306)
Q Consensus 47 gWk~IAe~VgT-----RT~~QVRSHaQKYF~kl~r~~~g~~~~~~~~i~iPpprpKR 98 (306)
.|+.|++.+|- -...++|.||.+|+........|. .+..||+..|++
T Consensus 56 ~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~-----~~~~~p~~~~~~ 107 (107)
T 1ig6_A 56 QWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGE-----EDKPLPPIKPRK 107 (107)
T ss_dssp THHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHH-----TSSSSCTTCSCC
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCCCCCCCC
Confidence 49999998883 235789999999966655433331 245788877664
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.19 E-value=0.14 Score=47.64 Aligned_cols=27 Identities=41% Similarity=0.909 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHHH
Q 021851 27 EKWTEEEHQRFLDALKMYGRG-WRQIEE 53 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGrg-Wk~IAe 53 (306)
-.|+.+|+..||.||-+||.| |..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 469999999999999999999 999963
No 61
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=90.98 E-value=0.27 Score=38.72 Aligned_cols=47 Identities=30% Similarity=0.453 Sum_probs=35.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC---cc-----------h--HHHHHHhC-----CCCHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYG---RG-----------W--RQIEEHVG-----TKTAVQIRSHAQKF 70 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yG---rg-----------W--k~IAe~Vg-----TRT~~QVRSHaQKY 70 (306)
+..+.|.++=+..|++||+.|- +. + .-|++||- .||..||-+|-|-.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHH
Confidence 4568899999999999999993 22 1 12565553 69999999998843
No 62
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.87 E-value=1.5 Score=42.62 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---c-hHHHHH------------HhCCCCHHHHHHHHHHHHHHHHHhhC
Q 021851 26 REKWTEEEHQRFLDALKMYGR---G-WRQIEE------------HVGTKTAVQIRSHAQKFFSKVVRESN 79 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGr---g-Wk~IAe------------~VgTRT~~QVRSHaQKYF~kl~r~~~ 79 (306)
...||++||..||-+|-+||- + |..|-. |+.+||+.+|.-|..-...-+.++..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFN 297 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999 7 999932 37799999999999977777777643
No 63
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=83.70 E-value=3.2 Score=33.31 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=25.6
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 021851 47 GWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 47 gWk~IAe~VgTRT~~QVRSHaQKYF~kl~r 76 (306)
.|+.||..+|--.+.++|.||.+|+.....
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 499999999876689999999999776554
No 64
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=83.58 E-value=1.1 Score=34.45 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=25.0
Q ss_pred chHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhh
Q 021851 47 GWRQIEEHVGTK----TAVQIRSHAQKFFSKVVRES 78 (306)
Q Consensus 47 gWk~IAe~VgTR----T~~QVRSHaQKYF~kl~r~~ 78 (306)
.|+.|++.+|-- .+.++|.||.+|+....+..
T Consensus 59 ~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 59 KWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQ 94 (96)
T ss_dssp THHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHH
T ss_pred cHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHh
Confidence 499999988742 26799999999988766543
No 65
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=79.52 E-value=4.4 Score=33.16 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=27.8
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Q 021851 47 GWRQIEEHVGTKTAVQIRSHAQKFFSKVVRES 78 (306)
Q Consensus 47 gWk~IAe~VgTRT~~QVRSHaQKYF~kl~r~~ 78 (306)
.|+.|++.+|--.+.++|.||.+|+.....-.
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~~ 102 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIYFRILLPYERHM 102 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 49999999987679999999999998887643
No 66
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=78.53 E-value=4.3 Score=33.32 Aligned_cols=30 Identities=3% Similarity=0.241 Sum_probs=23.6
Q ss_pred chHHHHHHhCC-----CCHHHHHHHHHHHHHHHHH
Q 021851 47 GWRQIEEHVGT-----KTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 47 gWk~IAe~VgT-----RT~~QVRSHaQKYF~kl~r 76 (306)
.|+.||..+|- -...++|.||.+|+..-..
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 49999998873 2357899999999887654
No 67
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=75.50 E-value=7.8 Score=30.22 Aligned_cols=34 Identities=9% Similarity=0.377 Sum_probs=26.9
Q ss_pred chHHHHHHhCCCC----HHHHHHHHHHHHHHHHHhhCC
Q 021851 47 GWRQIEEHVGTKT----AVQIRSHAQKFFSKVVRESNG 80 (306)
Q Consensus 47 gWk~IAe~VgTRT----~~QVRSHaQKYF~kl~r~~~g 80 (306)
.|+.|+..+|--. ..++|.||.+|+........|
T Consensus 67 ~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 67 KWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp THHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 4999999988533 679999999998887765433
No 68
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=75.09 E-value=6.3 Score=31.91 Aligned_cols=31 Identities=13% Similarity=0.366 Sum_probs=25.2
Q ss_pred chHHHHHHhCCCC----HHHHHHHHHHHHHHHHHh
Q 021851 47 GWRQIEEHVGTKT----AVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 47 gWk~IAe~VgTRT----~~QVRSHaQKYF~kl~r~ 77 (306)
.|+.|++.+|--+ ..++|.||.+|+....+.
