BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021852
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 35 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 94
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 95 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL 154
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 155 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 214
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 215 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 274
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 275 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 334
Query: 301 QYYKMR 306
Y+MR
Sbjct: 335 TDYRMR 340
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 38 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 97
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 98 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL 157
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 158 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 217
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 218 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 277
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 278 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 337
Query: 301 QYYKMR 306
Y+MR
Sbjct: 338 TDYRMR 343
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
+LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 44 LLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 103
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 104 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL 163
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 164 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 223
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 224 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 283
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 284 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 343
Query: 301 QYYKMR 306
Y+MR
Sbjct: 344 TDYRMR 349
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 48 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 107
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +++MLNTVL+ARDKWL
Sbjct: 108 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWL 167
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 168 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 227
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 228 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 287
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 288 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 347
Query: 301 QYYKMR 306
Y+MR
Sbjct: 348 TDYRMR 353
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 207/293 (70%), Gaps = 2/293 (0%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
ML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK GA HV V+ S + M
Sbjct: 16 MLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEM 75
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+E+M++TVLYARD +L
Sbjct: 76 AKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYL 135
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S + EP+VDTV++N +
Sbjct: 136 VEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNV 195
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF--TKCHKLMGFST 238
T L D++ + D +F + FKL A+R D I+ +V +FD+ F K + + FST
Sbjct: 196 NTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFST 255
Query: 239 GPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 291
GP + THWKQT+ Y D L G+ I G L +PN+KN RD++I + Y +
Sbjct: 256 GPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFE 308
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 194/299 (64%), Gaps = 8/299 (2%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA V AV+ S++
Sbjct: 23 MLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQ 82
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A I+ N + I ++KGKIEE+ LPV KVD+IISEWMGYFLLFE+ML++VLYA+ K+L
Sbjct: 83 AMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYL 142
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
G V PD ++ L A+ D D+I FW++VYGF+MSC+KK + E +V+ VD +
Sbjct: 143 AKGGSVYPDICTISLVAVSDVSKHADRIAFWDDVYGFNMSCMKKAVIPEAVVEVVDHKTL 202
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTK-CHKLMGFSTG 239
+++ +K +D D F++ F L + A+ YFD+ F K CH + FSTG
