Query 021852
Match_columns 306
No_of_seqs 356 out of 3082
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 9.9E-69 2.2E-73 464.5 27.5 306 1-306 38-346 (346)
2 KOG1500 Protein arginine N-met 100.0 1E-49 2.2E-54 340.3 19.3 288 1-291 155-452 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 2.9E-47 6.3E-52 351.6 23.6 268 2-288 157-446 (448)
4 KOG0822 Protein kinase inhibit 100.0 1.9E-33 4.1E-38 253.1 18.7 285 3-306 340-648 (649)
5 PTZ00357 methyltransferase; Pr 100.0 2.5E-27 5.5E-32 219.2 23.6 285 3-291 647-1039(1072)
6 KOG1501 Arginine N-methyltrans 100.0 4E-28 8.6E-33 214.3 12.3 250 1-256 38-320 (636)
7 COG2226 UbiE Methylase involve 99.8 1.6E-18 3.4E-23 146.9 12.7 115 9-127 37-153 (238)
8 PF12847 Methyltransf_18: Meth 99.7 2.9E-17 6.3E-22 124.8 11.7 104 23-127 1-108 (112)
9 COG4076 Predicted RNA methylas 99.7 3.8E-17 8.2E-22 130.0 11.1 131 2-141 15-146 (252)
10 PF01209 Ubie_methyltran: ubiE 99.7 5.8E-17 1.3E-21 138.6 10.3 113 11-127 35-150 (233)
11 COG2227 UbiG 2-polyprenyl-3-me 99.7 3.5E-16 7.5E-21 130.5 8.7 103 22-130 58-161 (243)
12 PRK00107 gidB 16S rRNA methylt 99.7 2.3E-15 4.9E-20 124.4 13.3 109 10-127 32-142 (187)
13 PF06325 PrmA: Ribosomal prote 99.6 1.4E-15 3E-20 133.6 11.5 108 8-127 148-256 (295)
14 PLN02233 ubiquinone biosynthes 99.6 5.3E-15 1.2E-19 129.1 14.1 115 10-127 60-179 (261)
15 PRK11207 tellurite resistance 99.6 4.8E-15 1E-19 124.1 12.5 109 15-127 22-131 (197)
16 PF13847 Methyltransf_31: Meth 99.6 5.6E-15 1.2E-19 118.6 12.1 101 22-127 2-107 (152)
17 PLN02396 hexaprenyldihydroxybe 99.6 3.9E-15 8.5E-20 132.8 12.3 102 22-127 130-232 (322)
18 COG2230 Cfa Cyclopropane fatty 99.6 6.2E-15 1.3E-19 127.3 13.0 111 13-127 62-173 (283)
19 PF02353 CMAS: Mycolic acid cy 99.6 5.5E-15 1.2E-19 129.2 12.7 108 15-127 54-163 (273)
20 PLN02244 tocopherol O-methyltr 99.6 7.8E-15 1.7E-19 132.8 14.2 103 22-127 117-220 (340)
21 TIGR00477 tehB tellurite resis 99.6 6.5E-15 1.4E-19 123.1 12.1 109 14-127 21-130 (195)
22 TIGR02752 MenG_heptapren 2-hep 99.6 1.1E-14 2.5E-19 125.0 13.9 116 8-127 30-148 (231)
23 PF08241 Methyltransf_11: Meth 99.6 2.7E-15 5.9E-20 110.0 8.5 93 28-127 1-94 (95)
24 TIGR00138 gidB 16S rRNA methyl 99.6 1.4E-14 3E-19 119.4 12.3 97 22-127 41-139 (181)
25 PF05175 MTS: Methyltransferas 99.6 3E-14 6.4E-19 116.5 13.6 103 23-127 31-137 (170)
26 COG2264 PrmA Ribosomal protein 99.6 1.1E-14 2.3E-19 126.8 11.2 108 11-127 152-260 (300)
27 PRK11036 putative S-adenosyl-L 99.6 1.5E-14 3.3E-19 126.1 12.1 102 22-127 43-146 (255)
28 PF03848 TehB: Tellurite resis 99.6 4.6E-14 1E-18 116.0 14.1 108 15-127 22-130 (192)
29 COG4123 Predicted O-methyltran 99.6 1.4E-14 2.9E-19 123.0 10.7 106 21-127 42-167 (248)
30 KOG1540 Ubiquinone biosynthesi 99.6 4E-14 8.6E-19 118.4 12.7 114 11-127 88-211 (296)
31 PF13659 Methyltransf_26: Meth 99.6 3.5E-14 7.7E-19 108.6 10.9 104 24-127 1-112 (117)
32 KOG1270 Methyltransferases [Co 99.5 1.6E-14 3.5E-19 121.4 7.5 116 5-127 64-192 (282)
33 TIGR00406 prmA ribosomal prote 99.5 1.7E-13 3.7E-18 121.3 14.0 108 10-127 148-256 (288)
34 PRK12335 tellurite resistance 99.5 9.2E-14 2E-18 123.2 12.1 101 22-127 119-220 (287)
35 PRK15451 tRNA cmo(5)U34 methyl 99.5 7.7E-14 1.7E-18 121.0 11.2 105 21-128 54-162 (247)
36 PRK15068 tRNA mo(5)U34 methylt 99.5 1.6E-13 3.5E-18 123.1 13.4 106 19-128 118-224 (322)
37 PTZ00098 phosphoethanolamine N 99.5 1.1E-13 2.4E-18 121.0 12.0 106 18-127 47-153 (263)
38 PRK11873 arsM arsenite S-adeno 99.5 1.4E-13 3.1E-18 121.1 12.7 105 20-128 74-181 (272)
39 TIGR02469 CbiT precorrin-6Y C5 99.5 4E-13 8.7E-18 103.6 13.7 103 19-128 15-120 (124)
40 PF13649 Methyltransf_25: Meth 99.5 4.7E-14 1E-18 105.2 7.6 95 27-124 1-101 (101)
41 TIGR00452 methyltransferase, p 99.5 2.5E-13 5.4E-18 120.8 13.5 111 14-128 112-223 (314)
42 PRK13944 protein-L-isoaspartat 99.5 3.7E-13 8E-18 113.4 13.2 106 13-127 62-170 (205)
43 PRK10258 biotin biosynthesis p 99.5 3.2E-13 6.9E-18 117.5 12.0 97 21-127 40-137 (251)
44 PRK15001 SAM-dependent 23S rib 99.5 6.3E-13 1.4E-17 120.8 14.1 104 23-127 228-337 (378)
45 PRK14967 putative methyltransf 99.5 8.6E-13 1.9E-17 112.7 14.1 112 11-127 25-156 (223)
46 PRK00517 prmA ribosomal protei 99.5 5.7E-13 1.2E-17 115.7 12.6 102 10-127 108-210 (250)
47 TIGR00537 hemK_rel_arch HemK-r 99.5 7.4E-13 1.6E-17 109.2 12.0 102 21-127 17-137 (179)
48 PRK00377 cbiT cobalt-precorrin 99.5 1.2E-12 2.5E-17 109.9 13.2 104 18-127 35-142 (198)
49 TIGR00740 methyltransferase, p 99.5 6.8E-13 1.5E-17 114.6 12.0 104 22-128 52-159 (239)
50 TIGR03533 L3_gln_methyl protei 99.5 1.3E-12 2.9E-17 115.3 14.1 103 23-127 121-248 (284)
51 COG2242 CobL Precorrin-6B meth 99.5 1.3E-12 2.9E-17 105.4 12.7 104 16-127 27-132 (187)
52 PRK00121 trmB tRNA (guanine-N( 99.5 5.1E-13 1.1E-17 112.3 10.8 104 23-127 40-153 (202)
53 smart00828 PKS_MT Methyltransf 99.5 4.8E-13 1.1E-17 114.3 10.7 99 25-127 1-101 (224)
54 PRK14103 trans-aconitate 2-met 99.5 5.4E-13 1.2E-17 116.3 11.1 99 17-127 23-123 (255)
55 TIGR00080 pimt protein-L-isoas 99.5 8.6E-13 1.9E-17 112.1 12.0 104 14-127 68-174 (215)
56 PF05401 NodS: Nodulation prot 99.5 3.4E-13 7.4E-18 109.8 9.0 101 22-127 42-143 (201)
57 PRK13942 protein-L-isoaspartat 99.5 9.2E-13 2E-17 111.5 12.0 101 17-127 70-173 (212)
58 PRK08287 cobalt-precorrin-6Y C 99.4 2.3E-12 4.9E-17 107.1 14.0 100 19-127 27-128 (187)
59 PLN02336 phosphoethanolamine N 99.4 1.1E-12 2.5E-17 124.3 13.5 103 20-127 263-366 (475)
60 PRK01683 trans-aconitate 2-met 99.4 9.6E-13 2.1E-17 114.9 12.0 101 17-127 25-127 (258)
61 PRK15128 23S rRNA m(5)C1962 me 99.4 1.3E-12 2.7E-17 120.1 12.1 108 22-130 219-339 (396)
62 PRK11805 N5-glutamine S-adenos 99.4 2.6E-12 5.6E-17 114.5 13.7 101 25-127 135-260 (307)
63 PRK00216 ubiE ubiquinone/menaq 99.4 2.5E-12 5.3E-17 110.8 13.0 105 20-127 48-155 (239)
64 TIGR01177 conserved hypothetic 99.4 1.9E-12 4E-17 117.0 12.7 113 12-127 171-291 (329)
65 PRK08317 hypothetical protein; 99.4 3.3E-12 7.2E-17 109.8 13.5 115 9-128 5-122 (241)
66 PRK06922 hypothetical protein; 99.4 2.2E-12 4.7E-17 122.7 13.3 106 20-127 415-534 (677)
67 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.8E-12 6.1E-17 115.0 12.2 99 22-127 112-212 (340)
68 PF13489 Methyltransf_23: Meth 99.4 1.3E-12 2.7E-17 105.5 8.9 106 7-127 5-112 (161)
69 TIGR00091 tRNA (guanine-N(7)-) 99.4 3.1E-12 6.8E-17 106.8 11.0 104 23-127 16-129 (194)
70 PRK05785 hypothetical protein; 99.4 5E-12 1.1E-16 108.0 12.3 91 22-124 50-141 (226)
71 PRK14966 unknown domain/N5-glu 99.4 8.4E-12 1.8E-16 113.8 13.6 116 7-127 237-378 (423)
72 TIGR00536 hemK_fam HemK family 99.4 1E-11 2.2E-16 109.9 13.7 101 25-127 116-241 (284)
73 TIGR02021 BchM-ChlM magnesium 99.4 9.5E-12 2.1E-16 106.0 12.8 102 21-127 53-155 (219)
74 PRK04266 fibrillarin; Provisio 99.4 1.1E-11 2.4E-16 105.6 12.8 100 19-127 68-173 (226)
75 PRK09489 rsmC 16S ribosomal RN 99.4 9.3E-12 2E-16 112.4 13.1 101 23-127 196-300 (342)
76 PRK11705 cyclopropane fatty ac 99.4 8.5E-12 1.8E-16 114.5 12.9 105 15-127 159-264 (383)
77 PRK07402 precorrin-6B methylas 99.4 1.6E-11 3.4E-16 102.8 13.5 105 15-127 32-139 (196)
78 PRK11783 rlmL 23S rRNA m(2)G24 99.4 5.5E-12 1.2E-16 124.4 12.3 105 22-127 537-653 (702)
79 COG2813 RsmC 16S RNA G1207 met 99.4 1E-11 2.3E-16 107.6 12.5 110 13-127 148-263 (300)
80 TIGR02716 C20_methyl_CrtF C-20 99.4 1.3E-11 2.9E-16 110.4 13.6 110 15-127 141-251 (306)
81 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.4E-11 3.1E-16 104.9 13.2 111 11-127 27-140 (223)
82 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.3E-11 2.9E-16 102.8 12.6 101 22-127 52-156 (199)
83 COG2263 Predicted RNA methylas 99.4 1E-11 2.2E-16 100.0 11.3 79 16-99 38-117 (198)
84 PHA03412 putative methyltransf 99.3 2.1E-11 4.6E-16 102.8 13.4 102 23-131 49-164 (241)
85 COG4106 Tam Trans-aconitate me 99.3 2E-12 4.2E-17 105.8 6.8 110 7-127 15-126 (257)
86 PF08242 Methyltransf_12: Meth 99.3 4.4E-13 9.6E-18 99.5 2.8 95 28-126 1-99 (99)
87 PRK00312 pcm protein-L-isoaspa 99.3 1.6E-11 3.5E-16 104.0 12.7 102 15-127 70-172 (212)
88 KOG1271 Methyltransferases [Ge 99.3 7.5E-12 1.6E-16 99.6 9.6 107 21-127 64-178 (227)
89 PLN02336 phosphoethanolamine N 99.3 9.9E-12 2.1E-16 118.0 11.9 112 13-129 27-141 (475)
90 PLN02781 Probable caffeoyl-CoA 99.3 1E-11 2.2E-16 106.6 10.6 104 21-130 66-178 (234)
91 COG2518 Pcm Protein-L-isoaspar 99.3 8.9E-12 1.9E-16 102.8 9.6 100 17-127 66-166 (209)
92 PRK14968 putative methyltransf 99.3 3.1E-11 6.6E-16 100.1 12.9 105 21-127 21-145 (188)
93 TIGR03534 RF_mod_PrmC protein- 99.3 3.7E-11 8.1E-16 104.3 14.0 103 23-127 87-214 (251)
94 TIGR02072 BioC biotin biosynth 99.3 1.6E-11 3.5E-16 105.6 11.7 98 22-127 33-132 (240)
95 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.2E-11 4.7E-16 106.6 12.3 108 19-127 67-196 (264)
96 COG2519 GCD14 tRNA(1-methylade 99.3 3E-11 6.5E-16 101.9 12.3 104 15-127 86-192 (256)
97 COG2890 HemK Methylase of poly 99.3 3.9E-11 8.5E-16 105.5 13.2 98 26-127 113-235 (280)
98 TIGR01983 UbiG ubiquinone bios 99.3 3.9E-11 8.5E-16 102.4 12.9 119 4-127 26-146 (224)
99 PRK09328 N5-glutamine S-adenos 99.3 5E-11 1.1E-15 105.0 13.8 117 8-127 93-235 (275)
100 PRK01544 bifunctional N5-gluta 99.3 3.1E-11 6.7E-16 114.6 13.2 104 23-128 138-267 (506)
101 PLN03075 nicotianamine synthas 99.3 4.8E-11 1E-15 104.5 13.3 103 23-127 123-230 (296)
102 smart00138 MeTrc Methyltransfe 99.3 1.7E-11 3.7E-16 107.1 10.1 105 22-127 98-239 (264)
103 TIGR00095 RNA methyltransferas 99.3 5.8E-11 1.3E-15 98.5 12.7 112 9-127 38-156 (189)
104 PRK14901 16S rRNA methyltransf 99.3 3.6E-11 7.8E-16 112.5 12.7 108 19-127 248-381 (434)
105 PF08003 Methyltransf_9: Prote 99.3 4.1E-11 8.9E-16 103.9 11.6 104 21-128 113-217 (315)
106 KOG4300 Predicted methyltransf 99.3 1.3E-11 2.9E-16 100.2 8.0 99 25-127 78-179 (252)
107 PRK10901 16S rRNA methyltransf 99.3 5.1E-11 1.1E-15 111.3 13.0 107 19-127 240-369 (427)
108 PRK04457 spermidine synthase; 99.3 3.2E-11 6.8E-16 105.3 10.9 118 10-127 52-174 (262)
109 PRK14121 tRNA (guanine-N(7)-)- 99.3 5.7E-11 1.2E-15 107.7 12.8 105 22-127 121-232 (390)
110 TIGR03704 PrmC_rel_meth putati 99.3 8.8E-11 1.9E-15 101.9 13.5 100 23-127 86-213 (251)
111 PF03602 Cons_hypoth95: Conser 99.3 2.7E-11 5.8E-16 99.8 9.7 117 4-127 26-150 (183)
112 TIGR03587 Pse_Me-ase pseudamin 99.3 6.3E-11 1.4E-15 99.6 12.0 93 21-121 41-135 (204)
113 PRK14904 16S rRNA methyltransf 99.3 7.8E-11 1.7E-15 110.6 13.9 108 19-128 246-375 (445)
114 COG1092 Predicted SAM-dependen 99.3 3.2E-11 7E-16 109.6 10.8 110 22-131 216-337 (393)
115 TIGR00563 rsmB ribosomal RNA s 99.3 6.3E-11 1.4E-15 110.7 13.1 110 19-128 234-366 (426)
116 PRK14903 16S rRNA methyltransf 99.3 6.5E-11 1.4E-15 110.4 12.9 112 19-131 233-367 (431)
117 PRK11188 rrmJ 23S rRNA methylt 99.3 4.3E-11 9.3E-16 101.0 10.7 96 21-127 49-162 (209)
118 PRK13943 protein-L-isoaspartat 99.3 8.7E-11 1.9E-15 105.0 12.9 103 15-127 72-177 (322)
119 PRK05134 bifunctional 3-demeth 99.3 8.1E-11 1.7E-15 101.2 12.3 108 14-127 39-148 (233)
120 PRK14902 16S rRNA methyltransf 99.3 6.8E-11 1.5E-15 111.1 12.8 107 19-127 246-376 (444)
121 PF10672 Methyltrans_SAM: S-ad 99.3 5.9E-11 1.3E-15 103.8 11.4 106 22-127 122-235 (286)
122 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.1E-10 2.3E-15 98.7 12.6 101 22-127 33-149 (213)
123 PRK11088 rrmA 23S rRNA methylt 99.2 5.1E-11 1.1E-15 104.8 10.9 89 23-127 85-178 (272)
124 PF01135 PCMT: Protein-L-isoas 99.2 2.7E-11 5.9E-16 101.7 8.7 103 15-127 64-169 (209)
125 PRK06202 hypothetical protein; 99.2 5.9E-11 1.3E-15 102.0 10.7 101 21-127 58-164 (232)
126 KOG1501 Arginine N-methyltrans 99.2 2.6E-11 5.6E-16 108.5 8.2 227 37-290 381-632 (636)
127 PRK07580 Mg-protoporphyrin IX 99.2 1.7E-10 3.8E-15 98.8 13.2 101 21-126 61-162 (230)
128 smart00650 rADc Ribosomal RNA 99.2 9.3E-11 2E-15 95.8 10.7 105 15-127 5-110 (169)
129 PRK00811 spermidine synthase; 99.2 1.3E-10 2.8E-15 102.6 11.7 106 22-127 75-188 (283)
130 COG0742 N6-adenine-specific me 99.2 2.2E-10 4.7E-15 93.2 12.0 117 4-127 27-151 (187)
131 TIGR03438 probable methyltrans 99.2 2E-10 4.3E-15 102.5 12.9 106 21-127 61-174 (301)
132 PF10294 Methyltransf_16: Puta 99.2 1E-10 2.3E-15 95.7 10.0 106 19-127 41-153 (173)
133 COG4122 Predicted O-methyltran 99.2 1.3E-10 2.8E-15 97.4 10.6 105 21-131 57-167 (219)
134 PHA03411 putative methyltransf 99.2 2.5E-10 5.5E-15 98.5 12.6 72 23-101 64-137 (279)
135 PF08704 GCD14: tRNA methyltra 99.2 1.2E-10 2.5E-15 99.9 10.4 105 15-127 32-143 (247)
136 PLN02476 O-methyltransferase 99.2 1.6E-10 3.4E-15 100.6 11.2 104 21-130 116-228 (278)
137 PRK03522 rumB 23S rRNA methylu 99.2 1.9E-10 4.2E-15 103.2 12.1 98 22-127 172-271 (315)
138 PRK13255 thiopurine S-methyltr 99.2 3.1E-10 6.7E-15 96.2 12.4 102 21-127 35-152 (218)
139 PRK13168 rumA 23S rRNA m(5)U19 99.2 2.7E-10 5.9E-15 106.9 12.9 110 9-127 283-397 (443)
140 PF01596 Methyltransf_3: O-met 99.2 1.7E-10 3.6E-15 96.7 10.1 104 21-130 43-155 (205)
141 KOG2904 Predicted methyltransf 99.2 4.9E-10 1.1E-14 94.9 12.7 119 8-127 130-282 (328)
142 cd02440 AdoMet_MTases S-adenos 99.2 3.2E-10 7E-15 83.4 10.3 100 26-128 1-102 (107)
143 PLN02585 magnesium protoporphy 99.2 4E-10 8.7E-15 100.5 12.5 100 22-127 143-247 (315)
144 TIGR00438 rrmJ cell division p 99.1 2.5E-10 5.4E-15 94.9 9.8 99 18-127 27-143 (188)
145 PTZ00146 fibrillarin; Provisio 99.1 5.6E-10 1.2E-14 97.4 12.2 111 9-127 115-234 (293)
146 PLN02672 methionine S-methyltr 99.1 3.8E-10 8.3E-15 113.9 12.3 119 8-127 102-275 (1082)
147 COG2521 Predicted archaeal met 99.1 4.6E-11 1E-15 98.8 4.1 121 7-127 116-242 (287)
148 TIGR02085 meth_trns_rumB 23S r 99.1 7.5E-10 1.6E-14 101.6 11.6 98 22-127 232-331 (374)
149 COG1041 Predicted DNA modifica 99.1 1E-09 2.3E-14 97.0 11.5 114 11-127 185-307 (347)
150 KOG3010 Methyltransferase [Gen 99.1 9.2E-11 2E-15 97.7 4.6 101 22-127 31-133 (261)
151 TIGR00479 rumA 23S rRNA (uraci 99.1 1.1E-09 2.4E-14 102.7 12.3 110 10-127 279-393 (431)
152 PF02475 Met_10: Met-10+ like- 99.1 7.8E-10 1.7E-14 92.0 9.5 110 7-126 87-198 (200)
153 PLN02366 spermidine synthase 99.1 1.7E-09 3.7E-14 96.2 12.1 122 10-131 76-207 (308)
154 TIGR02081 metW methionine bios 99.1 9.7E-10 2.1E-14 91.8 9.6 92 21-123 11-105 (194)
155 PF03291 Pox_MCEL: mRNA cappin 99.0 1.7E-09 3.7E-14 97.0 11.5 105 23-127 62-183 (331)
156 PRK01581 speE spermidine synth 99.0 1.9E-09 4.1E-14 96.6 11.3 117 11-127 136-265 (374)
157 PLN02589 caffeoyl-CoA O-methyl 99.0 3.9E-09 8.5E-14 90.8 12.7 105 21-131 77-191 (247)
158 PF07021 MetW: Methionine bios 99.0 8.9E-10 1.9E-14 89.7 8.1 91 21-122 11-104 (193)
159 PF01170 UPF0020: Putative RNA 99.0 4.2E-09 9.1E-14 86.7 11.4 117 9-126 14-147 (179)
160 PRK03612 spermidine synthase; 99.0 1.8E-09 3.9E-14 103.2 10.3 108 22-129 296-414 (521)
161 TIGR00417 speE spermidine synt 99.0 7.5E-09 1.6E-13 90.9 12.7 107 23-129 72-185 (270)
162 PTZ00338 dimethyladenosine tra 99.0 2.8E-09 6E-14 94.3 9.9 86 11-99 24-110 (294)
163 PRK11727 23S rRNA mA1618 methy 99.0 4.8E-09 1E-13 93.5 11.3 77 23-99 114-198 (321)
164 PRK14896 ksgA 16S ribosomal RN 98.9 5.9E-09 1.3E-13 91.0 10.3 83 11-99 17-100 (258)
165 PRK04338 N(2),N(2)-dimethylgua 98.9 6.1E-09 1.3E-13 95.4 10.3 98 24-129 58-157 (382)
166 PRK00274 ksgA 16S ribosomal RN 98.9 4.1E-09 8.9E-14 92.6 8.6 83 12-99 31-114 (272)
167 PF02527 GidB: rRNA small subu 98.9 2.9E-08 6.3E-13 81.6 12.5 110 9-127 33-145 (184)
168 COG4976 Predicted methyltransf 98.9 4.3E-10 9.4E-15 92.9 1.6 96 23-128 125-223 (287)
169 KOG1975 mRNA cap methyltransfe 98.9 6.3E-09 1.4E-13 90.2 8.7 118 10-127 104-234 (389)
170 TIGR00478 tly hemolysin TlyA f 98.9 8.6E-09 1.9E-13 87.6 9.0 51 10-60 62-113 (228)
171 PF02390 Methyltransf_4: Putat 98.9 1.8E-08 3.9E-13 84.0 10.3 102 25-127 19-130 (195)
172 COG2520 Predicted methyltransf 98.9 1.5E-08 3.3E-13 90.4 9.9 100 21-127 186-286 (341)
173 TIGR02143 trmA_only tRNA (urac 98.9 2.2E-08 4.7E-13 91.2 11.0 93 25-127 199-308 (353)
174 PRK05031 tRNA (uracil-5-)-meth 98.9 2.1E-08 4.6E-13 91.6 11.0 94 24-127 207-317 (362)
175 PRK13256 thiopurine S-methyltr 98.8 4.7E-08 1E-12 82.8 11.2 105 21-127 41-160 (226)
176 KOG3420 Predicted RNA methylas 98.8 1.1E-08 2.4E-13 78.7 6.2 81 17-99 42-123 (185)
177 KOG3191 Predicted N6-DNA-methy 98.8 9E-08 1.9E-12 76.6 11.4 100 24-127 44-165 (209)
178 KOG2899 Predicted methyltransf 98.8 3.4E-08 7.4E-13 82.5 9.1 108 19-127 54-206 (288)
179 KOG0820 Ribosomal RNA adenine 98.8 4.2E-08 9.1E-13 83.3 9.3 86 11-99 46-132 (315)
180 PF00891 Methyltransf_2: O-met 98.8 1.2E-07 2.5E-12 82.0 12.0 100 17-127 94-196 (241)
181 PLN02823 spermine synthase 98.7 7E-08 1.5E-12 86.8 10.4 118 10-127 88-217 (336)
182 PRK04148 hypothetical protein; 98.7 1.5E-07 3.3E-12 72.7 10.8 79 10-97 3-84 (134)
183 COG2265 TrmA SAM-dependent met 98.7 9.2E-08 2E-12 88.8 11.2 113 7-127 277-393 (432)
184 KOG1541 Predicted protein carb 98.7 8.3E-08 1.8E-12 79.1 9.4 98 23-127 50-157 (270)
185 TIGR00755 ksgA dimethyladenosi 98.7 1.5E-07 3.3E-12 81.9 11.8 82 12-99 18-103 (253)
186 PRK11933 yebU rRNA (cytosine-C 98.7 2.1E-07 4.5E-12 87.4 12.6 111 20-132 110-244 (470)
187 PF05891 Methyltransf_PK: AdoM 98.7 6E-08 1.3E-12 80.6 7.4 103 23-127 55-158 (218)
188 PF05724 TPMT: Thiopurine S-me 98.7 2E-07 4.4E-12 78.9 10.8 107 19-127 33-152 (218)
189 COG3897 Predicted methyltransf 98.7 8E-08 1.7E-12 77.8 7.7 105 13-126 69-174 (218)
190 KOG2361 Predicted methyltransf 98.7 1.8E-07 3.9E-12 78.3 9.7 106 26-134 74-187 (264)
191 COG0030 KsgA Dimethyladenosine 98.7 1.5E-07 3.3E-12 80.8 9.5 87 12-103 19-107 (259)
192 PLN02232 ubiquinone biosynthes 98.7 7E-08 1.5E-12 78.0 7.0 75 50-127 1-78 (160)
193 TIGR00308 TRM1 tRNA(guanine-26 98.6 2.4E-07 5.2E-12 84.6 10.9 96 24-127 45-144 (374)
194 COG0220 Predicted S-adenosylme 98.6 2.5E-07 5.4E-12 78.6 10.2 102 25-127 50-161 (227)
195 PF05219 DREV: DREV methyltran 98.6 2.8E-07 6.1E-12 78.5 10.3 91 23-127 94-185 (265)
196 COG0116 Predicted N6-adenine-s 98.6 5.3E-07 1.1E-11 81.2 12.5 119 8-127 176-341 (381)
197 PF05958 tRNA_U5-meth_tr: tRNA 98.6 3.1E-07 6.7E-12 83.7 11.1 85 16-103 190-291 (352)
198 COG0357 GidB Predicted S-adeno 98.6 3.6E-07 7.7E-12 76.6 10.2 95 24-127 68-165 (215)
199 COG3963 Phospholipid N-methylt 98.6 5.2E-07 1.1E-11 71.3 10.4 104 17-127 42-153 (194)
200 PF06080 DUF938: Protein of un 98.6 3.1E-07 6.7E-12 76.0 9.4 105 22-127 23-138 (204)
201 PRK11783 rlmL 23S rRNA m(2)G24 98.6 3.8E-07 8.3E-12 90.3 11.7 117 9-126 175-343 (702)
202 COG1189 Predicted rRNA methyla 98.6 3.2E-07 7E-12 76.9 9.3 105 10-127 66-175 (245)
203 PF09445 Methyltransf_15: RNA 98.6 1.7E-07 3.6E-12 75.2 6.8 74 25-99 1-78 (163)
204 KOG1663 O-methyltransferase [S 98.6 1.7E-06 3.7E-11 72.1 12.5 109 21-135 71-188 (237)
205 PF08123 DOT1: Histone methyla 98.5 6.6E-07 1.4E-11 74.9 10.0 113 10-127 30-155 (205)
206 PF01564 Spermine_synth: Sperm 98.5 6E-07 1.3E-11 77.7 9.9 118 10-127 61-188 (246)
207 KOG2915 tRNA(1-methyladenosine 98.5 1.4E-06 3E-11 74.2 11.6 106 14-127 96-207 (314)
208 KOG1661 Protein-L-isoaspartate 98.5 1.3E-06 2.8E-11 71.7 10.2 99 20-127 79-190 (237)
209 PF12147 Methyltransf_20: Puta 98.5 2.7E-06 5.8E-11 73.5 12.6 106 22-127 134-246 (311)
210 PRK00536 speE spermidine synth 98.5 1.1E-06 2.4E-11 76.2 10.3 114 10-135 57-176 (262)
211 COG0421 SpeE Spermidine syntha 98.5 1.3E-06 2.7E-11 76.7 10.6 107 25-131 78-191 (282)
212 KOG2940 Predicted methyltransf 98.4 1.4E-07 3.1E-12 78.2 3.6 98 24-127 73-171 (325)
213 COG0293 FtsJ 23S rRNA methylas 98.4 7E-07 1.5E-11 73.9 7.3 111 6-127 25-156 (205)
214 PF01728 FtsJ: FtsJ-like methy 98.4 3.3E-07 7.2E-12 75.6 4.5 94 23-127 23-136 (181)
215 PF04816 DUF633: Family of unk 98.4 2.8E-06 6.1E-11 71.2 10.0 102 27-140 1-104 (205)
216 PF07942 N2227: N2227-like pro 98.4 6E-06 1.3E-10 71.7 12.2 119 5-127 31-199 (270)
217 PF01739 CheR: CheR methyltran 98.4 6.7E-06 1.4E-10 68.5 11.8 122 4-127 8-172 (196)
218 PRK11760 putative 23S rRNA C24 98.4 1.6E-06 3.6E-11 76.9 8.4 88 21-123 209-296 (357)
219 KOG2187 tRNA uracil-5-methyltr 98.4 2.4E-06 5.2E-11 78.9 9.5 109 8-123 368-483 (534)
220 PRK01544 bifunctional N5-gluta 98.3 3.5E-06 7.7E-11 80.3 10.5 104 23-127 347-459 (506)
221 PF05148 Methyltransf_8: Hypot 98.3 2.2E-06 4.7E-11 70.8 7.7 93 21-141 70-162 (219)
222 PRK10611 chemotaxis methyltran 98.3 2.1E-06 4.6E-11 75.5 8.1 103 24-127 116-259 (287)
223 COG0144 Sun tRNA and rRNA cyto 98.3 1.6E-05 3.4E-10 72.5 13.2 114 18-132 151-290 (355)
224 PF00398 RrnaAD: Ribosomal RNA 98.3 2.9E-06 6.3E-11 74.2 7.7 88 8-99 15-106 (262)
225 PRK00050 16S rRNA m(4)C1402 me 98.2 3.9E-06 8.6E-11 74.0 8.1 77 19-98 15-98 (296)
226 COG1352 CheR Methylase of chem 98.2 7.1E-06 1.5E-10 71.3 8.7 103 23-127 96-238 (268)
227 KOG3045 Predicted RNA methylas 98.2 5.7E-06 1.2E-10 70.0 7.6 90 22-141 179-268 (325)
228 PF02384 N6_Mtase: N-6 DNA Met 98.2 1.4E-05 3E-10 71.8 10.5 113 15-127 38-180 (311)
229 PRK10742 putative methyltransf 98.2 1.8E-05 3.9E-10 67.6 10.0 87 14-101 77-175 (250)
230 PF13679 Methyltransf_32: Meth 98.1 1.1E-05 2.3E-10 63.8 8.0 75 21-96 23-105 (141)
231 PF05971 Methyltransf_10: Prot 98.1 2.1E-05 4.5E-10 69.2 10.1 77 24-101 103-188 (299)
232 PF03141 Methyltransf_29: Puta 98.1 3.3E-06 7.2E-11 78.1 4.7 118 8-134 98-223 (506)
233 TIGR01444 fkbM_fam methyltrans 98.1 1.4E-05 3E-10 63.1 7.6 57 26-83 1-59 (143)
234 COG4262 Predicted spermidine s 98.1 2E-05 4.4E-10 69.9 9.1 126 11-136 275-413 (508)
235 KOG1709 Guanidinoacetate methy 98.0 3.5E-05 7.6E-10 63.6 9.2 99 22-127 100-203 (271)
236 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 3.2E-05 6.9E-10 68.4 9.3 108 19-127 81-216 (283)
237 PF13578 Methyltransf_24: Meth 98.0 3.5E-06 7.6E-11 63.0 2.4 98 28-129 1-104 (106)
238 PF01269 Fibrillarin: Fibrilla 98.0 0.00016 3.4E-09 60.5 12.3 111 9-127 56-175 (229)
239 KOG2730 Methylase [General fun 97.9 1.3E-05 2.9E-10 66.3 4.8 98 23-124 94-196 (263)
240 TIGR02987 met_A_Alw26 type II 97.9 9E-05 1.9E-09 71.4 10.0 76 23-99 31-121 (524)
241 KOG3201 Uncharacterized conser 97.9 9.8E-06 2.1E-10 63.8 2.7 115 10-127 16-137 (201)
242 COG2384 Predicted SAM-dependen 97.9 0.00032 6.9E-09 58.4 11.6 105 6-121 5-111 (226)
243 PHA01634 hypothetical protein 97.8 8.2E-05 1.8E-09 56.2 7.2 73 21-97 26-99 (156)
244 PF06962 rRNA_methylase: Putat 97.8 8.3E-05 1.8E-09 57.9 6.6 79 48-127 1-89 (140)
245 PF09243 Rsm22: Mitochondrial 97.8 0.00031 6.8E-09 61.8 11.0 102 19-122 29-133 (274)
246 COG0500 SmtA SAM-dependent met 97.7 0.00052 1.1E-08 53.8 11.0 95 27-127 52-152 (257)
247 KOG4589 Cell division protein 97.7 0.00017 3.8E-09 58.3 7.6 98 19-127 65-181 (232)
248 PF03059 NAS: Nicotianamine sy 97.7 0.00045 9.8E-09 60.3 10.7 102 24-127 121-227 (276)
249 KOG1269 SAM-dependent methyltr 97.7 8.6E-05 1.9E-09 67.5 6.3 106 19-127 106-212 (364)
250 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 0.00018 3.9E-09 62.2 7.9 108 20-127 53-196 (256)
251 KOG4058 Uncharacterized conser 97.6 0.00038 8.2E-09 54.1 8.1 98 22-127 71-169 (199)
252 TIGR03439 methyl_EasF probable 97.6 0.0012 2.6E-08 59.1 12.6 113 11-127 66-194 (319)
253 COG1889 NOP1 Fibrillarin-like 97.6 0.0013 2.8E-08 54.1 11.1 111 9-127 59-177 (231)
254 KOG3178 Hydroxyindole-O-methyl 97.6 0.00041 9E-09 61.7 8.9 94 24-127 178-272 (342)
255 KOG1331 Predicted methyltransf 97.5 4.4E-05 9.6E-10 65.8 1.7 96 22-127 44-140 (293)
256 PF02005 TRM: N2,N2-dimethylgu 97.5 0.00056 1.2E-08 62.7 9.0 98 23-127 49-151 (377)
257 KOG1122 tRNA and rRNA cytosine 97.5 0.0013 2.9E-08 59.7 10.5 113 19-133 237-374 (460)
258 KOG3987 Uncharacterized conser 97.4 6.5E-05 1.4E-09 61.6 1.3 105 9-127 96-204 (288)
259 KOG2798 Putative trehalase [Ca 97.2 0.0043 9.3E-08 54.4 10.8 119 5-127 125-293 (369)
260 PF01861 DUF43: Protein of unk 97.2 0.0081 1.7E-07 51.1 12.2 101 18-125 39-143 (243)
261 PF07091 FmrO: Ribosomal RNA m 97.2 0.0029 6.3E-08 54.0 8.9 82 10-96 94-177 (251)
262 PF04672 Methyltransf_19: S-ad 97.1 0.0037 8E-08 54.1 9.5 103 23-127 68-187 (267)
263 KOG1227 Putative methyltransfe 97.1 0.00025 5.5E-09 61.5 2.2 97 23-127 194-293 (351)
264 TIGR00006 S-adenosyl-methyltra 97.1 0.0045 9.8E-08 54.9 9.6 79 18-98 15-100 (305)
265 KOG2671 Putative RNA methylase 97.0 0.001 2.2E-08 58.9 5.2 80 19-99 204-293 (421)
266 PF04445 SAM_MT: Putative SAM- 97.0 0.0023 5E-08 54.4 7.1 86 15-101 65-162 (234)
267 PF04989 CmcI: Cephalosporin h 97.0 0.0039 8.4E-08 52.0 8.1 115 3-127 16-144 (206)
268 KOG2920 Predicted methyltransf 97.0 0.00067 1.5E-08 58.7 3.6 106 19-127 112-231 (282)
269 KOG3115 Methyltransferase-like 96.9 0.0028 6.1E-08 52.1 6.5 104 23-127 60-180 (249)
270 KOG2352 Predicted spermine/spe 96.9 0.0073 1.6E-07 56.2 9.4 104 21-127 45-158 (482)
271 COG4798 Predicted methyltransf 96.9 0.0016 3.6E-08 53.1 4.6 107 19-127 44-163 (238)
272 PF11968 DUF3321: Putative met 96.9 0.0046 1E-07 51.6 7.4 84 25-125 53-139 (219)
273 KOG2793 Putative N2,N2-dimethy 96.8 0.0087 1.9E-07 51.4 9.0 102 23-127 86-196 (248)
274 PF03141 Methyltransf_29: Puta 96.7 0.0031 6.6E-08 58.9 5.6 96 25-127 367-464 (506)
275 COG1063 Tdh Threonine dehydrog 96.3 0.034 7.4E-07 50.8 10.2 95 20-127 165-266 (350)
276 COG1867 TRM1 N2,N2-dimethylgua 96.3 0.012 2.7E-07 52.9 7.0 96 24-127 53-151 (380)
277 cd00315 Cyt_C5_DNA_methylase C 96.3 0.0076 1.7E-07 53.1 5.4 67 26-99 2-71 (275)
278 PRK09880 L-idonate 5-dehydroge 96.3 0.022 4.8E-07 51.7 8.6 95 20-127 166-263 (343)
279 KOG1099 SAM-dependent methyltr 96.2 0.0062 1.3E-07 51.1 4.3 91 25-127 43-160 (294)
280 COG1064 AdhP Zn-dependent alco 96.2 0.033 7.2E-07 50.1 9.1 90 19-127 162-256 (339)
281 KOG1562 Spermidine synthase [A 96.1 0.019 4.1E-07 50.1 6.8 106 22-127 120-233 (337)
282 KOG1253 tRNA methyltransferase 96.0 0.0035 7.6E-08 58.2 1.8 100 22-128 108-214 (525)
283 COG5459 Predicted rRNA methyla 96.0 0.021 4.5E-07 51.0 6.4 110 17-127 107-222 (484)
284 COG0286 HsdM Type I restrictio 96.0 0.079 1.7E-06 50.6 10.9 81 21-101 184-275 (489)
285 KOG0024 Sorbitol dehydrogenase 95.9 0.016 3.5E-07 51.2 5.6 95 19-127 165-270 (354)
286 PF11599 AviRa: RRNA methyltra 95.9 0.14 3.1E-06 42.7 10.7 118 9-127 38-211 (246)
287 PRK09424 pntA NAD(P) transhydr 95.8 0.068 1.5E-06 51.1 9.5 98 21-127 162-282 (509)
288 KOG1596 Fibrillarin and relate 95.6 0.055 1.2E-06 45.9 7.3 106 10-127 140-258 (317)
289 cd08283 FDH_like_1 Glutathione 95.4 0.13 2.9E-06 47.5 10.1 105 19-127 180-303 (386)
290 TIGR00027 mthyl_TIGR00027 meth 95.4 0.3 6.4E-06 42.7 11.6 122 6-129 65-196 (260)
291 COG3129 Predicted SAM-dependen 95.4 0.033 7E-07 47.0 5.1 76 23-99 78-162 (292)
292 KOG2198 tRNA cytosine-5-methyl 95.3 0.11 2.5E-06 46.8 8.8 120 19-141 151-305 (375)
293 PF00145 DNA_methylase: C-5 cy 95.3 0.063 1.4E-06 48.1 7.4 65 26-99 2-70 (335)
294 COG0275 Predicted S-adenosylme 95.2 0.17 3.7E-06 44.5 9.3 84 13-98 13-104 (314)
295 PRK11524 putative methyltransf 94.9 0.095 2.1E-06 46.4 7.2 46 21-67 206-252 (284)
296 PF01555 N6_N4_Mtase: DNA meth 94.7 0.085 1.8E-06 44.5 6.1 43 20-63 188-231 (231)
297 PRK13699 putative methylase; P 94.7 0.15 3.1E-06 43.6 7.5 47 21-68 161-208 (227)
298 PF01795 Methyltransf_5: MraW 94.6 0.082 1.8E-06 47.1 5.8 78 19-98 16-101 (310)
299 PF03492 Methyltransf_7: SAM d 94.6 0.61 1.3E-05 42.3 11.6 107 21-127 14-180 (334)
300 cd08281 liver_ADH_like1 Zinc-d 94.5 0.2 4.4E-06 45.9 8.5 93 19-127 187-287 (371)
301 TIGR03451 mycoS_dep_FDH mycoth 94.4 0.25 5.5E-06 45.0 8.9 96 19-127 172-273 (358)
302 PF07757 AdoMet_MTase: Predict 94.1 0.047 1E-06 40.3 2.7 32 23-55 58-89 (112)
303 TIGR01202 bchC 2-desacetyl-2-h 94.1 0.14 3E-06 45.7 6.4 83 22-127 143-228 (308)
304 PF05711 TylF: Macrocin-O-meth 94.0 0.67 1.5E-05 40.0 10.0 122 5-131 56-213 (248)
305 cd08230 glucose_DH Glucose deh 94.0 0.19 4E-06 45.8 7.1 91 21-127 170-266 (355)
306 cd08237 ribitol-5-phosphate_DH 93.9 0.33 7.2E-06 44.0 8.6 89 21-127 161-253 (341)
307 KOG2651 rRNA adenine N-6-methy 93.8 0.23 5E-06 45.0 7.0 50 13-62 143-193 (476)
308 KOG2078 tRNA modification enzy 93.8 0.045 9.7E-07 50.1 2.5 64 20-84 246-311 (495)
309 TIGR00561 pntA NAD(P) transhyd 93.7 0.21 4.7E-06 47.6 7.1 94 22-127 162-281 (511)
310 COG1568 Predicted methyltransf 93.6 0.37 7.9E-06 41.9 7.5 96 21-123 150-250 (354)
311 cd08239 THR_DH_like L-threonin 93.6 0.39 8.4E-06 43.3 8.4 96 19-127 159-259 (339)
312 cd00401 AdoHcyase S-adenosyl-L 93.4 0.59 1.3E-05 43.6 9.3 94 12-127 189-286 (413)
313 PF04072 LCM: Leucine carboxyl 93.4 0.3 6.5E-06 40.1 6.8 109 6-115 60-181 (183)
314 PRK10309 galactitol-1-phosphat 93.3 0.42 9E-06 43.3 8.2 97 19-127 156-257 (347)
315 PF03269 DUF268: Caenorhabditi 93.2 0.087 1.9E-06 41.9 3.0 103 24-141 2-116 (177)
316 TIGR03366 HpnZ_proposed putati 93.1 0.24 5.2E-06 43.5 6.1 93 21-127 118-215 (280)
317 COG2933 Predicted SAM-dependen 93.0 0.34 7.5E-06 41.8 6.5 73 19-99 207-279 (358)
318 PF05206 TRM13: Methyltransfer 92.7 0.57 1.2E-05 40.8 7.7 73 14-86 9-87 (259)
319 KOG3924 Putative protein methy 92.7 0.56 1.2E-05 42.8 7.7 106 18-127 187-305 (419)
320 KOG0022 Alcohol dehydrogenase, 92.7 0.29 6.3E-06 43.3 5.7 47 18-64 187-236 (375)
321 cd05188 MDR Medium chain reduc 92.4 0.46 9.9E-06 40.8 6.9 96 19-127 130-229 (271)
322 PLN02668 indole-3-acetate carb 92.4 0.92 2E-05 41.8 9.0 104 24-127 64-234 (386)
323 KOG1201 Hydroxysteroid 17-beta 92.3 0.81 1.7E-05 40.3 8.1 76 19-98 33-122 (300)
324 PRK11524 putative methyltransf 92.1 0.19 4.2E-06 44.4 4.2 54 73-127 8-77 (284)