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4999999887543 579999999998877665
No 69
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.85 E-value=17 Score=29.28 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=26.8
Q ss_pred chHHHHHHhCCCC----HHHHHHHHHHHHHHHHHhhCC
Q 021851 47 GWRQIEEHVGTKT----AVQIRSHAQKFFSKVVRESNG 80 (306)
Q Consensus 47 gWk~IAe~VgTRT----~~QVRSHaQKYF~kl~r~~~g 80 (306)
.|+.|+..+|-.. +.++|.||.+|+........+
T Consensus 65 ~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~ 102 (122)
T 2eqy_A 65 KWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSG 102 (122)
T ss_dssp THHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 4999999887532 579999999998887766544
No 70
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=71.97 E-value=5.8 Score=31.86 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=30.9
Q ss_pred HHHHHHHHhC--------cchHHHHHHhCCCC----HHHHHHHHHHHHHHHHHhh
Q 021851 36 RFLDALKMYG--------RGWRQIEEHVGTKT----AVQIRSHAQKFFSKVVRES 78 (306)
Q Consensus 36 lFLEaLe~yG--------rgWk~IAe~VgTRT----~~QVRSHaQKYF~kl~r~~ 78 (306)
+|..+|...| +.|+.|+..+|--. ..++|.||.+|+.......
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~~ 98 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQ 98 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 34999999987543 6799999999977766543
No 71
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=70.03 E-value=9.8 Score=35.22 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---chHHHHH--HhCCCCHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGR---GWRQIEE--HVGTKTAVQIRSHAQKF 70 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGr---gWk~IAe--~VgTRT~~QVRSHaQKY 70 (306)
++.||+.|=++|+.++.+||. .|..|++ -+..|+...++.-++-.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 467999999999999999994 4999974 46689988877665543
No 72
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=64.46 E-value=13 Score=30.06 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=26.6
Q ss_pred chHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHhhCC
Q 021851 47 GWRQIEEHVGTK-----TAVQIRSHAQKFFSKVVRESNG 80 (306)
Q Consensus 47 gWk~IAe~VgTR-----T~~QVRSHaQKYF~kl~r~~~g 80 (306)
.|+.|++.+|-- ...++|.||.+|+........+
T Consensus 75 ~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~ 113 (128)
T 1c20_A 75 LWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKN 113 (128)
T ss_dssp THHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHC
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 499999988731 2689999999998887766543
No 73
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=58.91 E-value=18 Score=30.05 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.1
Q ss_pred chHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHhhCC
Q 021851 47 GWRQIEEHVGTK-----TAVQIRSHAQKFFSKVVRESNG 80 (306)
Q Consensus 47 gWk~IAe~VgTR-----T~~QVRSHaQKYF~kl~r~~~g 80 (306)
.|+.|+..+|-- ...++|.+|.+|+........|
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g 125 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRG 125 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTC
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 499999988742 2679999999998887776555
No 74
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=43.91 E-value=56 Score=21.93 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 021851 27 EKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r 76 (306)
..+++.|-..|... -..|..++.||+.+|- +...|+.+..+-..++.+
T Consensus 14 ~~L~~~~r~il~l~-~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLLT-QLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHHH-HTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHH-HHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 45776666665532 2557779999999874 677777776666666654
No 75
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.19 E-value=95 Score=20.98 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~ 75 (306)
...+|+.|-+.|.. + ..|...+.||+.+|- +..-|+.|..+-+.++.