Sbjct: 203 ISDPCDIKHIDCHTTSISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTG 262
Query: 240 PKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIML-------KYSLQ 291
P+S THWKQT+ LE + GEA+ G +TV NKK+PR + + L YSLQ
Sbjct: 263 PQSTKTHWKQTIFLLEKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLNSSTQTYSLQ 321
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 190/287 (66%), Gaps = 1/287 (0%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA V V+ S++
Sbjct: 42 MLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ 101
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFLLFE+ML++VLYA++K+L
Sbjct: 102 AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYL 161
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
G V PD ++ L A+ D D+I FW++VYGF MSC+KK + E +V+ +D +
Sbjct: 162 AKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTL 221
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTK-CHKLMGFSTG 239
++ +K +D D F++ F L R A+ YFD+ F K CH + FSTG
Sbjct: 222 ISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTG 281
Query: 240 PKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIML 286
P+S THWKQTV LE ++ GEA+ G +TV NKK+PR + + L
Sbjct: 282 PQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTL 328
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 179/304 (58%), Gaps = 16/304 (5%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
M+ D VRT +Y+ I +N + K VLDVGAGTGILS+FCA+AGA VYAVE S +
Sbjct: 61 MIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQ 120
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+++V NG + + VL G +E +ELP +VD I+SEWMGY LL E+ML++VL+AR KWL
Sbjct: 121 AREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWL 179
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNV---YGFDMSCIKKQAMM------EPL 171
+ G++LP A L++ I D + + ++ FW+ V YG DMSC++ A E +
Sbjct: 180 KEGGLLLPASAELFIVPISD-QMLEWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIV 238
Query: 172 VDTVDQNQIVTNCQLLKTMDISKMG---PGDASFTAPFKLVAQRNDYIHALVAYFDVTFT 228
V + ++ Q +++S+ G +A F+ + +H +F VTF
Sbjct: 239 VQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFP 298
Query: 229 --KCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIML 286
+ K + ST P ATHWKQ +LYL + + + + +SG +T+ P++ NPR + ++L
Sbjct: 299 GGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLL 358
Query: 287 KYSL 290
+Y +
Sbjct: 359 RYKV 362
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 13/306 (4%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
M++D VRT +YQ I QN FKDK+VLDVG G+GILS F A+AGA +YAVE S MA
Sbjct: 24 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH 83
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MGY L E ML + L+A+ K+L
Sbjct: 84 AEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYL 141
Query: 121 VDDGIVLPDKASLYLTAIEDAE-YKDD--KIEFW--NNVYGFDMSCIKKQAMME----PL 171
G + P ++L D + Y + K FW + +G D+S ++ A+ E P+
Sbjct: 142 KPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPV 201
Query: 172 VDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230
VDT D +I+ + T++ + GD PFK + +H L +FDV F
Sbjct: 202 VDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 260
Query: 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290
+ ST P THW Q + L G+ +SG+ + NK+ D+ I+ +
Sbjct: 261 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQ 320
Query: 291 QGRHSA 296
G S+
Sbjct: 321 TGSKSS 326
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 13/306 (4%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
M++D VRT +YQ I QN FKDK+VLDVG G+GILS F A+AGA +YAVE S MA
Sbjct: 28 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH 87
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MGY L E ML + L+A+ K+L
Sbjct: 88 AEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYL 145
Query: 121 VDDGIVLPDKASLYLTAIEDAE-YKDD--KIEFW--NNVYGFDMSCIKKQAMME----PL 171
G + P ++L D + Y + K FW + +G D+S ++ A+ E P+
Sbjct: 146 KPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPV 205
Query: 172 VDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230
VDT D +I+ + T++ + GD PFK + +H L +FDV F
Sbjct: 206 VDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 264
Query: 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290
+ ST P THW Q + L G+ +SG+ + NK+ D+ I+ +
Sbjct: 265 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQ 324
Query: 291 QGRHSA 296
G S+
Sbjct: 325 TGSKSS 330