325 KOG2912 Predicted DNA methylas 92.0 0.54 1.2E-05 41.7 6.6 72 28-99 107-187 (419)
326 COG0686 Ald Alanine dehydrogen 91.9 0.58 1.3E-05 41.5 6.7 95 24-127 168-265 (371)
327 COG1062 AdhC Zn-dependent alco 91.9 0.46 1E-05 42.6 6.2 47 18-64 180-229 (366)
328 TIGR00675 dcm DNA-methyltransf 91.8 0.26 5.6E-06 44.4 4.6 66 27-99 1-68 (315)
329 cd08254 hydroxyacyl_CoA_DH 6-h 91.4 1.8 3.9E-05 38.6 9.9 96 18-127 160-260 (338)
330 cd08232 idonate-5-DH L-idonate 91.3 1.4 3E-05 39.6 9.0 89 23-127 165-259 (339)
331 KOG0821 Predicted ribosomal RN 91.2 0.52 1.1E-05 39.6 5.4 66 17-84 44-110 (326)
332 PRK13699 putative methylase; P 90.6 0.29 6.2E-06 41.8 3.6 52 75-127 3-69 (227)
333 PF02636 Methyltransf_28: Puta 90.2 1.4 3.1E-05 38.1 7.7 70 24-98 19-103 (252)
334 COG0270 Dcm Site-specific DNA 90.1 0.52 1.1E-05 42.6 5.0 70 24-99 3-76 (328)
335 PF10354 DUF2431: Domain of un 90.1 1.5 3.2E-05 35.5 7.1 99 29-127 2-122 (166)
336 PF07279 DUF1442: Protein of u 89.9 5.5 0.00012 33.5 10.3 96 24-127 42-145 (218)
337 cd08285 NADP_ADH NADP(H)-depen 89.7 2.4 5.2E-05 38.4 9.1 93 19-127 162-263 (351)
338 COG3510 CmcI Cephalosporin hyd 89.5 3.1 6.6E-05 34.4 8.3 106 8-127 58-177 (237)
339 PRK01747 mnmC bifunctional tRN 89.3 1.6 3.5E-05 43.5 8.2 104 23-127 57-203 (662)
340 COG4301 Uncharacterized conser 89.3 10 0.00022 32.8 11.5 105 21-127 76-190 (321)
341 PF00107 ADH_zinc_N: Zinc-bind 89.2 0.8 1.7E-05 34.8 4.8 78 33-127 1-86 (130)
342 TIGR02822 adh_fam_2 zinc-bindi 88.7 4 8.7E-05 36.7 9.7 88 19-127 161-251 (329)
343 COG3315 O-Methyltransferase in 88.7 4.5 9.8E-05 36.0 9.8 120 5-127 75-206 (297)
344 PRK15001 SAM-dependent 23S rib 88.6 5.2 0.00011 36.9 10.4 92 26-127 47-139 (378)
345 PRK10458 DNA cytosine methylas 88.5 2.4 5.1E-05 40.3 8.2 73 24-99 88-178 (467)
346 cd08231 MDR_TM0436_like Hypoth 88.2 4.1 9E-05 37.0 9.6 94 21-127 175-277 (361)
347 PRK05854 short chain dehydroge 87.7 3.9 8.4E-05 36.6 8.9 76 22-98 12-101 (313)
348 PLN02740 Alcohol dehydrogenase 87.6 1.6 3.4E-05 40.2 6.5 45 19-63 194-241 (381)
349 TIGR02819 fdhA_non_GSH formald 87.6 4.5 9.7E-05 37.5 9.5 101 19-127 181-296 (393)
350 cd08265 Zn_ADH3 Alcohol dehydr 87.5 5.2 0.00011 36.8 9.9 96 19-127 199-304 (384)
351 cd08293 PTGR2 Prostaglandin re 87.5 2.9 6.2E-05 37.6 8.0 92 20-127 149-251 (345)
352 TIGR02818 adh_III_F_hyde S-(hy 87.5 1.8 3.9E-05 39.7 6.7 45 19-63 181-228 (368)
353 cd08233 butanediol_DH_like (2R 87.4 2.9 6.4E-05 37.8 8.1 96 19-127 168-269 (351)
354 PF02737 3HCDH_N: 3-hydroxyacy 87.2 3.7 8.1E-05 33.6 7.8 92 26-127 1-111 (180)
355 PF10237 N6-adenineMlase: Prob 87.1 13 0.00028 29.9 10.6 104 9-127 13-120 (162)
356 PLN03154 putative allyl alcoho 87.1 4.4 9.6E-05 36.8 9.0 95 19-127 154-255 (348)
357 TIGR02354 thiF_fam2 thiamine b 87.1 6.5 0.00014 32.8 9.3 33 23-55 20-54 (200)
358 cd08278 benzyl_alcohol_DH Benz 86.9 1.1 2.4E-05 41.0 5.0 93 19-127 182-282 (365)
359 cd05278 FDH_like Formaldehyde 86.8 5.9 0.00013 35.6 9.7 96 19-127 163-264 (347)
360 cd05285 sorbitol_DH Sorbitol d 86.7 2.6 5.6E-05 38.0 7.2 97 18-127 157-262 (343)
361 PRK12475 thiamine/molybdopteri 86.6 1.8 4E-05 39.3 6.1 76 22-97 22-123 (338)
362 cd08234 threonine_DH_like L-th 86.3 5.5 0.00012 35.5 9.2 94 18-127 154-254 (334)
363 cd01065 NAD_bind_Shikimate_DH 85.9 6 0.00013 31.0 8.3 82 10-98 5-89 (155)
364 cd08240 6_hydroxyhexanoate_dh_ 85.7 8.2 0.00018 34.8 10.1 91 21-127 173-271 (350)
365 PLN02586 probable cinnamyl alc 85.6 4.9 0.00011 36.7 8.5 90 21-127 181-275 (360)
366 TIGR03201 dearomat_had 6-hydro 85.5 4 8.6E-05 37.0 7.9 44 19-63 162-208 (349)
367 TIGR02356 adenyl_thiF thiazole 85.3 2.8 6E-05 35.1 6.2 34 22-55 19-54 (202)
368 COG1565 Uncharacterized conser 85.1 4 8.8E-05 37.1 7.4 47 21-67 75-131 (370)
369 PRK05786 fabG 3-ketoacyl-(acyl 84.9 14 0.0003 31.1 10.6 72 23-98 4-89 (238)
370 TIGR02825 B4_12hDH leukotriene 84.9 6.8 0.00015 35.0 9.0 96 17-127 132-234 (325)
371 PRK05476 S-adenosyl-L-homocyst 84.9 7.1 0.00015 36.7 9.2 92 13-127 200-296 (425)
372 COG0604 Qor NADPH:quinone redu 84.7 8.1 0.00018 34.9 9.4 95 18-127 137-238 (326)
373 PRK05562 precorrin-2 dehydroge 84.6 3.2 6.9E-05 35.3 6.2 86 1-97 1-92 (223)
374 cd05279 Zn_ADH1 Liver alcohol 84.3 6.6 0.00014 35.8 8.8 95 18-127 178-282 (365)
375 cd08263 Zn_ADH10 Alcohol dehyd 84.3 7.9 0.00017 35.2 9.4 93 19-127 183-284 (367)
376 PRK08644 thiamine biosynthesis 84.3 4.2 9E-05 34.3 6.9 75 23-97 27-124 (212)
377 PRK07688 thiamine/molybdopteri 84.0 2.8 6.1E-05 38.1 6.0 76 22-97 22-123 (339)
378 PF06460 NSP13: Coronavirus NS 83.9 4 8.7E-05 35.3 6.4 96 19-127 57-166 (299)
379 cd00757 ThiF_MoeB_HesA_family 83.7 3.4 7.5E-05 35.2 6.2 75 23-97 20-118 (228)
380 COG4627 Uncharacterized protei 83.6 0.15 3.3E-06 40.3 -2.0 43 84-127 41-83 (185)
381 TIGR00936 ahcY adenosylhomocys 83.5 10 0.00022 35.3 9.6 84 21-127 192-279 (406)
382 PF06859 Bin3: Bicoid-interact 83.4 0.56 1.2E-05 34.9 1.0 38 90-127 1-41 (110)
383 PF02254 TrkA_N: TrkA-N domain 83.2 8.1 0.00017 28.6 7.5 82 32-127 4-93 (116)
384 PRK07904 short chain dehydroge 83.1 8.1 0.00018 33.2 8.5 76 21-97 5-94 (253)
385 KOG1209 1-Acyl dihydroxyaceton 82.9 6 0.00013 33.4 6.9 67 23-98 6-89 (289)
386 PRK06701 short chain dehydroge 82.8 17 0.00036 32.0 10.5 75 21-98 43-132 (290)
387 PLN02494 adenosylhomocysteinas 82.5 6.3 0.00014 37.4 7.8 95 11-127 240-338 (477)
388 PRK08293 3-hydroxybutyryl-CoA 82.5 8.4 0.00018 34.0 8.4 94 25-127 4-117 (287)
389 PRK07066 3-hydroxybutyryl-CoA 82.5 9.6 0.00021 34.4 8.8 94 25-127 8-116 (321)
390 PLN02827 Alcohol dehydrogenase 82.3 4.2 9.1E-05 37.4 6.7 96 19-127 189-292 (378)
391 cd01492 Aos1_SUMO Ubiquitin ac 82.3 5.6 0.00012 33.1 6.8 74 23-97 20-117 (197)
392 PRK07063 short chain dehydroge 82.3 8.5 0.00018 33.0 8.3 76 22-98 5-94 (260)
393 cd08255 2-desacetyl-2-hydroxye 82.3 5.9 0.00013 34.3 7.3 92 19-127 93-187 (277)
394 cd08242 MDR_like Medium chain 82.2 9 0.00019 33.9 8.6 89 19-127 151-242 (319)
395 cd08286 FDH_like_ADH2 formalde 82.2 9.7 0.00021 34.2 8.9 95 19-127 162-263 (345)
396 PRK06035 3-hydroxyacyl-CoA deh 82.1 10 0.00023 33.4 8.9 93 25-127 4-118 (291)
397 cd08294 leukotriene_B4_DH_like 82.0 12 0.00027 33.1 9.5 92 18-127 138-238 (329)
398 KOG1205 Predicted dehydrogenas 81.9 7.1 0.00015 34.4 7.5 77 22-98 10-99 (282)
399 TIGR00518 alaDH alanine dehydr 81.8 2.9 6.3E-05 38.5 5.4 96 23-127 166-264 (370)
400 cd08301 alcohol_DH_plants Plan 81.8 4.4 9.6E-05 37.0 6.6 45 19-63 183-230 (369)
401 PRK08306 dipicolinate synthase 81.7 13 0.00028 33.1 9.3 86 22-127 150-238 (296)
402 PRK05708 2-dehydropantoate 2-r 81.4 7.5 0.00016 34.7 7.8 92 25-127 3-101 (305)
403 cd08300 alcohol_DH_class_III c 81.2 5.1 0.00011 36.6 6.8 96 19-127 182-285 (368)
404 PRK06249 2-dehydropantoate 2-r 81.2 6 0.00013 35.4 7.1 90 24-127 5-103 (313)
405 cd08236 sugar_DH NAD(P)-depend 81.1 3.4 7.4E-05 37.1 5.6 93 19-127 155-255 (343)
406 PF01488 Shikimate_DH: Shikima 80.7 3.2 6.9E-05 32.2 4.5 72 21-98 9-83 (135)
407 KOG2352 Predicted spermine/spe 80.5 1.4 3E-05 41.4 2.8 104 23-127 295-413 (482)
408 cd08277 liver_alcohol_DH_like 80.2 5.5 0.00012 36.3 6.7 96 19-127 180-283 (365)
409 cd01483 E1_enzyme_family Super 79.8 9.1 0.0002 29.7 6.9 72 26-97 1-96 (143)
410 PRK05597 molybdopterin biosynt 79.8 6.9 0.00015 35.8 7.0 75 22-97 26-125 (355)
411 PF00106 adh_short: short chai 79.4 9.9 0.00022 29.9 7.2 72 25-98 1-88 (167)
412 PF11899 DUF3419: Protein of u 79.3 7.1 0.00015 36.1 6.9 40 18-58 30-70 (380)
413 COG1748 LYS9 Saccharopine dehy 79.2 5.5 0.00012 36.8 6.1 69 25-99 2-77 (389)
414 cd08295 double_bond_reductase_ 79.1 19 0.00042 32.2 9.8 96 18-127 146-248 (338)
415 PRK07417 arogenate dehydrogena 79.1 10 0.00022 33.3 7.8 84 26-127 2-88 (279)
416 cd08279 Zn_ADH_class_III Class 78.8 19 0.00041 32.7 9.7 93 19-127 178-279 (363)
417 PRK09260 3-hydroxybutyryl-CoA 78.3 11 0.00024 33.3 7.7 94 25-127 2-114 (288)
418 COG1255 Uncharacterized protei 78.2 20 0.00044 27.0 7.6 60 25-96 15-76 (129)
419 PRK06197 short chain dehydroge 78.2 15 0.00033 32.5 8.7 76 22-98 14-103 (306)
420 PLN02514 cinnamyl-alcohol dehy 78.2 12 0.00026 34.0 8.2 92 21-127 178-272 (357)
421 cd05284 arabinose_DH_like D-ar 78.1 6.5 0.00014 35.2 6.4 92 20-127 164-263 (340)
422 PF05050 Methyltransf_21: Meth 78.1 5.2 0.00011 31.5 5.2 52 29-80 1-60 (167)
423 PRK05867 short chain dehydroge 78.1 12 0.00027 31.8 7.9 74 22-98 7-94 (253)
424 cd08296 CAD_like Cinnamyl alco 78.0 13 0.00028 33.3 8.3 94 20-127 160-256 (333)
425 PLN03209 translocon at the inn 77.9 9.5 0.00021 37.2 7.6 79 18-98 74-167 (576)
426 PRK07530 3-hydroxybutyryl-CoA 77.8 26 0.00055 30.9 10.0 93 25-127 5-116 (292)
427 PRK08339 short chain dehydroge 77.5 14 0.0003 31.9 8.1 75 22-98 6-93 (263)
428 COG0863 DNA modification methy 77.4 10 0.00022 33.4 7.4 48 20-68 219-267 (302)
429 PRK06914 short chain dehydroge 77.4 13 0.00029 32.1 8.0 74 24-98 3-89 (280)
430 cd01487 E1_ThiF_like E1_ThiF_l 77.3 9.2 0.0002 31.1 6.4 72 26-97 1-95 (174)
431 PRK08223 hypothetical protein; 77.3 8.8 0.00019 34.0 6.7 75 22-96 25-123 (287)
432 cd08284 FDH_like_2 Glutathione 77.2 16 0.00036 32.6 8.8 92 19-127 163-263 (344)
433 PRK05808 3-hydroxybutyryl-CoA 76.8 28 0.00061 30.5 9.9 94 26-129 5-117 (282)
434 PLN02178 cinnamyl-alcohol dehy 76.6 18 0.00039 33.3 8.9 88 22-127 177-270 (375)
435 KOG0725 Reductases with broad 76.6 24 0.00051 30.9 9.2 77 21-98 5-97 (270)
436 PRK07502 cyclohexadienyl dehyd 76.4 14 0.0003 33.0 7.9 87 25-127 7-97 (307)
437 cd01488 Uba3_RUB Ubiquitin act 76.4 10 0.00022 33.7 6.8 71 26-97 1-95 (291)
438 cd08238 sorbose_phosphate_red 76.4 5.8 0.00013 36.9 5.7 46 19-64 171-222 (410)
439 PRK08324 short chain dehydroge 76.3 22 0.00047 35.7 10.0 72 23-98 421-506 (681)
440 PRK07062 short chain dehydroge 76.3 17 0.00036 31.3 8.2 76 22-98 6-95 (265)
441 PRK12549 shikimate 5-dehydroge 76.1 21 0.00047 31.5 8.9 84 10-97 113-199 (284)
442 PRK12548 shikimate 5-dehydroge 76.0 15 0.00032 32.6 7.8 86 10-98 112-207 (289)
443 PRK08762 molybdopterin biosynt 75.9 7.5 0.00016 35.9 6.2 33 23-55 134-168 (376)
444 PRK06172 short chain dehydroge 75.9 16 0.00035 31.0 8.0 74 22-98 5-92 (253)
445 PF02558 ApbA: Ketopantoate re 75.8 9.9 0.00021 29.7 6.1 86 27-127 1-98 (151)
446 cd08261 Zn_ADH7 Alcohol dehydr 75.5 19 0.00041 32.2 8.7 95 19-127 155-255 (337)
447 PRK06124 gluconate 5-dehydroge 75.4 17 0.00037 31.0 8.0 74 22-98 9-96 (256)
448 PRK07792 fabG 3-ketoacyl-(acyl 75.4 19 0.00042 31.9 8.6 75 21-98 9-97 (306)
449 PRK07677 short chain dehydroge 75.4 17 0.00036 31.0 7.9 72 24-98 1-86 (252)
450 PF03712 Cu2_monoox_C: Copper 75.3 3 6.6E-05 33.3 3.0 27 249-275 78-104 (156)
451 COG1893 ApbA Ketopantoate redu 75.1 11 0.00024 33.7 6.9 90 25-127 1-98 (307)
452 PRK09242 tropinone reductase; 75.1 19 0.00041 30.7 8.2 75 23-98 8-96 (257)
453 TIGR00853 pts-lac PTS system, 74.9 15 0.00032 26.6 6.3 55 25-98 4-58 (95)
454 PRK05876 short chain dehydroge 74.9 18 0.0004 31.5 8.2 74 22-98 4-91 (275)
455 PRK05690 molybdopterin biosynt 74.7 11 0.00023 32.6 6.4 75 23-97 31-129 (245)
456 PRK08945 putative oxoacyl-(acy 74.4 16 0.00034 31.0 7.5 75 21-98 9-100 (247)
457 PRK08340 glucose-1-dehydrogena 74.1 16 0.00035 31.3 7.6 69 26-98 2-84 (259)
458 KOG1208 Dehydrogenases with di 74.1 26 0.00056 31.5 8.9 76 22-98 33-122 (314)
459 PRK07340 ornithine cyclodeamin 74.0 26 0.00056 31.3 9.0 86 6-98 107-196 (304)
460 PRK11730 fadB multifunctional 73.9 18 0.00039 36.5 8.7 96 25-130 314-428 (715)
461 PRK06128 oxidoreductase; Provi 73.9 49 0.0011 29.1 10.8 73 23-98 54-142 (300)
462 TIGR02355 moeB molybdopterin s 73.9 21 0.00046 30.7 8.1 75 23-97 23-121 (240)
463 PRK09291 short chain dehydroge 73.9 19 0.00042 30.6 8.0 72 24-98 2-81 (257)
464 PRK06130 3-hydroxybutyryl-CoA 73.9 24 0.00053 31.4 8.8 94 25-127 5-112 (311)
465 cd00755 YgdL_like Family of ac 73.8 14 0.00031 31.5 7.0 75 23-97 10-109 (231)
466 PRK07819 3-hydroxybutyryl-CoA 73.8 19 0.00041 31.8 8.0 93 25-127 6-118 (286)
467 KOG1098 Putative SAM-dependent 73.8 6.2 0.00014 38.4 5.0 38 19-56 40-79 (780)
468 PF11899 DUF3419: Protein of u 73.3 6 0.00013 36.6 4.8 57 68-127 272-331 (380)
469 PRK07411 hypothetical protein; 73.2 11 0.00023 35.1 6.4 75 23-97 37-135 (390)
470 KOG4174 Uncharacterized conser 73.2 15 0.00033 31.7 6.7 105 22-129 55-189 (282)
471 cd08245 CAD Cinnamyl alcohol d 72.9 33 0.00071 30.4 9.5 92 19-127 158-253 (330)
472 cd08256 Zn_ADH2 Alcohol dehydr 72.9 26 0.00056 31.6 8.9 93 19-127 170-271 (350)
473 PRK07035 short chain dehydroge 72.8 23 0.0005 30.0 8.2 74 22-98 6-93 (252)
474 PRK06200 2,3-dihydroxy-2,3-dih 72.7 18 0.0004 31.0 7.6 71 22-98 4-88 (263)
475 PRK06522 2-dehydropantoate 2-r 72.3 30 0.00066 30.4 9.1 90 26-127 2-97 (304)
476 PF03686 UPF0146: Uncharacteri 72.2 7.4 0.00016 29.8 4.2 73 10-97 3-77 (127)
477 cd05289 MDR_like_2 alcohol deh 72.1 49 0.0011 28.6 10.3 93 19-127 140-235 (309)
478 PRK07806 short chain dehydroge 72.0 59 0.0013 27.3 11.4 74 22-98 4-92 (248)
479 PRK06194 hypothetical protein; 71.8 22 0.00048 30.9 8.0 73 23-98 5-91 (287)
480 PF02826 2-Hacid_dh_C: D-isome 71.7 5.7 0.00012 32.3 3.9 89 21-127 33-124 (178)
481 TIGR02441 fa_ox_alpha_mit fatt 71.7 16 0.00034 37.0 7.7 95 25-129 336-449 (737)
482 PRK05225 ketol-acid reductoiso 71.6 6.7 0.00014 37.0 4.6 91 21-130 33-131 (487)
483 PRK08303 short chain dehydroge 71.6 26 0.00056 31.2 8.4 74 22-98 6-103 (305)
484 PRK07890 short chain dehydroge 71.5 26 0.00057 29.7 8.3 74 22-98 3-90 (258)
485 PRK08328 hypothetical protein; 71.4 6.3 0.00014 33.7 4.2 53 1-54 1-59 (231)
486 cd05281 TDH Threonine dehydrog 71.2 11 0.00023 33.9 6.0 93 21-127 161-259 (341)
487 KOG2811 Uncharacterized conser 71.1 7.4 0.00016 35.4 4.6 61 24-86 183-248 (420)
488 cd05564 PTS_IIB_chitobiose_lic 71.1 12 0.00025 27.2 5.0 51 30-98 4-54 (96)
489 COG4017 Uncharacterized protei 71.0 12 0.00026 31.0 5.4 65 19-96 40-105 (254)
490 PRK07831 short chain dehydroge 71.0 29 0.00062 29.7 8.4 76 21-98 14-105 (262)
491 PRK08862 short chain dehydroge 70.8 23 0.00049 29.9 7.5 73 23-98 4-91 (227)
492 PRK07453 protochlorophyllide o 70.7 25 0.00053 31.4 8.2 73 23-98 5-91 (322)
493 cd08298 CAD2 Cinnamyl alcohol 70.6 48 0.001 29.3 10.1 88 19-127 163-253 (329)
494 TIGR00692 tdh L-threonine 3-de 70.5 35 0.00075 30.6 9.2 94 21-127 159-258 (340)
495 PRK14852 hypothetical protein; 70.5 13 0.00028 38.5 6.8 75 23-97 331-429 (989)
496 PRK06125 short chain dehydroge 70.5 26 0.00056 29.9 8.0 74 23-98 6-89 (259)
497 PRK07478 short chain dehydroge 70.4 26 0.00057 29.7 8.0 73 23-98 5-91 (254)
498 PRK05866 short chain dehydroge 70.3 25 0.00055 30.9 8.0 73 23-98 39-125 (293)
499 PRK08589 short chain dehydroge 70.2 27 0.00058 30.2 8.1 74 22-98 4-90 (272)
500 cd08287 FDH_like_ADH3 formalde 70.2 8.7 0.00019 34.5 5.2 93 19-127 164-265 (345)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-69 Score=464.55 Aligned_cols=306 Identities=63% Similarity=1.045 Sum_probs=299.4
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
||+|.+|+++|+++|.++.++.++++|||+|||||++++++|++|+++|+|+|.|++++.|++.+..|++.+.|+++++.
T Consensus 38 ML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gk 117 (346)
T KOG1499|consen 38 MLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGK 117 (346)
T ss_pred HHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCch
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 160 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 160 (306)
++++.+|.+++|+|+||||||+++.|.++..++.++.++|+|||.++|+.++++++++++..+....+.||.++||||++
T Consensus 118 vEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms 197 (346)
T KOG1499|consen 118 VEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMS 197 (346)
T ss_pred eEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchhhhhhcCccccccccchh
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecCCC--ceeEEec
Q 021852 161 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCH--KLMGFST 238 (306)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~--~~~~lst 238 (306)
++.....++|+++.+++.+++++|+.+.++|+.++..+++.++.+|++.+.+++.+|||++|||+.|..+. ..+.+||
T Consensus 198 ~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST 277 (346)
T KOG1499|consen 198 CIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFST 277 (346)
T ss_pred hhhhhhhcccceeccChhHhcccceeeEEeeeeeeeccceeeccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977 6899999
Q ss_pred CCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcce-eeeeeceeEEEeC
Q 021852 239 GPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR-HSAISRIQYYKMR 306 (306)
Q Consensus 239 ~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 306 (306)
+|.++.|||+|+||+|++|+.|++|+.|.+++.+++|+.++|++++.++|+.+|+ ...++.+..|+||
T Consensus 278 ~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~~~~~~~~y~~~ 346 (346)
T KOG1499|consen 278 SPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLNFKGQGLCSFSESDSYPMR 346 (346)
T ss_pred CCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEecCCccccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999 8888999999997
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=1e-49 Score=340.28 Aligned_cols=288 Identities=40% Similarity=0.654 Sum_probs=262.5
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|+.|.+|+..|.+||..+...++++.|||+|||+|++++++|++|+++|||+|.|+|+++|++.++.|.+.++|++|.+.
T Consensus 155 MmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GK 234 (517)
T KOG1500|consen 155 MMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGK 234 (517)
T ss_pred HHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccc---hhcccc--ccC
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD---KIEFWN--NVY 155 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~---~~~~w~--~~~ 155 (306)
++++.+| +++|+|++|+||+.+.+|.+++..+.+. ++|+|.|.++|....++++|+.++.+.-+ +.+||. +.|
T Consensus 235 iEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fy 312 (517)
T KOG1500|consen 235 IEDIELP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFY 312 (517)
T ss_pred cccccCc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccc
Confidence 9999998 9999999999999999999999999988 99999999999999999999999876643 456886 579
Q ss_pred CCCchhhhhh----hcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCC-ceeeeEEEEEeecceEEEEEEEEEEEecCC
Q 021852 156 GFDMSCIKKQ----AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-SFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230 (306)
Q Consensus 156 g~~~~~~~~~----~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~ 230 (306)
|.|++.+... .+.+|.++.++++.++..+. ...+||.....+++ ....+++|.+...|.+||+++|||+.|++.
T Consensus 313 GVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~sv-~h~~dF~~~kEedlh~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS 391 (517)
T KOG1500|consen 313 GVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKSV-FHVIDFLNMKEEDLHEIDIPLKFHALQCGRIHGLAFWFDVLFDGS 391 (517)
T ss_pred cccchhhhhhhhhhhhccccccccccceeeccch-HhhhhhhhcccchheeecccceehhhhhcceeeeeeEEEEEeccc
Confidence 9999887644 35679999999877766655 57889999988888 456788999999999999999999999986
Q ss_pred CceeEEecCCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEc
Q 021852 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 291 (306)
Q Consensus 231 ~~~~~lst~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (306)
.-.+.+||+|..+.+||.|....|+.||.|++|++|++++.+-.++.+..+++|.++.+..
T Consensus 392 ~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~~~QSY~i~i~l~~~~~ 452 (517)
T KOG1500|consen 392 TVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIANSRQSYDITITLSAKMT 452 (517)
T ss_pred eEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEEEccccceeEEEEEEeeee
Confidence 5567899999999999999999999999999999999999999999998888887766554
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=2.9e-47 Score=351.62 Aligned_cols=268 Identities=33% Similarity=0.475 Sum_probs=217.0
Q ss_pred CCChHHHHHHHHHHHhcccCC--------CCCEEEEEcCCCcHHHHHHHHcC-----CCEEEEEech-HHHHHHHHHHHH
Q 021852 2 LKDVVRTKSYQNVIYQNKFLF--------KDKVVLDVGAGTGILSLFCAKAG-----AAHVYAVECS-QMANMAKQIVEA 67 (306)
Q Consensus 2 l~D~~R~~~~~~ai~~~~~~~--------~~~~VLDlG~G~G~l~~~~a~~g-----~~~v~~iD~s-~~~~~a~~~~~~ 67 (306)
-+|.+|++.|++||.++.... ++++|||+|||+|.|++++++++ +.+|||+|.+ .+...+++.+++
T Consensus 157 E~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~ 236 (448)
T PF05185_consen 157 EKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA 236 (448)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh
Confidence 489999999999997643221 36799999999999999998875 6799999999 455556677799
Q ss_pred cCCCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccch
Q 021852 68 NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDK 147 (306)
Q Consensus 68 ~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~ 147 (306)
|++.++|+++++|++++.+| +++|+||||+||+++.+|.. +..++++.|+|||||++||+.+++|++|+.++.++.+.
T Consensus 237 n~w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~-pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~ 314 (448)
T PF05185_consen 237 NGWGDKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNELS-PECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEV 314 (448)
T ss_dssp TTTTTTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSH-HHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHH
T ss_pred cCCCCeEEEEeCcccCCCCC-CceeEEEEeccCCccccccC-HHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHH
Confidence 99999999999999999887 79999999999999988844 56789999999999999999999999999999887765
Q ss_pred hccccccCCCCchhhhhhhcCCceEEeeCCCCccCCC-eEEEEEEcCCCC---CCCCceeeeEEEEEeecceEEEEEEEE
Q 021852 148 IEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC-QLLKTMDISKMG---PGDASFTAPFKLVAQRNDYIHALVAYF 223 (306)
Q Consensus 148 ~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p-~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~~wf 223 (306)
...|. ...++.|++..+.+...++++ ..+++|++.+.. .++..+...++|.+.++|.+|||++||
T Consensus 315 ~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwF 383 (448)
T PF05185_consen 315 RNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWF 383 (448)
T ss_dssp HHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEE
T ss_pred Hhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEE
Confidence 44332 344677888888888889999 999999998766 356677889999999999999999999
Q ss_pred EEEecCCCceeEEecCCCC----CCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEE
Q 021852 224 DVTFTKCHKLMGFSTGPKS----RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKY 288 (306)
Q Consensus 224 ~~~l~~~~~~~~lst~p~~----~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 288 (306)
++.|++ ++.|||+|.. +.+||+|++|||++|+.|++||+|+++++++.+ .+-+.+++.+
T Consensus 384 d~~Ly~---~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~---~~~vWYEW~v 446 (448)
T PF05185_consen 384 DAVLYG---DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTD---DRKVWYEWSV 446 (448)
T ss_dssp EEEEEC---SEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECC---STCEEEEEEE
T ss_pred EEEeeC---CeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcC---CCcEEEEEEE
Confidence 999998 8999999987 578999999999999999999999999999865 4457787754
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-33 Score=253.05 Aligned_cols=285 Identities=24% Similarity=0.303 Sum_probs=225.8
Q ss_pred CChHHHHHHHHHHHhcccCC-----C--CCEEEEEcCCCcHHHHHHHHc-----CCCEEEEEech-HHHHHHHHHHHHcC
Q 021852 3 KDVVRTKSYQNVIYQNKFLF-----K--DKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECS-QMANMAKQIVEANG 69 (306)
Q Consensus 3 ~D~~R~~~~~~ai~~~~~~~-----~--~~~VLDlG~G~G~l~~~~a~~-----g~~~v~~iD~s-~~~~~a~~~~~~~~ 69 (306)
+|.+++..|++||.++.... . -.+|+-+|+|.|.+.....++ ..-++|++|.+ .++...+ +.+...
T Consensus 340 kD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~-~~n~~~ 418 (649)
T KOG0822|consen 340 KDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ-NRNFEC 418 (649)
T ss_pred ccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh-hhchhh
Confidence 68999999999998653322 1 347899999999886555431 12379999988 4444443 355667
Q ss_pred CCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhc
Q 021852 70 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 149 (306)
Q Consensus 70 ~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~ 149 (306)
|.++|+++.+|++++..|.++.|++|||++|+|..+|... ..++.+.++|||+|+.||+..+.|+.|+.++.++++...
T Consensus 419 W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSP-ECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a 497 (649)
T KOG0822|consen 419 WDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSP-ECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKA 497 (649)
T ss_pred hcCeeEEEeccccccCCchhhccchHHHhhccccCccCCH-HHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHh
Confidence 8889999999999998555899999999999999888664 588888999999999999999999999999888765322
Q ss_pred cccccCCCCchhhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCC-CCCCceeeeEEEEEeecceEEEEEEEEEEEec
Q 021852 150 FWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMG-PGDASFTAPFKLVAQRNDYIHALVAYFDVTFT 228 (306)
Q Consensus 150 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~ 228 (306)
. .+ .-.++.|++..+.....|++|+.+|+|.+.+.. .-+..+....+|++.++|.+|||++||++.|+
T Consensus 498 ~-~~----------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~LY 566 (649)
T KOG0822|consen 498 T-ND----------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAVLY 566 (649)
T ss_pred c-CC----------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhhhhhh
Confidence 1 00 124567889998888899999999999998763 22345677889999999999999999999999
Q ss_pred CCCceeEEecCCCCCC---CCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEE-----cceeeee--e
Q 021852 229 KCHKLMGFSTGPKSRA---THWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL-----QGRHSAI--S 298 (306)
Q Consensus 229 ~~~~~~~lst~p~~~~---~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~ 298 (306)
+ +|.||+.|...+ .+|++++||+.+|+.|.+|++|++++|++.+ ..-+.+++..+- .-...++ .
T Consensus 567 k---dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d---~~kVWYEW~v~~~~~l~~~~~s~iHN~ 640 (649)
T KOG0822|consen 567 K---DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVD---STKVWYEWSVESFIYLMKPSSSEIHNP 640 (649)
T ss_pred h---eeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeC---CceeEEEEEeeeeecccCCCcccccCC
Confidence 9 999999998654 3999999999999999999999999999864 344777765542 2222233 6
Q ss_pred ceeEEEeC
Q 021852 299 RIQYYKMR 306 (306)
Q Consensus 299 ~~~~~~~~ 306 (306)
++++|.||
T Consensus 641 ~Grsy~~~ 648 (649)
T KOG0822|consen 641 NGRSYSMR 648 (649)
T ss_pred CCceeecC
Confidence 77888886
No 5
>PTZ00357 methyltransferase; Provisional
Probab=99.96 E-value=2.5e-27 Score=219.15 Aligned_cols=285 Identities=18% Similarity=0.208 Sum_probs=204.7
Q ss_pred CChHHHHHHHHHHHhcccC---------------------------------CCCCEEEEEcCCCcHHHHHH---HH-cC
Q 021852 3 KDVVRTKSYQNVIYQNKFL---------------------------------FKDKVVLDVGAGTGILSLFC---AK-AG 45 (306)
Q Consensus 3 ~D~~R~~~~~~ai~~~~~~---------------------------------~~~~~VLDlG~G~G~l~~~~---a~-~g 45 (306)
+|.++++.|.+||.++... ....+|+-+|+|.|.|...+ ++ .|
T Consensus 647 KDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~g 726 (1072)
T PTZ00357 647 RDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALG 726 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcC
Confidence 6899999999999865411 01136999999999885443 33 34
Q ss_pred CC-EEEEEech-HHHHHHHHH-HHHcCC-------CCeEEEEEceeeeecCCC-----------ceeeEEEEcccccccC
Q 021852 46 AA-HVYAVECS-QMANMAKQI-VEANGF-------SNVITVLKGKIEEIELPV-----------TKVDIIISEWMGYFLL 104 (306)
Q Consensus 46 ~~-~v~~iD~s-~~~~~a~~~-~~~~~~-------~~~v~~~~~d~~~~~~~~-----------~~~D~iv~~~~~~~~~ 104 (306)
.+ +|+|||.+ +.+.....+ .....| .++|++|..|++++..+. +++|+||||++|+|..
T Consensus 727 vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGD 806 (1072)
T PTZ00357 727 VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGD 806 (1072)
T ss_pred CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccccc
Confidence 33 89999988 644444333 233456 346999999999986431 3799999999999998
Q ss_pred CcchHHHHHHHHhhcccC----Ce-------EEEecCceEEEEEeeccccccchhccccccCCCCch-----hhhhhhcC
Q 021852 105 FENMLNTVLYARDKWLVD----DG-------IVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS-----CIKKQAMM 168 (306)
Q Consensus 105 ~~~~~~~~l~~~~~~L~p----~G-------~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~-----~~~~~~~~ 168 (306)
+|... ..|+.+.++||+ +| +.||+.++.|+.|+.++.+++..... ...|+... ......++
T Consensus 807 NELSP-ECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~--~~~gltvP~p~c~~~haa~fe 883 (1072)
T PTZ00357 807 NELSP-ECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA--AVKGLTVPPPGCHDHHAALNH 883 (1072)
T ss_pred ccCCH-HHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh--hhcccccCCccccccchhhcc
Confidence 88664 477777888875 55 59999999999999999887653211 01111110 00112345
Q ss_pred CceEEeeCCCCccCCCeEEEEEEcCCCCCC-----------------CCceeeeEEEEEeecceEEEEEEEEEEEecCCC
Q 021852 169 EPLVDTVDQNQIVTNCQLLKTMDISKMGPG-----------------DASFTAPFKLVAQRNDYIHALVAYFDVTFTKCH 231 (306)
Q Consensus 169 ~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~ 231 (306)
.+++..+.....|+.|+++|+|.+.+.... +..+.+.++|++..++.+|||++||++.|++..