T Consensus 9 ~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHC
Confidence 45688888877766 4 567779999999875 77888888777766663
No 76
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=35.10 E-value=31 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHhC-CCC
Q 021851 31 EEEHQRFLDALKMYGRGWRQIEEHVG-TKT 59 (306)
Q Consensus 31 ~EEh~lFLEaLe~yGrgWk~IAe~Vg-TRT 59 (306)
.-|...+.++|+.+|.+..+.|+.+| +|+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCcCHH
Confidence 44778889999999988999999998 444
No 77
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=31.92 E-value=39 Score=25.70 Aligned_cols=31 Identities=6% Similarity=0.099 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHhCcchHHHHHHhC-CCC
Q 021851 29 WTEEEHQRFLDALKMYGRGWRQIEEHVG-TKT 59 (306)
Q Consensus 29 WT~EEh~lFLEaLe~yGrgWk~IAe~Vg-TRT 59 (306)
..+-|.+.+.++|+.+|.+..+.|+.+| +|+
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGISR~ 69 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNMHRR 69 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHH
Confidence 3455778888999999999999999998 454
No 78
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=30.43 E-value=1.2e+02 Score=22.66 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 021851 25 QREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl 74 (306)
....-|..|-+.|.-.. .|..-+.||+.++ -+..-|+.|..+.+.++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~-iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALH-LSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHT-CCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 34567888887776544 7888999999886 47888999988888776
No 79
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.62 E-value=1.4e+02 Score=22.51 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=21.4
Q ss_pred hCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 021851 44 YGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 44 yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r 76 (306)
.|...+.||+.+| -+...|+.+..+-..++.+
T Consensus 123 ~g~s~~EIA~~lg-is~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 123 RGYSYREIATILS-KNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TTCCHHHHHHHHT-CCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 3666999999987 4666666665555555543
No 80
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.09 E-value=1.7e+02 Score=21.55 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r 76 (306)
-...|+.|-+.|.- + ..|..-+.||+.+|- +..-|+.|-.+-+.++..
T Consensus 25 l~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 25 LSGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp --CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcC
Confidence 45688888877776 4 778889999999875 888899988888887754
No 81
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.48 E-value=1.1e+02 Score=21.08 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 021851 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75 (306)
Q Consensus 28 ~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~ 75 (306)
.+|+.|-+.|.- + ..|...+.||+.+|- +...|+.|..+-+.++.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 466767666654 4 567779999999864 77788887776666653
No 82
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.24 E-value=54 Score=22.84 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHhCC-CC
Q 021851 31 EEEHQRFLDALKMYGRGWRQIEEHVGT-KT 59 (306)
Q Consensus 31 ~EEh~lFLEaLe~yGrgWk~IAe~VgT-RT 59 (306)
.-|...+.++|+.+|.++...|+.+|- |+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGisr~ 47 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCcCHH
Confidence 357888999999999899999999984 44
No 83
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.64 E-value=1.7e+02 Score=22.24 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 021851 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~ 75 (306)
...-|+.|-+.|.- + ..|...+.||+.++- +..-|+.|-.+-+.++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 35578888877755 3 468889999999875 78889988887777763
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=26.31 E-value=1.8e+02 Score=21.01 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=21.1
Q ss_pred CcchHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 021851 45 GRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 45 GrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r 76 (306)
|...+.||+.+| -+...|+.|..+-+.++.+
T Consensus 53 g~s~~eIA~~lg-is~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 53 GWSTAQIATDLG-IAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp CCCHHHHHHHHT-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 666999999887 3566666666655555544
No 85
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.55 E-value=1.3e+02 Score=24.84 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHH
Q 021851 31 EEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQ 68 (306)
Q Consensus 31 ~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQ 68 (306)
++-+.++|.+|+..|+- |..||+.+|- +...|+.|.+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~rl~ 63 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGL-AESTIHERIR 63 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHH
Confidence 45677899999999887 9999999984 7777776633
No 86
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.55 E-value=71 Score=25.83 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHH
Q 021851 32 EEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQ 68 (306)
Q Consensus 32 EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQ 68 (306)
+-+.++|++|+..|+- |+.||+.+|- +...|+.|.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl~ 39 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRIQ 39 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHHH
Confidence 4578899999998887 9999999974 7778887644
No 87
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.27 E-value=1.5e+02 Score=21.25 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=36.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 021851 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~ 75 (306)
..-...|+.|-+.|.- + ..|...+.||+.+| -+..-|+.|-.+-+.++.
T Consensus 17 ~~~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~-is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 17 RDVNQLTPRERDILKL-I-AQGLPNKMIARRLD-ITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CCGGGSCHHHHHHHHH-H-TTTCCHHHHHHHHT-SCHHHHHHHHHHHHHHTT
T ss_pred HHHccCCHHHHHHHHH-H-HcCCCHHHHHHHHC-cCHHHHHHHHHHHHHHHc
Confidence 3446788888877766 4 56777999999986 477888888777766653
No 88
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.54 E-value=1.9e+02 Score=22.55 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 021851 32 EEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 32 EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
+-+.++|..|+..|+- |+.||+.+|- +...|+.+ +.++...
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~----l~~L~~~ 50 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARR----IDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHC
Confidence 4466888999988887 9999999985 66667665 4455444
No 89
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=21.22 E-value=88 Score=24.24 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHhC-CCC
Q 021851 31 EEEHQRFLDALKMYGRGWRQIEEHVG-TKT 59 (306)
Q Consensus 31 ~EEh~lFLEaLe~yGrgWk~IAe~Vg-TRT 59 (306)
.-|...+.++|+.+|.+..+.|+.+| +|+
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGIsR~ 86 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGINRG 86 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHH
Confidence 44777888999999988888999888 454
Done!