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 13/306 (4%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
M++D VRT +YQ I QN FKDK+VLDVG G+GILS F A+AGA +YAVE S MA
Sbjct: 23 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH 82
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MGY L E ML + L+A+ K+L
Sbjct: 83 AEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYL 140
Query: 121 VDDGIVLPDKASLYLTAIEDAE-YKDD--KIEFW--NNVYGFDMSCIKKQAMME----PL 171
G + P ++L D + Y + K FW + +G D+S ++ A+ E P+
Sbjct: 141 KPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPV 200
Query: 172 VDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230
VDT D +I+ + T++ + GD PFK + +H L +FDV F
Sbjct: 201 VDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 259
Query: 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290
+ ST P THW Q + L G+ +SG+ + NK+ D+ I+ +
Sbjct: 260 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQ 319
Query: 291 QGRHSA 296
G S+
Sbjct: 320 TGSKSS 325
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 13/306 (4%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
M++D VRT +YQ I QN FKDK+VLDVG G+GILS F A+AGA +YAVE S MA
Sbjct: 19 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH 78
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MGY L E ML + L+A+ K+L
Sbjct: 79 AEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYL 136
Query: 121 VDDGIVLPDKASLYLTAIEDAE-YKDD--KIEFW--NNVYGFDMSCIKKQAMME----PL 171
G + P ++L D + Y + K FW + +G D+S ++ A+ E P+
Sbjct: 137 KPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPV 196
Query: 172 VDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230
VDT D +I+ + T++ + GD PFK + +H L +FDV F
Sbjct: 197 VDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 255
Query: 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290
+ ST P THW Q + L G+ +SG+ + NK+ D+ I+ +
Sbjct: 256 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQ 315
Query: 291 QGRHSA 296
G S+
Sbjct: 316 TGSKSS 321
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 13/306 (4%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
M++D VRT +YQ I QN FKDK+VLDVG G+GILS F A+AGA +YAVE S MA
Sbjct: 136 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH 195
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MGY L E ML + L+A+ K+L
Sbjct: 196 AEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYL 253
Query: 121 VDDGIVLPDKASLYLTAIEDAE-YKDD--KIEFW--NNVYGFDMSCIKKQAMME----PL 171
G + P ++L D + Y + K FW + +G D+S ++ A+ E P+
Sbjct: 254 KPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPV 313
Query: 172 VDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230
VDT D +I+ + T++ + GD PFK + +H L +FDV F
Sbjct: 314 VDTFDI-RILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 372
Query: 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290
+ ST P THW Q + L G+ +SG+ + NK+ D+ I+ +
Sbjct: 373 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQ 432
Query: 291 QGRHSA 296
G S+
Sbjct: 433 TGSKSS 438
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 178/318 (55%), Gaps = 36/318 (11%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
ML D VR +Y N ++QNK F+ K VLDVG G+GIL+++ A+AGA VYAVE ++MA+
Sbjct: 41 MLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADH 100
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V+AN +++ V++G +E+I LP KVD+IISEWMGYFLL E+M ++V+ ARD+WL
Sbjct: 101 ARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWL 159
Query: 121 VDDGIVLPDKASLYLTAIED--AEYK----DDKIEFWNNV-------YGFDMSCIKKQAM 167
G++ P A ++L I+ A+ K D + W+N YG DM + K
Sbjct: 160 KPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFA 219
Query: 168 ME--------PLVDTVDQNQIVTNCQLLKTMD-----ISKMGPGDASFTAPFKLVAQRND 214
E + + ++ QI+ ++K MD +S++ ++ T+ + R
Sbjct: 220 EEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTR-- 277
Query: 215 YIHALVAYFDVTFT-----KCHKLMGFSTGP-KSRATHWKQTVLYLEDVLTICEGEAISG 268
+ +FDV F+ + + +T P + THW Q V + + + + EG+ ++
Sbjct: 278 -LCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNL 336
Query: 269 SLTVAPNKKNPRDVDIML 286
L ++ +K+N R ++I L
Sbjct: 337 GLLMSRSKENHRLMEIEL 354
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 120/283 (42%), Gaps = 32/283 (11%)
Query: 3 KDVVRTKSYQNVIYQ---NKFLFKDK-----VVLDVGAGTGIL---SLFCAKAGAAHV-- 49
KD ++ YQ IY+ ++ ++K V++ +GAG G L SL AK +
Sbjct: 329 KDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKL 388