T Consensus 884 t~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvLYkDV 963 (1072)
T PTZ00357 884 TLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLYQSA 963 (1072)
T ss_pred cceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEeecCC
Confidence 678888887778899999999999764421 225678899999999999999999999999821
Q ss_pred --ceeEEecCCCCCCC---CceeEEEecC---CeeeccCCC---------EEEEEEEEeeCCCCCeeeEEEEEEEEc
Q 021852 232 --KLMGFSTGPKSRAT---HWKQTVLYLE---DVLTICEGE---------AISGSLTVAPNKKNPRDVDIMLKYSLQ 291 (306)
Q Consensus 232 --~~~~lst~p~~~~~---~W~q~~~~l~---~p~~v~~g~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (306)
..+.|||.|...+. +|++.+|||+ ++..++.|| .|.+++.++.+-...| +.++++.-.+
T Consensus 964 t~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~r-VwYew~v~~~ 1039 (1072)
T PTZ00357 964 TAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQR-VWYEWSVTYG 1039 (1072)
T ss_pred CccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccce-EEEEEEEeec
Confidence 12789999976543 9999999999 667777887 7888888776655555 5666655444
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.95 E-value=4e-28 Score=214.30 Aligned_cols=250 Identities=23% Similarity=0.334 Sum_probs=193.2
Q ss_pred CCCChHHHHHHHHHHHhcccCC------CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCe
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLF------KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNV 73 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~------~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~ 73 (306)
||+|..||.+|+.+|++..... ....|||+|+|||+++++|+++|+..|+|+|.= +|.+.|++...+||++++
T Consensus 38 Ml~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~Sdk 117 (636)
T KOG1501|consen 38 MLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDK 117 (636)
T ss_pred HhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccc
Confidence 9999999999999998643322 223799999999999999999999999999976 999999999999999999
Q ss_pred EEEEEceeeeecCC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhcccc
Q 021852 74 ITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWN 152 (306)
Q Consensus 74 v~~~~~d~~~~~~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~ 152 (306)
|++|+...+++... ..+.|+++.+.++.-+.+|+.++.+-++..+++++|...+|.++++|++++++..+.. |.
T Consensus 118 I~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~-----~n 192 (636)
T KOG1501|consen 118 INVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN-----LN 192 (636)
T ss_pred eeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh-----hh
Confidence 99999999998743 4579999999998889999999999999999999999999999999999999976543 22
Q ss_pred ccCCCCchhhhhhhcCC---------------ceEEeeC-CCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceE
Q 021852 153 NVYGFDMSCIKKQAMME---------------PLVDTVD-QNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYI 216 (306)
Q Consensus 153 ~~~g~~~~~~~~~~~~~---------------~~~~~~~-~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~ 216 (306)
+........-....... .+.+..+ ..++|+++..+|.+||+............+...+..+|++
T Consensus 193 dl~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~Sg~~ 272 (636)
T KOG1501|consen 193 DLRNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHSGPL 272 (636)
T ss_pred ccccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccccch
Confidence 21111110000000000 0111111 3467999999999999964433322223445567889999
Q ss_pred EEEEEEEEEEecCCCceeEEecCCCCCC---------CCceeEEEecCC
Q 021852 217 HALVAYFDVTFTKCHKLMGFSTGPKSRA---------THWKQTVLYLED 256 (306)
Q Consensus 217 ~g~~~wf~~~l~~~~~~~~lst~p~~~~---------~~W~q~~~~l~~ 256 (306)
..+..||+.+++. .+...+..+|.+.. .||.|+++++++
T Consensus 273 ~~~l~wwdi~mD~-~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 273 RSNLLWWDISMDQ-FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred hheeeeeeeeecc-CcceEEEecceecCCChHHHHHHHHHHHhcCCChh
Confidence 9999999999995 55677888887532 499999988873
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=1.6e-18 Score=146.95 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=101.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+.|++++.......+|.+|||+|||||.+++.+++ .|..+|+++|+| +|++.|++++...+..+ ++++++|++++++
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf 115 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC
Confidence 45666666555566899999999999999999999 566799999999 99999999999888866 9999999999999
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++||++.+. +.+.+-.+.+.+|.++.|+|||||+++
T Consensus 116 ~D~sFD~vt~~---fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 116 PDNSFDAVTIS---FGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCCccCEEEee---ehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 99999999974 667777899999999999999999876
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.74 E-value=2.9e-17 Score=124.80 Aligned_cols=104 Identities=29% Similarity=0.362 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCCCceeeEEEEcc-
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEW- 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~D~iv~~~- 98 (306)
|+.+|||+|||+|.+++.+++ .+..+|+|+|+| +|++.|++++.+.+..++++++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 678999999999999999999 456699999999 89999999998888888999999999 334333 6899999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.+........+++.+.+.|+|||+++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEE
Confidence 22323333567788999999999999998
No 9
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.73 E-value=3.8e-17 Score=130.00 Aligned_cols=131 Identities=26% Similarity=0.381 Sum_probs=114.8
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 2 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 2 l~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|.|..|...|..+|.+... ..+.|+|+|+|.+++.+|++ +.+|+|+|.+ ..++.|.+++.-+|. ++++++.+|
T Consensus 15 L~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gD 88 (252)
T COG4076 15 LRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGD 88 (252)
T ss_pred hhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecc
Confidence 7899999999999986533 78999999999999999998 8899999999 789999999988888 579999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
+.+..+ +.+|+|+||+++..+..|...+ ++.++..+|+.++.+||+....-+.|+..+
T Consensus 89 A~~y~f--e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 89 ARDYDF--ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred cccccc--cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 999876 6799999999999888887776 566666799999999999887777777643
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.70 E-value=5.8e-17 Score=138.60 Aligned_cols=113 Identities=22% Similarity=0.280 Sum_probs=81.8
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
|++.+.+.....+|.+|||+|||||.++..+++. + ..+|+++|+| +|++.|+++++..+.. +|+++++|+++++++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFP 113 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCC
Confidence 4444444445678899999999999999999884 3 3599999999 9999999999988875 799999999999999
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++||+|++. +.+.+-.+.+..++++.|+|||||.++
T Consensus 114 d~sfD~v~~~---fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 114 DNSFDAVTCS---FGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp TT-EEEEEEE---S-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred CCceeEEEHH---hhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 9999999985 344455678899999999999999987
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.65 E-value=3.5e-16 Score=130.54 Aligned_cols=103 Identities=26% Similarity=0.296 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+|.+|||+|||-|.++..+|+.|+ .|+|+|.+ ++++.|+..+.++++ .+++....++++....++||+|+|.-|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEV- 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEV- 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhH-
Confidence 5899999999999999999999995 99999999 899999999999998 488888888888755689999999544
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
+.+-.+...++.++.+++||||.++.++
T Consensus 134 --lEHv~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 134 --LEHVPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred --HHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence 3344677889999999999999998443
No 12
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=2.3e-15 Score=124.42 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=89.3
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.+.+++.....+.++.+|||+|||+|.+++.+++ .+..+|+++|.+ +|++.|+++++.+++++ ++++++|+.++..
T Consensus 32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~- 109 (187)
T PRK00107 32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ- 109 (187)
T ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-
Confidence 3333333333445689999999999999998887 456699999999 89999999999999865 9999999988765
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|+++.+ ..++.++..+.++|+|||.++
T Consensus 110 ~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv 142 (187)
T PRK00107 110 EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFL 142 (187)
T ss_pred CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEE
Confidence 579999999642 356788899999999999987
No 13
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.64 E-value=1.4e-15 Score=133.64 Aligned_cols=108 Identities=28% Similarity=0.395 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
++.-.++|.+. ..++++|||+|||||+|++.+++.|+++|+|+|++ ..++.|+++++.|++.+++.+. ...+ .
T Consensus 148 T~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~--~ 221 (295)
T PF06325_consen 148 TRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED--L 221 (295)
T ss_dssp HHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC--T
T ss_pred HHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc--c
Confidence 34455666643 67889999999999999999999999999999999 8899999999999999877663 2222 2
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+||+|++|.+. ..+..+...+.++|+|||.+|
T Consensus 222 ~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lI 256 (295)
T PF06325_consen 222 VEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLI 256 (295)
T ss_dssp CCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEE
T ss_pred ccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEE
Confidence 34899999999742 355667888889999999998
No 14
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.63 E-value=5.3e-15 Score=129.13 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=90.9
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHH--HcCCCCeEEEEEceeeee
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVE--ANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~--~~~~~~~v~~~~~d~~~~ 84 (306)
.|++.+.+...+.++.+|||+|||+|.++..+++. + ..+|+|+|+| +|++.|+++.. ..+...+++++++|++++
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 34444444445678899999999999999988874 4 3599999999 99999987653 222234799999999999
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++++||+|++... +.+..+...++.++.|.|||||.++
T Consensus 140 p~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 140 PFDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred CCCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEE
Confidence 888889999998643 3344577889999999999999987
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=4.8e-15 Score=124.12 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=90.4
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+.....++.+|||+|||+|..+..+++.|. +|+|+|.| +|++.+++.++.+++. +++++..|+.+++++ ++||+
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~ 98 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYDF 98 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcCE
Confidence 33334456778999999999999999999865 99999999 8999999999888884 588999998877665 67999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+.+++ .......++..+.++|+|||.++
T Consensus 99 I~~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 99 ILSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred EEEecchhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 9998654443 44567889999999999999965
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.62 E-value=5.6e-15 Score=118.61 Aligned_cols=101 Identities=32% Similarity=0.396 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHH-Hc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCA-KA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a-~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~ 96 (306)
.++.+|||+|||+|.++..++ +. +..+++|+|+| +|++.|++.++.+++. +++++++|+.+++ ++ ++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 467899999999999999999 43 35699999999 9999999999999996 7999999999976 45 79999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+. .+......+++.+.++|+++|.++
T Consensus 80 ~~~l---~~~~~~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 80 NGVL---HHFPDPEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp ESTG---GGTSHHHHHHHHHHHHEEEEEEEE
T ss_pred cCch---hhccCHHHHHHHHHHHcCCCcEEE
Confidence 7543 344677789999999999999997
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=3.9e-15 Score=132.83 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||||||+|.++..+++.|+ +|+|+|.+ +|++.|++++...+...+++++.+++++++.+.++||+|++..+.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4677999999999999999998765 89999999 999999988776665557999999999887666799999995443
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ +-.+...++.++.++|||||.++
T Consensus 209 e---Hv~d~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 209 E---HVANPAEFCKSLSALTIPNGATV 232 (322)
T ss_pred H---hcCCHHHHHHHHHHHcCCCcEEE
Confidence 3 33567889999999999999998
No 18
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=6.2e-15 Score=127.25 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=95.3
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.+.+...+.+|++|||||||.|.+++.+|+.-..+|+|+++| ++.+.+++++++.|++++++++..|..++. ++|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~f 138 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPF 138 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---ccc
Confidence 3444567899999999999999999999999634599999999 999999999999999989999999998875 559
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|-|||--|..++ +....+.++..+.++|+|||+++
T Consensus 139 DrIvSvgmfEhv-g~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 139 DRIVSVGMFEHV-GKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ceeeehhhHHHh-CcccHHHHHHHHHhhcCCCceEE
Confidence 999995443433 34568899999999999999997
No 19
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.62 E-value=5.5e-15 Score=129.23 Aligned_cols=108 Identities=22% Similarity=0.290 Sum_probs=84.2
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
+.+...+.+|.+|||||||.|.+++.+|+. |+ +|+|+.+| +..+.+++.+++.|+++++++...|..+++ .+||
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD 129 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFD 129 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-S
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCC
Confidence 344567899999999999999999999996 66 99999999 899999999999999999999999998764 4899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|+|-.+..++ +...++.+++.+.++|+|||+++
T Consensus 130 ~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 130 RIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp EEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEE
T ss_pred EEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEE
Confidence 99995443333 44678899999999999999997
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=99.62 E-value=7.8e-15 Score=132.84 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||||||+|.++..+++....+|+|+|+| .|++.|+++++.+++.++++++.+|+.++++++++||+|++....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 5788999999999999999998534499999999 899999999999998778999999999988888899999995443
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ -.+...++.++.++|||||.++
T Consensus 197 ~h---~~d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 197 EH---MPDKRKFVQELARVAAPGGRII 220 (340)
T ss_pred hc---cCCHHHHHHHHHHHcCCCcEEE
Confidence 33 3467789999999999999987
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.61 E-value=6.5e-15 Score=123.11 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=87.5
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
.+.......++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.++++ +.+...|+...+++ ++||
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD 96 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYD 96 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCC
Confidence 344444455678999999999999999999875 99999999 8999999988888873 77777787665554 6899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++..+.+++ .....+.+++.+.++|+|||.++
T Consensus 97 ~I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 97 FIFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred EEEEecccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 99998654433 33567889999999999999865
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.61 E-value=1.1e-14 Score=124.98 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
...+++.+.....+.++.+|||+|||+|.++..+++. + ..+|+++|++ ++++.|+++++..++ ++++++.+|+.++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 3445555665566778899999999999999999874 3 4599999999 899999999888877 5799999999888
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.++||+|++... +.+......++.++.++|+|||.++
T Consensus 109 ~~~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 109 PFDDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred CCCCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEE
Confidence 777789999998643 3333566788999999999999987
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=2.7e-15 Score=109.99 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=77.8
Q ss_pred EEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccccCCc
Q 021852 28 LDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 106 (306)
Q Consensus 28 LDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~ 106 (306)
||+|||+|..+..+++.+..+|+++|.+ ++++.+++..... ++.++.++++++++++++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence 8999999999999999867799999999 8999998876543 3569999999999999999999997654444
Q ss_pred chHHHHHHHHhhcccCCeEEE
Q 021852 107 NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 107 ~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+++++.|+|||||+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEe
Confidence 788899999999999999986
No 24
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.60 E-value=1.4e-14 Score=119.45 Aligned_cols=97 Identities=22% Similarity=0.358 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.+++.++..+ ..+|+|+|.+ +|++.++++++++++. +++++++|+.++. ..++||+|+++.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRAL 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehhh
Confidence 358899999999999999988743 5689999999 8999999999999885 5999999998874 3479999999742
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..++.++..+.++|+|||.++
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEE
Confidence 345667788889999999987
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.59 E-value=3e-14 Score=116.52 Aligned_cols=103 Identities=30% Similarity=0.385 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.+++.+++.+.. +|+++|++ .+++.++++++.|++.+ ++++..|..+.. +.++||+|+++++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-PDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-CTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-cccceeEEEEccch
Confidence 7789999999999999999997654 79999999 89999999999999976 999999986643 35899999999863
Q ss_pred cccCC--cchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLF--ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~--~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.... ......++....++|+|||.++
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 32221 1246788888999999999985
No 26
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.1e-14 Score=126.78 Aligned_cols=108 Identities=26% Similarity=0.369 Sum_probs=84.4
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
-.+++.+ ...++.+|||+|||||.|++.+++.|+++|+|+|++ -.++.|+++++.|++...+..-..+..+.. ..+
T Consensus 152 cL~~Le~--~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~ 228 (300)
T COG2264 152 CLEALEK--LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENG 228 (300)
T ss_pred HHHHHHH--hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccC
Confidence 3455553 356899999999999999999999999999999999 688999999999998642333322332222 336
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+||+|.+- ..+..+...+.++|+|||.+|
T Consensus 229 ~~DvIVANILA------~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 229 PFDVIVANILA------EVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred cccEEEehhhH------HHHHHHHHHHHHHcCCCceEE
Confidence 99999999642 345678888899999999998
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=1.5e-14 Score=126.09 Aligned_cols=102 Identities=26% Similarity=0.272 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.++..+++.|. +|+++|+| +|++.|+++++..++.++++++++++.++. .+.++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999999865 99999999 999999999999888778999999998764 44579999999755
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++ .....++..+.++|||||.++
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEE
Confidence 3433 455688999999999999986
No 28
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.58 E-value=4.6e-14 Score=116.04 Aligned_cols=108 Identities=23% Similarity=0.346 Sum_probs=87.3
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.++....++.++||+|||.|..++++|+.|. .|+|+|.| ..++.+++.+++.+++ |+....|+.+..++ +.||+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCE
Confidence 44445566788999999999999999999998 89999999 7899999999888884 99999999888876 78999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+..++ .....+.++..+...++|||.++
T Consensus 98 I~st~v~~fL-~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 98 IVSTVVFMFL-QRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp EEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEE
T ss_pred EEEEEEeccC-CHHHHHHHHHHHHhhcCCcEEEE
Confidence 9997665666 45678899999999999999976
No 29
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.58 E-value=1.4e-14 Score=123.01 Aligned_cols=106 Identities=31% Similarity=0.399 Sum_probs=89.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 96 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~ 96 (306)
.....+|||+|||+|.+++++|+. ...+++++|+. ++++.|+++++.|++.++++++++|+.++. ....+||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 445789999999999999999996 55799999999 899999999999999999999999998875 33357999999
Q ss_pred cccccccCCcc----------------hHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~----------------~~~~~l~~~~~~L~p~G~~i 127 (306)
|+. |+-.+.. .++.++....++|||||.+.
T Consensus 122 NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 122 NPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred CCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 986 4332222 46688888899999999986
No 30
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.57 E-value=4e-14 Score=118.36 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=97.1
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCC------CEEEEEech-HHHHHHHHHHHHcCCCCe--EEEEEce
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECS-QMANMAKQIVEANGFSNV--ITVLKGK 80 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~------~~v~~iD~s-~~~~~a~~~~~~~~~~~~--v~~~~~d 80 (306)
|.+.........++.+|||++||||.+++.+.+ .+. ++|+.+|+| +|+..++++..+.++... +.++.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 444444455667789999999999999999887 334 799999999 999999999988887754 9999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++++++.++|..... +++-+-.+.+..++++.|+|||||++.
T Consensus 168 AE~LpFdd~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred cccCCCCCCcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 99999999999999863 556677788999999999999999986
No 31
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=3.5e-14 Score=108.62 Aligned_cols=104 Identities=25% Similarity=0.401 Sum_probs=85.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~ 100 (306)
|.+|||+|||+|.+++.+++.+..+++++|++ ..++.+++++..+++.++++++++|+.+.. ++.++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 56899999999999999999876799999999 899999999999999888999999998876 667999999999753
Q ss_pred cccC-----CcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLL-----FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~-----~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... .......+++++.++|+|||.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEE
Confidence 2111 11245678899999999999986
No 32
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.53 E-value=1.6e-14 Score=121.41 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHhcc-cCCC------CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC----
Q 021852 5 VVRTKSYQNVIYQNK-FLFK------DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN---- 72 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~-~~~~------~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~---- 72 (306)
..|-...++-+.... ...| |.+|||+|||+|+++..+|+.|+ .|+|+|.+ .|++.|++....+...+
T Consensus 64 ~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~ 142 (282)
T KOG1270|consen 64 QTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIA 142 (282)
T ss_pred chhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccc
Confidence 445555555555433 1233 47899999999999999999986 99999999 89999999855443322
Q ss_pred -eEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 73 -VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 73 -~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++...+++... ++||.|+|..+ +.+-.++..++..+.++|+|+|.++
T Consensus 143 y~l~~~~~~~E~~~---~~fDaVvcsev---leHV~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 143 YRLEYEDTDVEGLT---GKFDAVVCSEV---LEHVKDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred eeeehhhcchhhcc---cccceeeeHHH---HHHHhCHHHHHHHHHHHhCCCCceE
Confidence 3667777777654 56999999654 3344678999999999999999987
No 33
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.53 E-value=1.7e-13 Score=121.34 Aligned_cols=108 Identities=25% Similarity=0.329 Sum_probs=87.1
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
...+++.+. ..++++|||+|||+|.+++.+++.|+++|+|+|++ .+++.|++++..|++.+++.+...+... ...
T Consensus 148 l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~ 223 (288)
T TIGR00406 148 LCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIE 223 (288)
T ss_pred HHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccC
Confidence 344445432 45789999999999999999999888899999999 8999999999999998778777766432 234
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|+++.+. ..+..++..+.++|+|||.++
T Consensus 224 ~~fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li 256 (288)
T TIGR00406 224 GKADVIVANILA------EVIKELYPQFSRLVKPGGWLI 256 (288)
T ss_pred CCceEEEEecCH------HHHHHHHHHHHHHcCCCcEEE
Confidence 789999998531 345678888899999999997
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=9.2e-14 Score=123.15 Aligned_cols=101 Identities=25% Similarity=0.276 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||+|..+..+++.|. +|+|+|.| .+++.++++++.+++ ++++...|+....+ .++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchh
Confidence 4556999999999999999999875 99999999 899999999998887 58888888877655 4789999998765
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++ .....+.++..+.++|+|||.++
T Consensus 195 ~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 195 MFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 554 34577889999999999999965
No 35
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=7.7e-14 Score=121.00 Aligned_cols=105 Identities=17% Similarity=0.279 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH---cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK---AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~---~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
..++.+|||+|||+|.++..+++ .+..+|+|+|.| +|++.|++++..++..++++++.+++.++++ ..+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEeh
Confidence 45788999999999999888876 234599999999 9999999999988887789999999988764 35899998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
....+++. ......++..+.+.|+|||.++.
T Consensus 132 ~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 132 NFTLQFLE-PSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred hhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 76555553 34567899999999999999873
No 36
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.6e-13 Score=123.12 Aligned_cols=106 Identities=23% Similarity=0.191 Sum_probs=84.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++++|||||||+|.++..+++.|+..|+|+|.| .++..++...+..+...++.++.++++++++ .++||+|+|.
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~ 196 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSM 196 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEEC
Confidence 3345789999999999999999999888899999999 7776554433333323479999999998877 5889999996
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
.+.+ +..+...++..+.+.|+|||.++.
T Consensus 197 ~vl~---H~~dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 197 GVLY---HRRSPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred Chhh---ccCCHHHHHHHHHHhcCCCcEEEE
Confidence 4433 345677899999999999999984
No 37
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.52 E-value=1.1e-13 Score=120.97 Aligned_cols=106 Identities=27% Similarity=0.302 Sum_probs=85.4
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
...+.++.+|||||||+|..+..+++....+|+++|+| +|++.|+++... .+++.++.+|+.+.++++++||+|++
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s 123 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYS 123 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEE
Confidence 35677889999999999999988887433499999999 899999887643 25799999999887777789999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....++. .......+++.+.++|||||.++
T Consensus 124 ~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 124 RDAILHL-SYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred hhhHHhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 5322222 22367889999999999999998
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.52 E-value=1.4e-13 Score=121.07 Aligned_cols=105 Identities=24% Similarity=0.327 Sum_probs=88.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH-cCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~-~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
.+.++.+|||+|||+|..++.+++ .+. .+|+++|.+ +|++.|+++....++. +++++.++++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 456889999999999998887776 344 489999999 8999999999888884 799999999988877789999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+.+.++ ......+++++.++|+|||+++.
T Consensus 153 ~~v~~~---~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 153 NCVINL---SPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred cCcccC---CCCHHHHHHHHHHHcCCCcEEEE
Confidence 865332 34567789999999999999873
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.52 E-value=4e-13 Score=103.58 Aligned_cols=103 Identities=23% Similarity=0.309 Sum_probs=82.9
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~iv 95 (306)
....++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.++++++.++.. +++++.+++... ....++||+|+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEE
Confidence 44566789999999999999999884 45799999999 8999999999888875 588988887642 22236899999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+... ......+++.+.++|+|||.++.
T Consensus 94 ~~~~------~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 94 IGGS------GGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ECCc------chhHHHHHHHHHHHcCCCCEEEE
Confidence 8532 13456889999999999999973
No 40
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.51 E-value=4.7e-14 Score=105.21 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=77.3
Q ss_pred EEEEcCCCcHHHHHHHHc---C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc-ccc
Q 021852 27 VLDVGAGTGILSLFCAKA---G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-WMG 100 (306)
Q Consensus 27 VLDlG~G~G~l~~~~a~~---g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~-~~~ 100 (306)
|||+|||+|..+..+++. + ..+++++|+| +|++.+++.....+. +++++++|+.+++...++||+|++. ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999885 3 2699999999 999999999888776 6899999999988666899999993 322
Q ss_pred cccCCcchHHHHHHHHhhcccCCe
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDG 124 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G 124 (306)
++ ........+++.+.++|+|||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 33 466788999999999999998
No 41
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.51 E-value=2.5e-13 Score=120.80 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=84.8
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
++.......++++|||+|||+|.++..++..|+.+|+|+|.| .|+..++...+..+...++.+...++++++.. .+||
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcC
Confidence 344334567789999999999999999988888899999999 78776543322222224688888888887644 6899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+|+|..+.++ ..+...++.++.+.|+|||.++.
T Consensus 191 ~V~s~gvL~H---~~dp~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 191 TVFSMGVLYH---RKSPLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred EEEEcchhhc---cCCHHHHHHHHHHhcCCCCEEEE
Confidence 9999755443 35667899999999999999983
No 42
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=3.7e-13 Score=113.42 Aligned_cols=106 Identities=26% Similarity=0.308 Sum_probs=82.8
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+.....++.+|||+|||+|..+..+++. + ..+|+++|.+ ++++.|+++++.+++.++++++++|..+...+..
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 33444445678899999999999999888873 2 4599999999 8999999999999987789999999977543446
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++..... .+..++.+.|+|||+++
T Consensus 142 ~fD~Ii~~~~~~---------~~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 142 PFDAIIVTAAAS---------TIPSALVRQLKDGGVLV 170 (205)
T ss_pred CccEEEEccCcc---------hhhHHHHHhcCcCcEEE
Confidence 899999864211 12245668899999986
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=3.2e-13 Score=117.49 Aligned_cols=97 Identities=28% Similarity=0.326 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.| .+|+++|+| +|++.|+++.. ...++.+|++++++++++||+|+++..
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 40 QRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLA 112 (251)
T ss_pred ccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECch
Confidence 3456899999999999999888876 499999999 89999887632 246788999988877789999999754
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+..++..++.++.++|+|||.++
T Consensus 113 ---l~~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 113 ---VQWCGNLSTALRELYRVVRPGGVVA 137 (251)
T ss_pred ---hhhcCCHHHHHHHHHHHcCCCeEEE
Confidence 3344577889999999999999997
No 44
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.48 E-value=6.3e-13 Score=120.79 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCC--CeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.+.+|||+|||+|.+++.+++. +..+|+++|.| .+++.|+++++.|+.. .+++++..|..+. ++..+||+|+|++
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc
Confidence 3469999999999999999885 45699999999 8999999999988754 3688888887543 2446899999997
Q ss_pred cccccC--CcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLL--FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~--~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+... .......++....+.|+|||.++
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELY 337 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEE
Confidence 644321 22345678888899999999986
No 45
>PRK14967 putative methyltransferase; Provisional
Probab=99.48 E-value=8.6e-13 Score=112.70 Aligned_cols=112 Identities=24% Similarity=0.285 Sum_probs=87.5
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+.. ....++.+|||+|||+|.++..+++.++++|+++|++ .+++.++++++.++. +++++++|+.+. ++.+
T Consensus 25 l~~~l~~-~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~ 100 (223)
T PRK14967 25 LADALAA-EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFR 100 (223)
T ss_pred HHHHHHh-cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCC
Confidence 3344433 3456788999999999999999999877799999999 899999999988886 588999998764 3557
Q ss_pred eeeEEEEcccccccCCc-------------------chHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFE-------------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++++. |....+ ..+..++..+.++|+|||+++
T Consensus 101 ~fD~Vi~npP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 101 PFDVVVSNPP-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred CeeEEEECCC-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 8999999863 322111 124567788889999999987
No 46
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=5.7e-13 Score=115.71 Aligned_cols=102 Identities=29% Similarity=0.435 Sum_probs=80.4
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
...+++.. ...++.+|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|+++++.+++.+++.+..++
T Consensus 108 ~~l~~l~~--~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------- 177 (250)
T PRK00517 108 LCLEALEK--LVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------- 177 (250)
T ss_pred HHHHHHHh--hcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------
Confidence 34444443 246789999999999999999988888789999999 8999999999999885555544332
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+||+|+++... ..+..++..+.++|+|||.++
T Consensus 178 ~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~li 210 (250)
T PRK00517 178 LKADVIVANILA------NPLLELAPDLARLLKPGGRLI 210 (250)
T ss_pred CCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEE
Confidence 279999997531 345677888899999999998
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=7.4e-13 Score=109.25 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=82.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+. +|+++|.+ ++++.++++++.++. +++++.+|+.+.. .++||+|++++.
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPP 91 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCC
Confidence 45668999999999999999999876 99999999 899999999998886 4889999987653 368999999875
Q ss_pred ccccCC------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLF------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.... ......++.++.++|+|||.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~ 137 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQ 137 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEE
Confidence 322211 1124678888899999999986
No 48
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=1.2e-12 Score=109.85 Aligned_cols=104 Identities=27% Similarity=0.351 Sum_probs=85.3
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeE
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDI 93 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~ 93 (306)
...+.++.+|||+|||+|.+++.+++. + ..+|+++|.+ ++++.|+++++.+++.++++++.+|..+.. ...++||.
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 356788999999999999999998873 3 4599999998 899999999999986678999999987642 12368999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++.. +...+..+++.+.+.|+|||+++
T Consensus 115 V~~~~------~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 115 IFIGG------GSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred EEECC------CcccHHHHHHHHHHHcCCCcEEE
Confidence 99853 22456778889999999999987
No 49
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.46 E-value=6.8e-13 Score=114.57 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~---g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.++.+|||+|||+|.++..+++. +..+|+|+|+| +|++.|+++++..+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 57789999999999999988874 34589999999 99999999988776656799999999887654 58999886
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
...+++ .......+++.+.+.|+|||.++.
T Consensus 130 ~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 130 FTLQFL-PPEDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred cchhhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 554444 234567899999999999999883
No 50
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.46 E-value=1.3e-12 Score=115.26 Aligned_cols=103 Identities=27% Similarity=0.444 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. ++.++||+|++++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP- 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP- 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC-
Confidence 4579999999999999999984 34599999999 89999999999999877899999998653 34468999999864
Q ss_pred cccC-----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLL-----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~-----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.-. ++ .....++..+.++|+|||.++
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~ 248 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV 248 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 2111 11 123567788889999999987
No 51
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.46 E-value=1.3e-12 Score=105.43 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=88.0
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
...+...++.+++|+|||||.+++.++..+ ..+|||+|.+ ++++..++|+++.+. ++++++.+++-+...+..++|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCCCE
Confidence 344678899999999999999999999744 6699999988 899999999999997 5799999999776323237999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+..- + ..++.+++.+...|+|||+++
T Consensus 106 iFIGG------g-~~i~~ile~~~~~l~~ggrlV 132 (187)
T COG2242 106 IFIGG------G-GNIEEILEAAWERLKPGGRLV 132 (187)
T ss_pred EEECC------C-CCHHHHHHHHHHHcCcCCeEE
Confidence 99642 2 678889999999999999998
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=5.1e-13 Score=112.27 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeec--CCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~~D~iv~~ 97 (306)
++.+|||+|||+|.++..+++. +..+|+|+|+| ++++.|+++++.+++ .+++++++|+ +.++ ++.++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999988874 45589999999 899999999998888 4699999999 6665 556789999986
Q ss_pred ccccccCC-----cchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLF-----ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~-----~~~~~~~l~~~~~~L~p~G~~i 127 (306)
........ ....+.++.++.++|+|||.++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 43221110 0124678899999999999997
No 53
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=4.8e-13 Score=114.30 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=83.8
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
++|||+|||+|.++..+++. +..+|+++|+| ++++.+++++...++.++++++..|+.+.+.+ ++||+|++..+.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 47999999999999988884 34589999999 89999999999999988999999998766555 68999998644333
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ...+.++..+.++|+|||.++
T Consensus 80 ~---~~~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 80 I---KDKMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred C---CCHHHHHHHHHHHcCCCCEEE
Confidence 3 457889999999999999988
No 54
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=5.4e-13 Score=116.34 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=80.5
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
......++.+|||+|||+|.++..+++. +..+|+|+|+| .|++.|++. +++++.+|++++. +.++||+|
T Consensus 23 ~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 23 ARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCceEE
Confidence 3345567899999999999999999885 34589999999 899988652 3788999998774 45799999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+.+++ .+...++.++.+.|||||.++
T Consensus 94 ~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~ 123 (255)
T PRK14103 94 VSNAALQWV---PEHADLLVRWVDELAPGSWIA 123 (255)
T ss_pred EEehhhhhC---CCHHHHHHHHHHhCCCCcEEE
Confidence 998654443 466888999999999999987
No 55
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.45 E-value=8.6e-13 Score=112.06 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=81.4
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
.+.+.....++.+|||+|||+|.++..+++.. ..+|+++|.+ ++++.|+++++++++ ++++++.+|..+......+
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCC
Confidence 33334557789999999999999999998853 2479999999 899999999999998 5699999998765433468
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|++.... ..+...+.+.|+|||+++
T Consensus 147 fD~Ii~~~~~---------~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 147 YDRIYVTAAG---------PKIPEALIDQLKEGGILV 174 (215)
T ss_pred CCEEEEcCCc---------ccccHHHHHhcCcCcEEE
Confidence 9999986421 123345668899999986
No 56
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.45 E-value=3.4e-13 Score=109.76 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..-.++||+|||.|.++..+|.. ..+++++|.| ..++.|++++.. . .+|++++.++.+.. |.++||+||..-++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~-P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFW-PEGRFDLIVLSEVL 116 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-G
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCC-CCCCeeEEEEehHh
Confidence 34468999999999999999997 5699999999 899999988753 4 36999999998765 66999999998888
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++.....+..++..+...|+|||.+|
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV 143 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLV 143 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 999777788999999999999999998
No 57
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=9.2e-13 Score=111.54 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=80.1
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
....+.++.+|||+|||+|.++..+++. + ..+|+++|.+ ++++.|+++++..++ ++++++++|......+..+||+
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDR 148 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCE
Confidence 3455678999999999999999988884 3 2599999999 999999999999888 4699999998765445578999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++... . +.+..++.+.|+|||+++
T Consensus 149 I~~~~~---~------~~~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 149 IYVTAA---G------PDIPKPLIEQLKDGGIMV 173 (212)
T ss_pred EEECCC---c------ccchHHHHHhhCCCcEEE
Confidence 998531 1 122235567899999986
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.45 E-value=2.3e-12 Score=107.08 Aligned_cols=100 Identities=28% Similarity=0.314 Sum_probs=81.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
....++.+|||+|||+|.+++.+++.+ ..+|+++|.+ .+++.|+++++.+++. +++++.++... .++ ++||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~-~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP-GKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC-cCCCEEEE
Confidence 345688999999999999999998853 4699999999 8999999999988874 69999988743 233 68999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ..+..++..+.+.|+|||.++
T Consensus 104 ~~~~------~~~~~~l~~~~~~Lk~gG~lv 128 (187)
T PRK08287 104 GGSG------GNLTAIIDWSLAHLHPGGRLV 128 (187)
T ss_pred CCCc------cCHHHHHHHHHHhcCCCeEEE
Confidence 6321 245678888889999999987
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.44 E-value=1.1e-12 Score=124.35 Aligned_cols=103 Identities=24% Similarity=0.232 Sum_probs=85.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||+|||+|.++..+++....+|+|+|+| ++++.|+++.. +...+++++.+|+.+.++++++||+|+|..
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence 356788999999999999998888534489999999 89999988764 444579999999988877778999999964
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+ +..+...++.++.++|+|||.++
T Consensus 341 ~l~---h~~d~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 341 TIL---HIQDKPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred ccc---ccCCHHHHHHHHHHHcCCCeEEE
Confidence 322 33567889999999999999987
No 60
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=9.6e-13 Score=114.95 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=81.8
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
......++.+|||+|||+|.++..+++. +..+|+|+|+| .|++.|+++. .+++++.+|+.++. +..+||+|
T Consensus 25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~~~fD~v 97 (258)
T PRK01683 25 ARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PPQALDLI 97 (258)
T ss_pred hhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CCCCccEE
Confidence 3345567899999999999999988874 45699999999 8999998763 35789999998765 44799999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++....+++ .+...++..+.+.|+|||.++
T Consensus 98 ~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 98 FANASLQWL---PDHLELFPRLVSLLAPGGVLA 127 (258)
T ss_pred EEccChhhC---CCHHHHHHHHHHhcCCCcEEE
Confidence 998654433 456789999999999999987
No 61
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.43 E-value=1.3e-12 Score=120.09 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec--C--CCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE--L--PVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~~~D~iv 95 (306)
.++++|||+|||+|.+++.++..|+.+|+++|.| .+++.|+++++.|++. ++++++++|+.++. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4688999999999999998888788899999999 8999999999999996 47999999997753 1 246899999
Q ss_pred EcccccccCCcc-------hHHHHHHHHhhcccCCeEEEecC
Q 021852 96 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 96 ~~~~~~~~~~~~-------~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
++++ ++..... ....++....++|+|||.++-+.
T Consensus 299 lDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9986 3332221 24455556779999999998433
No 62
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=2.6e-12 Score=114.51 Aligned_cols=101 Identities=27% Similarity=0.481 Sum_probs=81.8
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
.+|||+|||+|.+++.+++. +..+|+++|+| .+++.|+++++.+++.++++++++|+.+. ++.++||+|++++. |.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP-yi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPP-YV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCC-CC
Confidence 68999999999999999884 45699999999 89999999999999877899999998653 34468999999864 21
Q ss_pred cC-----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 103 LL-----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~-----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ++ .....++..+.++|+|||.++
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 10 11 123567888889999999987
No 63
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.42 E-value=2.5e-12 Score=110.76 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=87.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
...++.+|||+|||+|.++..+++.+ ..+++++|.+ .+++.+++++..+++.++++++.+|+.+...+.++||+|++
T Consensus 48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTI 127 (239)
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEE
Confidence 34567899999999999999998865 3799999999 89999999887776666799999999887766678999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... +.+......++..+.++|+|||.++
T Consensus 128 ~~~---l~~~~~~~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 128 AFG---LRNVPDIDKALREMYRVLKPGGRLV 155 (239)
T ss_pred ecc---cccCCCHHHHHHHHHHhccCCcEEE
Confidence 533 3344567889999999999999987
No 64
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.42 E-value=1.9e-12 Score=116.99 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=91.6
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
..++.......++.+|||+|||+|.+++.++..|+ +|+|+|++ .|+..|+++++.+++.+ ++++.+|+.+++++.++
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCC
Confidence 33444444567889999999999999998888754 89999999 89999999999999875 89999999998776689
Q ss_pred eeEEEEcccccccC-------CcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~-------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|+++++ |+.. .......++..+.+.|+|||+++
T Consensus 249 ~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 249 VDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred CCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 999999964 3221 11235788889999999999986
No 65
>PRK08317 hypothetical protein; Provisional
Probab=99.42 E-value=3.3e-12 Score=109.83 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=91.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
..|++.+.....+.++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.++++.. ....+++++.+|+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC
Confidence 456666666667788999999999999999988884 34699999999 89999988732 22357999999998877
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
++.++||+|++..+.. +..+...++..+.++|+|||.++.
T Consensus 83 ~~~~~~D~v~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQ---HLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred CCCCCceEEEEechhh---ccCCHHHHHHHHHHHhcCCcEEEE
Confidence 7778999999975433 335678899999999999999873
No 66
>PRK06922 hypothetical protein; Provisional
Probab=99.42 E-value=2.2e-12 Score=122.72 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=84.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 95 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv 95 (306)
...++.+|||+|||+|.++..+++ .+..+|+|+|+| .|++.|+++....+. ++.++.+|+.+++ +++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEE
Confidence 345789999999999999888877 455699999999 899999888765553 5888999988776 5668999999
Q ss_pred EcccccccC----------CcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLL----------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~----------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.+.+.+. .......+++++.+.|||||.++
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEE
Confidence 875433221 12466788999999999999997
No 67
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.40 E-value=2.8e-12 Score=114.99 Aligned_cols=99 Identities=22% Similarity=0.190 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.++..+++ .+..+|+++|.| +|++.|+++... .+++++.+|+++++++.++||+|++...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999988877 355699999999 899999887542 3578999999988877789999999643
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ +..+...+++++.++|+|||.++
T Consensus 188 L~---~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 188 IE---YWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred hh---hCCCHHHHHHHHHHhcCCCcEEE
Confidence 22 23456778999999999999986
No 68
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.40 E-value=1.3e-12 Score=105.50 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhccc-CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 7 RTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 7 R~~~~~~ai~~~~~-~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
+.+.+.+.+.+... ..++.+|||+|||+|.++..+++.|. +|+++|++ .+++. . ++.....+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~ 72 (161)
T PF13489_consen 5 RYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R----NVVFDNFDAQDP 72 (161)
T ss_dssp CCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T----TSEEEEEECHTH
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h----hhhhhhhhhhhh
Confidence 44556666665443 67889999999999999999988887 99999998 77766 1 122332222333
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.++||+|++..+.+++ .++..++..+.++|||||.++
T Consensus 73 ~~~~~~fD~i~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~ 112 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHL---PDPEEFLKELSRLLKPGGYLV 112 (161)
T ss_dssp HCHSSSEEEEEEESSGGGS---SHHHHHHHHHHHCEEEEEEEE
T ss_pred hccccchhhHhhHHHHhhc---ccHHHHHHHHHHhcCCCCEEE
Confidence 3456899999997654444 578899999999999999987
No 69
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.39 E-value=3.1e-12 Score=106.83 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~ 97 (306)
+..+|||||||+|.++..+|+. +..+|+|+|.+ ++++.|++++...++. +++++++|+.++. ++.+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999988884 45699999999 8999999999988885 7999999998754 444689999987
Q ss_pred ccccccCC-----cchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLF-----ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~-----~~~~~~~l~~~~~~L~p~G~~i 127 (306)
........ .-..+.++..+.++|||||.++
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~ 129 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIH 129 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEE
Confidence 53322111 1112568889999999999986
No 70
>PRK05785 hypothetical protein; Provisional
Probab=99.39 E-value=5e-12 Score=108.04 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||||.++..+++....+|+|+|.| +|++.|++. ...++++++++++++++||+|++...
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~- 119 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFA- 119 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecCh-
Confidence 3578999999999999999988633599999999 999998753 13568899999888899999999643
Q ss_pred cccCCcchHHHHHHHHhhcccCCe
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDG 124 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G 124 (306)
+.+-.+.+.++.++.|.|||.+
T Consensus 120 --l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 120 --LHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred --hhccCCHHHHHHHHHHHhcCce
Confidence 4445678899999999999954
No 71
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.37 E-value=8.4e-12 Score=113.77 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
-++.+.+.+... ..++.+|||+|||+|.+++.+++ .+..+|+|+|+| ++++.|+++++.++. +++++++|+.+.