Query: 50 YAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENML 109
YAVE + A + + + + + +TV+ + E P K DII+SE +G F +N L
Sbjct: 389 YAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFA--DNEL 445
Query: 110 NT-VLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMM 168
+ L +L DDG+ +P + + +L I + + +N V +A
Sbjct: 446 SPECLDGAQHFLKDDGVSIPGEYTSFLAPISSS-------KLYNEVRACREKDRDPEAQF 498
Query: 169 E-PLVDTVDQNQIVTNCQLLKTMDISKMGPG-DASFTAPFKLVAQRNDYIHALVAYFDVT 226
E P V + ++ Q T P D + + + N +H YF+
Sbjct: 499 EMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGYFE-- 556
Query: 227 FTKCHKLMGFSTGPKSRAT---HWKQTVLYLEDVLTICEGEAI 266
T ++ + S P++ + W + ++ +T+ EG+ I
Sbjct: 557 -TVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTI 598
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 17/154 (11%)
Query: 3 KDVVRTKSYQNVIYQ---NKFLFKDK-----VVLDVGAGTGIL---SLFCAKAGAAH--V 49
KD V+ YQ +Y+ ++ ++K ++ +GAG G L SL AK V
Sbjct: 349 KDPVKYSQYQQAVYKCLLDRVPEEEKETNIQILXVLGAGRGPLVNASLRAAKQAERKIKV 408
Query: 50 YAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENML 109
YAVE + A + + + + +TV+ G E + P K DII+SE +G F +N L
Sbjct: 409 YAVEKNPNAVITLEGWRYEEWGSQVTVVSGDXREWKAP-EKADIIVSELLGSF--GDNEL 465
Query: 110 NT-VLYARDKWLVDDGIVLPDKASLYLTAIEDAE 142
+ L +L DDG+ +P + + YL I ++
Sbjct: 466 SPECLDGAQHFLKDDGVSIPGEYTSYLAPISSSK 499
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 79
L ++ VLD+G+G G ++ + AH + ++ CS + NMA + V N N I
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEAN 109
Query: 80 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
I E P D+I S L EN N + KWL G +L
Sbjct: 110 DILTKEFPENNFDLIYSRDAILHLSLENK-NKLFQKCYKWLKPTGTLL 156
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 79
L ++ VLD+G+G G ++ + AH + ++ CS + NMA + V N N I
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEAN 109
Query: 80 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
I E P D+I S L EN N + KWL G +L
Sbjct: 110 DILTKEFPENNFDLIYSRDAILHLSLENK-NKLFQKCYKWLKPTGTLL 156
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 79
L ++ VLD+G+G G ++ + AH + ++ CS + NMA + V N N I
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEAN 109
Query: 80 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
I E P D+I S L EN N + KWL G +L
Sbjct: 110 DILTKEFPENNFDLIYSRDAILALSLENK-NKLFQKCYKWLKPTGTLL 156
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN--MAKQIVEANG 69
+N+I N+F +D+G+G G LS+ AK + A++ S+ N K I +AN
Sbjct: 34 ENII--NRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADAN- 90
Query: 70 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102
++ I +++G + I + D+I+S +F
Sbjct: 91 LNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 79
L ++ VLD+G+G G + + AH + ++ CS + N A + V N N I
Sbjct: 53 LNENSKVLDIGSGLGGGCXYINEKYGAHTHGIDICSNIVNXANERVSGN---NKIIFEAN 109
Query: 80 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
I E P D+I S L EN N + KWL G +L
Sbjct: 110 DILTKEFPENNFDLIYSRDAILHLSLENK-NKLFQKCYKWLKPTGTLL 156
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEE 83
K V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+
Sbjct: 123 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE--- 179
Query: 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 143
+ + F E +L+ Y + + ++ +L+
Sbjct: 180 ----------FLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALF--------G 221
Query: 144 KDDKIEFWNNVYG-FDMSCIKKQAMMEPLVDTVDQ-NQIVTNCQLLK 188
+D ++F+ +G +D S K +ME D V++ +IV++ LK
Sbjct: 222 GEDGLDFYREFFGRYDTSG--KIVLMEIGEDQVEELKKIVSDTVFLK 266
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEE 83
K V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+
Sbjct: 125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE--- 181
Query: 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 143
+ + F E +L+ Y + + ++ +L+
Sbjct: 182 ----------FLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALF--------G 223
Query: 144 KDDKIEFWNNVYG-FDMSCIKKQAMMEPLVDTVDQ-NQIVTNCQLLK 188
+D ++F+ +G +D S K +ME D V++ +IV++ LK
Sbjct: 224 GEDGLDFYREFFGRYDTSG--KIVLMEIGEDQVEELKKIVSDTVFLK 268
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEE 83
K V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+ E
Sbjct: 135 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 194
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANG-FSNVITVLKGKIEE 83
KVV D+GAGTG+LS GA V VE + A ++E G F V G + E