T Consensus 237 eTE~LVe~aL~~--l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~ 312 (423)
T PRK14966 237 ETEHLVEAVLAR--LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDT 312 (423)
T ss_pred cHHHHHHHhhhc--cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcc
Confidence 345566665532 34567999999999999998887 456699999999 899999999998875 699999998654
Q ss_pred cCC-CceeeEEEEcccccccCCc-----------------------chHHHHHHHHhhcccCCeEEE
Q 021852 85 ELP-VTKVDIIISEWMGYFLLFE-----------------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~-~~~~D~iv~~~~~~~~~~~-----------------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++ .++||+|+|+++ |....+ .....++..+.++|+|||.++
T Consensus 313 ~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 313 DMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred ccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 332 357999999984 321111 123466667778999999976
No 72
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.37 E-value=1e-11 Score=109.92 Aligned_cols=101 Identities=29% Similarity=0.415 Sum_probs=81.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
.+|||+|||+|.+++.+++.. ..+|+|+|+| ++++.|+++++.+++.++++++.+|+.+. ++..+||+|++++. +.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~~~~~fDlIvsNPP-yi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-LAGQKIDIIVSNPP-YI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-CcCCCccEEEECCC-CC
Confidence 699999999999999999853 4599999999 89999999999999876799999998764 34358999999863 21
Q ss_pred cC-----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 103 LL-----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~-----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ++ .....++..+.++|+|||.++
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 11 11 135567788889999999986
No 73
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.37 E-value=9.5e-12 Score=105.99 Aligned_cols=102 Identities=26% Similarity=0.268 Sum_probs=82.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+. +|+|+|+| +|+..|++++..++..+++++..+|+.+++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45789999999999999999998755 99999999 899999999988877667999999988764 78999998533
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++. ....+..++.++.+++++++.+.
T Consensus 129 l~~~-~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 129 LIHY-PASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred HHhC-CHHHHHHHHHHHHHHhCCCEEEE
Confidence 2222 23456778888888888776654
No 74
>PRK04266 fibrillarin; Provisional
Probab=99.36 E-value=1.1e-11 Score=105.59 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=77.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----cCCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~D 92 (306)
..+.++.+|||+|||+|.++..+++. +..+|+|+|.+ +|++.+.++++.. .++.++.+|+.+. .++ ++||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccCC
Confidence 56778999999999999999999984 44589999999 8998887776543 3588999998642 223 5699
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++.. .......++..+.++|||||.++
T Consensus 144 ~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 144 VIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLL 173 (226)
T ss_pred EEEECCC-----ChhHHHHHHHHHHHhcCCCcEEE
Confidence 9998632 11123456788899999999987
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=9.3e-12 Score=112.39 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
...+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|+++++.|++. .+++..|..+. . .++||+|++++..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~-~~~fDlIvsNPPF 271 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-I-KGRFDMIISNPPF 271 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-c-CCCccEEEECCCc
Confidence 34589999999999999998853 4589999999 8999999999999874 46677776543 2 4789999999764
Q ss_pred cccC--CcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLL--FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~--~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+... .......++..+.++|+|||.++
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 3221 12356788999999999999986
No 76
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.36 E-value=8.5e-12 Score=114.51 Aligned_cols=105 Identities=23% Similarity=0.248 Sum_probs=82.6
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+...+.++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++++ ++ .+++...|..++ + ++||.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~-~~fD~ 231 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--N-GQFDR 231 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--C-CCCCE
Confidence 33345567899999999999999999988533499999999 89999998874 33 478888887665 3 68999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+..+. +...++.++..+.++|+|||.++
T Consensus 232 Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 232 IVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred EEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEE
Confidence 9986543333 33456789999999999999987
No 77
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.36 E-value=1.6e-11 Score=102.82 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=81.1
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~ 91 (306)
+.......++.+|||+|||+|.++..+++. +..+|+++|.+ ++++.++++++++++. +++++.+|+.+. ..-...+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCC
Confidence 344445678899999999999999998874 45699999999 8999999999998884 699999988652 1111345
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.++... ...+..++..+.++|+|||.++
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li 139 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLV 139 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEE
Confidence 7666431 1346778899999999999987
No 78
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.36 E-value=5.5e-12 Score=124.36 Aligned_cols=105 Identities=20% Similarity=0.154 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec-CCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE-LPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~~D~iv~~~ 98 (306)
.++++|||+|||+|.+++.+++.|+++|+++|.| .+++.|+++++.|++. ++++++++|+.++. -..++||+|++++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4688999999999999999999989899999999 8999999999999996 58999999987642 1136899999997
Q ss_pred cccccCC---------cchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLF---------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~---------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ++... ......++..+.++|+|||.++
T Consensus 617 P-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~ 653 (702)
T PRK11783 617 P-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLY 653 (702)
T ss_pred C-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEE
Confidence 5 32221 1234567777889999999987
No 79
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1e-11 Score=107.65 Aligned_cols=110 Identities=25% Similarity=0.265 Sum_probs=85.4
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
+.+.+......+.+|||+|||.|.+++.+++. +..+++-+|.+ ..++.|+++++.|+.++. .+...+..+-. + ++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~-~k 224 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-E-GK 224 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-c-cc
Confidence 34444445555569999999999999999994 46799999999 899999999999998653 66666665432 3 49
Q ss_pred eeEEEEcccccccCCcchHH----HHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLN----TVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~----~~l~~~~~~L~p~G~~i 127 (306)
||+|+||+..+- +..... .++.+..+.|++||.+.
T Consensus 225 fd~IisNPPfh~--G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 225 FDLIISNPPFHA--GKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ccEEEeCCCccC--CcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 999999986542 223333 78888899999999875
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.35 E-value=1.3e-11 Score=110.42 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=87.3
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+.....++.+|||+|||+|.++..+++. +..+++++|..++++.+++++++.++.++++++.+|+.+.+++ .+|+
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCE
Confidence 334445667789999999999999999885 4458999998889999999999999988999999999765554 3698
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+...+.+.. .......+++++.+.|+|||+++
T Consensus 219 v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~ 251 (306)
T TIGR02716 219 VLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLL 251 (306)
T ss_pred EEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEE
Confidence 8764332322 33445678999999999999997
No 81
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.35 E-value=1.4e-11 Score=104.86 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=87.5
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
+.+.+.......++.+|||+|||+|.++..+++.+. .+++++|.+ .+++.++++.. ...+++++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 334444434455789999999999999999988654 489999998 89999888765 335689999999887766
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|++... +.+......+++.+.++|+|||.++
T Consensus 104 ~~~~D~i~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 104 DNSFDAVTIAFG---LRNVTDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred CCcEEEEEEeee---eCCcccHHHHHHHHHHHcCCCcEEE
Confidence 678999998543 3344667889999999999999987
No 82
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=1.3e-11 Score=102.83 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.+++.++..++.+|+++|.+ ++++.++++++.+++. +++++++|+.+.. ....+||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 4678999999999999997666667899999999 8999999999999984 6999999987642 12357999999986
Q ss_pred ccccCCcchHHHHHHHHhh--cccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDK--WLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~--~L~p~G~~i 127 (306)
|. .+..+.+++.+.. +|+|+++++
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ 156 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIY 156 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEE
Confidence 32 2344555555443 578888776
No 83
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1e-11 Score=100.01 Aligned_cols=79 Identities=28% Similarity=0.354 Sum_probs=69.5
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
........|++|+|+|||||.+++.++-.|+.+|+|+|++ ++++.+++++.+ +..++.++.+|+.++. .++|.+
T Consensus 38 a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 38 AYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred HHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceE
Confidence 3345667889999999999999999999999999999999 999999999988 3367999999999875 669999
Q ss_pred EEccc
Q 021852 95 ISEWM 99 (306)
Q Consensus 95 v~~~~ 99 (306)
+.|+.
T Consensus 113 imNPP 117 (198)
T COG2263 113 IMNPP 117 (198)
T ss_pred EECCC
Confidence 99974
No 84
>PHA03412 putative methyltransferase; Provisional
Probab=99.35 E-value=2.1e-11 Score=102.83 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc----CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~----g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.+.+|||+|||+|.+++.+++. +..+|+++|++ .+++.|+++.. ++.++++|+....+. .+||+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~-~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD-TLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc-CCccEEEEC
Confidence 3679999999999999988873 34589999999 89999987642 478999999776543 689999999
Q ss_pred ccccccCCc---------chHHHHHHHHhhcccCCeEEEecCc
Q 021852 98 WMGYFLLFE---------NMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 98 ~~~~~~~~~---------~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
+.-.-.... .....++..+.+++++|+.++|...
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 853311111 2244577777789999998888753
No 85
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.34 E-value=2e-12 Score=105.77 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
|++-..+.+.+ .......+|.|+|||+|..+..+++ .+.+.++|+|.| +|++.|++.. .+++|..+|+.++
T Consensus 15 RtRPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w 87 (257)
T COG4106 15 RTRPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTW 87 (257)
T ss_pred ccCcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhc
Confidence 44444454444 4556678999999999999999988 677799999999 9999997654 3689999999999
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. |..+.|++++|....++ .+...++..+...|.|||++-
T Consensus 88 ~-p~~~~dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 88 K-PEQPTDLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred C-CCCccchhhhhhhhhhc---cccHHHHHHHHHhhCCCceEE
Confidence 7 55899999999775544 666778888889999999985
No 86
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.34 E-value=4.4e-13 Score=99.47 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=60.5
Q ss_pred EEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C-CCceeeEEEEccccccc
Q 021852 28 LDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L-PVTKVDIIISEWMGYFL 103 (306)
Q Consensus 28 LDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~~~D~iv~~~~~~~~ 103 (306)
||+|||+|.++..+++. +..+++++|+| .|++.|++++...... ....+..+..+.. . +.++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999888874 55599999999 8998998888877653 2334433333322 1 22599999997655544
Q ss_pred CCcchHHHHHHHHhhcccCCeEE
Q 021852 104 LFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 104 ~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
.++..+++.+.++|+|||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 77889999999999999985
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.34 E-value=1.6e-11 Score=104.00 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=79.4
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.......++.+|||+|||+|.++..+++.+ .+|+++|.+ ++++.|++++++.++. +++++.+|..+...+.++||+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCE
Confidence 3334556788999999999999998888864 489999998 8999999999998885 499999998653223478999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++... . ..+...+.+.|+|||.++
T Consensus 148 I~~~~~---~------~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 148 ILVTAA---A------PEIPRALLEQLKEGGILV 172 (212)
T ss_pred EEEccC---c------hhhhHHHHHhcCCCcEEE
Confidence 998632 1 122345668999999986
No 88
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.34 E-value=7.5e-12 Score=99.61 Aligned_cols=107 Identities=28% Similarity=0.344 Sum_probs=83.4
Q ss_pred CCCCC-EEEEEcCCCcHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDK-VVLDVGAGTGILSLFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~-~VLDlG~G~G~l~~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
+.+.+ +|||+|||.|.+...+++.|.. ..+|+|+| ..++.|+..++++++++.|++.+.|+.+-.+..++||+|+=-
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeec
Confidence 44444 9999999999999999997755 49999999 899999999999999988999999998866555889988752
Q ss_pred cccc--ccC---CcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGY--FLL---FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~--~~~---~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... .++ ...-+...+..+.++|+|||+++
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 1100 111 11223456777889999999998
No 89
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=9.9e-12 Score=117.95 Aligned_cols=112 Identities=22% Similarity=0.358 Sum_probs=86.3
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee--ecCCCc
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE--IELPVT 89 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~ 89 (306)
..+.......++.+|||+|||+|.++..+++.+ .+|+|+|.+ +|++.+++. ++..++++++.+|+.. ++++.+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCC
Confidence 444444445567899999999999999999874 599999999 898876542 2333578999999863 456668
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+||+|+++.+.+++ ....+..++..+.++|+|||.++..
T Consensus 103 ~fD~I~~~~~l~~l-~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 103 SVDLIFSNWLLMYL-SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CEEEEehhhhHHhC-CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99999998765555 2334678999999999999998754
No 90
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=1e-11 Score=106.63 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C----CCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~ 91 (306)
..++++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++++++.++++++.+|+.+.. + +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 456789999999999988777762 46699999999 899999999999999989999999997642 1 13689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
|+|+.+. .......++..+.++|+|||+++.+.
T Consensus 146 D~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 146 DFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9999863 23455677888889999999988544
No 91
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.9e-12 Score=102.84 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=80.5
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
+...+.++.+|||||||+|..+..+|+.. .+|+++|.. +.++.|+++++..|+.+ |.++++|...-.-+..+||.|+
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~I~ 143 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDRII 143 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCEEE
Confidence 44667899999999999999999999963 399999977 99999999999999965 9999999877544558999999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ....++. +.+.|++||+++
T Consensus 144 Vtaa-----a~~vP~~----Ll~QL~~gGrlv 166 (209)
T COG2518 144 VTAA-----APEVPEA----LLDQLKPGGRLV 166 (209)
T ss_pred Eeec-----cCCCCHH----HHHhcccCCEEE
Confidence 8531 1122233 346789999985
No 92
>PRK14968 putative methyltransferase; Provisional
Probab=99.32 E-value=3.1e-11 Score=100.11 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCe-EEEEEceeeeecCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..++.+|||+|||+|.++..+++.+ .+|+++|.+ ++++.+++++..+++.++ +.++++|+.+.. +..+||+|++++
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-RGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-cccCceEEEECC
Confidence 3678899999999999999999884 599999999 899999999998888644 888888886643 445899999985
Q ss_pred ccccc------------------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFL------------------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~------------------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..... .....+..++.++.++|+|||.++
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 42110 001235667888999999999876
No 93
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.32 E-value=3.7e-11 Score=104.33 Aligned_cols=103 Identities=28% Similarity=0.322 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.++..+++. +..+++++|.+ .+++.|++++..+++. +++++++|+.+. ++.++||+|+++++.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP-LPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc-CcCCceeEEEECCCC
Confidence 4569999999999999999984 45599999999 8999999999998885 699999998763 455899999998752
Q ss_pred cccC-----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLL-----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~-----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ++ .....++..+.++|+|||.++
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~ 214 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLL 214 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEE
Confidence 2110 00 112367788889999999987
No 94
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.32 E-value=1.6e-11 Score=105.57 Aligned_cols=98 Identities=27% Similarity=0.328 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.++..+++.+ ..+++++|.+ +++..+++... +++.++.+|+.+.+++.++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 345799999999999999998864 4579999999 88888877543 3688999999988777789999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ +..+...++..+.++|+|||.++
T Consensus 108 l~---~~~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 108 LQ---WCDDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred hh---hccCHHHHHHHHHHHcCCCcEEE
Confidence 33 33567889999999999999987
No 95
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.32 E-value=2.2e-11 Score=106.59 Aligned_cols=108 Identities=16% Similarity=0.026 Sum_probs=85.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....++.+|||+|||+|..+..+++. + ..+|+|+|.+ .+++.++++++++++. ++++++.|+..+....++||.|+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEE
Confidence 44578899999999999999988873 2 3589999999 8999999999999985 59999999877654446799999
Q ss_pred EcccccccC------------Ccc-------hHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLL------------FEN-------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~------------~~~-------~~~~~l~~~~~~L~p~G~~i 127 (306)
+++..+... .+. ....++..+.++|||||+++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 987544321 111 12357888889999999998
No 96
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3e-11 Score=101.92 Aligned_cols=104 Identities=23% Similarity=0.281 Sum_probs=90.9
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHH-c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
|.....+.+|++|||.|+|+|.++..+|+ . +..+|+..|+. +.++.|++|++..++.+++++..+|+.+...+ +.|
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-ccc
Confidence 44557789999999999999999999997 3 34699999998 99999999999999988899999999988766 599
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.|+.++ ++.-.++..+...|+|||.++
T Consensus 165 Dav~LDm--------p~PW~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 165 DAVFLDL--------PDPWNVLEHVSDALKPGGVVV 192 (256)
T ss_pred CEEEEcC--------CChHHHHHHHHHHhCCCcEEE
Confidence 9999875 355678888999999999986
No 97
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.9e-11 Score=105.47 Aligned_cols=98 Identities=30% Similarity=0.438 Sum_probs=77.1
Q ss_pred EEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccccc
Q 021852 26 VVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 103 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~ 103 (306)
+|||+|||||.+++.+++.. ...|+|+|+| ..++.|++++..+++ .++.++.+|+.+- ++ ++||+||||+. |.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~~-~~fDlIVsNPP-Yip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-LR-GKFDLIVSNPP-YIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-cC-CceeEEEeCCC-CCC
Confidence 89999999999999999954 4599999999 899999999999998 5677777776543 23 49999999974 322
Q ss_pred CC-----------c------------chHHHHHHHHhhcccCCeEEE
Q 021852 104 LF-----------E------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 104 ~~-----------~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. | .....++....++|+|||.++
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 11 1 133466777788999998886
No 98
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.30 E-value=3.9e-11 Score=102.45 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=91.1
Q ss_pred ChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 4 D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
|..|.+...+.+.......++.+|||+|||+|.++..+++.+. +++++|.+ .+++.+++++..++.. ++++...++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 103 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVE 103 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHH
Confidence 3455555556665432234588999999999999999988765 79999999 8999999988877653 5888888887
Q ss_pred eecCC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...+ .++||+|++..+ +.+......++..+.+.|+|||.++
T Consensus 104 ~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILF 146 (224)
T ss_pred HhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEE
Confidence 76533 368999998643 2333567789999999999999987
No 99
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=5e-11 Score=105.03 Aligned_cols=117 Identities=25% Similarity=0.334 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
++.+.+.+.......++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++ +....+++++.+|+.+..
T Consensus 93 te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~ 171 (275)
T PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPL 171 (275)
T ss_pred cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcC
Confidence 3455555553344567789999999999999999885 35699999999 89999999987 344457999999985532
Q ss_pred CCCceeeEEEEcccccccCC------------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLF------------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~------------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.++||+|++++. |.... ......++..+.++|+|||.++
T Consensus 172 -~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~ 235 (275)
T PRK09328 172 -PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLL 235 (275)
T ss_pred -CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 3478999999864 22110 0123566777789999999987
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.30 E-value=3.1e-11 Score=114.62 Aligned_cols=104 Identities=20% Similarity=0.236 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.+++.+++ .+..+|+++|+| .+++.|+++++.+++.++++++.+|+.+. ++.++||+|+|++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPP- 215 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPP- 215 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCC-
Confidence 356899999999999998876 456699999999 89999999999999877899999997653 34468999999863
Q ss_pred cccCC------------c------------chHHHHHHHHhhcccCCeEEEe
Q 021852 101 YFLLF------------E------------NMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 101 ~~~~~------------~------------~~~~~~l~~~~~~L~p~G~~ip 128 (306)
|.... | .....++..+.++|+|||.++.
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22111 1 1234567777889999999873
No 101
>PLN03075 nicotianamine synthase; Provisional
Probab=99.30 E-value=4.8e-11 Score=104.46 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCcHH-HHHHH-H-cCCCEEEEEech-HHHHHHHHHHHH-cCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGIL-SLFCA-K-AGAAHVYAVECS-QMANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l-~~~~a-~-~g~~~v~~iD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
++++|+|||||.|.+ ++.++ + .+..+++++|.+ ++++.|++.++. .++.++++|+.+|+.+.....++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 789999999998755 44444 3 346689999999 899999999964 888889999999998764234789999998
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.++ .......+++.+.+.|+|||.++
T Consensus 203 ALi~~--dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 203 ALVGM--DKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred ccccc--ccccHHHHHHHHHHhcCCCcEEE
Confidence 43222 22567889999999999999998
No 102
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.29 E-value=1.7e-11 Score=107.10 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCcH----HHHHHHHcC------CCEEEEEech-HHHHHHHHHHH----HcC-----------------
Q 021852 22 FKDKVVLDVGAGTGI----LSLFCAKAG------AAHVYAVECS-QMANMAKQIVE----ANG----------------- 69 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~----l~~~~a~~g------~~~v~~iD~s-~~~~~a~~~~~----~~~----------------- 69 (306)
.++.+|||+|||||. +++.+++.+ ..+|+|+|+| .|++.|++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999995 566666632 2489999999 89999987531 011
Q ss_pred -----CCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 -----FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 -----~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.++|++.+.|+.+.+.+.++||+|+|..+..++ .......++..+.+.|+|||.++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~ 239 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLF 239 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEE
Confidence 2246899999998876666899999996443333 33456789999999999999997
No 103
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.29 E-value=5.8e-11 Score=98.53 Aligned_cols=112 Identities=19% Similarity=0.177 Sum_probs=84.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-- 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 85 (306)
+++...+.. ..++.+|||++||+|.+++.++..|+++|+++|.+ .+++.++++++.+++.++++++++|+.+..
T Consensus 38 ea~f~~l~~---~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 38 ELFFNILRP---EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF 114 (189)
T ss_pred HHHHHHHHH---hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH
Confidence 344444432 35689999999999999999999999999999999 899999999999998778999999995532
Q ss_pred C--CCceeeEEEEcccccccCCcchHHHHHHHH--hhcccCCeEEE
Q 021852 86 L--PVTKVDIIISEWMGYFLLFENMLNTVLYAR--DKWLVDDGIVL 127 (306)
Q Consensus 86 ~--~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~--~~~L~p~G~~i 127 (306)
+ ....+|+|+.+|. |.. ...+.++..+ ..+|+++|.++
T Consensus 115 ~~~~~~~~dvv~~DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv 156 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPP-FFN---GALQALLELCENNWILEDTVLIV 156 (189)
T ss_pred hhccCCCceEEEECcC-CCC---CcHHHHHHHHHHCCCCCCCeEEE
Confidence 1 1234899998875 322 2334444433 35789999887
No 104
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=3.6e-11 Score=112.54 Aligned_cols=108 Identities=18% Similarity=0.104 Sum_probs=85.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCcee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 91 (306)
....+|.+|||+|||+|..+..+++. + ..+|+|+|.+ ++++.++++++++|+. +++++.+|+.++. ...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccC
Confidence 44567899999999999999988874 2 4599999999 8999999999999995 5999999998764 234689
Q ss_pred eEEEEcccccccCC---c---------ch-------HHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLF---E---------NM-------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~---~---------~~-------~~~~l~~~~~~L~p~G~~i 127 (306)
|.|+++...++... . .. ...++.++.++|||||.++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv 381 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV 381 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 99999865433211 0 11 3467888889999999998
No 105
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.28 E-value=4.1e-11 Score=103.86 Aligned_cols=104 Identities=21% Similarity=0.148 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
...|++|||||||.|..+..++..|++.|+|+|.+ -.....+...+-.+...++..+...+++++. .+.||+|+|-.+
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 56799999999999999999999999999999987 4332222221222332345555556777765 589999999666
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
.|+. .+.-..+..+...|+|||.+|.
T Consensus 192 LYHr---r~Pl~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 192 LYHR---RSPLDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred hhcc---CCHHHHHHHHHHhhCCCCEEEE
Confidence 5543 5566688888899999999873
No 106
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=100.16 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=81.7
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEE-EEEceeeeec-CCCceeeEEEEccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVIT-VLKGKIEEIE-LPVTKVDIIISEWMGY 101 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~D~iv~~~~~~ 101 (306)
..||++|||||..--+.--.+..+|+++|.+ .|-++|.+.++++.-. ++. +++++.++++ +++.++|+||+..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCTLV-- 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEEEE--
Confidence 3689999999977555544445699999999 8999999998888654 465 9999999988 78899999999754
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+....+....+.+..|+|+|||+++
T Consensus 155 -LCSve~~~k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 155 -LCSVEDPVKQLNEVRRLLRPGGRII 179 (252)
T ss_pred -EeccCCHHHHHHHHHHhcCCCcEEE
Confidence 4455677889999999999999997
No 107
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=5.1e-11 Score=111.29 Aligned_cols=107 Identities=19% Similarity=0.090 Sum_probs=84.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
....+|.+|||+|||+|..++.+++.+ ..+|+|+|.+ .++..++++++++|+. ++++.+|+.++. ++.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 456789999999999999999998854 3599999999 8999999999999883 689999998653 234689999
Q ss_pred EEcccccccC------------Ccch-------HHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLL------------FENM-------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~------------~~~~-------~~~~l~~~~~~L~p~G~~i 127 (306)
++++..+... .+.. ...++..+.++|+|||.++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9987533210 1111 2367888889999999998
No 108
>PRK04457 spermidine synthase; Provisional
Probab=99.27 E-value=3.2e-11 Score=105.28 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=86.7
Q ss_pred HHHHHHHhccc-CCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-
Q 021852 10 SYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE- 85 (306)
Q Consensus 10 ~~~~ai~~~~~-~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 85 (306)
.|.+++..... ..++++|||||||+|.++..+++ .+..+|+++|++ ++++.|++.+..++..++++++.+|..+..
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA 131 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH
Confidence 46666543222 34568999999999999998877 456699999999 899999998876655568999999987642
Q ss_pred CCCceeeEEEEcccccc-cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~-~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...++||+|+++..... .........++..+.+.|+|||+++
T Consensus 132 ~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 132 VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 12368999999753221 1111123678889999999999997
No 109
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.27 E-value=5.7e-11 Score=107.70 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee--cCCCceeeEEEEc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 97 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~iv~~ 97 (306)
..+..+||||||+|.++..+|+. +...++|+|++ +++..|.+++..+++. ++.++++|+..+ .++++++|.|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 34679999999999999999984 45699999999 8999999999999995 599999999764 3567899999986
Q ss_pred ccccccCCcc---hHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFEN---MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~---~~~~~l~~~~~~L~p~G~~i 127 (306)
....+.-..+ ..+.++..+.|+|+|||.+.
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 4322211111 23678999999999999986
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.27 E-value=8.8e-11 Score=101.88 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC--CCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~iv~~~ 98 (306)
++.+|||+|||+|.+++.+++ .+..+|+++|+| .+++.|+++++.++ ++++++|+.+... ..++||+|++++
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 346899999999999999887 444599999999 89999999998876 3678888865321 125799999997
Q ss_pred cccccC------------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLL------------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~------------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
. |... ++ ..+..++..+.++|+|||.++
T Consensus 162 P-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~ 213 (251)
T TIGR03704 162 P-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLL 213 (251)
T ss_pred C-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 5 2211 00 123467777889999999987
No 111
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.27 E-value=2.7e-11 Score=99.84 Aligned_cols=117 Identities=29% Similarity=0.373 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 4 D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
|.+| ++..+.|... ..+|.+|||+-||||.+++.+..+||++|+.+|.+ ..+...+++++..+..++++++..|..
T Consensus 26 drvr-ealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 26 DRVR-EALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp HHHH-HHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred HHHH-HHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 3444 4555555532 26899999999999999999999999999999999 899999999999999888999999965
Q ss_pred eec--C--CCceeeEEEEcccccccCCcch-HHHHHHHHh--hcccCCeEEE
Q 021852 83 EIE--L--PVTKVDIIISEWMGYFLLFENM-LNTVLYARD--KWLVDDGIVL 127 (306)
Q Consensus 83 ~~~--~--~~~~~D~iv~~~~~~~~~~~~~-~~~~l~~~~--~~L~p~G~~i 127 (306)
... . ...+||+|+.+|+ |.. .. .+.++..+. .+|+++|.++
T Consensus 103 ~~l~~~~~~~~~fDiIflDPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPP-YAK---GLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--S-TTS---CHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHhhcccCCCceEEEECCC-ccc---chHHHHHHHHHHHCCCCCCCEEEE
Confidence 432 2 4589999999985 322 23 366666655 7999999987
No 112
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=6.3e-11 Score=99.59 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..++.+|||+|||+|.++..+++. +..+++|+|+| +|++.|+++. .++.++++++.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 457789999999999999998885 55699999999 8999998753 246788888877 56678999999976
Q ss_pred cccccCCcchHHHHHHHHhhccc
Q 021852 99 MGYFLLFENMLNTVLYARDKWLV 121 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~ 121 (306)
+.+++ ....+..++.++.+.++
T Consensus 114 vL~hl-~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 114 VLIHI-NPDNLPTAYRELYRCSN 135 (204)
T ss_pred hhhhC-CHHHHHHHHHHHHhhcC
Confidence 65554 34567778888888763
No 113
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=7.8e-11 Score=110.63 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=85.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....+|.+|||+|||+|..+..+++. +..+|+|+|.+ .+++.+++++++.|+. +++++.+|+.++. +..+||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEE
Confidence 34567899999999999999888773 34599999999 9999999999999984 6999999998875 447899999
Q ss_pred EcccccccCC------------cch-------HHHHHHHHhhcccCCeEEEe
Q 021852 96 SEWMGYFLLF------------ENM-------LNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 96 ~~~~~~~~~~------------~~~-------~~~~l~~~~~~L~p~G~~ip 128 (306)
+++..++... +.. ...++..+.++|+|||+++-
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy 375 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY 375 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 8754332110 111 23578888999999999983
No 114
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.26 E-value=3.2e-11 Score=109.55 Aligned_cols=110 Identities=21% Similarity=0.189 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec----CCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----~~~~~~D~iv 95 (306)
.+|++|||+-|-||.+++.||..||++|++||.| ..++.|+++++.||+. +++.++.+|+.++. -.+.+||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3499999999999999999999999999999999 8999999999999986 56899999997753 2246999999
Q ss_pred EcccccccCC------cchHHHHHHHHhhcccCCeEEEecCc
Q 021852 96 SEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 96 ~~~~~~~~~~------~~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
.+|+.+.-.- ..+...++..+.++|+|||.++.+.+
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9986443211 12455677778899999999984444
No 115
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.26 E-value=6.3e-11 Score=110.70 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=83.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC--CCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~i 94 (306)
....+|.+|||+|||+|..+..+++ .+..+|+|+|.+ ++++.+++++++.|+..++++..+|...... +.++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 4467889999999999999999988 455699999999 8999999999999986445556677654432 34689999
Q ss_pred EEcccccccCC---cc----------------hHHHHHHHHhhcccCCeEEEe
Q 021852 95 ISEWMGYFLLF---EN----------------MLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 95 v~~~~~~~~~~---~~----------------~~~~~l~~~~~~L~p~G~~ip 128 (306)
+++...+.... .+ ....++..+.++|||||.++-
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy 366 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY 366 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99864332211 11 124678888899999999983
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=6.5e-11 Score=110.43 Aligned_cols=112 Identities=19% Similarity=0.107 Sum_probs=87.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i 94 (306)
....+|.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.|+. +++++++|+.++. ...++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEE
Confidence 45678899999999999999988874 35699999999 9999999999999985 5999999998764 234789999
Q ss_pred EEcccccccCCc---c----------------hHHHHHHHHhhcccCCeEEEecCc
Q 021852 95 ISEWMGYFLLFE---N----------------MLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 95 v~~~~~~~~~~~---~----------------~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
+++...+..... + ....++....++|+|||.++-+.+
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 998654433211 1 124567788899999999984333
No 117
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.26 E-value=4.3e-11 Score=101.01 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--------CCCce
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVTK 90 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~ 90 (306)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+++| +.+ .+++++++|+++.. ++.++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DPI-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cCC-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 577899999999999999988884 3 358999999874 123 24899999998853 45678
Q ss_pred eeEEEEcccccccCCcc--------hHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~--------~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+|++..++..... ....++..+.++|+|||.++
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~v 162 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFV 162 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99999986444322110 12467888999999999987
No 118
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=8.7e-11 Score=104.95 Aligned_cols=103 Identities=23% Similarity=0.211 Sum_probs=78.7
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.+...+.++.+|||+|||+|.++..+++. + ..+|+++|.+ ++++.|+++++.++. +++.++.+|..+...+..+|
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCc
Confidence 333345678899999999999999999884 3 2479999999 899999999999998 46999999987654344679
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++.. .. +.+...+.+.|+|||.++
T Consensus 151 D~Ii~~~---g~------~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 151 DVIFVTV---GV------DEVPETWFTQLKEGGRVI 177 (322)
T ss_pred cEEEECC---ch------HHhHHHHHHhcCCCCEEE
Confidence 9999852 11 122234567899999875
No 119
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.25 E-value=8.1e-11 Score=101.20 Aligned_cols=108 Identities=27% Similarity=0.274 Sum_probs=85.0
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCcee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKV 91 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 91 (306)
.+.......++.+|||+|||+|.++..+++.++ +|+++|.+ .+++.+++++...+. +++++..++.+.. ...++|
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCc
Confidence 344334456788999999999999999988765 89999999 899999988877765 4788888887664 234789
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++..+ +.+......++..+.++|+|||.++
T Consensus 116 D~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 116 DVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred cEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEE
Confidence 99998643 3333566788999999999999987
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=6.8e-11 Score=111.11 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=84.9
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
....++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++++|+. +++++++|+.++. ++ ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-ccCCE
Confidence 44567899999999999999998884 35699999999 8999999999999985 4999999998763 33 68999
Q ss_pred EEEcccccccC------------Ccch-------HHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLL------------FENM-------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~------------~~~~-------~~~~l~~~~~~L~p~G~~i 127 (306)
|++++..+... .+.. ...++..+.++|+|||.++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99986533211 0011 1357888889999999998
No 121
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.25 E-value=5.9e-11 Score=103.80 Aligned_cols=106 Identities=26% Similarity=0.280 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec--C-CCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE--L-PVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~-~~~~~D~iv~ 96 (306)
.++++|||+-|-||.+++.++..||++|+.+|.| .+++.++++++.|++. ++++++..|+.+.. + ..++||+||.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999999999999999999999 8999999999999986 68999999987642 1 2469999999
Q ss_pred cccccccCC---cchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLF---ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~---~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+.+.-.. +.....++..+.++|+|||.++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~ 235 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLL 235 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 987543221 1245567777889999999987
No 122
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.25 E-value=1.1e-10 Score=98.69 Aligned_cols=101 Identities=19% Similarity=0.094 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC--------------CCeEEEEEceeeeecC
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~ 86 (306)
.++.+|||+|||.|.-+..+|+.|. .|+|+|+| .+++.+.+ ++++ ..+|+++.+|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4678999999999999999999988 89999999 77776533 2222 1358999999988763
Q ss_pred C-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .++||.|+-..+...+ .....+..+..+.++|+|||.++
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 2 3579998875432322 45566788999999999999865
No 123
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.25 E-value=5.1e-11 Score=104.82 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-C---CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g---~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
++.+|||+|||+|.++..+++. + ...|+|+|+| +|++.|+++. .+++++.+|+.++++++++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 4578999999999999888763 2 2379999999 8999887642 35789999999888887899999984
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. +..+.++.|.|+|||.++
T Consensus 159 ~~----------~~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 159 YA----------PCKAEELARVVKPGGIVI 178 (272)
T ss_pred cC----------CCCHHHHHhhccCCCEEE
Confidence 21 123467789999999997
No 124
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.25 E-value=2.7e-11 Score=101.70 Aligned_cols=103 Identities=22% Similarity=0.240 Sum_probs=75.1
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.+...+.+|.+|||||||+|..+..+++. |. .+|+++|.. .+++.|+++++..++. ++.++.+|...-..+..+|
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SE
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCc
Confidence 334456889999999999999999999984 43 379999988 8999999999999984 7999999986643344689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.|++... . +.... .+.+.|++||+++
T Consensus 143 D~I~v~~a---~--~~ip~----~l~~qL~~gGrLV 169 (209)
T PF01135_consen 143 DRIIVTAA---V--PEIPE----ALLEQLKPGGRLV 169 (209)
T ss_dssp EEEEESSB---B--SS--H----HHHHTEEEEEEEE
T ss_pred CEEEEeec---c--chHHH----HHHHhcCCCcEEE
Confidence 99998632 1 12222 3446799999986
No 125
>PRK06202 hypothetical protein; Provisional
Probab=99.24 E-value=5.9e-11 Score=102.00 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=73.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH----cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~----~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
..++.+|||+|||+|.++..+++ .| ..+|+|+|+| +|++.|+++...++ +++...+...++.++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEE
Confidence 35678999999999999888875 23 2489999999 99999988754433 456666666565556799999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.+.+++. ......++.++.++++ ++.++
T Consensus 134 ~~~~~lhh~~-d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 134 TSNHFLHHLD-DAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EECCeeecCC-hHHHHHHHHHHHHhcC-eeEEE
Confidence 9986555543 2345678999989887 44443
No 126
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.23 E-value=2.6e-11 Score=108.46 Aligned_cols=227 Identities=14% Similarity=0.080 Sum_probs=150.0
Q ss_pred HHHHHHHcCCCEEEEEechH-HHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHH-----
Q 021852 37 LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLN----- 110 (306)
Q Consensus 37 l~~~~a~~g~~~v~~iD~s~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~----- 110 (306)
++.+.++. ..+++-.+.++ .-....+++-..+++ +++.+..-+ ..+ ++.|++.++++.. .....+.
T Consensus 381 ~ge~~~q~-~~~r~~~~l~e~~r~if~~~~~~~Kls-n~e~vp~i~---t~~-ds~~ivl~epf~~--tam~PW~~L~F~ 452 (636)
T KOG1501|consen 381 IGEMGRQI-WPKRIQARLSERERVIFNQRLIQLKLS-NNESVPAIM---TSP-DSPDIVLAEPFVK--TAMNPWNHLRFL 452 (636)
T ss_pred Hhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhhh---cCC-CCCceeecchhhh--hccCchhheeee
Confidence 34444442 44556566552 223334444444442 244333222 234 3558888776422 1111121
Q ss_pred HHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCchhhhhhhc-----------CCceEEeeCCCC
Q 021852 111 TVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM-----------MEPLVDTVDQNQ 179 (306)
Q Consensus 111 ~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~-----------~~~~~~~~~~~~ 179 (306)
.....+...+.|+.++.|+.+.+.+.|.+.+.++..+.. ...+.|||++-++++.. ++|+|+| +..
T Consensus 453 Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S~-~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~ 529 (636)
T KOG1501|consen 453 YDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIASD-VGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGI 529 (636)
T ss_pred eeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhccc-ccccccceeeehhHHHHhhchhhhhhhccchhhhc--cCe
Confidence 123445578889999999999999999998888776544 46899999988876632 4689999 889
Q ss_pred ccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecCCCceeEEecCCCC--------CCCCceeEE
Q 021852 180 IVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKS--------RATHWKQTV 251 (306)
Q Consensus 180 ~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p~~--------~~~~W~q~~ 251 (306)
.+++|.++++|+|....+.+ .-.+.+.+.+.-|++.+|++++|+ ++.||||-.+ +..|.+|+|
T Consensus 530 ~~~d~~eIL~F~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~----~~nLSTGLL~~~~~G~~~WN~~~KQ~V 600 (636)
T KOG1501|consen 530 VKGDAVEILRFPIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFG----GINLSTGLLSISSAGVPEWNKGYKQGV 600 (636)
T ss_pred ecCCceeEEEeccCCccccc-----eeEEEccCCCccccceeeEEeeeC----ceeecccceeecCCCCcccCcccccee
Confidence 99999999999999865443 234467899999999999999999 5778886542 246889999
Q ss_pred EecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEE
Q 021852 252 LYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290 (306)
Q Consensus 252 ~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 290 (306)
|++...+ .-.-+++.++.+. +..++|.++|..
T Consensus 601 YF~~t~L--~~~ksl~~~~~F~-----~~TGDI~~qF~~ 632 (636)
T KOG1501|consen 601 YFPITAL--RNDKSLCLHALFD-----KSTGDINFQFGK 632 (636)
T ss_pred EEEhHHh--CCCceEEEEEEEc-----CCCCceEEEecc
Confidence 9875433 3334788888886 335677666543
No 127
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.23 E-value=1.7e-10 Score=98.83 Aligned_cols=101 Identities=24% Similarity=0.245 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+. +|+++|.| +|++.|+++....+..++++++.+|+.. ..++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 35678999999999999999999866 69999999 8999999998888876679999988543 3478999998543
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
.++. ....+..++..+.+.+++++.+
T Consensus 137 l~~~-~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 137 LIHY-PQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhcC-CHHHHHHHHHHHHhhcCCeEEE
Confidence 2222 2345667777777766544443
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=9.3e-11 Score=95.78 Aligned_cols=105 Identities=23% Similarity=0.317 Sum_probs=77.4
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+.....++.+|||+|||+|.++..+++. +.+|+++|.+ .+++.+++++.. .++++++++|+.++.++..++|.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCE
Confidence 333345677889999999999999999998 4699999999 899999888754 24799999999998766557999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++++. +.. ....+..++.. ..+.++|.++
T Consensus 81 vi~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 81 VVGNLP-YNI-STPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred EEECCC-ccc-HHHHHHHHHhc--CCCcceEEEE
Confidence 999974 322 22333434332 2244666665
No 129
>PRK00811 spermidine synthase; Provisional
Probab=99.21 E-value=1.3e-10 Score=102.59 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC--C--CCeEEEEEceeeeec-CCCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG--F--SNVITVLKGKIEEIE-LPVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~-~~~~~~D~i 94 (306)
.++++||+||||.|.++..+++. +..+|+++|++ ++++.|++.+...+ . .++++++.+|...+. ...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35689999999999999999886 67799999999 89999999876432 2 357999999987753 234789999
Q ss_pred EEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.......... .-..+++.+.+.|+|||+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 9986433221111 12567788899999999997
No 130
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.21 E-value=2.2e-10 Score=93.17 Aligned_cols=117 Identities=25% Similarity=0.335 Sum_probs=89.0
Q ss_pred ChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 4 D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
|.+| ++..+.|... ...|.+|||+-+|||.+++.|+..||.+++.+|.+ ..+..++++++..++..+++++..|+.
T Consensus 27 drVR-EalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 27 DRVR-EALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred hHHH-HHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 4555 4555555421 47899999999999999999999999999999999 899999999999998888999999988
Q ss_pred eec--CCC-ceeeEEEEcccccccCCcchH--HHHHHH--HhhcccCCeEEE
Q 021852 83 EIE--LPV-TKVDIIISEWMGYFLLFENML--NTVLYA--RDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~--~~~-~~~D~iv~~~~~~~~~~~~~~--~~~l~~--~~~~L~p~G~~i 127 (306)
... ... ++||+|+.++... .+.. ...+.. -..+|+|+|.++
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv 151 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYA----KGLLDKELALLLLEENGWLKPGALIV 151 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEE
Confidence 441 221 2499999998622 2223 222222 347899999987
No 131
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.21 E-value=2e-10 Score=102.45 Aligned_cols=106 Identities=11% Similarity=-0.007 Sum_probs=76.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCc----eee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVT----KVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~----~~D 92 (306)
+.++.+|||+|||+|..+..+++.. ..+|+++|+| +|++.|++++....-.-++..+.+|+.+. .++.. ...
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 4567899999999999999998864 3589999999 99999988876543223578899999763 34322 222
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++....+ .........+++.+.+.|+|||.++
T Consensus 141 ~~~~gs~~~-~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 141 GFFPGSTIG-NFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EEEeccccc-CCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 333322111 2234566789999999999999987
No 132
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.20 E-value=1e-10 Score=95.72 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=75.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcC--CCCeEEEEEceeeeec----CCCcee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--FSNVITVLKGKIEEIE----LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~~ 91 (306)
....++.+|||||||+|..++.+++. ++++|+..|.++.++.++.+++.|+ ...++++...++.+.. +...+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45678899999999999999999997 7889999998888899999999987 5567888887775421 334689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++.-+ +..+...+.++..+.++|+++|.++
T Consensus 121 D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 121 DVILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp SEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred CEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 99998644 3356788999999999999998854
No 133
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.20 E-value=1.3e-10 Score=97.40 Aligned_cols=105 Identities=19% Similarity=0.266 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE-ceeeeec--CCCceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLK-GKIEEIE--LPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~--~~~~~~D~i 94 (306)
..+.++||+||++.|..++.+|. .+ ..++++||.+ ++++.|++++++.|+.++|+++. +|..+.. ...++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45789999999999999999988 44 5699999998 99999999999999999899999 4765532 235899999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEEecCc
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
+.+. .....+.+++...++|+|||+++.+..
T Consensus 137 FIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 137 FIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 9753 446778899999999999999985543
No 134
>PHA03411 putative methyltransferase; Provisional
Probab=99.20 E-value=2.5e-10 Score=98.52 Aligned_cols=72 Identities=25% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+.+|||+|||+|.+++.+++. +..+|+++|++ .|++.++++. .+++++++|+.++.. ..+||+|++++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCCc
Confidence 4569999999999999888774 34699999999 8999988753 258899999988753 3789999999754
Q ss_pred c
Q 021852 101 Y 101 (306)
Q Consensus 101 ~ 101 (306)
+
T Consensus 137 ~ 137 (279)
T PHA03411 137 G 137 (279)
T ss_pred c
Confidence 3
No 135
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=1.2e-10 Score=99.93 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=79.8
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---C
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---V 88 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~ 88 (306)
|.....+.+|++|||.|+|+|.++..+++ .+..+|+..|.. +.++.|+++++..++.+++++.+.|+.+..++ .
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~ 111 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELE 111 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-T
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccccc
Confidence 44557889999999999999999999998 345699999998 89999999999999998999999999653332 2
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcc-cCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L-~p~G~~i 127 (306)
..+|.|+.++. .+-..+..+.+.| ++||+++
T Consensus 112 ~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 112 SDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp TSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEE
T ss_pred CcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEE
Confidence 67999998763 2233555666888 8999986
No 136
>PLN02476 O-methyltransferase
Probab=99.20 E-value=1.6e-10 Score=100.64 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C----CCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~ 91 (306)
..+.++|||||+|+|..++.+|+. + ..+|+++|.+ +.++.|+++++++|+.++|+++.+++.+.. + ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 456789999999999999999983 2 4489999999 899999999999999989999999986642 1 12589
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
|+|+.+. .......+++.+.++|+|||+++.+.
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 9999864 34567778888889999999998544
No 137
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.19 E-value=1.9e-10 Score=103.23 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.+++.+|+.+ ++|+|+|.+ ++++.|+++++.+++ ++++++.+|+.++.. ..++||+|++++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 357899999999999999999976 599999999 899999999999999 579999999987642 2357999999976
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-. +..+.++..+. -++|+++++
T Consensus 250 r~-----G~~~~~~~~l~-~~~~~~ivy 271 (315)
T PRK03522 250 RR-----GIGKELCDYLS-QMAPRFILY 271 (315)
T ss_pred CC-----CccHHHHHHHH-HcCCCeEEE
Confidence 22 22233333332 356766554
No 138
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=3.1e-10 Score=96.24 Aligned_cols=102 Identities=23% Similarity=0.159 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC--------------CCeEEEEEceeeeec
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF--------------SNVITVLKGKIEEIE 85 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~ 85 (306)
..++.+|||+|||.|.-+..+|+.|. +|+|+|+| ..++.+.+ ++++ ..+|++.++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 35678999999999999999999988 89999999 77776532 3332 246899999998875
Q ss_pred CC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ...||.|+-..+.+.+ .......++..+.++|+|||+++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred cccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 32 2579999976543333 55667788999999999998744
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.18 E-value=2.7e-10 Score=106.94 Aligned_cols=110 Identities=23% Similarity=0.173 Sum_probs=82.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-- 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 85 (306)
+...+.+.......++.+|||+|||+|.+++.+++.+ ++|+|+|.| +|++.|+++++.+++. +++++.+|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhh
Confidence 4444444444456678999999999999999999875 599999999 8999999999999985 6999999987532
Q ss_pred --CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...+||+|++++.-. +. ...+..+.+ ++|+++++
T Consensus 361 ~~~~~~~fD~Vi~dPPr~-----g~-~~~~~~l~~-~~~~~ivy 397 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRA-----GA-AEVMQALAK-LGPKRIVY 397 (443)
T ss_pred hhhhcCCCCEEEECcCCc-----Ch-HHHHHHHHh-cCCCeEEE
Confidence 2346799999997522 22 234455544 57877765
No 140
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.18 E-value=1.7e-10 Score=96.67 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=84.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C----CCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~ 91 (306)
..+.++||+|||++|..++.+|+. + ..+|+.+|.+ +.++.|++++++.|+.++|+++.+++.+.. + +.++|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 456789999999999999999984 3 4599999999 899999999999999999999999997642 1 12589
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
|+|+.+. ........+..+.++|+|||+++.+.
T Consensus 123 D~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 123 DFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred eEEEEcc------cccchhhHHHHHhhhccCCeEEEEcc
Confidence 9999863 34566777888889999999998443
No 141
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=4.9e-10 Score=94.94 Aligned_cols=119 Identities=23% Similarity=0.278 Sum_probs=86.2
Q ss_pred HHHHHHHHHhc---ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 8 TKSYQNVIYQN---KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 8 ~~~~~~ai~~~---~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
++-|.+++... ..-.++..+||+|||+|.+++.++. .+...|+|+|.| .++..|.+|++++++.+++.+++-+++
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 34455554422 2234556899999999999998877 566799999999 899999999999999999999976554
Q ss_pred ee-----cCCCceeeEEEEcccccccC------------Ccc------------hHHHHHHHHhhcccCCeEEE
Q 021852 83 EI-----ELPVTKVDIIISEWMGYFLL------------FEN------------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~-----~~~~~~~D~iv~~~~~~~~~------------~~~------------~~~~~l~~~~~~L~p~G~~i 127 (306)
.- ++..++.|+++||+. |... +|+ .+-.+..-+.|+|+|||.+.
T Consensus 210 ~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred cccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 32 234589999999974 4221 111 12244555679999999886
No 142
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.17 E-value=3.2e-10 Score=83.42 Aligned_cols=100 Identities=31% Similarity=0.353 Sum_probs=78.7
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEccccccc
Q 021852 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFL 103 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~~~~~~ 103 (306)
+++|+|||+|.++..+++.+..+++++|.+ +++..+++.....+ ..+++++..++.+... ...++|+|+++.+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999998888667799999998 78888875444333 3578999999988753 45789999998653321
Q ss_pred CCcchHHHHHHHHhhcccCCeEEEe
Q 021852 104 LFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 104 ~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
......++..+.+.|+|+|.++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEE
Confidence 45778888888999999999873
No 143
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.16 E-value=4e-10 Score=100.46 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC----CCeEEEEEceeeeecCCCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
.++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++++..+. ..++++...|+.++ .++||+|++
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3678999999999999999999865 89999999 899999998876421 13578888887654 378999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.++.. ......++..+.+ +.++|.++
T Consensus 219 ~~vL~H~p-~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYP-QDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecC-HHHHHHHHHHHHh-hcCCEEEE
Confidence 64433221 2233455665544 45666655
No 144
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.15 E-value=2.5e-10 Score=94.90 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=71.1
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--------CC
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP 87 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~ 87 (306)
...+.++.+|||+|||+|.++..+++. +..+|+++|++++. .. .+++++.+|+.+.. ++
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhC
Confidence 455688999999999999999888774 35589999999432 12 34788888886542 34
Q ss_pred CceeeEEEEccccccc-CC-c------chHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFL-LF-E------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~-~~-~------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++|+|+++...++. .. . .....++..+.++|+|||+++
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 143 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFV 143 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 5689999997432210 00 0 123678888899999999987
No 145
>PTZ00146 fibrillarin; Provisional
Probab=99.15 E-value=5.6e-10 Score=97.43 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=78.6
Q ss_pred HHHHHHHH---hcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 9 KSYQNVIY---QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 9 ~~~~~ai~---~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
.....+|. ....+.++.+|||+|||+|.++..+++. + ..+|||+|++ .|.+.+.+.++.. .+|.++..|+.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~ 191 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR 191 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence 34455564 2345788999999999999999999984 3 4589999998 6665444443322 35788888886
Q ss_pred ee---cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EI---ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~---~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ..+.+++|+|+++.. .......++.++.++|||||.++
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva-----~pdq~~il~~na~r~LKpGG~~v 234 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFI 234 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC-----CcchHHHHHHHHHHhccCCCEEE
Confidence 42 122357999999752 12344456667889999999987
No 146
>PLN02672 methionine S-methyltransferase
Probab=99.14 E-value=3.8e-10 Score=113.90 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcc-cCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCC-------------
Q 021852 8 TKSYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFS------------- 71 (306)
Q Consensus 8 ~~~~~~ai~~~~-~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~------------- 71 (306)
++.+.+++.... ...++.+|||+|||+|.+++.+++. +..+|+|+|+| ++++.|+++++.|++.
T Consensus 102 TE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~ 181 (1082)
T PLN02672 102 SFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKT 181 (1082)
T ss_pred HHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccc
Confidence 455555543221 1124579999999999999999884 45699999999 8999999999987542
Q ss_pred --CeEEEEEceeeeecCC-CceeeEEEEcccccccCC---------------------------------c---chHHHH
Q 021852 72 --NVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF---------------------------------E---NMLNTV 112 (306)
Q Consensus 72 --~~v~~~~~d~~~~~~~-~~~~D~iv~~~~~~~~~~---------------------------------~---~~~~~~ 112 (306)
++++++++|+.+.... ..+||+||||+. |.... + .....+
T Consensus 182 l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i 260 (1082)
T PLN02672 182 LLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 260 (1082)
T ss_pred ccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHH
Confidence 4799999998765321 137999999974 32111 0 122456
Q ss_pred HHHHhhcccCCeEEE
Q 021852 113 LYARDKWLVDDGIVL 127 (306)
Q Consensus 113 l~~~~~~L~p~G~~i 127 (306)
+....++|+|||.++
T Consensus 261 ~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 261 VEEGISVIKPMGIMI 275 (1082)
T ss_pred HHHHHHhccCCCEEE
Confidence 667778999999987
No 147
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.12 E-value=4.6e-11 Score=98.83 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcccC--CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC-CCCeEEEEEceee
Q 021852 7 RTKSYQNVIYQNKFL--FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG-FSNVITVLKGKIE 82 (306)
Q Consensus 7 R~~~~~~ai~~~~~~--~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~~ 82 (306)
+++-|.+++.+...+ .+|.+|||...|-|..++.+++.||.+|+.+|.+ ..++.|.-|-=..+ ++..++++.+|+.
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 445677777765443 4699999999999999999999999999999999 78877754321111 1235799999997
Q ss_pred eec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++. +++++||+|+.++.-+.+.++.--..+.+++.|.|+|||.++
T Consensus 196 e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 196 EVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 764 678899999999987777777777889999999999999997
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.10 E-value=7.5e-10 Score=101.62 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.+++.++..+ .+|+|+|.+ .+++.|+++++.+++. +++++.+|+.+... ...+||+|+.++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 456899999999999999999865 599999999 8999999999999985 79999999976531 1246999999986
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-. +..+.+++.+. .++|+++++
T Consensus 310 r~-----G~~~~~l~~l~-~~~p~~ivy 331 (374)
T TIGR02085 310 RR-----GIGKELCDYLS-QMAPKFILY 331 (374)
T ss_pred CC-----CCcHHHHHHHH-hcCCCeEEE
Confidence 22 33345555554 368887765
No 149
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.09 E-value=1e-09 Score=97.04 Aligned_cols=114 Identities=22% Similarity=0.226 Sum_probs=94.6
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeeeecCCC
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEEIELPV 88 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~ 88 (306)
+..++.....+.+|..|||--||||.+.+.+.-.|+ +++|+|++ .|++-|+.|++..++.+ ..+... |++.++++.
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCC
Confidence 455566666788999999999999999999999988 99999999 99999999999998864 555555 999999987
Q ss_pred ceeeEEEEcccccccCC-------cchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~-------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++|.|++++. |+-.. +.....+++.+.+.|++||+++
T Consensus 263 ~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 263 NSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred CccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 78999999974 44322 2346678888899999999886
No 150
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.09 E-value=9.2e-11 Score=97.73 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=73.8
Q ss_pred CCCC-EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDK-VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~-~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++. .++|+|||+|..++.+|.. .++|+|+|.| +|++.|++.....-.....+....++.++.-.++++|+|++...
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3443 8999999999888888887 7799999999 89999987643222222334444445555434689999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|.+ +++.+.+.+.|+||++|-++
T Consensus 110 ~HWF----dle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 110 VHWF----DLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred HHhh----chHHHHHHHHHHcCCCCCEE
Confidence 4544 67889999999999988544
No 151
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.09 E-value=1.1e-09 Score=102.70 Aligned_cols=110 Identities=23% Similarity=0.219 Sum_probs=82.5
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--- 85 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 85 (306)
.+.+.+.+.....++.+|||+|||+|.+++.+|+. +++|+|+|.+ ++++.|+++++.+++ ++++++.+|+.+..
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHH
Confidence 33344444444567789999999999999999986 4699999999 899999999999998 47999999987632
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+||+|+.++.-. +....+++.+. .++|++.++
T Consensus 357 ~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~-~l~~~~ivy 393 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRK-----GCAAEVLRTII-ELKPERIVY 393 (431)
T ss_pred HhcCCCCCEEEECcCCC-----CCCHHHHHHHH-hcCCCEEEE
Confidence 2235799999987532 22344555544 378887664
No 152
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.07 E-value=7.8e-10 Score=92.02 Aligned_cols=110 Identities=30% Similarity=0.308 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
|+..-+..|.. .+.++.+|+|+.||-|.+++.+|+ ..+++|+|+|.+ ..++.++++++.|++.+++.++++|..++
T Consensus 87 rl~~Er~Ri~~--~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 87 RLSTERRRIAN--LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF 164 (200)
T ss_dssp GGHHHHHHHHT--C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-
T ss_pred ccHHHHHHHHh--cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh
Confidence 34444455553 367899999999999999999998 446789999999 89999999999999999999999999988
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
.. ...+|-|+.+.+... ..++.++..++++||++
T Consensus 165 ~~-~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 165 LP-EGKFDRVIMNLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp ---TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred cC-ccccCEEEECChHHH-------HHHHHHHHHHhcCCcEE
Confidence 54 589999998764332 23666677889999876
No 153
>PLN02366 spermidine synthase
Probab=99.07 E-value=1.7e-09 Score=96.19 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=87.3
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHc--CCC-CeEEEEEceee
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEAN--GFS-NVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~--~~~-~~v~~~~~d~~ 82 (306)
.|.+.+... ....++++||+||||.|.++..+++.+ ..+|+.+|++ .+++.|++.+... ++. ++++++.+|..
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~ 155 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV 155 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH
Confidence 455555432 113457899999999999999999864 5699999999 7999999987542 232 58999999986
Q ss_pred eec--CCCceeeEEEEcccccccCCc-chHHHHHHHHhhcccCCeEEEecCc
Q 021852 83 EIE--LPVTKVDIIISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 83 ~~~--~~~~~~D~iv~~~~~~~~~~~-~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
... .+.++||+|+++......... ..-..+++.+.+.|+|||+++.+..
T Consensus 156 ~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 156 EFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred HHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 542 234689999997543321111 1134678888999999999974443
No 154
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.06 E-value=9.7e-10 Score=91.81 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-e-cCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~D~iv~~ 97 (306)
+.++.+|||+|||+|.++..+++.+...++|+|.+ ++++.+++ + +++++.+|+.+ + +++.++||+|++.
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 34678999999999999988887555578999998 88887754 1 36788888865 3 2456789999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCC
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDD 123 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~ 123 (306)
...++ -.+...+++++.+.++++
T Consensus 83 ~~l~~---~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 83 QTLQA---TRNPEEILDEMLRVGRHA 105 (194)
T ss_pred hHhHc---CcCHHHHHHHHHHhCCeE
Confidence 54333 355677788777776653
No 155
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.05 E-value=1.7e-09 Score=97.01 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH---------cCCCCeEEEEEceeeeec----CCC
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA---------NGFSNVITVLKGKIEEIE----LPV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~---------~~~~~~v~~~~~d~~~~~----~~~ 88 (306)
++.+|||+|||.|.-..-..+++.++++|+|++ ..++.|+++.+. ....-...++.+|..... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999999877777777788899999999 888889888721 111124567777765432 232
Q ss_pred --ceeeEEEEc-ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 --TKVDIIISE-WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 --~~~D~iv~~-~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+||+|-|- .++|....+.....++..+...|+|||.+|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 599999995 467777788888999999999999999998
No 156
>PRK01581 speE spermidine synthase; Validated
Probab=99.04 E-value=1.9e-09 Score=96.64 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=83.4
Q ss_pred HHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHH-----HHHcCC-CCeEEEEEce
Q 021852 11 YQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQI-----VEANGF-SNVITVLKGK 80 (306)
Q Consensus 11 ~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~-----~~~~~~-~~~v~~~~~d 80 (306)
|.+.+... ......++||++|||+|..+..+.+.+ ..+|+++|++ ++++.|++. +.+..+ .++++++.+|
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 66666542 223456799999999999988888864 5799999999 899999862 112222 3689999999
Q ss_pred eeeec-CCCceeeEEEEccccccc--CCcchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIE-LPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~-~~~~~~D~iv~~~~~~~~--~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..++. ...++||+|+++...... .....-..++..+.+.|+|||+++
T Consensus 216 a~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V 265 (374)
T PRK01581 216 AKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFV 265 (374)
T ss_pred HHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 98743 234689999998643211 111122467888899999999987
No 157
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.04 E-value=3.9e-09 Score=90.78 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C-C----Cce
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L-P----VTK 90 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~----~~~ 90 (306)
..+.++||+||+++|.-++.+|+. + ..+|+++|.+ +.++.|++++++.|+.++|+++.+++.+.. + + .++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 345679999999999999999883 2 4599999998 899999999999999999999999987642 1 1 268
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCc
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
||+|+.+. ........++.+.++|+|||+++.+..
T Consensus 157 fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 157 FDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred ccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 99999863 334566777778899999999985543
No 158
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.03 E-value=8.9e-10 Score=89.74 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~ 97 (306)
+.+|.+|||+|||.|.+...+.+....+.+|+|++ +.+..+.+ +| +.++++|+++-. +++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 57899999999999999888887445599999998 65555543 23 679999997632 788999999975
Q ss_pred ccccccCCcchHHHHHHHHhhcccC
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVD 122 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p 122 (306)
.. +..-.....+++++.|.-+.
T Consensus 83 qt---LQ~~~~P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 83 QT---LQAVRRPDEVLEEMLRVGRR 104 (193)
T ss_pred hH---HHhHhHHHHHHHHHHHhcCe
Confidence 32 43445667778877666443
No 159
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.01 E-value=4.2e-09 Score=86.66 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=84.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC--CC--------EEEEEech-HHHHHHHHHHHHcCCCCeEEEE
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AA--------HVYAVECS-QMANMAKQIVEANGFSNVITVL 77 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~--------~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~ 77 (306)
.....++.......++..|||--||+|.+.+.++..+ .. +++|.|++ ++++.|+++++..++.+.+.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 4556677766778889999999999999999888742 22 38999999 8999999999999998889999
Q ss_pred EceeeeecCCCceeeEEEEcccccccC-C-----cchHHHHHHHHhhcccCCeEE
Q 021852 78 KGKIEEIELPVTKVDIIISEWMGYFLL-F-----ENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 78 ~~d~~~~~~~~~~~D~iv~~~~~~~~~-~-----~~~~~~~l~~~~~~L~p~G~~ 126 (306)
+.|+.++++..+++|.||+++. |+.. . +.....+++.+.+.|++..++
T Consensus 94 ~~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 94 QWDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp E--GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred ecchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 9999999866689999999974 4321 1 123346677778888884444
No 160
>PRK03612 spermidine synthase; Provisional
Probab=99.01 E-value=1.8e-09 Score=103.18 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHH--HHH---cCCC-CeEEEEEceeeeec-CCCceee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQI--VEA---NGFS-NVITVLKGKIEEIE-LPVTKVD 92 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~--~~~---~~~~-~~v~~~~~d~~~~~-~~~~~~D 92 (306)
.++++|||+|||+|..+..+++.+. .+|+++|++ ++++.++++ +.. +.+. ++++++.+|..+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4578999999999999999988764 799999999 899999983 221 1222 47999999988743 2247899
Q ss_pred EEEEcccccccCC--cchHHHHHHHHhhcccCCeEEEec
Q 021852 93 IIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 93 ~iv~~~~~~~~~~--~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+|+++........ ...-..+++.+.+.|+|||+++.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 9999864322110 111235778888999999999743
No 161
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.99 E-value=7.5e-09 Score=90.93 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceeeeec-CCCceeeEEEE
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 96 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~~D~iv~ 96 (306)
.+++||+||||+|.++..+++.+ ..+|+++|++ ++++.+++.+...+ + ..+++++.+|..+.. ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999998888865 6799999999 89999998875432 1 146888888876532 12378999999
Q ss_pred cccccccCCcc-hHHHHHHHHhhcccCCeEEEec
Q 021852 97 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 97 ~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+.......... ....+++.+.+.|+|||+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 76432211111 1356778889999999999833
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.98 E-value=2.8e-09 Score=94.34 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=71.4
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.......++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.+++++..++..++++++++|+.+..+ .
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~ 100 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--P 100 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--c
Confidence 34445545567788999999999999999999874 589999999 8999999998877755689999999987654 4
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
++|+|++++.
T Consensus 101 ~~d~VvaNlP 110 (294)
T PTZ00338 101 YFDVCVANVP 110 (294)
T ss_pred ccCEEEecCC
Confidence 6899999964
No 163
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.98 E-value=4.8e-09 Score=93.47 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEE-ceeeeec----CCCceeeEE
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLK-GKIEEIE----LPVTKVDII 94 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~----~~~~~~D~i 94 (306)
++.++||||||+|.+...++. ....+++|+|++ .+++.|+++++.| ++.++|+++. .+..++. .+.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 467999999999877655554 444589999999 8999999999999 8988898865 3332221 235789999
Q ss_pred EEccc
Q 021852 95 ISEWM 99 (306)
Q Consensus 95 v~~~~ 99 (306)
+||+.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99986
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.94 E-value=5.9e-09 Score=90.98 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=68.0
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.+.....++.+|||+|||+|.++..+++.+ .+|+++|++ .+++.+++++.. . ++++++++|+.+++++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch--
Confidence 44455554556788999999999999999999984 599999999 899999887754 2 4799999999887654
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
.+|.|++++.
T Consensus 91 ~~d~Vv~NlP 100 (258)
T PRK14896 91 EFNKVVSNLP 100 (258)
T ss_pred hceEEEEcCC
Confidence 5899999975
No 165
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.93 E-value=6.1e-09 Score=95.43 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
+.+|||++||+|.+++.++. .++.+|+++|.+ +.++.++++++.|++. +++++++|+..+....++||+|+.++++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~G- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPFG- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCCC-
Confidence 46899999999999999987 566799999999 8999999999999985 5789999987753213679999999742
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
....+++...+.++++|++..+
T Consensus 136 ------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2234666655678999998733
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=4.1e-09 Score=92.65 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=66.2
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
.+.+.+.....++.+|||+|||+|.++..+++.+. +|+|+|++ +|++.+++++.. ++++++++|+.+++++...
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcC
Confidence 33444445567889999999999999999999865 99999999 899999876632 4799999999988654222
Q ss_pred eeEEEEccc
Q 021852 91 VDIIISEWM 99 (306)
Q Consensus 91 ~D~iv~~~~ 99 (306)
.|.||+|+.
T Consensus 106 ~~~vv~NlP 114 (272)
T PRK00274 106 PLKVVANLP 114 (272)
T ss_pred cceEEEeCC
Confidence 599999974
No 167
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.90 E-value=2.9e-08 Score=81.64 Aligned_cols=110 Identities=24% Similarity=0.288 Sum_probs=83.0
Q ss_pred HHHHHHHHhcccCCCCC-EEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~-~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
+.+.+.+.-...+.... +++|+|+|.|.-++.+|- .+..+++.+|.+ .-+...+..+..-+++ +++++++++++ .
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~ 110 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-P 110 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-T
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-c
Confidence 34445554434444444 899999999998888877 456699999988 7888888888888995 69999999998 3
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+||+|++-.+ ..+..++.-..++|++||.++
T Consensus 111 ~~~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l 145 (184)
T PF02527_consen 111 EYRESFDVVTARAV-------APLDKLLELARPLLKPGGRLL 145 (184)
T ss_dssp TTTT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEE
T ss_pred ccCCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEE
Confidence 34589999999765 456778888889999999987
No 168
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.90 E-value=4.3e-10 Score=92.90 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWM 99 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~ 99 (306)
+-.++||+|||||+.+..+... +.+.+|+|+| +|++.|.++ ++-+ +..++++..+. ...+++|+|++.-+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhH
Confidence 3579999999999999888775 6699999999 999998764 2211 23344443322 34589999998543
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+.+.+.++.++-....+|+|||.+..
T Consensus 198 ---l~YlG~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 198 ---LPYLGALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred ---HHhhcchhhHHHHHHHhcCCCceEEE
Confidence 33557888999999999999999873
No 169
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.90 E-value=6.3e-09 Score=90.23 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=86.8
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC-----CCCeEEEEEceeee
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG-----FSNVITVLKGKIEE 83 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~ 83 (306)
.|.+.+.......++..++|+|||-|.-.+-.-++|..+++++|++ ..++.|+++.+.-. ..-.+.++.+|...
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 3344444345567889999999999988888888899999999998 57788877654211 11136788888754
Q ss_pred ec------CCCceeeEEEEc-ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IE------LPVTKVDIIISE-WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~------~~~~~~D~iv~~-~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. .++.+||+|-|- .++|....+.....++..+.+.|+|||++|
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 32 234459999885 355556666778888999999999999998
No 170
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.88 E-value=8.6e-09 Score=87.62 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=41.3
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHH
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANM 60 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~ 60 (306)
.+..++.......++++|||+|||||.++..+++.|+++|+|+|.+ +|+..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3445555444446889999999999999999999999999999998 67654
No 171
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.87 E-value=1.8e-08 Score=83.98 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~~~ 99 (306)
..+||||||.|.+.+.+|+ .+...++|+|+. ..+..+.+.+...+++ |+.++++|+..+. ++++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3999999999999998888 566799999998 8888888888888884 6999999987732 45689999988644
Q ss_pred ccccCCcc-----hHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFEN-----MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~-----~~~~~l~~~~~~L~p~G~~i 127 (306)
+...-..+ .-+.++..+.+.|+|||.+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 33221111 23578888999999999885
No 172
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=1.5e-08 Score=90.36 Aligned_cols=100 Identities=25% Similarity=0.302 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..+|.+|+|.-||-|.+++.+|+.|+..|+|+|++ ..++.++++++.|++.+.++.+++|+.++......+|-|+.+.+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 55699999999999999999999988789999999 89999999999999998899999999998643378999997654
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .-..++..+.+.+++||++-
T Consensus 266 ~-------~a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 266 K-------SAHEFLPLALELLKDGGIIH 286 (341)
T ss_pred C-------cchhhHHHHHHHhhcCcEEE
Confidence 2 22446666668888899875
No 173
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.85 E-value=2.2e-08 Score=91.21 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=70.9
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC----------------
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---------------- 87 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------------- 87 (306)
.+|||+|||+|.+++.+++. +++|+|+|.+ ++++.|+++++.|++. +++++.+|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 47999999999999988885 5699999999 9999999999999985 599999998774311
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..++|+|+.++.-. +..+.+++.+.+ |+++++
T Consensus 277 ~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivY 308 (353)
T TIGR02143 277 SYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILY 308 (353)
T ss_pred cCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEE
Confidence 01379999998632 334445554433 555554
No 174
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.85 E-value=2.1e-08 Score=91.63 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CC-------------
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LP------------- 87 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~------------- 87 (306)
+.+|||++||+|.+++.+++. +++|+|+|.+ .+++.|+++++.|++. +++++.+|+.+.. +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccc
Confidence 357999999999999988885 6699999999 8999999999999985 7999999987642 10
Q ss_pred -CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 -~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+||+|+.++.-. +..+.++..+.+ |+++++
T Consensus 285 ~~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivy 317 (362)
T PRK05031 285 KSYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILY 317 (362)
T ss_pred cCCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEE
Confidence 12589999998622 333445554433 555543
No 175
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.82 E-value=4.7e-08 Score=82.83 Aligned_cols=105 Identities=16% Similarity=0.047 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHH------H-c----CCCCeEEEEEceeeeecCC-
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVE------A-N----GFSNVITVLKGKIEEIELP- 87 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~------~-~----~~~~~v~~~~~d~~~~~~~- 87 (306)
..++.+||+.|||.|.-+..+|+.|. +|+|+|+| ..++.+.+... . + --..+++++++|+.+++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34678999999999999999999998 79999999 66666644110 0 0 0013689999999988532
Q ss_pred --CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 --~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||.|+=-.... .+....-....+.+.++|+|||.++
T Consensus 120 ~~~~~fD~VyDra~~~-Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 120 NNLPVFDIWYDRGAYI-ALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred cccCCcCeeeeehhHh-cCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 25799988654323 3366677788889999999999986
No 176
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.1e-08 Score=78.66 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=71.1
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
.......|+.++|+|||+|.++...+..++..|.|+|++ +.++.+.+++....+ ++.++++++.++.+..+.||..+
T Consensus 42 ~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 42 NTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred hhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEE
Confidence 334457899999999999999988888888899999999 899999999988877 47999999999887779999999
Q ss_pred Eccc
Q 021852 96 SEWM 99 (306)
Q Consensus 96 ~~~~ 99 (306)
.++.
T Consensus 120 iNpp 123 (185)
T KOG3420|consen 120 INPP 123 (185)
T ss_pred ecCC
Confidence 9864
No 177
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=9e-08 Score=76.59 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
...++|||||+|..+-++++ .+.....+.|++ .+++..++.++.|+. ++.++..|+.+-..+ +++|+++.++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~-~~VDvLvfNPP- 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN-ESVDVLVFNPP- 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc-CCccEEEECCC-
Confidence 67999999999999999988 345578899999 899999999999987 588999888765434 99999999863
Q ss_pred cccCC-------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLF-------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~-------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.... ....+.++..+..+|+|.|.++
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 32211 1124566777778899999985
No 178
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=3.4e-08 Score=82.49 Aligned_cols=108 Identities=22% Similarity=0.372 Sum_probs=74.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcC---------------------------
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANG--------------------------- 69 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~--------------------------- 69 (306)
.....++.+|||||-+|.++..+|+ .|+..|.|+|++ ..+..|+++++..-
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 3456678999999999999999999 788899999999 78999998765321
Q ss_pred -------CCCeEEEEEcee----ee-ecCCCceeeEEEEc----ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 -------FSNVITVLKGKI----EE-IELPVTKVDIIISE----WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 -------~~~~v~~~~~d~----~~-~~~~~~~~D~iv~~----~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++++.+...+. .+ +.+....||+|+|- |+ |.-.+..-+..++..+.++|.|||++|
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWI-HLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWI-HLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeE-ecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 001111111110 00 01234689999983 32 112233456789999999999999998
No 179
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.77 E-value=4.2e-08 Score=83.33 Aligned_cols=86 Identities=30% Similarity=0.356 Sum_probs=72.6
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.....+.++..||++|.|||.++..+.++|+ +|+|+|++ .|+....++.+--..+++.+++++|....++ .
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--P 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--c
Confidence 345566667889999999999999999999999855 99999999 8999888887655556899999999987764 4
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
.||++|++..
T Consensus 123 ~fd~cVsNlP 132 (315)
T KOG0820|consen 123 RFDGCVSNLP 132 (315)
T ss_pred ccceeeccCC
Confidence 7999999853
No 180
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.76 E-value=1.2e-07 Score=81.98 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=77.2
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
......+..+|+|||+|+|.++..+++ .+.-+++..|..++++.+++ .++|+++.+|+. -++| . +|+++
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P-~-~D~~~ 163 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP-V-ADVYL 163 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS-S-ESEEE
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc-c-cccee
Confidence 344556678999999999999999988 56669999999888888776 478999999998 4456 4 99999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCC--eEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDD--GIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~--G~~i 127 (306)
...+.|.. .......+++.+.+.|+|| |+++
T Consensus 164 l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~ll 196 (241)
T PF00891_consen 164 LRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLL 196 (241)
T ss_dssp EESSGGGS--HHHHHHHHHHHHHHSEECTTEEEE
T ss_pred eehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEE
Confidence 87664543 4456668899999999998 9987
No 181
>PLN02823 spermine synthase
Probab=98.74 E-value=7e-08 Score=86.80 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=83.4
Q ss_pred HHHHHHHhcc--cCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceee
Q 021852 10 SYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~~--~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~ 82 (306)
.|.+.+.... .....++||.||+|.|.++..+.+. +..+|+++|++ ++++.|++.+..++ + .++++++.+|..
T Consensus 88 ~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~ 167 (336)
T PLN02823 88 VYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR 167 (336)
T ss_pred HHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH
Confidence 3555554321 1234579999999999999988884 56799999999 89999999875432 2 368999999987
Q ss_pred eec-CCCceeeEEEEcccccccCC---cchHHHHHH-HHhhcccCCeEEE
Q 021852 83 EIE-LPVTKVDIIISEWMGYFLLF---ENMLNTVLY-ARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~-~~~~~~D~iv~~~~~~~~~~---~~~~~~~l~-~~~~~L~p~G~~i 127 (306)
... ...++||+|+.+........ .---..+++ .+.+.|+|||+++
T Consensus 168 ~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 168 AELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred HHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEE
Confidence 753 23468999999853321100 011235666 7789999999987
No 182
>PRK04148 hypothetical protein; Provisional
Probab=98.74 E-value=1.5e-07 Score=72.69 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=59.9
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcH-HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGI-LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~-l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.+.+.|.++....++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.+++. .++++.+|+.+..+.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHH
Confidence 345556655545567899999999996 8999998876 99999999 766666553 267899999876532
Q ss_pred -CceeeEEEEc
Q 021852 88 -VTKVDIIISE 97 (306)
Q Consensus 88 -~~~~D~iv~~ 97 (306)
-+.+|+|.+-
T Consensus 74 ~y~~a~liysi 84 (134)
T PRK04148 74 IYKNAKLIYSI 84 (134)
T ss_pred HHhcCCEEEEe
Confidence 3679999983
No 183
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=9.2e-08 Score=88.76 Aligned_cols=113 Identities=26% Similarity=0.223 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
.++...+.........++.+|||+-||.|.+++.+|+. .++|+|+|++ ++++.|+++++.|++.+ ++++.++++++.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~ 354 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHh
Confidence 34555555555556678899999999999999999975 6699999999 99999999999999965 999999998876
Q ss_pred CC---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ...+|+|+.++.-.++ -+.+++.+.+ ++|..+++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvY 393 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVY 393 (432)
T ss_pred hhccccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEE
Confidence 32 2478999999874433 3455555543 45555553
No 184
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.73 E-value=8.3e-08 Score=79.14 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee-eecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE-EIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~D~iv~~~~~ 100 (306)
+..-|||||||||+.+..+...|. ..+|+|+| +|++.|.+.--+ -.++.+|+- -++++.+.||-+||-...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467999999999999999988884 89999999 999999763111 247777874 467778999999884222
Q ss_pred cccCCc--------chHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFE--------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~--------~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.+.+. .-+..++..+...|++|++.+
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAV 157 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeE
Confidence 222221 123455667888999999987
No 185
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.72 E-value=1.5e-07 Score=81.89 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=64.8
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
.+.+.+.....++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.+++++.. ..+++++++|+.+++++ .
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~ 91 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--D 91 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--H
Confidence 34444444567889999999999999999999864 79999999 899999877643 25799999999887643 4
Q ss_pred ee---EEEEccc
Q 021852 91 VD---IIISEWM 99 (306)
Q Consensus 91 ~D---~iv~~~~ 99 (306)
+| +|++++.
T Consensus 92 ~d~~~~vvsNlP 103 (253)
T TIGR00755 92 FPKQLKVVSNLP 103 (253)
T ss_pred cCCcceEEEcCC
Confidence 66 8999864
No 186
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.70 E-value=2.1e-07 Score=87.37 Aligned_cols=111 Identities=15% Similarity=0.039 Sum_probs=84.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
...+|.+|||++||+|.-+..+|.. +...|+|.|++ .-+..+++++++.|+. ++.+.+.|...+. ++ ..||.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~-~~fD~I 187 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALP-ETFDAI 187 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhch-hhcCeE
Confidence 4578999999999999999888873 34589999999 8899999999999995 5889988887653 33 679999
Q ss_pred EEcccccccC----Ccc---------------hHHHHHHHHhhcccCCeEEEecCce
Q 021852 95 ISEWMGYFLL----FEN---------------MLNTVLYARDKWLVDDGIVLPDKAS 132 (306)
Q Consensus 95 v~~~~~~~~~----~~~---------------~~~~~l~~~~~~L~p~G~~ip~~~~ 132 (306)
+.+...++.. ... .-..++..+.++|||||+++-+.|+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9876544221 000 1136677778999999999855544
No 187
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.68 E-value=6e-08 Score=80.63 Aligned_cols=103 Identities=21% Similarity=0.188 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
+..+.||.|+|-|..+..+...-+.+|-.+|.. ..++.|++.+.... ....++.+..++++..+..+||+|.+-|+.-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 456999999999999986655447899999988 89999987765422 2357888888988875557999999999866
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+| ...++-.++..+...|+|+|.++
T Consensus 134 hL-TD~dlv~fL~RCk~~L~~~G~Iv 158 (218)
T PF05891_consen 134 HL-TDEDLVAFLKRCKQALKPNGVIV 158 (218)
T ss_dssp GS--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHhCcCCcEEE
Confidence 66 45567789999999999999987
No 188
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.68 E-value=2e-07 Score=78.94 Aligned_cols=107 Identities=24% Similarity=0.162 Sum_probs=77.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-c------C----CCCeEEEEEceeeeecC
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-N------G----FSNVITVLKGKIEEIEL 86 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~-~------~----~~~~v~~~~~d~~~~~~ 86 (306)
....++.+||+.|||.|.-...+|+.|. +|+|+|+| ..++.+.+.... . + -.++|++..+|+.++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3456778999999999999999999987 99999999 666666332111 0 0 01358999999988763
Q ss_pred CC-ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~-~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ++||+|+=-.... .....+-+...+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l~-Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLC-ALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSSTT-TS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEecccc-cCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 32 4799999754433 3466778888899999999999954
No 189
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=8e-08 Score=77.84 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=77.4
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.|..+.....|++|||+|+|+|+.++.++++|++.|.+.|+. .....++-+++.|+. .+.+++.|.-. ++..+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~ 143 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAF 143 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcce
Confidence 3445556667799999999999999999999999999999998 566677888889986 58888887754 34789
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
|+++..-+ ..+......++. +.+.|+..|..
T Consensus 144 Dl~LagDl---fy~~~~a~~l~~-~~~~l~~~g~~ 174 (218)
T COG3897 144 DLLLAGDL---FYNHTEADRLIP-WKDRLAEAGAA 174 (218)
T ss_pred eEEEeece---ecCchHHHHHHH-HHHHHHhCCCE
Confidence 99997533 223334445555 44555555543
No 190
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=1.8e-07 Score=78.32 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=75.3
Q ss_pred EEEEEcCCCcHHHHHHHHcC-C--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEEc
Q 021852 26 VVLDVGAGTGILSLFCAKAG-A--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 97 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g-~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~~ 97 (306)
++|++|||.|.....+.+-. . -.|+++|.| .+++..+++...+. .++.....|+..-. .+.+++|+|++-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 79999999999888887732 2 389999998 78888877655443 34444444543322 345899999875
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEEecCceEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 134 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~ 134 (306)
.+.+.+ +.......+..+.++|||||.++...+..|
T Consensus 152 FvLSAi-~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 152 FVLSAI-HPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEecc-ChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 443433 445667889999999999999986554433
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.5e-07 Score=80.84 Aligned_cols=87 Identities=21% Similarity=0.304 Sum_probs=70.8
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc-
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT- 89 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 89 (306)
.+.|.......++..|||||+|.|.++..+++.++ +|+|+|++ .++...++... ..++++++++|+....++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc
Confidence 45555556677799999999999999999999855 79999999 89998888765 23579999999998887622
Q ss_pred eeeEEEEccccccc
Q 021852 90 KVDIIISEWMGYFL 103 (306)
Q Consensus 90 ~~D~iv~~~~~~~~ 103 (306)
.++.||+|.. |..