Sbjct: 51 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEA--VDVLIENLGEFKGKFKVFIGDVSE 108
Query: 84 IELPVTKVDIII 95
++VDI+I
Sbjct: 109 FN---SRVDIVI 117
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLK 78
L D + D+G GTG +LF A + ++ + + V+AN ++ + +
Sbjct: 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-ADRVKGIT 102
Query: 79 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAI 138
G ++ + ++D+I SE Y + FE +N K+L G + +AS + T+
Sbjct: 103 GSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFIAVSEAS-WFTSE 157
Query: 139 EDAEYKDDKIEFWNNVY 155
AE +D FW + Y
Sbjct: 158 RPAEIED----FWMDAY 170
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLK 78
L D + D+G GTG +LF A + ++ + + V+AN ++ + +
Sbjct: 50 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-ADRVKGIT 108
Query: 79 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAI 138
G ++ + ++D+I SE Y + FE +N K+L G + +AS + T+
Sbjct: 109 GSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFIAVSEAS-WFTSE 163
Query: 139 EDAEYKDDKIEFWNNVY 155
AE +D FW + Y
Sbjct: 164 RPAEIED----FWMDAY 176
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS----QMANMAKQIVEANGFSNVITV 76
L K V+ D+GAGTG S+ A G VYAVE S Q A + Q+ G++
Sbjct: 32 LPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVXRQQAVVHPQVEWFTGYA----- 85
Query: 77 LKGKIEEIELPVTKVDIIIS 96
E + LP VD +IS
Sbjct: 86 -----ENLALPDKSVDGVIS 100
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 80
F K VLD+G G G ++ A+ GA V ++ S+ M AK+ S V+ +
Sbjct: 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKA 98
Query: 81 IEEIELPVTKVDIIISEW-MGYFLLFENMLNTV 112
IE+I + ++++S + Y F+++ V
Sbjct: 99 IEDIAIEPDAYNVVLSSLALHYIASFDDICKKV 131
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 79
L + ++ D+G GTG + A V ++ S ++ + +G N +T + G
Sbjct: 44 LTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG 103
Query: 80 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 139
+++ ++D+I SE Y + FE LN K+L G + + S + T
Sbjct: 104 SXDDLPFRNEELDLIWSEGAIYNIGFERGLN----EWRKYLKKGGYLAVSECS-WFTDER 158
Query: 140 DAEYKDDKIEFWNNVY 155
AE D FW + Y
Sbjct: 159 PAEIND----FWXDAY 170
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 86
VLD+G GTG SLF + G V + + +K+ +E V V++ K E++
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVV-------LVDPSKEXLEVAREKGVKNVVEAKAEDLPF 110
Query: 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 134
P + +++ +G L + + + LV DG+++ + Y
Sbjct: 111 PSGAFEAVLA--LGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 27 VLDVGAGTGILSLFCAKAGA--------AHVYAVECSQMANMAKQIVEANGF-SNVITVL 77
VLDVG G G+LS+ A+ AVE S+ A +A VE F SNV + +
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASR-ATLAANGVEGEVFASNVFSEV 258
Query: 78 KGKIEEI 84
KG+ + I
Sbjct: 259 KGRFDXI 265
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 56
K++ N ++ L KD VVL++G G GIL+ AK A VY +E +
Sbjct: 9 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 55
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 56
K++ N ++ L KD VVL++G G GIL+ AK A VY +E +
Sbjct: 7 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 53
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 56
K++ N ++ L KD VVL++G G GIL+ AK A VY +E +
Sbjct: 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 82
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 77
+ + K V DVG G+GIL++ K GA V A + S + A++ NG ++
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK 115
Query: 78 KGKIEEIELPVTKVDIIISEWMGYFLL 104
+ +++ K D+I++ + LL
Sbjct: 116 TSLLADVD---GKFDLIVANILAEILL 139
>pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
Length = 259
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 85
++D+ +G GI+ L + A + VE + +A+ AK+ V N + I +++ +++I
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADXAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 86 --LPVTKVDII 94
+P + DI+
Sbjct: 113 DLIPKERADIV 123
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 86
VLD G G G ++ A+ G + +Q + AKQ EA G S+ + +++
Sbjct: 72 VLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVSDNXQFIHCAAQDVAS 131
Query: 87 PV-TKVDIII 95
+ T VD+I+
Sbjct: 132 HLETPVDLIL 141
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 86
VLD G G G ++ A+ G + +Q + AKQ EA G S+ + +++
Sbjct: 72 VLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVSDNXQFIHCAAQDVAS 131
Query: 87 PV-TKVDIII 95
+ T VD+I+
Sbjct: 132 HLETPVDLIL 141
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
Length = 375