T Consensus 95 ~~~~vVaNlP-Y~I 107 (259)
T COG0030 95 QPYKVVANLP-YNI 107 (259)
T ss_pred CCCEEEEcCC-Ccc
Confidence 7899999964 544
No 192
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.65 E-value=7e-08 Score=78.00 Aligned_cols=75 Identities=11% Similarity=0.025 Sum_probs=60.8
Q ss_pred EEEech-HHHHHHHHHHHHcC--CCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 50 YAVECS-QMANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 50 ~~iD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
+|+|.| +|++.|+++.+..+ ..++++++.+|++++++++++||+|++... +.+-.+...+++++.|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG---LRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch---hhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999 99999987765322 234799999999999888789999998643 334467888999999999999998
Q ss_pred E
Q 021852 127 L 127 (306)
Q Consensus 127 i 127 (306)
+
T Consensus 78 ~ 78 (160)
T PLN02232 78 S 78 (160)
T ss_pred E
Confidence 7
No 193
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.64 E-value=2.4e-07 Score=84.57 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 99 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~~ 99 (306)
+.+|||+.||+|..++.+++. |+++|+++|++ +.++.++++++.|+.. +++++++|+..+.. ...+||+|..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 358999999999999999985 78899999999 8999999999999985 58999999887642 1357999999874
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ ....+++.+.+.++++|.+.
T Consensus 124 G-------s~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEE
Confidence 2 22357777778889999986
No 194
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.64 E-value=2.5e-07 Score=78.58 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=80.0
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~~~ 99 (306)
..+||||||.|.+...+|+ .+...++|||+. ..+..|.+.+.+.++. |+.++..|+..+. .++++.|-|..+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999888887 566689999988 8888888888999985 7999999998764 34459999887644
Q ss_pred ccccCCcc-----hHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFEN-----MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~-----~~~~~l~~~~~~L~p~G~~i 127 (306)
+...-..+ .-+.++..+.+.|+|||.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 33221111 33578888999999999986
No 195
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.63 E-value=2.8e-07 Score=78.47 Aligned_cols=91 Identities=33% Similarity=0.353 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
...++||||+|.|..+..++.. .++|++.|.| .|... +++.|+ +++ +..++.-.+.+||+|.|--+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~----~vl--~~~~w~~~~~~fDvIscLNv-- 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGF----TVL--DIDDWQQTDFKFDVISCLNV-- 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCC----eEE--ehhhhhccCCceEEEeehhh--
Confidence 4578999999999999999886 6699999999 78544 444555 333 22223323468999998422
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.....+..+++.+++.|+|+|++|
T Consensus 161 -LDRc~~P~~LL~~i~~~l~p~G~li 185 (265)
T PF05219_consen 161 -LDRCDRPLTLLRDIRRALKPNGRLI 185 (265)
T ss_pred -hhccCCHHHHHHHHHHHhCCCCEEE
Confidence 4444677789999999999999987
No 196
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.63 E-value=5.3e-07 Score=81.16 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------C-------
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------A------- 47 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~---------------------------------~------- 47 (306)
++....+|.......++..++|--||+|-+.+.+|..+. +
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 356777888778888889999999999999999988542 1
Q ss_pred EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc--cCCcchHHHHHH----HHhhcc
Q 021852 48 HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF--LLFENMLNTVLY----ARDKWL 120 (306)
Q Consensus 48 ~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~--~~~~~~~~~~l~----~~~~~L 120 (306)
.++|+|++ .+++.|+.|+++.|+.+.|+|..+|+..+.-+.+.+|+||||+. |+ +..+.....+.. .+.+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHh
Confidence 47899999 89999999999999999999999999998744478999999975 43 223333333433 444555
Q ss_pred cCCeEEE
Q 021852 121 VDDGIVL 127 (306)
Q Consensus 121 ~p~G~~i 127 (306)
+--+..+
T Consensus 335 ~~ws~~v 341 (381)
T COG0116 335 AGWSRYV 341 (381)
T ss_pred cCCceEE
Confidence 5555554
No 197
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.62 E-value=3.1e-07 Score=83.65 Aligned_cols=85 Identities=29% Similarity=0.289 Sum_probs=59.0
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---------
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--------- 85 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 85 (306)
.......++ .|||+-||.|.+++.+|+. +++|+|+|.+ ++++.|+++++.|++. +++++.++++++.
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~ 266 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREF 266 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GG
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHH
Confidence 333444444 8999999999999999996 5699999998 9999999999999995 6999988776542
Q ss_pred -------CCCceeeEEEEccccccc
Q 021852 86 -------LPVTKVDIIISEWMGYFL 103 (306)
Q Consensus 86 -------~~~~~~D~iv~~~~~~~~ 103 (306)
+....+|+|+.+|+-.++
T Consensus 267 ~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 267 NRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp TTGGGS-GGCTTESEEEE---TT-S
T ss_pred HhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 112368999999875544
No 198
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=3.6e-07 Score=76.56 Aligned_cols=95 Identities=24% Similarity=0.300 Sum_probs=77.2
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce-eeEEEEcccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK-VDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~D~iv~~~~~ 100 (306)
+++++|||+|.|.-++.+|- .+..+|+-+|.. .-+...+...++.+++ +++++++.++++.-. .+ ||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 68999999999999888874 445579999987 7788888888888984 699999999998632 34 999999764
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+..+..-+..++++||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 355667777789999999875
No 199
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.61 E-value=5.2e-07 Score=71.33 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=78.0
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCC
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPV 88 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 88 (306)
.......|.-||++|.|||.++..+...|. ..++++|.| +......+.. +.+.++++|+.++. .++
T Consensus 42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred hccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCC
Confidence 334556688999999999999999988774 479999999 8877776553 34679999998775 346
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..||.|+|....- ......--++++.+...|.+||.++
T Consensus 116 q~~D~viS~lPll-~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 116 QFFDSVISGLPLL-NFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred CeeeeEEeccccc-cCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 7899999964311 1122334467888888899999887
No 200
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.60 E-value=3.1e-07 Score=75.99 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=76.0
Q ss_pred CCCC-EEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC--------CCce
Q 021852 22 FKDK-VVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTK 90 (306)
Q Consensus 22 ~~~~-~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~ 90 (306)
.+.. +|||||||||.-+..+|+ .+.-.-.-.|.+ ......+..+...++++-..-+..|+..-.. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3344 599999999999988888 555567778877 5556666777777776544445555544321 2358
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||.|++.-|.|.. .......++....++|++||.++
T Consensus 103 ~D~i~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 103 FDAIFCINMLHIS-PWSAVEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred cceeeehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999996665654 44567889999999999999987
No 201
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.60 E-value=3.8e-07 Score=90.34 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=84.9
Q ss_pred HHHHHHHHhcccC-CCCCEEEEEcCCCcHHHHHHHHcC------------------------------------------
Q 021852 9 KSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG------------------------------------------ 45 (306)
Q Consensus 9 ~~~~~ai~~~~~~-~~~~~VLDlG~G~G~l~~~~a~~g------------------------------------------ 45 (306)
+....+|...... .++..++|.+||+|.+.+.+|...
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4566666665555 568899999999999988886520
Q ss_pred -CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--CceeeEEEEccccccc--CCcchHHHHHHHHhhc
Q 021852 46 -AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFL--LFENMLNTVLYARDKW 119 (306)
Q Consensus 46 -~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~iv~~~~~~~~--~~~~~~~~~l~~~~~~ 119 (306)
..+++|+|++ .+++.|++++..+|+.+.+++.++|+.++..+ .+++|+|++|+. |+. .....+..+...+...
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP-Yg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP-YGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC-CcCccCchHHHHHHHHHHHHH
Confidence 1269999999 89999999999999988899999999887643 246999999974 432 1223444454444333
Q ss_pred cc---CCeEE
Q 021852 120 LV---DDGIV 126 (306)
Q Consensus 120 L~---p~G~~ 126 (306)
++ +|+.+
T Consensus 334 lk~~~~g~~~ 343 (702)
T PRK11783 334 LKQQFGGWNA 343 (702)
T ss_pred HHHhCCCCeE
Confidence 33 66554
No 202
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.2e-07 Score=76.91 Aligned_cols=105 Identities=26% Similarity=0.359 Sum_probs=76.4
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEE-EEEceeeeec--
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVIT-VLKGKIEEIE-- 85 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-- 85 (306)
....|+....-..+|.++||+|+.||.++..+.+.||++|||+|.. ..+..--+ +. .++. .-..+++.+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d--~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----ND--PRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh----cC--CcEEEEecCChhhCCHH
Confidence 4456666666678899999999999999999999999999999987 54443211 11 2343 3445555543
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+. +..|+++++. +|. .+..++..+..+++|++.++
T Consensus 140 ~~~-~~~d~~v~Dv--SFI----SL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 140 DFT-EKPDLIVIDV--SFI----SLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred Hcc-cCCCeEEEEe--ehh----hHHHHHHHHHHhcCCCceEE
Confidence 33 4789999985 333 56678888889999999876
No 203
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.57 E-value=1.7e-07 Score=75.17 Aligned_cols=74 Identities=24% Similarity=0.280 Sum_probs=56.0
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCce-eeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTK-VDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~-~D~iv~~~~ 99 (306)
.+|+|+.||.|.-++.+|+. ..+|+|+|++ ..++.|+.+++-.|..++|+++++|+.++. +.... +|+|+.++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 37999999999999999998 5599999999 899999999999999899999999998864 22122 899998764
No 204
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=1.7e-06 Score=72.12 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~ 91 (306)
..+.+++||||.-||.-++..|.+ ...+|+++|++ +..+.+.+..+..|...+|+++++++.+.. .+.+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 567889999999999888877773 24599999999 899999999999999999999999885532 235799
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 135 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~ 135 (306)
|.++.+. +....-....++.+++++||+++.+....+.
T Consensus 151 DfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 9999752 2233346677778999999999866554444
No 205
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.54 E-value=6.6e-07 Score=74.93 Aligned_cols=113 Identities=17% Similarity=0.269 Sum_probs=65.0
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHH-------HHcCC-CCeEEEEEc
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIV-------EANGF-SNVITVLKG 79 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~-------~~~~~-~~~v~~~~~ 79 (306)
.+.+.+. ...+.++.+.+|||||.|...+.+|. .+.++++|||+. ...+.|+... +..+. ..++++.++
T Consensus 30 ~~~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 30 FVSKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 3344443 35678899999999999999887765 788899999987 5555554322 23333 257888888
Q ss_pred eeeeecCC---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 80 KIEEIELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 80 d~~~~~~~---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+.+.+.. -...|+|+++-. . +.+.+...+......||+|.++|
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~---~-F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNT---C-FDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--T---T-T-HHHHHHHHHHHTTS-TT-EEE
T ss_pred CccccHhHhhhhcCCCEEEEecc---c-cCHHHHHHHHHHHhcCCCCCEEE
Confidence 87654311 146899999753 3 23444445566667889999887
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.53 E-value=6e-07 Score=77.65 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=82.4
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCC---CCeEEEEEceee
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGF---SNVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~---~~~v~~~~~d~~ 82 (306)
.|.+++... ....+.++||-||.|.|..+..+.+.. ..+|+++|++ .+++.|++.+..... .++++++.+|..
T Consensus 61 ~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~ 140 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR 140 (246)
T ss_dssp HHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred HHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence 355555421 122367899999999999999999865 6799999999 899999988765322 258999999997
Q ss_pred eec-CCCc-eeeEEEEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE-LPVT-KVDIIISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~-~~~~-~~D~iv~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
.+. -..+ +||+|+.+.......... --..+++.+.+.|+|||+++
T Consensus 141 ~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v 188 (246)
T PF01564_consen 141 KFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV 188 (246)
T ss_dssp HHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred HHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence 753 1224 899999986542211111 23568888999999999997
No 207
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.4e-06 Score=74.21 Aligned_cols=106 Identities=24% Similarity=0.277 Sum_probs=82.4
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--C
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--V 88 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~ 88 (306)
.|.....+.||.+|++-|+|+|.++.++++ ++-.+++..|.. .-++.|++.+++.++++++++++.|+....+. .
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccc
Confidence 344557789999999999999999999999 345699999998 78999999999999999999999999876543 4
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCe-EEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G-~~i 127 (306)
..+|.|+.++. ..+.++=. +...||.+| +++
T Consensus 176 ~~aDaVFLDlP-------aPw~AiPh-a~~~lk~~g~r~c 207 (314)
T KOG2915|consen 176 LKADAVFLDLP-------APWEAIPH-AAKILKDEGGRLC 207 (314)
T ss_pred cccceEEEcCC-------Chhhhhhh-hHHHhhhcCceEE
Confidence 68999998753 22232222 334677665 554
No 208
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.3e-06 Score=71.72 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=72.8
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH-cCCC--EEEEEec-hHHHHHHHHHHHHcC--------CC-CeEEEEEceeeeecC
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK-AGAA--HVYAVEC-SQMANMAKQIVEANG--------FS-NVITVLKGKIEEIEL 86 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~-~g~~--~v~~iD~-s~~~~~a~~~~~~~~--------~~-~~v~~~~~d~~~~~~ 86 (306)
++.+|...||+|+|||.|+-++++ .|+. .++|||. ++.++.+++++.+.- +. .++.++.+|......
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 478999999999999999998886 3432 4499995 499999999886543 21 467888999988776
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+||.|.+.. ....+.+++...|++||.++
T Consensus 159 e~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 159 EQAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred ccCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 678999999742 11223334446778888765
No 209
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.49 E-value=2.7e-06 Score=73.53 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CC--CceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LP--VTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~~~D~i 94 (306)
...-+||||.||.|...+-+.. .+ ..+|...|.| ..++..++.++++|+.+.++|.++|+.+.. +. ..+.+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4567999999999988777765 33 3589999999 789999999999999887799999987653 11 2456887
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...+...+.....+...+..+.+.+.|||.+|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 775442223233456778888999999999998
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=98.49 E-value=1.1e-06 Score=76.15 Aligned_cols=114 Identities=18% Similarity=0.031 Sum_probs=81.4
Q ss_pred HHHHHHHhccc--CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc--CCC-CeEEEEEceeee
Q 021852 10 SYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN--GFS-NVITVLKGKIEE 83 (306)
Q Consensus 10 ~~~~ai~~~~~--~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~--~~~-~~v~~~~~d~~~ 83 (306)
.|.+.|.+-.- -...++||-+|.|-|..+..+.++.. +|+-||++ ++++.+++.+... ++. +|++++.. +.+
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~ 134 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD 134 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh
Confidence 56666654222 24568999999999999999999864 99999999 8999998854321 232 57887762 211
Q ss_pred ecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEE
Q 021852 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 135 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~ 135 (306)
...++||+||.+.. .-+.+.+.+.+.|+|||+++-+..+.+.
T Consensus 135 --~~~~~fDVIIvDs~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 135 --LDIKKYDLIICLQE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred --ccCCcCCEEEEcCC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 12378999999742 1145677788999999999866554443
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.48 E-value=1.3e-06 Score=76.66 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=81.7
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceeeeecC-CCceeeEEEEcc
Q 021852 25 KVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIEEIEL-PVTKVDIIISEW 98 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~-~~~~~D~iv~~~ 98 (306)
++||-||.|.|..+..+.+.. ..+++.+|++ .+++.+++.+.... . ..|++++.+|..++.- ...+||+|+.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999964 6799999999 89999999875332 2 2689999999877642 224899999976
Q ss_pred cccccCCcc-hHHHHHHHHhhcccCCeEEEecCc
Q 021852 99 MGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 99 ~~~~~~~~~-~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
.+.....+. .-..+++.+.+.|+++|+++-+..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 444211111 125788889999999999984433
No 212
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.45 E-value=1.4e-07 Score=78.16 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=81.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
...++|||||.|.++..+...|..+++-+|.| .|++.++.. +.+++ .+....+|-+.+++.+.++|+|++.+-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSls--- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLS--- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhh---
Confidence 45899999999999999988888899999999 999988653 34454 456677788888888899999999764
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++..+++.....+...|||+|.+|
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccch
Confidence 4455788888888889999999998
No 213
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=7e-07 Score=73.89 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=74.3
Q ss_pred HHHHHHHHHHH---hcccCCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 6 VRTKSYQNVIY---QNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 6 ~R~~~~~~ai~---~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
-|.++..+.++ +..-+.++.+|+|||+-+|.++..+++. +. .+|+|+|+.+|-.. ..|.++++|
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d 93 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGD 93 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeee
Confidence 34445455443 3344567899999999999999999984 33 25999998754222 248899999
Q ss_pred eeeec--------CCCceeeEEEEcccccccCC--------cchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIE--------LPVTKVDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~--------~~~~~~D~iv~~~~~~~~~~--------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++-. ++..++|+|+|++....... ......+++-...+|+|||.++
T Consensus 94 ~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 94 ITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred ccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 87654 34456899999875421111 1122234445567999999987
No 214
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.39 E-value=3.3e-07 Score=75.60 Aligned_cols=94 Identities=28% Similarity=0.355 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--------CC--Cce
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP--VTK 90 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~--~~~ 90 (306)
++.+|||+||++|.++..+.+.+ ..+|+|+|...+ ... ..+..+.+|+.+.. ++ .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 44899999999999999999987 679999998744 111 24666677765432 11 268
Q ss_pred eeEEEEcccccccCC----c----chHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLF----E----NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~----~----~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+|+........ + ......+..+..+|+|||.++
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 999999863222211 1 111122334457899999876
No 215
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.39 E-value=2.8e-06 Score=71.16 Aligned_cols=102 Identities=26% Similarity=0.329 Sum_probs=70.9
Q ss_pred EEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccccC
Q 021852 27 VLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 104 (306)
Q Consensus 27 VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~ 104 (306)
|.||||-.|.+++.+.+.| +.+++|+|++ .-++.|+++++.+++.++++++.+|-.+.--+.+.+|.|+...||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 6899999999999999977 4589999999 8899999999999999999999999654322334489988865543
Q ss_pred CcchHHHHHHHHhhcccCCeEEEecCceEEEEEeec
Q 021852 105 FENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 140 (306)
Q Consensus 105 ~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~ 140 (306)
.....++.+....++....+| ++|...
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lI-------LqP~~~ 104 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLI-------LQPNTH 104 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEE-------EEESS-
T ss_pred --HHHHHHHHhhHHHhccCCeEE-------EeCCCC
Confidence 345567776666666555665 666654
No 216
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.38 E-value=6e-06 Score=71.67 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHhcccC-------CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH----cC---
Q 021852 5 VVRTKSYQNVIYQNKFL-------FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA----NG--- 69 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~-------~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~----~~--- 69 (306)
..|...|...+...... ..+.+||--|||.|.|+..+|+.|. .+.|.|.| -|+-...-.+.. +.
T Consensus 31 ~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I 109 (270)
T PF07942_consen 31 EERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTI 109 (270)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEE
Confidence 45666666555432222 3357999999999999999999988 99999999 786554443321 10
Q ss_pred --------------------------------CCCeEEEEEceeeeecCCC---ceeeEEEEcccccccCCcchHHHHHH
Q 021852 70 --------------------------------FSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFENMLNTVLY 114 (306)
Q Consensus 70 --------------------------------~~~~v~~~~~d~~~~~~~~---~~~D~iv~~~~~~~~~~~~~~~~~l~ 114 (306)
-..+.....+|+.++-.+. +++|+|++. +|+.....+-..++
T Consensus 110 ~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~ 186 (270)
T PF07942_consen 110 YPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIE 186 (270)
T ss_pred ecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHH
Confidence 0123444445555543333 699999985 56766677888999
Q ss_pred HHhhcccCCeEEE
Q 021852 115 ARDKWLVDDGIVL 127 (306)
Q Consensus 115 ~~~~~L~p~G~~i 127 (306)
.+.++|||||..|
T Consensus 187 tI~~lLkpgG~WI 199 (270)
T PF07942_consen 187 TIEHLLKPGGYWI 199 (270)
T ss_pred HHHHHhccCCEEE
Confidence 9999999999877
No 217
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.37 E-value=6.7e-06 Score=68.46 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHh-cc---cCCCCCEEEEEcCCCc----HHHHHHHH---cCC---CEEEEEech-HHHHHHHHHH---
Q 021852 4 DVVRTKSYQNVIYQ-NK---FLFKDKVVLDVGAGTG----ILSLFCAK---AGA---AHVYAVECS-QMANMAKQIV--- 65 (306)
Q Consensus 4 D~~R~~~~~~ai~~-~~---~~~~~~~VLDlG~G~G----~l~~~~a~---~g~---~~v~~iD~s-~~~~~a~~~~--- 65 (306)
|..--+.+.+.+.. .. ...+.-+|+..||+|| .+++.+.+ ... -+|+|.|+| .+++.|++-.
T Consensus 8 d~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~ 87 (196)
T PF01739_consen 8 DPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPE 87 (196)
T ss_dssp TTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEG
T ss_pred CHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCH
Confidence 33444555555551 11 1224569999999999 45566655 112 289999999 8888887621
Q ss_pred -----------HHc-------------CCCCeEEEEEceeeeecCCCceeeEEEEc-ccccccCCcchHHHHHHHHhhcc
Q 021852 66 -----------EAN-------------GFSNVITVLKGKIEEIELPVTKVDIIISE-WMGYFLLFENMLNTVLYARDKWL 120 (306)
Q Consensus 66 -----------~~~-------------~~~~~v~~~~~d~~~~~~~~~~~D~iv~~-~~~~~~~~~~~~~~~l~~~~~~L 120 (306)
++. .+.++|+|.+.|+.+...+.+.||+|+|- .+.|+ .+.....+++.+.+.|
T Consensus 88 ~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L 165 (196)
T PF01739_consen 88 RSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSL 165 (196)
T ss_dssp GGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS---HHHHHHHHHHHGGGE
T ss_pred HHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHc
Confidence 000 01246888888887732345899999995 44333 5566788999999999
Q ss_pred cCCeEEE
Q 021852 121 VDDGIVL 127 (306)
Q Consensus 121 ~p~G~~i 127 (306)
+|||.++
T Consensus 166 ~pgG~L~ 172 (196)
T PF01739_consen 166 KPGGYLF 172 (196)
T ss_dssp EEEEEEE
T ss_pred CCCCEEE
Confidence 9999998
No 218
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.36 E-value=1.6e-06 Score=76.95 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..+|.++|||||++|.++..+++.|+ +|+|||...|..... .+ ++|+.+..+......+.+.+|.++|++.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~----~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLM----DT---GQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhh----CC---CCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999999988 999999776654432 22 4688888887665432578999999874
Q ss_pred cccCCcchHHHHHHHHhhcccCC
Q 021852 101 YFLLFENMLNTVLYARDKWLVDD 123 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~ 123 (306)
..+..+.+-+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 23345556666777665
No 219
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.4e-06 Score=78.95 Aligned_cols=109 Identities=26% Similarity=0.266 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE- 85 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 85 (306)
.+.+...|.....+..++.++|+.||||.+++.+|+ ++++|+|+|++ +.++.|+++++.||++ +.+|+.+.++++-
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFP 445 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccc
Confidence 355666777777888899999999999999999998 48899999999 8999999999999996 6999999777653
Q ss_pred --CC--Cceee-EEEEcccccccCCcchHHHHHHHHhhcccCC
Q 021852 86 --LP--VTKVD-IIISEWMGYFLLFENMLNTVLYARDKWLVDD 123 (306)
Q Consensus 86 --~~--~~~~D-~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~ 123 (306)
+. .++=+ +++.++.- .+.-..++.+++++-.+-
T Consensus 446 sl~~~~~~~~~~v~iiDPpR-----~Glh~~~ik~l~~~~~~~ 483 (534)
T KOG2187|consen 446 SLLTPCCDSETLVAIIDPPR-----KGLHMKVIKALRAYKNPR 483 (534)
T ss_pred hhcccCCCCCceEEEECCCc-----ccccHHHHHHHHhccCcc
Confidence 11 12345 56666542 233345566554443343
No 220
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.33 E-value=3.5e-06 Score=80.33 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~ 98 (306)
.+..+||||||.|.+...+|+ .+...++|+|.. ..+..+.+.+...++. |+.++..++..+. +++.++|.|..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 467999999999999888888 456689999988 7666666677778884 6888888875432 5668899999864
Q ss_pred cccccCCc-----chHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFE-----NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~-----~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+.-.. -.-+.++..+.+.|+|||.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 44332111 123578888999999999985
No 221
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.32 E-value=2.2e-06 Score=70.78 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..++.+|.|+|||-+.++..+.+ .-+|+..|.-. .| + .++.+|+..+|++++++|++|.-+-
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------~n---~--~Vtacdia~vPL~~~svDv~VfcLS- 131 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------PN---P--RVTACDIANVPLEDESVDVAVFCLS- 131 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------SS---T--TEEES-TTS-S--TT-EEEEEEES--
T ss_pred cCCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------CC---C--CEEEecCccCcCCCCceeEEEEEhh-
Confidence 34567999999999999854432 22799999641 11 2 3677999999999999999997431
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
+ .-.++..++.++.|.|||||.+. ++.+.++
T Consensus 132 --L-MGTn~~~fi~EA~RvLK~~G~L~-------IAEV~SR 162 (219)
T PF05148_consen 132 --L-MGTNWPDFIREANRVLKPGGILK-------IAEVKSR 162 (219)
T ss_dssp -----SS-HHHHHHHHHHHEEEEEEEE-------EEEEGGG
T ss_pred --h-hCCCcHHHHHHHHheeccCcEEE-------EEEeccc
Confidence 1 22467889999999999999996 6666654
No 222
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.32 E-value=2.1e-06 Score=75.53 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCc----HHHHHHHHc-C----CCEEEEEech-HHHHHHHHHH------------------HH-----cC-
Q 021852 24 DKVVLDVGAGTG----ILSLFCAKA-G----AAHVYAVECS-QMANMAKQIV------------------EA-----NG- 69 (306)
Q Consensus 24 ~~~VLDlG~G~G----~l~~~~a~~-g----~~~v~~iD~s-~~~~~a~~~~------------------~~-----~~- 69 (306)
.-+|+..||+|| .+++.+.+. + .-+|+|+|+| .+++.|++-. .+ .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999 456666553 1 2379999999 8998887641 00 01
Q ss_pred ------CCCeEEEEEceeeeecCC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 ------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 ------~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...|+|...|+.+.+++ .+.||+|+|.-+..++ .......++..+.+.|+|||.++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~ 259 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLF 259 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 224577888887664332 4789999995332222 44567889999999999999987
No 223
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.6e-05 Score=72.50 Aligned_cols=114 Identities=20% Similarity=0.103 Sum_probs=85.2
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHcC---CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCce
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~g---~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~ 90 (306)
.....+|.+|||+.++.|.=+..+|+.. ...|+|+|.+ .-+...++++++.|+.+ +.+++.|...+. ...++
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCc
Confidence 3567889999999999998888888842 2367999999 78999999999999965 778888876543 22236
Q ss_pred eeEEEEcccccccCCc------------c-------hHHHHHHHHhhcccCCeEEEecCce
Q 021852 91 VDIIISEWMGYFLLFE------------N-------MLNTVLYARDKWLVDDGIVLPDKAS 132 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~------------~-------~~~~~l~~~~~~L~p~G~~ip~~~~ 132 (306)
||.|+.+...++..-. . .-..++.+..++|||||.++-+.|+
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9999998754432211 0 1236788888999999999944443
No 224
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.26 E-value=2.9e-06 Score=74.23 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+....+.|.+.....++..|||+|+|+|.++..+++.+ ++|+++|.+ .+++..++... -.++++++++|+.++..
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhcccc
Confidence 34455556555566689999999999999999999987 799999999 88888887654 22579999999988875
Q ss_pred CC---ceeeEEEEccc
Q 021852 87 PV---TKVDIIISEWM 99 (306)
Q Consensus 87 ~~---~~~D~iv~~~~ 99 (306)
+. .....|+++..
T Consensus 91 ~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLP 106 (262)
T ss_dssp GGHCSSSEEEEEEEET
T ss_pred HHhhcCCceEEEEEec
Confidence 52 36778888864
No 225
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.24 E-value=3.9e-06 Score=74.02 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=63.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCC--cee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPV--TKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~--~~~ 91 (306)
....++.+++|.+||.|..+..+++.. ..+|+|+|.+ ++++.|++.+.. .+++++++++..++. ++. .++
T Consensus 15 L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 15 LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 445678899999999999999999853 4699999999 899999988754 368999999998764 222 279
Q ss_pred eEEEEcc
Q 021852 92 DIIISEW 98 (306)
Q Consensus 92 D~iv~~~ 98 (306)
|.|+.+.
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999874
No 226
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.20 E-value=7.1e-06 Score=71.32 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCc----HHHHHHHHcC------CCEEEEEech-HHHHHHHHHHHH-----cC-----------------
Q 021852 23 KDKVVLDVGAGTG----ILSLFCAKAG------AAHVYAVECS-QMANMAKQIVEA-----NG----------------- 69 (306)
Q Consensus 23 ~~~~VLDlG~G~G----~l~~~~a~~g------~~~v~~iD~s-~~~~~a~~~~~~-----~~----------------- 69 (306)
..-+|+-.||+|| .+++.+.+.+ .-+|+|.|+| .+++.|++-+-. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3579999999999 5566666643 2389999999 888888652110 11
Q ss_pred ------CCCeEEEEEceeeeecCCCceeeEEEE-cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 ------FSNVITVLKGKIEEIELPVTKVDIIIS-EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 ------~~~~v~~~~~d~~~~~~~~~~~D~iv~-~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...|.|...|+.+-....+.||+|+| |.+.|+ .+..-..++......|+|||.++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~Lf 238 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLF 238 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEE
Confidence 112355555555443312377999999 455443 55667789999999999999997
No 227
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.20 E-value=5.7e-06 Score=70.04 Aligned_cols=90 Identities=16% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
....+|.|+|||-+.++. . -...|+..|.-. -+-.++.+|+.+++++++++|++|.-+ +
T Consensus 179 ~~~~vIaD~GCGEakiA~---~-~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CL--S 237 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---S-ERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCL--S 237 (325)
T ss_pred cCceEEEecccchhhhhh---c-cccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeH--h
Confidence 456799999999988765 2 133799988631 124678899999999999999999732 1
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
+ .-.++..++.++.|.|++||.+. ++.+.+.
T Consensus 238 -L-Mgtn~~df~kEa~RiLk~gG~l~-------IAEv~SR 268 (325)
T KOG3045|consen 238 -L-MGTNLADFIKEANRILKPGGLLY-------IAEVKSR 268 (325)
T ss_pred -h-hcccHHHHHHHHHHHhccCceEE-------EEehhhh
Confidence 1 12467789999999999999985 6666653
No 228
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.18 E-value=1.4e-05 Score=71.76 Aligned_cols=113 Identities=20% Similarity=0.138 Sum_probs=70.2
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc--------CCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEI 84 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~--------g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~ 84 (306)
+.+.....++.+|+|-.||+|.+...+.+. ...+++|+|++ .++..|+-++.-++... +..+..+|....
T Consensus 38 ~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~ 117 (311)
T PF02384_consen 38 MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN 117 (311)
T ss_dssp HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS
T ss_pred HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc
Confidence 333334556779999999999998877662 45589999999 78888887776666543 245777776443
Q ss_pred cCC--CceeeEEEEccccccc--CCc----------------chHHHHHHHHhhcccCCeEEE
Q 021852 85 ELP--VTKVDIIISEWMGYFL--LFE----------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~--~~~~D~iv~~~~~~~~--~~~----------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. ..+||+|+++++.... ... ..--.++....+.|++||++.
T Consensus 118 ~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 118 DKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp HSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 322 3689999999742222 000 011146667779999999865
No 229
>PRK10742 putative methyltransferase; Provisional
Probab=98.16 E-value=1.8e-05 Score=67.56 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=66.8
Q ss_pred HHHhcccCCCCC--EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc------C--CCCeEEEEEceee
Q 021852 14 VIYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN------G--FSNVITVLKGKIE 82 (306)
Q Consensus 14 ai~~~~~~~~~~--~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~------~--~~~~v~~~~~d~~ 82 (306)
.|.++..+.+|. +|||+-+|+|..++.++..|++ |+++|.+ .++...++.+++. + +..+++++++|..
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 344444566777 9999999999999999999985 9999998 6777777777763 2 2257999999987
Q ss_pred eecC-CCceeeEEEEccccc
Q 021852 83 EIEL-PVTKVDIIISEWMGY 101 (306)
Q Consensus 83 ~~~~-~~~~~D~iv~~~~~~ 101 (306)
++.- ...+||+|+.++|..
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred HHHhhCCCCCcEEEECCCCC
Confidence 7531 124799999998743
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.15 E-value=1.1e-05 Score=63.76 Aligned_cols=75 Identities=21% Similarity=0.397 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-----cCCCEEEEEech-HHHHHHHHHHHHcC--CCCeEEEEEceeeeecCCCceee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-----AGAAHVYAVECS-QMANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-----~g~~~v~~iD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
..+..+|+|+|||.|.+++.++. ....+|+++|.+ ...+.+++..++.+ +..++++..++..+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 36778999999999999999998 545699999988 88888888887776 54567777766654432 36677
Q ss_pred EEEE
Q 021852 93 IIIS 96 (306)
Q Consensus 93 ~iv~ 96 (306)
++++
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 7776
No 231
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.13 E-value=2.1e-05 Score=69.21 Aligned_cols=77 Identities=26% Similarity=0.285 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCc-HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEEceeeeec-----CCCceeeEE
Q 021852 24 DKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLKGKIEEIE-----LPVTKVDII 94 (306)
Q Consensus 24 ~~~VLDlG~G~G-~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~-----~~~~~~D~i 94 (306)
..++||||||.. +..+..++ .|. +++|.|++ ..++.|++++++| ++.++|+++...-.... .+.+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 568999999974 66777766 455 99999999 8999999999999 99999999876533221 234789999
Q ss_pred EEccccc
Q 021852 95 ISEWMGY 101 (306)
Q Consensus 95 v~~~~~~ 101 (306)
+|++..|
T Consensus 182 mCNPPFy 188 (299)
T PF05971_consen 182 MCNPPFY 188 (299)
T ss_dssp EE-----
T ss_pred ecCCccc
Confidence 9998643
No 232
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.10 E-value=3.3e-06 Score=78.11 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcccC--CCC--CEEEEEcCCCcHHHHHHHHcCCCEEEEEec---h-HHHHHHHHHHHHcCCCCeEEEEEc
Q 021852 8 TKSYQNVIYQNKFL--FKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVEC---S-QMANMAKQIVEANGFSNVITVLKG 79 (306)
Q Consensus 8 ~~~~~~ai~~~~~~--~~~--~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~---s-~~~~~a~~~~~~~~~~~~v~~~~~ 79 (306)
...|.+.|.+.... ..+ .++||+|||+|.++..+...+. .+..+-. . ..+..|.+ .|++.-+.+ .
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~--~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGV--L 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhh--h
Confidence 45677777766544 223 4899999999999999988765 3333322 2 23444433 355332221 1
Q ss_pred eeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEE
Q 021852 80 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 134 (306)
Q Consensus 80 d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~ 134 (306)
-...+++|...||+|.|.-... .....-..++-++.|+|+|||.++-+...++
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i--~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLI--PWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccCCccchhhhhcccccc--cchhcccceeehhhhhhccCceEEecCCccc
Confidence 2456888999999999853211 1111112467788999999999996655555
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.09 E-value=1.4e-05 Score=63.06 Aligned_cols=57 Identities=32% Similarity=0.465 Sum_probs=49.4
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 26 VVLDVGAGTGILSLFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
++||+|||.|.+++.+++.+.. +|+++|.+ .+.+.++++++.|+++ ++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999999987654 89999998 8999999999999885 48888877654
No 234
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.08 E-value=2e-05 Score=69.89 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=86.6
Q ss_pred HHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHH--HH---HcCCC-CeEEEEEce
Q 021852 11 YQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQI--VE---ANGFS-NVITVLKGK 80 (306)
Q Consensus 11 ~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~--~~---~~~~~-~~v~~~~~d 80 (306)
|.+.+..- ..+..-.+||-+|.|-|.....+.+.+ ..+++-+|.+ +|++.++++ ++ .+.+. .+++++..|
T Consensus 275 YhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD 354 (508)
T COG4262 275 YHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD 354 (508)
T ss_pred hhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence 55555421 112445689999999999999999976 7799999999 899999843 22 22233 589999999
Q ss_pred eeeec-CCCceeeEEEEcccccccCCcc--hHHHHHHHHhhcccCCeEEEecCceEEEE
Q 021852 81 IEEIE-LPVTKVDIIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLT 136 (306)
Q Consensus 81 ~~~~~-~~~~~~D~iv~~~~~~~~~~~~--~~~~~l~~~~~~L~p~G~~ip~~~~~~~~ 136 (306)
+.++. -..+.||.||.+..+..-.... --..+..-+.+.|+++|.++.+..+.|..
T Consensus 355 Af~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t 413 (508)
T COG4262 355 AFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT 413 (508)
T ss_pred HHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC
Confidence 98764 2346899999976543221111 11245556678999999999665554443
No 235
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.05 E-value=3.5e-05 Score=63.59 Aligned_cols=99 Identities=23% Similarity=0.362 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC--CeEEEEEceeeeec--CCCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS--NVITVLKGKIEEIE--LPVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~--~~~~~~D~iv~ 96 (306)
.+|.+||.+|-|-|+..-.+.++...+=+.||.. +.++..++ +|+. ++|.++.+.+++.. ++++.||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhccccccCcceeEe
Confidence 7899999999999999998888776677788987 77766554 4543 57888999888754 66788999997
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+ -++ .++..+.+.+.++|||+|++-
T Consensus 176 DTy~--e~y-Edl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 176 DTYS--ELY-EDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred echh--hHH-HHHHHHHHHHhhhcCCCceEE
Confidence 6531 223 345557777889999999975
No 236
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.02 E-value=3.2e-05 Score=68.36 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=81.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
....++..|||+.++.|.=+..+++ .+ ...|+|.|.+ .-+...++++++.|.. ++.++..|..... .....||.
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccch
Confidence 4567889999999999999888887 33 5699999998 8899999999999985 5778878877662 23346999
Q ss_pred EEEcccccccC--C-cc----------------hHHHHHHHHhhcc----cCCeEEE
Q 021852 94 IISEWMGYFLL--F-EN----------------MLNTVLYARDKWL----VDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~--~-~~----------------~~~~~l~~~~~~L----~p~G~~i 127 (306)
|+.+...++.. . .+ .-..+++...+++ +|||+++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 99986544431 0 01 1126677788999 9999998
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.00 E-value=3.5e-06 Score=63.03 Aligned_cols=98 Identities=22% Similarity=0.342 Sum_probs=43.1
Q ss_pred EEEcCCCcHHHHHHHHc----CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEccccc
Q 021852 28 LDVGAGTGILSLFCAKA----GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGY 101 (306)
Q Consensus 28 LDlG~G~G~l~~~~a~~----g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~ 101 (306)
||+|+..|..++.+++. +..+++++|..+..+.+++.+++.++.++++++.++..+.. ++.+++|+++.+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888777662 22379999987435556666666777778999999987642 33478999998742
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+........+..+.+.|+|||+++.+
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 11234445566777899999999843
No 238
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.00 E-value=0.00016 Score=60.54 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=71.1
Q ss_pred HHHHHHHHh---cccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 9 KSYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 9 ~~~~~ai~~---~~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
.....+|.. ...+.+|.+||-+|+.+|.-...++. .| ...|||+|.| ...+..-..+++. .||-.+-.|++
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCC
Confidence 455666653 35678899999999999998888888 45 5699999988 4433333333333 35666777876
Q ss_pred eec---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... .--+.+|+|+++.. .......+...+..+||+||.++
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEE
Confidence 432 11368999999742 33556667777888999999986
No 239
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.93 E-value=1.3e-05 Score=66.28 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~~ 97 (306)
...+|+|.-||.|.-++..|..+. .|++||++ .-+..|+++++-.|++++|+|+++|+.++- +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 556899999999988888888766 99999999 789999999999999999999999987653 344567888876
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCe
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDG 124 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G 124 (306)
+... +.+-+..-+..+..+++|.|
T Consensus 173 ppwg---gp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 173 PPWG---GPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCC---CcchhhhhhhhhhhhcchhH
Confidence 4322 22222323333445555554
No 240
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.86 E-value=9e-05 Score=71.39 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC---------CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAG---------AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 87 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g---------~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 87 (306)
...+|||.|||+|.+...+++.. ..+++|+|++ ..+..++.++...+. ..+.+...+..... -.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999988887621 1478999999 888999888876651 13455555533211 01
Q ss_pred CceeeEEEEccc
Q 021852 88 VTKVDIIISEWM 99 (306)
Q Consensus 88 ~~~~D~iv~~~~ 99 (306)
.++||+||+||+
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999985
No 241
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=9.8e-06 Score=63.79 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=79.2
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCC-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCC--CeEEEEEceeeee
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFS--NVITVLKGKIEEI 84 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~ 84 (306)
+..-.+.+......|.+||++|.| +|+.++++|. +..+.|...|-+ +.++..++....|..+ .++.++.-+....
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a 95 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA 95 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh
Confidence 344445544555667899999999 5788888887 667789999977 7888888877766432 2343443333221
Q ss_pred c--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .....||+|++.- +++.......+.+.+.++|+|.|.-+
T Consensus 96 qsq~eq~tFDiIlaAD---ClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 96 QSQQEQHTFDIILAAD---CLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HHHHhhCcccEEEecc---chhHHHHHHHHHHHHHHHhCccccee
Confidence 1 2345899999963 34444566788899999999999854
No 242
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.85 E-value=0.00032 Score=58.45 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
.|-.+..+.+. .+.+++|+||-.|.++..+.+. .+..+++.|++ .-++.|.+++.++++.+++++..+|...