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 82
K ++L G G ++ KA AHV AV CSQ A+ ++V G +VI G +E
Sbjct: 185 KRVLILGASGGVGTFAIQVMKAWDAHVTAV-CSQDAS---ELVRKLGADDVIDYKSGSVE 240
Query: 83 E 83
E
Sbjct: 241 E 241
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 150 FWNNVYGFDM--SCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDI 192
W+ V+ DM SC KK+ +M P V +N I+ L MD+
Sbjct: 614 LWSEVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDM 658
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 150 FWNNVYGFDM--SCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDI 192
W+ V+ DM SC KK+ +M P V +N I+ L MD+
Sbjct: 614 LWSEVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDM 658
>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC
Length = 405
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 143 YKDDKIEFWNNVYGF----DMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPG 198
Y D+++ NV GF D IKK L+ +N TNC L+K M+ K+ P
Sbjct: 249 YHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRN-TYTNCSLIKYMEKHKVKPD 307
Query: 199 DASF 202
+F
Sbjct: 308 SKAF 311
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 7 RTKSYQ--NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQ 63
+T SYQ N++ + L + + +LD+ +G G ++ AK G +V + ++ A MA++
Sbjct: 272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARR 330
Query: 64 IVEAN 68
VE N
Sbjct: 331 NVEIN 335
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQM-ANMAK 62
D VR +S N++ + L VLD+ AG+G L L GAA V VE Q A +
Sbjct: 27 DRVR-ESLFNIVTARRDL-TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIA 84
Query: 63 QIVEANGFSNVITVLKG 79
+ +EA G S T+ +G
Sbjct: 85 RNIEALGLSGA-TLRRG 100
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 7 RTKSYQ--NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQ 63
+T SYQ N++ + L + + +LD+ +G G ++ AK G +V + ++ A MA++
Sbjct: 272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARR 330
Query: 64 IVEAN 68
VE N
Sbjct: 331 NVEIN 335
>pdb|3BH2|A Chain A, Structural Studies Of Acetoacetate Decarboxylase
pdb|3BH2|B Chain B, Structural Studies Of Acetoacetate Decarboxylase
pdb|3BH2|C Chain C, Structural Studies Of Acetoacetate Decarboxylase
pdb|3BH2|D Chain D, Structural Studies Of Acetoacetate Decarboxylase
Length = 244
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 120 LVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQ 179
+V D ++ L A YK E++N VY DM ++K + EPL + ++
Sbjct: 1 MVKDEVIKQISTPLTSPAFPRGPYKFHNREYFNIVYRTDMDALRK-VVPEPL----EIDE 55
Query: 180 IVTNCQLLKTMDISKMGPGDASFTA-PFKLVAQRNDYIHALVAYFD 224
+ +++ D S +G S A P + DY+H + Y D
Sbjct: 56 PLVRFEIMAMHDTSGLGCYTESGQAIPVSFNGVKGDYLHMM--YLD 99
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 81
K+ V +DVG GTG ++L A VYA++ + A + + ++ +G + +T+ +G
Sbjct: 33 KNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGDA 91
Query: 82 EEIELPVTKVDIIISEWMGYFL 103
E + +DI + G L
Sbjct: 92 PEALCKIPDIDIAVVGGSGGEL 113
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI-VEANGFSNVITVLKGKI 81
+ + VLD+GAG G L+L A+ G A V VE + ++ Q +EAN L +
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALK--AQALHSDV 289
Query: 82 EEIELPVTKVDIIIS 96
+E + DII++
Sbjct: 290 DEALTEEARFDIIVT 304
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI-VEANGFSNVITVLKGKI 81
+ + VLD+GAG G L+L A+ G A V VE + ++ Q +EAN L +
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALK--AQALHSDV 289
Query: 82 EEIELPVTKVDIIIS 96
+E + DII++
Sbjct: 290 DEALTEEARFDIIVT 304
>pdb|2Q2E|B Chain B, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
Length = 621
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 227 FTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIML 286
F K +++GF + P+S T K+ V ++ L CE I + V + P V +++
Sbjct: 22 FEKNRQILGFDSAPRSLITTVKEAV---DNALDACEEAGILPDILVQVERTGPDYVTVII 78
Query: 287 K 287
+
Sbjct: 79 E 79
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 84
VV+D+ AG G S+ C A +YA++ + A + K+ ++ N + I + + E+
Sbjct: 198 VVVDMFAGVGPFSIAC--KNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV 255
Query: 85 ELPVTKVDIIISEWMGYFL 103
++ +V + + ++ F+
Sbjct: 256 DVKGNRVIMNLPKFAHKFI 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,029,076
Number of Sequences: 62578
Number of extensions: 368160
Number of successful extensions: 823
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 59
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)