T Consensus 5 ~RL~~va~~V~------~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~ 78 (226)
T COG2384 5 KRLTTVANLVK------QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA 78 (226)
T ss_pred HHHHHHHHHHH------cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence 34455555544 4556999999999999999984 47799999998 8899999999999999999999999854
Q ss_pred ecCCCceeeEEEEcccccccCCcchHHHHHHHHhhccc
Q 021852 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 121 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~ 121 (306)
.--+++.+|+|+...||- .....++.+....|+
T Consensus 79 ~l~~~d~~d~ivIAGMGG-----~lI~~ILee~~~~l~ 111 (226)
T COG2384 79 VLELEDEIDVIVIAGMGG-----TLIREILEEGKEKLK 111 (226)
T ss_pred ccCccCCcCEEEEeCCcH-----HHHHHHHHHhhhhhc
Confidence 433445899998865533 344556666555554
No 243
>PHA01634 hypothetical protein
Probab=97.84 E-value=8.2e-05 Score=56.23 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=56.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..++++|+|||++-|..++..+..||++|+++|.+ .+.+..+++++.+.+-++..-.. + ++-.-+.+|+.+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-e---W~~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-E---WNGEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-c---ccccCCCcceEEEE
Confidence 45789999999999999999999999999999999 78889999888775543332222 2 22233678988864
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.77 E-value=8.3e-05 Score=57.92 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=56.3
Q ss_pred EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcccccccCCcc-------hHHHHHHHHh
Q 021852 48 HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFEN-------MLNTVLYARD 117 (306)
Q Consensus 48 ~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~~~-------~~~~~l~~~~ 117 (306)
+|+|.|+- +.++.++++++..++.+++++++.+-+.+. ++.+++|+++.|. ||...+.. .--..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999998 899999999999999889999998887765 3434899999984 66443322 1124566677
Q ss_pred hcccCCeEEE
Q 021852 118 KWLVDDGIVL 127 (306)
Q Consensus 118 ~~L~p~G~~i 127 (306)
++|+|||+++
T Consensus 80 ~lL~~gG~i~ 89 (140)
T PF06962_consen 80 ELLKPGGIIT 89 (140)
T ss_dssp HHEEEEEEEE
T ss_pred HhhccCCEEE
Confidence 8999999986
No 245
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.76 E-value=0.00031 Score=61.77 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
.......+|||+|||+|.....+.. . ...+++++|.| .|++.++..++...-............+. .+..+.|+|+
T Consensus 29 ~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~DLvi 107 (274)
T PF09243_consen 29 LPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF-LPFPPDDLVI 107 (274)
T ss_pred CcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc-ccCCCCcEEE
Confidence 3456678999999999976655554 2 35589999999 89999988765432211111111111111 1223449999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccC
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVD 122 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p 122 (306)
+.-+..-+.. .....+++.+.+.+.+
T Consensus 108 ~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 108 ASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred EehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 8644333433 4555666666666655
No 246
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.73 E-value=0.00052 Score=53.83 Aligned_cols=95 Identities=26% Similarity=0.369 Sum_probs=63.1
Q ss_pred EEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee--ecCCC-ceeeEEEEcccc
Q 021852 27 VLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE--IELPV-TKVDIIISEWMG 100 (306)
Q Consensus 27 VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~~D~iv~~~~~ 100 (306)
++|+|||+|... .+++... ..++++|.+ .++..++......+. ..+.+...+... +++.. ..+|++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999877 4444322 389999988 777775444332221 116777777766 55554 489999443221
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. . ....+..+.+.++|+|.++
T Consensus 130 ~~~---~-~~~~~~~~~~~l~~~g~~~ 152 (257)
T COG0500 130 HLL---P-PAKALRELLRVLKPGGRLV 152 (257)
T ss_pred hcC---C-HHHHHHHHHHhcCCCcEEE
Confidence 111 1 6778888889999999887
No 247
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.00017 Score=58.26 Aligned_cols=98 Identities=22% Similarity=0.328 Sum_probs=62.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEc-eeeeec--------CC
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIE--------LP 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~--------~~ 87 (306)
.-+.|+.+|||+||..|.++..+.+. +...|.|+|+-... .. ..++++.+ |+++.. +|
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PP-EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CC-CCcccccccccCCHHHHHHHHHhCC
Confidence 44678999999999999999999883 56689999964210 11 12445544 444321 56
Q ss_pred CceeeEEEEcccccccC-----CcchH---HHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLL-----FENML---NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~-----~~~~~---~~~l~~~~~~L~p~G~~i 127 (306)
+.++|+|+|++...... +.... .+++.-...+++|+|.++
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 78999999987543211 11111 122333346788999886
No 248
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.69 E-value=0.00045 Score=60.28 Aligned_cols=102 Identities=17% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCcHH-HHHHHH-cC-CCEEEEEech-HHHHHHHHHHH-HcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 24 DKVVLDVGAGTGIL-SLFCAK-AG-AAHVYAVECS-QMANMAKQIVE-ANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 24 ~~~VLDlG~G~G~l-~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.++|+=||||.=.+ ++.+++ .+ ...|+++|++ +.++.+++.++ ..+++.+++++.+|..+....-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999998655 555665 33 3479999999 89999998887 66788889999999987764446899988754
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+- .........++..+.+.++||+.++
T Consensus 201 lV--g~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 201 LV--GMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp T---S----SHHHHHHHHHHHS-TTSEEE
T ss_pred hc--ccccchHHHHHHHHHhhCCCCcEEE
Confidence 21 1123366789999999999999987
No 249
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.68 E-value=8.6e-05 Score=67.48 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=84.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++..++|+|||-|..+...+..+...+++++.+ -.+..+.......++.++..++.+++...++++..||.+-+.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 3456777999999999999999999777799999987 556666555555566666667888888888888999999874
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
- ...+.+....++.++.+.++|||..+
T Consensus 186 d---~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 186 E---VVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred e---ecccCCcHHHHHHHHhcccCCCceEE
Confidence 3 24456788899999999999999987
No 250
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.67 E-value=0.00018 Score=62.20 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=64.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC---------------------------C
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF---------------------------S 71 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~---------------------------~ 71 (306)
...+|.++||||||+-+.....|..-+.+++..|.+ ...+..++-++..+. .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 345688999999999777555555447789999977 555444443322110 0
Q ss_pred CeE-EEEEceeeeec-CCC-----ceeeEEEEcccccc-cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 72 NVI-TVLKGKIEEIE-LPV-----TKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 72 ~~v-~~~~~d~~~~~-~~~-----~~~D~iv~~~~~~~-~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..| .++.+|+.... +.. .++|+|++...... ..........++.+.++|||||.+|
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 112 36777876543 221 35999998543222 2244566677888889999999998
No 251
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00038 Score=54.14 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+..+.+|+|+|-|.+.+.+++.|...-+|+|.+ -.+.+++-..-+.|+..+..|...|+...++.+-.+-+|+.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg---- 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG---- 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee----
Confidence 4456899999999999999999998899999988 57788887777889988899999999887765434433332
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|..++.+-+.+..-+..+..++
T Consensus 147 ----aes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 147 ----AESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred ----hHHHHhhhHHHHHhhCcCCCeEE
Confidence 44566666666666677777776
No 252
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.62 E-value=0.0012 Score=59.11 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=71.6
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----c-CCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeee
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEE 83 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~ 83 (306)
+...|. ..+.++.+++|+|||+|.=+..+.+ . ...+++++|+| ++++.+.+.+....++. .+.-+.+|.++
T Consensus 66 ~~~~Ia--~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 66 HSSDIA--ASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHH--HhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 334444 2356778999999999966444333 2 13479999999 89999988887444432 23447777755
Q ss_pred ec--CC----CceeeEEEEcccccccCC--cchHHHHHHHHhh-cccCCeEEE
Q 021852 84 IE--LP----VTKVDIIISEWMGYFLLF--ENMLNTVLYARDK-WLVDDGIVL 127 (306)
Q Consensus 84 ~~--~~----~~~~D~iv~~~~~~~~~~--~~~~~~~l~~~~~-~L~p~G~~i 127 (306)
.. ++ .....+++. +|+.+.+ ......+++.+.+ .|+||+.++
T Consensus 144 ~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred HHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 31 11 123456665 3333322 2344577888888 999999886
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0013 Score=54.10 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=75.7
Q ss_pred HHHHHHHHh---cccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 9 KSYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 9 ~~~~~ai~~---~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
.....+|.. +..+.+|++||=+|+.+|--.-..+. .|...+||+|.| .+....-..+++. +|+--+..|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 445566653 35678899999999999988878877 676789999987 4333322333222 346666677754
Q ss_pred ec---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. .--+.+|+|+.+.. -.....-+...+..+|++||.++
T Consensus 136 P~~Y~~~Ve~VDviy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~ 177 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA-----QPNQAEILADNAEFFLKKGGYVV 177 (231)
T ss_pred cHHhhhhcccccEEEEecC-----CchHHHHHHHHHHHhcccCCeEE
Confidence 32 11367999998742 33455666777889999999765
No 254
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.58 E-value=0.00041 Score=61.73 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
-...+|+|.|.|.++..+.. -..+|-+++.+ +.+..++..+. .| |+.+.+|+..- .| +.|+|+.-|+.+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P--~~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP--KGDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC--CcCeEEEEeeccc
Confidence 37999999999999888887 45689999988 66555555543 33 67777887654 33 4679999998777
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. .+.-.+++.+..-|+|+|.++
T Consensus 249 wtD-edcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 249 WTD-EDCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred CCh-HHHHHHHHHHHHhCCCCCEEE
Confidence 744 456679999999999999987
No 255
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.49 E-value=4.4e-05 Score=65.81 Aligned_cols=96 Identities=18% Similarity=0.076 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..+..++|+|||.|-.... .+...++++|.+ ..+..+++. +...+..+|+..++.+..+||..++-.+.
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 3488999999999865321 134479999988 777777653 22257778999988888999999998888
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++....--..++++..|.|+|||..+
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 888877777889999999999999865
No 256
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.49 E-value=0.00056 Score=62.74 Aligned_cols=98 Identities=24% Similarity=0.260 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeeecC-CCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEIEL-PVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~~D~iv~~ 97 (306)
++.+|||.=+|+|.=++..++ .+..+|++-|+| +.++.++++++.|++++ ++++.+.|+..+.. ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 456999999999999988887 467799999999 89999999999999987 79999999887641 35899999998
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++|+ ...+++.+.+.++.||.+.
T Consensus 129 PfGS-------p~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 129 PFGS-------PAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp -SS---------HHHHHHHHHHEEEEEEEE
T ss_pred CCCC-------ccHhHHHHHHHhhcCCEEE
Confidence 8643 3457788888899999986
No 257
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.45 E-value=0.0013 Score=59.70 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=82.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D 92 (306)
....+|.+|||+.+-.|.=+...|. .+-..|+|.|.+ +-+...+.++.+.|+. +..+.+.|..+++ ++ ++||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~-~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFP-GSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccC-cccc
Confidence 4557899999999999877666555 345589999998 8899999999999985 4667777776554 45 3899
Q ss_pred EEEEcccccc--cCCc-----------------chHHHHHHHHhhcccCCeEEEecCceE
Q 021852 93 IIISEWMGYF--LLFE-----------------NMLNTVLYARDKWLVDDGIVLPDKASL 133 (306)
Q Consensus 93 ~iv~~~~~~~--~~~~-----------------~~~~~~l~~~~~~L~p~G~~ip~~~~~ 133 (306)
-|+.+...++ +... +.-..++..+..++++||+++-+.+++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9998765554 2111 122356666678999999999555543
No 258
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.38 E-value=6.5e-05 Score=61.65 Aligned_cols=105 Identities=26% Similarity=0.270 Sum_probs=67.9
Q ss_pred HHHHHHHHhcccC--CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFL--FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~--~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
+.|++.+...... ..+.++||+|+|.|-++...+.. ..+|||.|.| .|....++. +. +.+..+ ++.
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y-nVl~~~-----ew~ 164 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY-NVLTEI-----EWL 164 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC-ceeeeh-----hhh
Confidence 4566666533221 23579999999999999888875 5589999999 787766543 33 222222 111
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccC-CeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD-DGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p-~G~~i 127 (306)
-.+-++|+|.|--+ +...-+.-.+++.+...|+| +|++|
T Consensus 165 ~t~~k~dli~clNl---LDRc~~p~kLL~Di~~vl~psngrvi 204 (288)
T KOG3987|consen 165 QTDVKLDLILCLNL---LDRCFDPFKLLEDIHLVLAPSNGRVI 204 (288)
T ss_pred hcCceeehHHHHHH---HHhhcChHHHHHHHHHHhccCCCcEE
Confidence 12357999998321 22223445678888888988 88877
No 259
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0043 Score=54.39 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhcccCCC-------CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEE-
Q 021852 5 VVRTKSYQNVIYQNKFLFK-------DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVIT- 75 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~~~-------~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~- 75 (306)
..|...|...|.....+.+ ..+||--|||.|.|+.-+|..|. .+-|=|.| -|+-...=.+..-..++.++
T Consensus 125 ~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~I 203 (369)
T KOG2798|consen 125 RERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTI 203 (369)
T ss_pred hhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEE
Confidence 3566777777765444333 46899999999999999999887 67777888 66544332222112222222
Q ss_pred --EEEc------------------------------------eeeeecCC---CceeeEEEEcccccccCCcchHHHHHH
Q 021852 76 --VLKG------------------------------------KIEEIELP---VTKVDIIISEWMGYFLLFENMLNTVLY 114 (306)
Q Consensus 76 --~~~~------------------------------------d~~~~~~~---~~~~D~iv~~~~~~~~~~~~~~~~~l~ 114 (306)
+++. |..+.--. .+.+|+|+.. +|....+..-..++
T Consensus 204 YPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc---fFIDTa~NileYi~ 280 (369)
T KOG2798|consen 204 YPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC---FFIDTAHNILEYID 280 (369)
T ss_pred EeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE---EEeechHHHHHHHH
Confidence 2222 11111100 2369999986 44555566777899
Q ss_pred HHhhcccCCeEEE
Q 021852 115 ARDKWLVDDGIVL 127 (306)
Q Consensus 115 ~~~~~L~p~G~~i 127 (306)
.+.+.|+|||+.|
T Consensus 281 tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 281 TIYKILKPGGVWI 293 (369)
T ss_pred HHHHhccCCcEEE
Confidence 9999999999987
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.23 E-value=0.0081 Score=51.09 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=61.7
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--CceeeE
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDI 93 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~ 93 (306)
......|++||-+|-+- +.|+.+|. ...++|+.+|++ .+++..++.+++.|++ |+.++.|+.+--.+ .++||+
T Consensus 39 ~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 39 ERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp HTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSE
T ss_pred hcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCE
Confidence 34556799999999766 55666655 346799999999 8999999999999994 99999998764211 379999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGI 125 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~ 125 (306)
++++++ +.. .-+..++......||..|.
T Consensus 116 f~TDPP-yT~---~G~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 116 FFTDPP-YTP---EGLKLFLSRGIEALKGEGC 143 (243)
T ss_dssp EEE----SSH---HHHHHHHHHHHHTB-STT-
T ss_pred EEeCCC-CCH---HHHHHHHHHHHHHhCCCCc
Confidence 999985 322 4566777777778887663
No 261
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.16 E-value=0.0029 Score=54.05 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.|.+.+.. ...+..+|+|||||.=.+++..... ....++|+|++ .+++...+.+...+.. .++...|...-. +
T Consensus 94 ~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-~ 168 (251)
T PF07091_consen 94 EFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-P 168 (251)
T ss_dssp HHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-T
T ss_pred HHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-C
Confidence 34444442 3455789999999999998876653 33499999999 8999999998888874 566666765544 4
Q ss_pred CceeeEEEE
Q 021852 88 VTKVDIIIS 96 (306)
Q Consensus 88 ~~~~D~iv~ 96 (306)
....|+.+.
T Consensus 169 ~~~~DlaLl 177 (251)
T PF07091_consen 169 KEPADLALL 177 (251)
T ss_dssp TSEESEEEE
T ss_pred CCCcchhhH
Confidence 578999886
No 262
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.14 E-value=0.0037 Score=54.15 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCC--cHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C---------
Q 021852 23 KDKVVLDVGAGT--GILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L--------- 86 (306)
Q Consensus 23 ~~~~VLDlG~G~--G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--------- 86 (306)
.-...||||||- -...-..|+ .+.++|.-+|++ -.+..++..+..+.- .+..++.+|+.+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 336899999993 223444444 566799999999 567778887766542 35899999987653 1
Q ss_pred -CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 -PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 -~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-+.++=+++...+ +++..+.....++..+...|.||..++
T Consensus 147 D~~rPVavll~~vL-h~v~D~~dp~~iv~~l~d~lapGS~L~ 187 (267)
T PF04672_consen 147 DFDRPVAVLLVAVL-HFVPDDDDPAGIVARLRDALAPGSYLA 187 (267)
T ss_dssp -TTS--EEEECT-G-GGS-CGCTHHHHHHHHHCCS-TT-EEE
T ss_pred CCCCCeeeeeeeee-ccCCCccCHHHHHHHHHHhCCCCceEE
Confidence 1356667776654 666676788899999999999999987
No 263
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.13 E-value=0.00025 Score=61.46 Aligned_cols=97 Identities=26% Similarity=0.334 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCcHHHH-HHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~-~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+.+|.|+-+|-|.+++ .+..+||+.|+|+|.+ ..++..+++++.|+..++..++++|-+... +...+|-|...++.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~~~~AdrVnLGLlP 272 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-PRLRADRVNLGLLP 272 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-ccccchheeecccc
Confidence 35789999999999999 8889999999999998 899999999999998888889999888765 44789988876543
Q ss_pred cccCCcchHHHHHHHHhhcccCCeE-EE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGI-VL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~-~i 127 (306)
..+..++... +.|+|.|- ++
T Consensus 273 ---Sse~~W~~A~----k~Lk~eggsil 293 (351)
T KOG1227|consen 273 ---SSEQGWPTAI----KALKPEGGSIL 293 (351)
T ss_pred ---ccccchHHHH----HHhhhcCCcEE
Confidence 3455566544 45666544 44
No 264
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.07 E-value=0.0045 Score=54.94 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=63.7
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCce
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~ 90 (306)
.....++..++|.=+|.|.-+..+++. +..+|+|+|.+ .++..+++.++.. .+++++++++..++. .+..+
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCc
Confidence 344567889999999999999988874 44799999999 8999998887654 468999999988764 23357
Q ss_pred eeEEEEcc
Q 021852 91 VDIIISEW 98 (306)
Q Consensus 91 ~D~iv~~~ 98 (306)
+|.|+.+.
T Consensus 93 vDgIl~DL 100 (305)
T TIGR00006 93 IDGILVDL 100 (305)
T ss_pred ccEEEEec
Confidence 99999874
No 265
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.05 E-value=0.001 Score=58.92 Aligned_cols=80 Identities=24% Similarity=0.248 Sum_probs=63.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHH-------HHHHHHHHcCCCC-eEEEEEceeeeecC-CC
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMAN-------MAKQIVEANGFSN-VITVLKGKIEEIEL-PV 88 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~-------~a~~~~~~~~~~~-~v~~~~~d~~~~~~-~~ 88 (306)
..+.+|+.|+|---|||.+...+|..|+ .|+|.|++ .++. ..+.+++..|.++ -+.++.+|...-++ ..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4578999999999999999999999988 99999999 7765 3466777777543 36777888776543 24
Q ss_pred ceeeEEEEccc
Q 021852 89 TKVDIIISEWM 99 (306)
Q Consensus 89 ~~~D~iv~~~~ 99 (306)
..||.|||++.
T Consensus 283 ~~fDaIvcDPP 293 (421)
T KOG2671|consen 283 LKFDAIVCDPP 293 (421)
T ss_pred ceeeEEEeCCC
Confidence 68999999974
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.02 E-value=0.0023 Score=54.38 Aligned_cols=86 Identities=23% Similarity=0.192 Sum_probs=49.9
Q ss_pred HHhcccCCCCC--EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHH---HHHHHcCCC-----CeEEEEEceeee
Q 021852 15 IYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAK---QIVEANGFS-----NVITVLKGKIEE 83 (306)
Q Consensus 15 i~~~~~~~~~~--~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~---~~~~~~~~~-----~~v~~~~~d~~~ 83 (306)
+.++..+.++. +|||.=+|-|.=++.+|..|+ +|+++|.| -+....+ +++...... .+++++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 33344455553 999999999999999998887 89999988 3333332 333332221 489999999987
Q ss_pred ec-CCCceeeEEEEccccc
Q 021852 84 IE-LPVTKVDIIISEWMGY 101 (306)
Q Consensus 84 ~~-~~~~~~D~iv~~~~~~ 101 (306)
+. .+..++|+|..++|..
T Consensus 144 ~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp HCCCHSS--SEEEE--S--
T ss_pred HHhhcCCCCCEEEECCCCC
Confidence 53 3458999999999843
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.01 E-value=0.0039 Score=51.96 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEE
Q 021852 3 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITV 76 (306)
Q Consensus 3 ~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~ 76 (306)
+...-+-+|++.|-+ .++++|+++|.-.|.-+++.|. . +.++|+++|++ .-... +..+...+.++|++
T Consensus 16 q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~ 89 (206)
T PF04989_consen 16 QYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITF 89 (206)
T ss_dssp S-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEE
T ss_pred cCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEE
Confidence 344456677777764 3568999999999877776654 2 45699999986 32211 22233455578999
Q ss_pred EEceeeeec-------C-CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 77 LKGKIEEIE-------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 77 ~~~d~~~~~-------~-~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++|..+.. + ......+|+-+.- -.+++. -..+.....++++|+.+|
T Consensus 90 i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~---H~~~hv-l~eL~~y~plv~~G~Y~I 144 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELASPPHPVLVILDSS---HTHEHV-LAELEAYAPLVSPGSYLI 144 (206)
T ss_dssp EES-SSSTHHHHTSGSS----SSEEEEESS-------SSH-HHHHHHHHHT--TT-EEE
T ss_pred EECCCCCHHHHHHHHHhhccCCceEEEECCC---ccHHHH-HHHHHHhCccCCCCCEEE
Confidence 999987653 1 1234446665431 112333 445566889999999987
No 268
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.00067 Score=58.75 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=64.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHH-------HHHHHH--HcCCCCeEEEEEceeeeecC-C
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANM-------AKQIVE--ANGFSNVITVLKGKIEEIEL-P 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~-------a~~~~~--~~~~~~~v~~~~~d~~~~~~-~ 87 (306)
.-...+++|||+|||+|+.++.+...|+..+...|.+ +.++. +...+. .+....-..+++....++.+ .
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 3456899999999999999999999888899999987 55411 011110 11111123344441112221 1
Q ss_pred Cc--eeeEEEEcccccccCCcchHHHH-HHHHhhcccCCeEEE
Q 021852 88 VT--KVDIIISEWMGYFLLFENMLNTV-LYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~--~~D~iv~~~~~~~~~~~~~~~~~-l~~~~~~L~p~G~~i 127 (306)
.+ .||+|.+.-..|.. ...+.+ ...+..+++++|+++
T Consensus 192 t~~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~ 231 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFY 231 (282)
T ss_pred ccccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhh
Confidence 13 78998885443432 344444 556668889999886
No 269
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.94 E-value=0.0028 Score=52.10 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcC-------CCCeEEEEEceeeeec---CCCce
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANG-------FSNVITVLKGKIEEIE---LPVTK 90 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~-------~~~~v~~~~~d~~~~~---~~~~~ 90 (306)
+.-.+.|||||-|.+.+.++. .+..-+.|.|+. ...++.++++++.. + .++.+.+.+..... +..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhhhcc
Confidence 345799999999999999988 456679999998 88888888877654 3 35777776665442 11111
Q ss_pred eeEE-EEcccccccC----CcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDII-ISEWMGYFLL----FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~i-v~~~~~~~~~----~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+-. ++-+=.++-. ..-.-..++.+..-+|++||.++
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 1111 1111001100 00012356666777899999986
No 270
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0073 Score=56.19 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=76.2
Q ss_pred CCCCC-EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHH-HHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDK-VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQI-VEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~-~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..+-. ++|-+|||.-.++..+-+.|...|+.+|+| -.++.+... ++.+ .-..+...|+..+.+++++||+|+-.
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDK 121 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEec
Confidence 34444 999999999999999999999999999999 444444332 2222 34789999999999999999999985
Q ss_pred ccccc-cCCcc------hHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYF-LLFEN------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~-~~~~~------~~~~~l~~~~~~L~p~G~~i 127 (306)
.-.+. +.++. .....+..+.++|++||+.+
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 43332 22222 23355677889999999965
No 271
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.87 E-value=0.0016 Score=53.08 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=68.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCC-EEEEEechHHHHH-------HHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAA-HVYAVECSQMANM-------AKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~-~v~~iD~s~~~~~-------a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+|.+|+|+=.|.|.++..++. .|++ .||+.-..+.... .+...++... .+++.+......+. +.+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQ 121 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCC
Confidence 4578899999999999999999988 3433 7887654432111 1111122222 24666666666555 447
Q ss_pred eeeEEEEcccccccC----CcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLL----FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~----~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..|++......+-++ +......+..++.+.|||||+++
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~ 163 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYL 163 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEE
Confidence 788877754433332 23455667778889999999986
No 272
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.86 E-value=0.0046 Score=51.64 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=60.9
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---CceeeEEEEccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGY 101 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~iv~~~~~~ 101 (306)
.++|||||=+..... +..+.-.|++||.++ ..-.+.+.|+.+.++| .++||+|++.++..
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 599999986543322 233444799999752 0124677787777654 57999999998877
Q ss_pred ccCCcchHHHHHHHHhhcccCCeE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGI 125 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~ 125 (306)
+......--.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 776556666788888999999998
No 273
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.83 E-value=0.0087 Score=51.40 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHH-----HHHcCCCCeEEEEEceeeeec---CCCce-eeE
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI-----VEANGFSNVITVLKGKIEEIE---LPVTK-VDI 93 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~-----~~~~~~~~~v~~~~~d~~~~~---~~~~~-~D~ 93 (306)
+...||++|+|+|..++.+|..+...|.-.|........+.+ .+.+++...+.+...++.... +-... +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 356799999999999999998666688888866333333333 233344335555555554432 11133 899
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++.-+.| .++..+.+...+..+|..++.++
T Consensus 166 ilasDvvy---~~~~~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 166 ILASDVVY---EEESFEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred EEEeeeee---cCCcchhHHHHHHHHHhcCCeEE
Confidence 99864323 44566667777778888888443
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.68 E-value=0.0031 Score=58.88 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=64.7
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCC--EEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~--~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
..|+|..+|.|.++.++.+.+.= .|+-+.-.+.+.. +-..|+ |-+.+...+.++.-+..||+|.++.+.+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc---chhccchhhccCCCCcchhheehhhhhhh
Confidence 58999999999999888776421 2222221122322 223354 44566555556533489999999866554
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....-.+..++-++.|.|+|+|.+|
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~i 464 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVI 464 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEE
Confidence 4455567888999999999999998
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.34 E-value=0.034 Score=50.79 Aligned_cols=95 Identities=28% Similarity=0.329 Sum_probs=61.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce-e-ee-ecCC-Cceee
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK-I-EE-IELP-VTKVD 92 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~-~~-~~~~-~~~~D 92 (306)
...++.+|+-+|||+ |+++..+++ .|+++|+++|.+ +-++.|++... . +.+.....+ . .. .... ...+|
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---~-~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---A-DVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---C-eEeecCccccHHHHHHHHhCCCCCC
Confidence 344555999999998 999888888 789999999998 78888876431 1 111111111 0 00 0122 24799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++=- .+ .+..+....++++|+|.++
T Consensus 241 ~vie~-~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 241 VVIEA-VG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred EEEEC-CC--------CHHHHHHHHHHhcCCCEEE
Confidence 98842 11 2335556668999999987
No 276
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.012 Score=52.86 Aligned_cols=96 Identities=22% Similarity=0.185 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEEcccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~~ 100 (306)
..+|+|-=+|||+=++..|. .+..+|+.-|+| +.++.++++++.|... ...+++.|+..+... ...||+|=.+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhcCCCccEEecCCCC
Confidence 78999999999999998887 566699999999 8999999999999443 467777787665422 3789999988864
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ ...+++++.+.++.+|.+.
T Consensus 132 S-------PaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 132 S-------PAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred C-------CchHHHHHHHHhhcCCEEE
Confidence 3 2346777778888899886
No 277
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.28 E-value=0.0076 Score=53.10 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=51.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--CceeeEEEEccc
Q 021852 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWM 99 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~iv~~~~ 99 (306)
+|+|+.||.|.++..+.++|...|.++|.+ ..++..+.+.. + .++.+|+.++... ...+|+++..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCCC
Confidence 699999999999999999999889999998 66666655532 1 2566777776522 257999998764
No 278
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.27 E-value=0.022 Score=51.67 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=55.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
...++.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|...-+..-..+..++....+.+|+|+-
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 345789999999875 666666676 677789999987 66666654 34321111111112221111235898885
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .+ . +..+....++|+++|+++
T Consensus 242 ~-~G----~----~~~~~~~~~~l~~~G~iv 263 (343)
T PRK09880 242 V-SG----H----PSSINTCLEVTRAKGVMV 263 (343)
T ss_pred C-CC----C----HHHHHHHHHHhhcCCEEE
Confidence 3 11 1 123444557899999987
No 279
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0062 Score=51.05 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=62.2
Q ss_pred CEEEEEcCCCcHHHHHHHHc--------CC--CEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--------C
Q 021852 25 KVVLDVGAGTGILSLFCAKA--------GA--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 86 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~--------g~--~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~ 86 (306)
.+|+|+.+..|.++..+++. +. ++++++|+.+|+-+ ..|.-+++|++... +
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI-----------~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI-----------EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc-----------CceEEeecccCCHhHHHHHHHHh
Confidence 68999999999999999872 11 13999998765432 23667788887654 5
Q ss_pred CCceeeEEEEcccccccCCcchHH---------HHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLN---------TVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~---------~~l~~~~~~L~p~G~~i 127 (306)
.+++.|+|||+...... +.++++ +.+.-..+.|+|||.++
T Consensus 112 ggekAdlVvcDGAPDvT-GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVT-GLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCcc-ccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 56899999997433221 122222 33344458999999997
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.21 E-value=0.033 Score=50.11 Aligned_cols=90 Identities=29% Similarity=0.323 Sum_probs=60.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce-eeeec-CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK-IEEIE-LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~-~~~~~~D~ 93 (306)
....+|++|+-+|+|- |.++..+|+ .| .+|+++|.+ +-.+.|++. |. -.++... ..... .. +.+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~~-~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAVK-EIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHhH-hhCcE
Confidence 5678899999999982 456777777 67 599999998 777777664 32 2344432 21111 12 34999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+.-. . +..+....+.|+++|.++
T Consensus 233 ii~tv--------~--~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 233 IIDTV--------G--PATLEPSLKALRRGGTLV 256 (339)
T ss_pred EEECC--------C--hhhHHHHHHHHhcCCEEE
Confidence 99632 1 334445568999999987
No 281
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.13 E-value=0.019 Score=50.12 Aligned_cols=106 Identities=21% Similarity=0.160 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHH--cCCC-CeEEEEEceeeeec--CCCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEA--NGFS-NVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~--~~~~-~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
...++||-||.|-|......+++. ...+.-+|++ ..++..++.... .+.. .+|.++-+|...+- .+.++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 456899999999999988877753 4478899998 777777776643 3343 47888888865542 345899999
Q ss_pred EEcccccccCCcch-HHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~-~~~~l~~~~~~L~p~G~~i 127 (306)
+.+.-.-....+.. .+.....+.+.||+||+++
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~ 233 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVC 233 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 99742222222222 2345556778999999997
No 282
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0035 Score=58.19 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----CCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~D~i 94 (306)
.++-+|||.=|++|+-++..|+ -|...|+|-|.+ ..++..+++++.|+..+.++..+.|+..+.. ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999999888 357789999999 8899999999999998888899988866542 24789999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
=.++.|. ...+++.+.+.++.||.+..
T Consensus 188 DLDPyGs-------~s~FLDsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 188 DLDPYGS-------PSPFLDSAVQAVRDGGLLCV 214 (525)
T ss_pred ecCCCCC-------ccHHHHHHHHHhhcCCEEEE
Confidence 9887543 34577777888899999873
No 283
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.021 Score=51.00 Aligned_cols=110 Identities=16% Similarity=0.070 Sum_probs=64.4
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeee--ecCC-Ccee
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE--IELP-VTKV 91 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~~~~ 91 (306)
.....+..+++||+|.|.|.-..++-. .+ .+.++.+|.|..+...-..+.+|-.........++++. ++++ ...|
T Consensus 107 ~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~y 186 (484)
T COG5459 107 KRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLY 186 (484)
T ss_pred HhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcccee
Confidence 344556678899999999866554444 22 44678888886665555555555433333333333332 1222 3567
Q ss_pred eEEEEc-ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISE-WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~-~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++.. -+.. ...+..+...++.+..++.|||.++
T Consensus 187 tl~i~~~eLl~-d~~ek~i~~~ie~lw~l~~~gg~lV 222 (484)
T COG5459 187 TLAIVLDELLP-DGNEKPIQVNIERLWNLLAPGGHLV 222 (484)
T ss_pred ehhhhhhhhcc-ccCcchHHHHHHHHHHhccCCCeEE
Confidence 766651 1111 2244455567888889999999876
No 284
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.95 E-value=0.079 Score=50.62 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cC----CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C----CCc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-AG----AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L----PVT 89 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-~g----~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~----~~~ 89 (306)
..+..+|+|-.||+|.+...+++ .+ ...++|.|.+ .....|+.++--+|....+.+.+++...-+ . ...
T Consensus 184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~ 263 (489)
T COG0286 184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKG 263 (489)
T ss_pred CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcc
Confidence 34667999999999988777766 22 2469999988 899999999888888534556665543322 1 236
Q ss_pred eeeEEEEccccc
Q 021852 90 KVDIIISEWMGY 101 (306)
Q Consensus 90 ~~D~iv~~~~~~ 101 (306)
+||.|++++...
T Consensus 264 ~~D~viaNPPf~ 275 (489)
T COG0286 264 KFDFVIANPPFS 275 (489)
T ss_pred ceeEEEeCCCCC
Confidence 799999997643
No 285
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.91 E-value=0.016 Score=51.20 Aligned_cols=95 Identities=26% Similarity=0.276 Sum_probs=63.9
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee--eeec------CC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--EEIE------LP 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~------~~ 87 (306)
..+.+|.+||-+|+|+ |++++..|+ .|+++|+.+|.+ +-++.|++ + |.. .+....... .++. +.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-VTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-EEeeccccccHHHHHHHHHhhcc
Confidence 4578899999999998 999999999 799999999998 88888877 3 432 122211111 1110 22
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+.+.- .-.+..+++....++++|.++
T Consensus 240 ~~~~d~~~dC---------sG~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 240 KKQPDVTFDC---------SGAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred ccCCCeEEEc---------cCchHHHHHHHHHhccCCEEE
Confidence 3457887742 122344555567889999976
No 286
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.90 E-value=0.14 Score=42.71 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=64.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cC--CCEEEEEech-HHHHHHHHHHHHc----------------
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECS-QMANMAKQIVEAN---------------- 68 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g--~~~v~~iD~s-~~~~~a~~~~~~~---------------- 68 (306)
+.|+.++... .-..+-++.|-.||+|.+.-.+.- ++ .+.|+|.|++ ++++.|++|+.-.
T Consensus 38 Ei~qR~l~~l-~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246)
T PF11599_consen 38 EIFQRALHYL-EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246)
T ss_dssp HHHHHHHCTS-SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence 5566665432 123456999999999977554443 22 4589999999 8999998875321
Q ss_pred -------------------------CCCCeEEEEEceeeeec-----CCCceeeEEEEccc-ccccCCc-----chHHHH
Q 021852 69 -------------------------GFSNVITVLKGKIEEIE-----LPVTKVDIIISEWM-GYFLLFE-----NMLNTV 112 (306)
Q Consensus 69 -------------------------~~~~~v~~~~~d~~~~~-----~~~~~~D~iv~~~~-~~~~~~~-----~~~~~~ 112 (306)
|-.....+...|+++.. ......|+|+.+.. |.-..++ ...+.+
T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~m 196 (246)
T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQM 196 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHH
Confidence 11223667777776632 11244799999742 2212222 356788
Q ss_pred HHHHhhcccCCeEEE
Q 021852 113 LYARDKWLVDDGIVL 127 (306)
Q Consensus 113 l~~~~~~L~p~G~~i 127 (306)
+..+...|-+++++.
T Consensus 197 l~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 197 LNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHCCS-TT-EEE
T ss_pred HHHHHhhCCCCcEEE
Confidence 999999995444443
No 287
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.75 E-value=0.068 Score=51.06 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce--------eeeec----
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK--------IEEIE---- 85 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--------~~~~~---- 85 (306)
..++.+|+-+|+|. |..++.+|+ .|+ .|+++|.+ +-++.+++ .|.. .+.+-..+ +.+..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHH
Confidence 45789999999998 888888888 687 89999988 66666654 2431 11111100 00000
Q ss_pred ------CC--CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 ------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ------~~--~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+. ...+|+|+.-.. .........+.+...+.+||||+++
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkpGgvIV 282 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKPGSVIV 282 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCCCCEEE
Confidence 01 136999997431 1111122223477778999999987
No 288
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.62 E-value=0.055 Score=45.89 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=64.6
Q ss_pred HHHHHHH---hcccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-H----HHHHHHHHHHHcCCCCeEEEEEc
Q 021852 10 SYQNVIY---QNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-Q----MANMAKQIVEANGFSNVITVLKG 79 (306)
Q Consensus 10 ~~~~ai~---~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~----~~~~a~~~~~~~~~~~~v~~~~~ 79 (306)
....+|. .+.++.+|.+||=||+++|...-..+. .| -.-|||+|.| . ++..|+++ ++.|.++ -
T Consensus 140 KLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tNiiPIi-E 212 (317)
T KOG1596|consen 140 KLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TNIIPII-E 212 (317)
T ss_pred HHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------CCceeee-c
Confidence 3444453 457889999999999999987666666 33 4479999976 2 34444332 1334444 3
Q ss_pred eeeeec---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 80 KIEEIE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 80 d~~~~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++... +.-.-+|+|+++.. .......+.-....+||+||-++
T Consensus 213 DArhP~KYRmlVgmVDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfv 258 (317)
T KOG1596|consen 213 DARHPAKYRMLVGMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFV 258 (317)
T ss_pred cCCCchheeeeeeeEEEEeccCC-----CchhhhhhhhhhhhhhccCCeEE
Confidence 554321 11246899998742 11222223334568999999876
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.44 E-value=0.13 Score=47.50 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=62.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce-ee-ee-c-CCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK-IE-EI-E-LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~-~~-~-~~~~~~ 91 (306)
..+.++.+||.+|+|. |.++..+|+ .|..+|++++.+ +..+.+++.. +. ..+.....+ .. .+ . .+...+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567889999999987 777777777 566679999987 7777776542 21 112211111 10 11 1 123469
Q ss_pred eEEEEcccccc------------cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYF------------LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~------------~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+-..-+.. +.........+....+.++++|.++
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 303 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS 303 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence 99886321100 0011112445666778999999987
No 290
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.40 E-value=0.3 Score=42.67 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCC--CCeEEEEEceeee
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 83 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~~ 83 (306)
.|++.+.+.+.+.... ....|+.+|||-=.-...+......+++=+|..++++.-++.+.+.+. ..+.+++..|+.+
T Consensus 65 ~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 4777777777765432 245799999997655555533212356666666777777777776543 3568888888862
Q ss_pred -ec-------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 84 -IE-------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 84 -~~-------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+. +.....-++++|.+..++ .+.....++..+.+...||+.++.+
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11 122455688888776655 5667888999988888899888733
No 291
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.36 E-value=0.033 Score=46.95 Aligned_cols=76 Identities=25% Similarity=0.323 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCc-HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEEceeeeecCC-----CceeeE
Q 021852 23 KDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLKGKIEEIELP-----VTKVDI 93 (306)
Q Consensus 23 ~~~~VLDlG~G~G-~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~-----~~~~D~ 93 (306)
++.+.||||.|.- +..+.-.+ .|. +.+|.|++ ..+..|+.++..| ++...|++....=.+..++ .+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 5678999999963 33333333 444 78999998 7889999999998 7877677765433222222 589999
Q ss_pred EEEccc
Q 021852 94 IISEWM 99 (306)
Q Consensus 94 iv~~~~ 99 (306)
.+|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999986
No 292
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.11 Score=46.78 Aligned_cols=120 Identities=18% Similarity=0.025 Sum_probs=72.4
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC---C--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-------
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG---A--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------- 85 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g---~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 85 (306)
..+.++.+|||+.+-.|.=+..+.++. . ..|++=|.+ .-+......+.+..- .++.+.+.++...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 567899999999999998887766632 2 278998977 545555444433322 34555555544332
Q ss_pred --CCCceeeEEEEcccccccC-Cc---c---------------h-HHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 86 --LPVTKVDIIISEWMGYFLL-FE---N---------------M-LNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~-~~---~---------------~-~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
.....||-|+++...+.-. .+ . . --.++..-.++||+||.++-+.+++ .|++.+
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL--npieNE 305 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL--NPIENE 305 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC--CchhhH
Confidence 1235799999975433110 00 0 0 0145556668999999999555533 344443
No 293
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.29 E-value=0.063 Score=48.15 Aligned_cols=65 Identities=35% Similarity=0.424 Sum_probs=49.8
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEccc
Q 021852 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 99 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~~~ 99 (306)
+++|+-||.|.+++-+.++|...|.|+|++ ..++..+.+.. ....+|+.++. ++. .+|+++..+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccC
Confidence 699999999999999999998899999999 66666666542 67788888776 443 5999998654
No 294
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.22 E-value=0.17 Score=44.51 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=66.8
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
+.+.......++...+|.=-|.|..+..+.+.. .++++|+|.+ .+++.|++.+...+ +++++++++..++.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 334445667888999999999999998888743 4589999999 89999999988766 68999999987764
Q ss_pred -CCCceeeEEEEcc
Q 021852 86 -LPVTKVDIIISEW 98 (306)
Q Consensus 86 -~~~~~~D~iv~~~ 98 (306)
...+++|-|+.++
T Consensus 91 ~~~i~~vDGiL~DL 104 (314)
T COG0275 91 ELGIGKVDGILLDL 104 (314)
T ss_pred hcCCCceeEEEEec
Confidence 2246889998864
No 295
>PRK11524 putative methyltransferase; Provisional
Probab=94.91 E-value=0.095 Score=46.38 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=40.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA 67 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~ 67 (306)
-.+|..|||--+|+|.-++++.+.| ++.+|+|++ +.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence 4689999999999999999888885 499999999 899999888753
No 296
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.68 E-value=0.085 Score=44.48 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=34.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHH
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~ 63 (306)
.-.+|..|||--||+|..+.++.+.|- +.+|+|++ +.++.|++
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 356799999999999999999988854 89999999 78888764
No 297
>PRK13699 putative methylase; Provisional
Probab=94.68 E-value=0.15 Score=43.64 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=40.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN 68 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~ 68 (306)
-.+|..|||--||+|..+.++.+.|. +.+|+|++ +..+.|.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 45889999999999999998888755 89999999 8888888877653
No 298
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.58 E-value=0.082 Score=47.06 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=55.4
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-CCce
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~ 90 (306)
....++..++|.=-|.|.-+..+.+ .+..+|+|+|.+ .+++.|++++... .+++.+++++..++. . ...+
T Consensus 16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 16 LNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp HT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred hCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCc
Confidence 4467788999999999999998887 455799999999 8888988776543 478999999987764 3 3468
Q ss_pred eeEEEEcc
Q 021852 91 VDIIISEW 98 (306)
Q Consensus 91 ~D~iv~~~ 98 (306)
+|.|+.+.
T Consensus 94 ~dgiL~DL 101 (310)
T PF01795_consen 94 VDGILFDL 101 (310)
T ss_dssp EEEEEEE-
T ss_pred cCEEEEcc
Confidence 99999864
No 299
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.58 E-value=0.61 Score=42.27 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=56.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc----------CC-------CEEEEEec-h-HHHHHHHHHHHH----cCCCC-eEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA----------GA-------AHVYAVEC-S-QMANMAKQIVEA----NGFSN-VITV 76 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~----------g~-------~~v~~iD~-s-~~~~~a~~~~~~----~~~~~-~v~~ 76 (306)
..+.-+|+|+||.+|.-++.+... .. -.|+--|. + +.-...+..-.. ....+ -+..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344569999999999887766431 01 16888883 3 433222221111 00111 1334
Q ss_pred EEceeeeecCCCceeeEEEEcccccccCC------------------------------------cchHHHHHHHHhhcc
Q 021852 77 LKGKIEEIELPVTKVDIIISEWMGYFLLF------------------------------------ENMLNTVLYARDKWL 120 (306)
Q Consensus 77 ~~~d~~~~~~~~~~~D~iv~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~L 120 (306)
+.+..-.-.+|.+++|+++|....|++.. ..++..+|+.+.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 44555544478899999999543343321 024557788888889
Q ss_pred cCCeEEE
Q 021852 121 VDDGIVL 127 (306)
Q Consensus 121 ~p~G~~i 127 (306)
+|||+++
T Consensus 174 v~GG~mv 180 (334)
T PF03492_consen 174 VPGGRMV 180 (334)
T ss_dssp EEEEEEE
T ss_pred ccCcEEE
Confidence 9999998
No 300
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.48 E-value=0.2 Score=45.93 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=55.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ec-CCCce
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~ 90 (306)
..+.++.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-.+.+++ .|.. .++...-.+ +. ...+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCC
Confidence 4567889999999865 556666666 677789999987 66666543 3431 122211111 11 11236
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+-.. + . ...+....+.|+++|.++
T Consensus 260 ~d~vid~~-G----~----~~~~~~~~~~l~~~G~iv 287 (371)
T cd08281 260 VDYAFEMA-G----S----VPALETAYEITRRGGTTV 287 (371)
T ss_pred CCEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 89988421 1 1 123444457889999987
No 301
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.39 E-value=0.25 Score=45.03 Aligned_cols=96 Identities=20% Similarity=0.165 Sum_probs=55.6
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ec--CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~~~D 92 (306)
..+.++.+||-.|+|. |.++..+|+ .|+.+|+++|.+ +-.+.+++ .|...-+.....+..+ +. .+...+|
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4567899999999865 666666677 577679999987 66666543 3431111111111110 10 1224689
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+-. .+ .. ..+....+.++++|+++
T Consensus 248 ~vid~-~g----~~----~~~~~~~~~~~~~G~iv 273 (358)
T TIGR03451 248 VVIDA-VG----RP----ETYKQAFYARDLAGTVV 273 (358)
T ss_pred EEEEC-CC----CH----HHHHHHHHHhccCCEEE
Confidence 88842 11 11 23334457889999987
No 302
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.08 E-value=0.047 Score=40.35 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS 55 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s 55 (306)
+.....|||||.|+|...+.+-|. .=+|+|..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 455799999999999999998776 67788853
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.06 E-value=0.14 Score=45.75 Aligned_cols=83 Identities=25% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.++.+||-+|+|. |.++..+|+ .|+..|+++|.+ +.++.|.+. . ++. ..+. ....+|+|+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i~--~~~~--~~~g~Dvvid~- 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VLD--PEKD--PRRDYRAIYDA- 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------ccC--hhhc--cCCCCCEEEEC-
Confidence 3577899999875 777777777 688778888876 555544321 1 111 1110 12468988842
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ . +..++...++|+++|+++
T Consensus 208 ~G----~----~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 208 SG----D----PSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred CC----C----HHHHHHHHHhhhcCcEEE
Confidence 21 1 224455567899999987
No 304
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.98 E-value=0.67 Score=40.03 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----cC--CCEEEEEec-hH---------------------
Q 021852 5 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG--AAHVYAVEC-SQ--------------------- 56 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~g--~~~v~~iD~-s~--------------------- 56 (306)
..|...+..++.......-...|+|+|+-.|..++.++. .+ .+++++.|. ..
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 567788888888765444456899999999977665533 22 457888772 11
Q ss_pred -----HHHHHHHHHHHcCC-CCeEEEEEceeeeec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 57 -----MANMAKQIVEANGF-SNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 57 -----~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
..+..++++++.++ .+++.++.+.+.+-. .+.+++-++..+. =.++ .-...|..+...|.|||+++.
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlYe-sT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLYE-STKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHH-HHHHHHHHHGGGEEEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec----cchH-HHHHHHHHHHhhcCCCeEEEE
Confidence 11222333333343 357999999986532 2334554544431 1133 334567777888999999985
Q ss_pred cCc
Q 021852 129 DKA 131 (306)
Q Consensus 129 ~~~ 131 (306)
+..
T Consensus 211 DDY 213 (248)
T PF05711_consen 211 DDY 213 (248)
T ss_dssp SST
T ss_pred eCC
Confidence 554
No 305
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.96 E-value=0.19 Score=45.85 Aligned_cols=91 Identities=24% Similarity=0.423 Sum_probs=52.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEec---h-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVEC---S-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~---s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
..++.+||-+|+|. |.++..+|+ .|+ +|++++. + +-.+.+ ++.|.. .+.....+..+.. ....+|+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~----~~~Ga~-~v~~~~~~~~~~~-~~~~~d~v 242 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV----EELGAT-YVNSSKTPVAEVK-LVGEFDLI 242 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH----HHcCCE-EecCCccchhhhh-hcCCCCEE
Confidence 45788999999875 666776777 566 7999986 3 333443 334431 1111111111111 12468988
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+--. + . +..+....+.|+++|.++
T Consensus 243 id~~-g----~----~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 243 IEAT-G----V----PPLAFEALPALAPNGVVI 266 (355)
T ss_pred EECc-C----C----HHHHHHHHHHccCCcEEE
Confidence 8531 1 1 124455668899999886
No 306
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.89 E-value=0.33 Score=44.00 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
..++.+||-+|+|. |.++..+++ .|+.+|+++|.+ +-++.+++ .+. ...+ .++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh-hccCCcEEEE
Confidence 46789999999876 666655555 466789999987 56666543 121 1111 1111 1124898884
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .+ . ...+..+....++|+++|+++
T Consensus 229 ~-~G----~-~~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 229 C-VG----G-RGSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred C-CC----C-CccHHHHHHHHHhCcCCcEEE
Confidence 2 21 1 112334555668999999987
No 307
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.80 E-value=0.23 Score=45.01 Aligned_cols=50 Identities=30% Similarity=0.310 Sum_probs=36.0
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHH
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAK 62 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~ 62 (306)
+.|.......+-..|.|+|+|.|.++.+++-...-.|+|||-| ...+.|+
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 3343434445667999999999999999987434489999988 5444443
No 308
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.76 E-value=0.045 Score=50.11 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=56.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCe-EEEEEceeeee
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNV-ITVLKGKIEEI 84 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~ 84 (306)
...+|..|-|+-||-|.+++.+++.+ .+|++-|.+ +++++.+.++..|.+.+. +++.+.|+.++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 35788999999999999999999987 599999999 999999999999988765 88888777654
No 309
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.68 E-value=0.21 Score=47.64 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-----------ec--
Q 021852 22 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-----------IE-- 85 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~-- 85 (306)
.++.+|+-+|+|. |..+..+++ .|+ .|+++|.+ +-++.+++ .|. +++.-+..+ +.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 4568999999997 677777777 576 69999988 65555543 232 222212110 00
Q ss_pred --------CC--CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 --------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --------~~--~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ ...+|+|+.-.+.. +.....-+.++..+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Talip---G~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALIP---GKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccC---CCCCCeeehHHHHhhCCCCCEEE
Confidence 11 25699998854322 11222224455668899999987
No 310
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.57 E-value=0.37 Score=41.91 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---CceeeEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~iv 95 (306)
...|+.|+-+| ---+.+++++-.| +++|..+|++ ..+....+.+++.|+ ++++.+.-|+++. +| ..+||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHHHHhhCCeee
Confidence 34578899999 3336666666644 7799999999 799999999999998 4588888888764 33 36999999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCC
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDD 123 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~ 123 (306)
.+++... ..+..++..=...||..
T Consensus 227 TDPpeTi----~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 TDPPETI----KALKLFLGRGIATLKGE 250 (354)
T ss_pred cCchhhH----HHHHHHHhccHHHhcCC
Confidence 9875322 34444554433445443
No 311
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.56 E-value=0.39 Score=43.31 Aligned_cols=96 Identities=25% Similarity=0.190 Sum_probs=54.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
..+.++.+||-.|+|. |.++..+|+ .|+++|++++.+ +-.+.+++ .|...-+.....+...+. .....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 4567799999998764 555555666 677669999977 65555543 343211111111111111 12347999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+-.. .. ...+....+.|+++|.++
T Consensus 235 vid~~-----g~----~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECS-----GN----TAARRLALEAVRPWGRLV 259 (339)
T ss_pred EEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 98531 11 123334457889999987
No 312
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.42 E-value=0.59 Score=43.58 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=56.5
Q ss_pred HHHHHhc-ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 12 QNVIYQN-KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 12 ~~ai~~~-~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.+.|.+. ....+|++|+-+|+|. |.....+++ .|+ +|+++|.+ .-+..|++ .|. +.+ +..+. .
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v- 255 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V- 255 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H-
Confidence 3444433 2346899999999998 666555555 677 89999987 44444433 343 222 11222 1
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+... +....+-.+..+.+++||+++
T Consensus 256 -~~aDVVI~at--------G~~~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 256 -KEGDIFVTTT--------GNKDIITGEHFEQMKDGAIVC 286 (413)
T ss_pred -cCCCEEEECC--------CCHHHHHHHHHhcCCCCcEEE
Confidence 3579998632 122223334468899999987
No 313
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=93.40 E-value=0.3 Score=40.14 Aligned_cols=109 Identities=13% Similarity=0.232 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcccCCCCC-EEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCC--CeEEEEEcee
Q 021852 6 VRTKSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFS--NVITVLKGKI 81 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~-~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 81 (306)
.|+..+.+.+.+.....++. .|+.||||-=.....+... +..+++=+|..++++.-++.++..+.. .+.+++.+|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 46667777776554334554 9999999987777777763 344777777777777777776665321 2345688888
Q ss_pred eeec---------CCCceeeEEEEcccccccCCcchHHHHHHH
Q 021852 82 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYA 115 (306)
Q Consensus 82 ~~~~---------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~ 115 (306)
.+.. +.....-++++|.+..++ .+.....++..
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl-~~~~~~~ll~~ 181 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYL-SPEQVDALLRA 181 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcC-CHHHHHHHHHH
Confidence 6532 224667788888765555 44455555554
No 314
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.31 E-value=0.42 Score=43.31 Aligned_cols=97 Identities=24% Similarity=0.250 Sum_probs=54.0
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
....++.+||-.|+|+ |.++..+|+ .|++.|++++.+ +-.+.+++ .|...-+.....+...+. .+...+|.
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 3456789999998865 556666666 677678999877 55555533 343111111111111111 12346784
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.+..+. ...+....+.|+++|.++
T Consensus 232 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv 257 (347)
T PRK10309 232 LILETAGV--------PQTVELAIEIAGPRAQLA 257 (347)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEE
Confidence 44443321 224455568889999987
No 315
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.19 E-value=0.087 Score=41.94 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCCCceeeEEEEc-cc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISE-WM 99 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~D~iv~~-~~ 99 (306)
|++++-+|+..=..-.++.+.||++|..+|.+ +.-+..+.++ .++...+. .++..-.++||.+.|- .+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 67899999998777777778899999999976 2222222211 01111111 1111113678887772 12
Q ss_pred ccccC--------CcchHHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 100 GYFLL--------FENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 100 ~~~~~--------~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
.++.+ ..+++. .+..+.++|||||.++ ...|+..+
T Consensus 74 Eh~GLGRYGDPidp~Gdl~-~m~~i~~vLK~GG~L~------l~vPvG~d 116 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLR-AMAKIKCVLKPGGLLF------LGVPVGTD 116 (177)
T ss_pred ccccccccCCCCCccccHH-HHHHHHHhhccCCeEE------EEeecCCc
Confidence 12211 123443 4455678999999987 55666643
No 316
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.07 E-value=0.24 Score=43.52 Aligned_cols=93 Identities=26% Similarity=0.217 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE--ceeeeecCCCceeeEEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK--GKIEEIELPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~D~iv 95 (306)
..++.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-.+.+++ .|...-+.... ....++ .....+|+++
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHH-hCCCCCCEEE
Confidence 45789999998875 566666666 677779999977 55555544 34311111100 001111 1224689988
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.. + . +..+....+.|+++|+++
T Consensus 193 d~~-G----~----~~~~~~~~~~l~~~G~iv 215 (280)
T TIGR03366 193 EFS-G----A----TAAVRACLESLDVGGTAV 215 (280)
T ss_pred ECC-C----C----hHHHHHHHHHhcCCCEEE
Confidence 421 1 1 223444557889999987
No 317
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.03 E-value=0.34 Score=41.75 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=57.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..+.+|..-.|+|+-.|.++-.+.+.+- .||++|...|+...-. . +.|+-...|-..+.....+.|-.||++
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~d----t---g~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMD----T---GQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhc----c---cceeeeeccCcccccCCCCCceEEeeh
Confidence 4567899999999999999999999866 9999999877554422 2 357777777777654357899999987
Q ss_pred c
Q 021852 99 M 99 (306)
Q Consensus 99 ~ 99 (306)
+
T Consensus 279 V 279 (358)
T COG2933 279 V 279 (358)
T ss_pred h
Confidence 5
No 318
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.71 E-value=0.57 Score=40.80 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=47.2
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHc------CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~------g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
-+.+...+.++..++|+|||.|.++.++++. ....++.||....-..+...++.......++=+..|+.++.+
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccch
Confidence 3444444567889999999999999999883 245899999642111333333333321246777778887763
No 319
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.67 E-value=0.56 Score=42.80 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=68.7
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHH-------HHHHHcCC-CCeEEEEEceeeeecC-
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAK-------QIVEANGF-SNVITVLKGKIEEIEL- 86 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~-------~~~~~~~~-~~~v~~~~~d~~~~~~- 86 (306)
...+.+++...|+|+|-|.+..++|. ++.+.-.|+|+. ...+.|. +..+..|- .+.+..++++..+...
T Consensus 187 El~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 187 ELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred HhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHH
Confidence 35678899999999999999887776 667778888864 3222222 22233333 3568888888755431
Q ss_pred --CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 --PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 --~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-...+++|+++-+ .+. +.+..=+..+..-+++|.++|
T Consensus 267 ~eI~~eatvi~vNN~---~Fd-p~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNV---AFD-PELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred HHHhhcceEEEEecc---cCC-HHHHHhhHHHHhhCCCcceEe
Confidence 1357899999754 222 333333336667789999887
No 320
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.66 E-value=0.29 Score=43.35 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=38.1
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHH
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQI 64 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~ 64 (306)
...+.+|.+|.-.|.|. |+...+-|+ +||++++|+|++ +-.+.|++.
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 35678999999999998 666667777 799999999988 777776553
No 321
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.43 E-value=0.46 Score=40.82 Aligned_cols=96 Identities=27% Similarity=0.280 Sum_probs=54.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-e-cCCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~D~i 94 (306)
....++.+||..|+|+ |.....+++....+|++++.+ +..+.+++ .+....+.....+... + ......+|++
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 3447889999999986 556666666323589999987 55555533 2321111111101100 0 1123679999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...- .. .......+.|+++|.++
T Consensus 206 i~~~~-----~~----~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 206 IDAVG-----GP----ETLAQALRLLRPGGRIV 229 (271)
T ss_pred EECCC-----CH----HHHHHHHHhcccCCEEE
Confidence 86421 11 23444557889999987
No 322
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.39 E-value=0.92 Score=41.79 Aligned_cols=104 Identities=15% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------C----CCEEEEEec-h-HHHHHHHHHHH--H-----------cCCCC
Q 021852 24 DKVVLDVGAGTGILSLFCAKA------------G----AAHVYAVEC-S-QMANMAKQIVE--A-----------NGFSN 72 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~------------g----~~~v~~iD~-s-~~~~~a~~~~~--~-----------~~~~~ 72 (306)
..+|+|+|||+|..++.+... + --+|+.-|. + +.-...+..-. . .+-..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 558999999999887655320 1 125777773 2 33222222111 0 11000
Q ss_pred -eEEEEEceeeeecCCCceeeEEEEcccccccCC-----------------------------------cchHHHHHHHH
Q 021852 73 -VITVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------------------------------ENMLNTVLYAR 116 (306)
Q Consensus 73 -~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~-----------------------------------~~~~~~~l~~~ 116 (306)
=+..+.+..-.-.+|.++.+++.|....|++.. ..++..+|+.+
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222333333367889999998654444431 11455777888
Q ss_pred hhcccCCeEEE
Q 021852 117 DKWLVDDGIVL 127 (306)
Q Consensus 117 ~~~L~p~G~~i 127 (306)
.+-|.|||.++
T Consensus 224 a~ELvpGG~mv 234 (386)
T PLN02668 224 AQEMKRGGAMF 234 (386)
T ss_pred HHHhccCcEEE
Confidence 88899999997
No 323
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.34 E-value=0.81 Score=40.33 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=56.1
Q ss_pred ccCCCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---------
Q 021852 19 KFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--------- 85 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 85 (306)
.....|.+||-=|+|+| .+++.+|+.|+ ++...|++ +......+.++++| ++....+|+.+..
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHH
Confidence 33456889999999998 45777788888 88899987 66665556666665 5788888886653
Q ss_pred -CCCceeeEEEEcc
Q 021852 86 -LPVTKVDIIISEW 98 (306)
Q Consensus 86 -~~~~~~D~iv~~~ 98 (306)
-+-+.+|++|.+.
T Consensus 109 k~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 109 KKEVGDVDILVNNA 122 (300)
T ss_pred HHhcCCceEEEecc
Confidence 1246899999873
No 324
>PRK11524 putative methyltransferase; Provisional
Probab=92.08 E-value=0.19 Score=44.40 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=39.1
Q ss_pred eEEEEEceeeee--cCCCceeeEEEEcccccccC--------------CcchHHHHHHHHhhcccCCeEEE
Q 021852 73 VITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL--------------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 73 ~v~~~~~d~~~~--~~~~~~~D~iv~~~~~~~~~--------------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+++++|+.+. .++++++|+|++++. |... +...+...+.++.++|||||.++
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~ 77 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMY 77 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 357888998875 266789999999975 3221 01223567888999999999987
No 325
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=91.99 E-value=0.54 Score=41.67 Aligned_cols=72 Identities=26% Similarity=0.292 Sum_probs=50.2
Q ss_pred EEEcCCCcHH-HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-------CCceeeEEEEcc
Q 021852 28 LDVGAGTGIL-SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-------PVTKVDIIISEW 98 (306)
Q Consensus 28 LDlG~G~G~l-~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~~D~iv~~~ 98 (306)
+|||+|.--+ .+.-++...-...|+|++ .-...|++++..|+++..+.+++....+..+ ++.-||.+.|++
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence 7888887432 322233222368899998 5689999999999999989888875433221 235699999997
Q ss_pred c
Q 021852 99 M 99 (306)
Q Consensus 99 ~ 99 (306)
.
T Consensus 187 P 187 (419)
T KOG2912|consen 187 P 187 (419)
T ss_pred c
Confidence 5
No 326
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.93 E-value=0.58 Score=41.47 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=64.0
Q ss_pred CCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 24 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
+.+|.-||.|. |.-+...|- .|+ .|+-+|.| +-++.....+. .++..+..+...+.-.-.++|++|...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE-
Confidence 35677788776 444333333 455 99999998 76666654432 4688887777666544468999998654
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
......+.-+.+++.+.+|||++++
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEE
Confidence 2344555556677788999999987
No 327
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.92 E-value=0.46 Score=42.61 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=39.5
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHH
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQI 64 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~ 64 (306)
...+.+|.+|.-+|||. |+.++..|+ +|+.+++|+|++ +-++.|++.
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 45678999999999997 888888887 799999999998 777777653
No 328
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.79 E-value=0.26 Score=44.36 Aligned_cols=66 Identities=26% Similarity=0.324 Sum_probs=48.2
Q ss_pred EEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEEccc
Q 021852 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 99 (306)
Q Consensus 27 VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~ 99 (306)
|+|+-||.|.+++-+.++|...+.++|++ ..++..+.+. ++ .++.+|+.++... -..+|+++..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEecCC
Confidence 68999999999999999998788899998 5655555543 22 4556777776521 235899998654
No 329
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.45 E-value=1.8 Score=38.64 Aligned_cols=96 Identities=22% Similarity=0.211 Sum_probs=56.3
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-e-cCCCceee
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVD 92 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~D 92 (306)
...+.++.+||..|+|. |..+..+|+ .|. +|++++.+ +..+.+++ .+....+.....+..+ + ..+...+|
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 34467788999988764 677777777 555 69999987 66666543 3432111111111100 0 12346799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++... .. ...+....+.|+++|.++
T Consensus 235 ~vid~~-----g~----~~~~~~~~~~l~~~G~~v 260 (338)
T cd08254 235 VIFDFV-----GT----QPTFEDAQKAVKPGGRIV 260 (338)
T ss_pred EEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 888531 01 234555668999999987
No 330
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.29 E-value=1.4 Score=39.58 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce---eeeecCCCceeeEEEE
Q 021852 23 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK---IEEIELPVTKVDIIIS 96 (306)
Q Consensus 23 ~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~D~iv~ 96 (306)
++.+||..|+|. |..+..+|+ .|..+|++++.+ +..+.+++ .+. + .++..+ ...+......+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGA-D--ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCC-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999988765 555666666 566689999977 66555443 233 1 122211 1112112245999986
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..- . ...+....+.|+++|+++
T Consensus 238 ~~g-----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 238 ASG-----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred CCC-----C----HHHHHHHHHHHhcCCEEE
Confidence 321 1 123445568889999987
No 331
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.18 E-value=0.52 Score=39.62 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=48.8
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
+.......+-|++||.|.|.++..+..+|+.+...+|.+ ..+.-.+...++.. .+..+.++|+...
T Consensus 44 K~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 44 KKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred HhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 334455678899999999999999999999899999987 56555544443332 3678888887544
No 332
>PRK13699 putative methylase; Provisional
Probab=90.65 E-value=0.29 Score=41.84 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=38.1
Q ss_pred EEEEceeeee--cCCCceeeEEEEcccccccC-----C--------cchHHHHHHHHhhcccCCeEEE
Q 021852 75 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLL-----F--------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 75 ~~~~~d~~~~--~~~~~~~D~iv~~~~~~~~~-----~--------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++++|..++ .++++++|+|++++. |... + .......+.++.|+|||||.++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 5778888765 478899999999975 4321 0 1234567888899999999876
No 333
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.20 E-value=1.4 Score=38.12 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc---------CCCEEEEEech-HHHHHHHHHHHHc-----CCCCeEEEEEceeeeecCCC
Q 021852 24 DKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECS-QMANMAKQIVEAN-----GFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~---------g~~~v~~iD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~ 88 (306)
.-+|+|+|+|+|.++.-+.+. ...+++.+|.| .+.+.-++.+... ....+|... .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999998777651 13489999999 6766666665432 233456662 2333222
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
..-+|+++-
T Consensus 95 -~~~~iiaNE 103 (252)
T PF02636_consen 95 -FPGFIIANE 103 (252)
T ss_dssp -CCEEEEEES
T ss_pred -CCEEEEEee
Confidence 345667654
No 334
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.08 E-value=0.52 Score=42.63 Aligned_cols=70 Identities=29% Similarity=0.282 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC--c-eeeEEEEccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV--T-KVDIIISEWM 99 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~D~iv~~~~ 99 (306)
..+++|+-||.|.+.+-+.++|..-+.++|++ ..++.-+.+... ..++..|+.++.... . .+|+++..+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 35799999999999999999998889999999 555555444321 456667776654221 2 7999998654
No 335
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.06 E-value=1.5 Score=35.54 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=58.0
Q ss_pred EEcCCCcHHHHHHHH-cC-CCEEEEEech---HHHHH---HHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 29 DVGAGTGILSLFCAK-AG-AAHVYAVECS---QMANM---AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 29 DlG~G~G~l~~~~a~-~g-~~~v~~iD~s---~~~~~---a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
-||-|.=.+++.+++ .+ ...++|.-.+ +..+. +.++++...-.+.......|++++. ....+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 467777777778877 34 5577776543 23222 2234333211111223444666554 24578999999
Q ss_pred ccccccc----------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFL----------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~----------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+..+. .+...+..++..+.++|+++|.+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~Ih 122 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIH 122 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 8654331 112355677888889999999986
No 336
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=89.91 E-value=5.5 Score=33.50 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCc----HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCCCceeeEEEE
Q 021852 24 DKVVLDVGAGTG----ILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIIS 96 (306)
Q Consensus 24 ~~~VLDlG~G~G----~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~D~iv~ 96 (306)
-+.+++..|+-| .+++.+|. +-..+++.|-.+ +-....++.+...++.+.++|+.++. +++...-..+|.++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 457888865543 23333333 323367777766 55666677777778877789998885 344323357899887
Q ss_pred cccccccCCcchHH-HHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLN-TVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~-~~l~~~~~~L~p~G~~i 127 (306)
+. ...+.. .+++.+ + +.|.|-++
T Consensus 122 Dc------~~~d~~~~vl~~~-~-~~~~GaVV 145 (218)
T PF07279_consen 122 DC------KREDFAARVLRAA-K-LSPRGAVV 145 (218)
T ss_pred eC------CchhHHHHHHHHh-c-cCCCceEE
Confidence 53 112333 555543 2 44555544
No 337
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.73 E-value=2.4 Score=38.37 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=55.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-----c-CCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-----E-LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~ 89 (306)
....++.+||-.|+|. |..+..+|+ .|+..|++++.+ +..+.+++ .|.. .++...-.++ . .+..
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCC
Confidence 4567789999998764 555666666 677789999977 55555543 3432 1222111111 0 1235
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++-.. .. ...+....+.|+++|+++
T Consensus 235 ~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 235 GVDAVIIAG-----GG----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred CCcEEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 699988531 11 124455567889999987
No 338
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=89.48 E-value=3.1 Score=34.37 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----cC-CCEEEEEech-HHHH-HHHHHHHHcCCCCeEEEEEce
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECS-QMAN-MAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~g-~~~v~~iD~s-~~~~-~a~~~~~~~~~~~~v~~~~~d 80 (306)
.-.|++.|-+ .+...|++.|.-.|..+++.|. .| ..+|.++|++ .-.+ .|++ . .+|.+++++
T Consensus 58 ~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~-p~i~f~egs 126 (237)
T COG3510 58 MWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------V-PDILFIEGS 126 (237)
T ss_pred HHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------C-CCeEEEeCC
Confidence 4456666553 4567999999999877777665 34 2489999998 5433 3332 2 469999999
Q ss_pred eeeec-------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIE-------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~-------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.. +..+.--+.++.--.| .....-+-++...++|.-|..++
T Consensus 127 s~dpai~eqi~~~~~~y~kIfvilDsdH---s~~hvLAel~~~~pllsaG~Y~v 177 (237)
T COG3510 127 STDPAIAEQIRRLKNEYPKIFVILDSDH---SMEHVLAELKLLAPLLSAGDYLV 177 (237)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEecCCc---hHHHHHHHHHHhhhHhhcCceEE
Confidence 87764 1223334444432112 22333345666778888888876
No 339
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.31 E-value=1.6 Score=43.45 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-c-------C-----CCEEEEEech----HHHH-----------HHHHHHHH-----cC
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-A-------G-----AAHVYAVECS----QMAN-----------MAKQIVEA-----NG 69 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~-------g-----~~~v~~iD~s----~~~~-----------~a~~~~~~-----~~ 69 (306)
+.-+|+|+|=|+|...+.+.+ . . .-+++++|.. +-+. .+++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346999999999986555542 1 1 1279999952 1111 11122111 12
Q ss_pred C------CC--eEEEEEceeeeec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 F------SN--VITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 ~------~~--~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ .+ .+++..+|+.+.. +. .++|+++.+.+...-..+-.-+.++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 01 3446667765532 22 569999998654433333344688999999999999987
No 340
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.27 E-value=10 Score=32.76 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH----cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~----~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D 92 (306)
...++..+|+|+|+..-+.++.. .| ..+.+.+|+| .+++...+.+...-..-.+.-+.++.+... +|...--
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 45688999999999866655544 33 4589999999 776654444333222224556666654321 2322222
Q ss_pred EEEE--cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIIS--EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~--~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++. ..+|.+ ..+....++..+...++||-.++
T Consensus 156 l~~flGStlGN~--tp~e~~~Fl~~l~~a~~pGd~~L 190 (321)
T COG4301 156 LFVFLGSTLGNL--TPGECAVFLTQLRGALRPGDYFL 190 (321)
T ss_pred EEEEecccccCC--ChHHHHHHHHHHHhcCCCcceEE
Confidence 2222 233322 33455678888999999998776
No 341
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.18 E-value=0.8 Score=34.84 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=48.4
Q ss_pred CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCceeeEEEEcccccccC
Q 021852 33 GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL 104 (306)
Q Consensus 33 G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~D~iv~~~~~~~~~ 104 (306)
|.|.++..+|+ .| .+|+++|.+ .-.+.+++ .|. + .++..+-.++. .+...+|+|+--. .
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga-~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGA-D--HVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----G 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTE-S--EEEETTTSSHHHHHHHHTTTSSEEEEEESS-----S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hcc-c--ccccccccccccccccccccccceEEEEec-----C
Confidence 35788888888 67 799999988 56666544 443 1 22322222111 2335899998521 1
Q ss_pred CcchHHHHHHHHhhcccCCeEEE
Q 021852 105 FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 105 ~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ...++....+|+++|.++
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v 86 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIV 86 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEE
T ss_pred c----HHHHHHHHHHhccCCEEE
Confidence 1 345556668999999987
No 342
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.72 E-value=4 Score=36.73 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=52.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
..+.++.+||-.|+|. |.++..+|+ .|+ +|++++.+ +-.+.+++ .|... ++.. .+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~~--~~~--~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGGA--YDT--PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---eccc--ccc--CcccceEEE
Confidence 4567899999999864 555555666 566 79999977 55555544 45421 2211 111 124578665
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.. . . ...+....+.|+++|+++
T Consensus 229 ~~~----~----~-~~~~~~~~~~l~~~G~~v 251 (329)
T TIGR02822 229 LFA----P----A-GGLVPPALEALDRGGVLA 251 (329)
T ss_pred ECC----C----c-HHHHHHHHHhhCCCcEEE
Confidence 311 1 1 124555668899999986
No 343
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.71 E-value=4.5 Score=36.03 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEechHHHHHHHHHHHHcCCC--CeEEEEEcee
Q 021852 5 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQMANMAKQIVEANGFS--NVITVLKGKI 81 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 81 (306)
..|++.|.+.+.+...-. ...|+-||||-=.=+..+-. +. .+|+=+|.-++++.=++.++..+.. ..++.+..|+
T Consensus 75 a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl 152 (297)
T COG3315 75 AARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDL 152 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccc
Confidence 457777777777654333 57899999995322222222 22 4777777777888777777777643 3688999998
Q ss_pred eeec----C-----CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 82 EEIE----L-----PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 ~~~~----~-----~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+-. + ....--++++|.+..++ .+.....++..+..+..||-.++
T Consensus 153 ~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL-~~~~v~~ll~~I~~~~~~gS~~~ 206 (297)
T COG3315 153 REDDWPQALAAAGFDRSRPTLWIAEGLLMYL-PEEAVDRLLSRIAALSAPGSRVA 206 (297)
T ss_pred cccchHHHHHhcCCCcCCCeEEEeccccccC-CHHHHHHHHHHHHHhCCCCceEE
Confidence 7432 2 23455688888765555 56677889999988888887776
No 344
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=88.59 E-value=5.2 Score=36.92 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=61.7
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCe-EEEEEceeeeecCCCceeeEEEEcccccccC
Q 021852 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWMGYFLL 104 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~ 104 (306)
.||-++-.-|.++..++..+...+ .|.--.-...+++++.|+++.. ++.+.. .+ ++| +.+|+|+.-+. -
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~-~~~d~vl~~~P----K 116 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDS--TA-DYP-QQPGVVLIKVP----K 116 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecc--cc-ccc-CCCCEEEEEeC----C
Confidence 799999999999999997544211 2321233445788999998643 555532 22 234 56999997542 2
Q ss_pred CcchHHHHHHHHhhcccCCeEEE
Q 021852 105 FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 105 ~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....++..+..+...|.||+.++
T Consensus 117 ~~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 117 TLALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEE
Confidence 23456677788889999999987
No 345
>PRK10458 DNA cytosine methylase; Provisional
Probab=88.48 E-value=2.4 Score=40.30 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---------------
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 87 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------------- 87 (306)
.-+++|+-||.|.+++-+-++|...|.++|++ ..++.-+.+... - .....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~-p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--D-PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--C-CccceeccChhhCccccccccchhhhhhhhh
Confidence 45999999999999999988898889999998 555544444211 0 1233445566554311
Q ss_pred --CceeeEEEEccc
Q 021852 88 --VTKVDIIISEWM 99 (306)
Q Consensus 88 --~~~~D~iv~~~~ 99 (306)
...+|+++..+.
T Consensus 165 ~~~p~~DvL~gGpP 178 (467)
T PRK10458 165 QHIPDHDVLLAGFP 178 (467)
T ss_pred ccCCCCCEEEEcCC
Confidence 125799888643
No 346
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.15 E-value=4.1 Score=36.97 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee----eec--CCCcee
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE----EIE--LPVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~--~~~~~~ 91 (306)
..++.+||-.|+|. |..+..+|+ .|+++|++++.+ +-...++ ..+...-+.....+.. .+. .+...+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 34788999998653 444555555 577689999876 5444443 3344211111111110 010 123569
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++-.. + . ...+....+.|+++|+++
T Consensus 251 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 251 DVVIEAS-G----H----PAAVPEGLELLRRGGTYV 277 (361)
T ss_pred cEEEECC-C----C----hHHHHHHHHHhccCCEEE
Confidence 9988531 1 1 123444557889999987
No 347
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.68 E-value=3.9 Score=36.55 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 87 (306)
..++++|-.|+++|+ ++..+++.|+ +|+.+..+ +-.+.+.+.+....-..++.++..|+.+.. -.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 457899999987763 2444455676 88888866 544444444433221235888888886653 01
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 25789999874
No 348
>PLN02740 Alcohol dehydrogenase-like
Probab=87.63 E-value=1.6 Score=40.22 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=33.8
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
..+.+|.+||-.|+|. |.++..+|+ .|+.+|+++|.+ +-++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4577899999999875 666666666 677689999987 66666644
No 349
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.55 E-value=4.5 Score=37.54 Aligned_cols=101 Identities=25% Similarity=0.178 Sum_probs=56.8
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc---eeee-ec--CCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~~~-~~--~~~~ 89 (306)
..+.++.+||-.|+|. |.++..+|+ .|++.|+++|.+ +-++.|++ .|. + .+... +..+ +. ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHcCCC
Confidence 4467788998888875 666666666 688778877876 55666554 343 2 12211 1111 11 1234
Q ss_pred eeeEEEEccccccc------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++-- .+.-- ..+......+....++++++|.++
T Consensus 254 g~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~ 296 (393)
T TIGR02819 254 EVDCAVDC-VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIG 296 (393)
T ss_pred CCcEEEEC-CCCccccccccccccchHHHHHHHHHHhhCCCEEE
Confidence 68988853 22100 000111235555668999999987
No 350
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=87.50 E-value=5.2 Score=36.80 Aligned_cols=96 Identities=27% Similarity=0.274 Sum_probs=53.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc---e----eeeecCCC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG---K----IEEIELPV 88 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d----~~~~~~~~ 88 (306)
..+.++.+||-.|+|. |..++.+|+ .|+.+|++++.+ +-.+.++ ..|...-+..... + +..+ .+.
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHHHHh-cCC
Confidence 3567888999887754 444555555 677689999976 5433433 3344211111110 1 1111 233
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+.. .+ .....+....+.|+++|+++
T Consensus 274 ~gvDvvld~-~g-------~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 274 WGADIQVEA-AG-------APPATIPQMEKSIAINGKIV 304 (384)
T ss_pred CCCCEEEEC-CC-------CcHHHHHHHHHHHHcCCEEE
Confidence 569998853 11 11223445567889999987
No 351
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.48 E-value=2.9 Score=37.65 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=53.3
Q ss_pred cCCCC--CEEEEEcC--CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCC
Q 021852 20 FLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPV 88 (306)
Q Consensus 20 ~~~~~--~~VLDlG~--G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 88 (306)
.+.++ .+||-.|+ |.|..+..+|+ .|+.+|++++.+ +..+.+++. .|... ++...-.++. +..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~---vi~~~~~~~~~~i~~~~~ 222 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDA---AINYKTDNVAERLRELCP 222 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcE---EEECCCCCHHHHHHHHCC
Confidence 35555 89999986 34667777777 576689999877 555555432 34421 2221111110 122
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-. .+ . . .+....+.|+++|.++
T Consensus 223 ~gvd~vid~-~g----~-~----~~~~~~~~l~~~G~iv 251 (345)
T cd08293 223 EGVDVYFDN-VG----G-E----ISDTVISQMNENSHII 251 (345)
T ss_pred CCceEEEEC-CC----c-H----HHHHHHHHhccCCEEE
Confidence 569999852 11 1 1 1244557899999987
No 352
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.47 E-value=1.8 Score=39.67 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=33.7
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
..+.++.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-.+.+++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567899999999875 666666677 677789999987 66666644
No 353
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=87.43 E-value=2.9 Score=37.77 Aligned_cols=96 Identities=23% Similarity=0.263 Sum_probs=53.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee-eec--CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE-EIE--LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~--~~~~~~D 92 (306)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +..+.+++ .+...-+.....+.. .+. .+...+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 4567889999998653 444455555 577689999876 66665543 243211111111111 010 1224599
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++-.. + . ...+....+.|+++|.++
T Consensus 244 ~vid~~-g----~----~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 244 VSFDCA-G----V----QATLDTAIDALRPRGTAV 269 (351)
T ss_pred EEEECC-C----C----HHHHHHHHHhccCCCEEE
Confidence 998531 1 1 123445567899999887
No 354
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.25 E-value=3.7 Score=33.59 Aligned_cols=92 Identities=24% Similarity=0.268 Sum_probs=57.0
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH--------cCCC--------CeEEEEEceeeeecC
Q 021852 26 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA--------NGFS--------NVITVLKGKIEEIEL 86 (306)
Q Consensus 26 ~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~--------~~~~--------~~v~~~~~d~~~~~~ 86 (306)
+|.-+|+|+ | .++..++..|. +|+.+|.+ +.++.+++.++. ..+. .++++. .|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH--
Confidence 467789987 4 55667777776 99999988 777777665543 1111 234432 344433
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+=... ........++.++.+.+.|+.++.
T Consensus 77 --~~adlViEai~----E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 77 --VDADLVIEAIP----EDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp --CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred --hhhheehhhcc----ccHHHHHHHHHHHHHHhCCCceEE
Confidence 25898885432 233456688889999999998886
No 355
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.13 E-value=13 Score=29.94 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=63.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec-CC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-LP 87 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~ 87 (306)
+...+.+.+. ..++.+|+-|||=|-...+.-......+++..|.+. +.+..+ ++ .++.=|..... ++
T Consensus 13 ~~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 13 EFLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhh
Confidence 3444555532 345689999999884444443223455899999882 222211 22 34433433211 11
Q ss_pred ---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 ---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++|+||+++. | ..+..+......+..++++++.++
T Consensus 81 ~~l~~~~d~vv~DPP--F-l~~ec~~k~a~ti~~L~k~~~kii 120 (162)
T PF10237_consen 81 EELKGKFDVVVIDPP--F-LSEECLTKTAETIRLLLKPGGKII 120 (162)
T ss_pred hhcCCCceEEEECCC--C-CCHHHHHHHHHHHHHHhCccceEE
Confidence 369999999985 2 466777777788877889988887
No 356
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=87.13 E-value=4.4 Score=36.80 Aligned_cols=95 Identities=21% Similarity=0.156 Sum_probs=55.1
Q ss_pred ccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeee-ec-CCCcee
Q 021852 19 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEE-IE-LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~~-~~~~~~ 91 (306)
..+.+|.+||-.|+ | .|.++..+|+ .|+ +|++++.+ +-.+.+++ ..|...-+..... +..+ +. .....+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 45678999999998 3 4777777777 566 79998876 55555432 2344211111111 1111 10 112468
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++-. . +. ..+....+.|+++|.++
T Consensus 230 D~v~d~-v-----G~----~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 230 DIYFDN-V-----GG----DMLDAALLNMKIHGRIA 255 (348)
T ss_pred EEEEEC-C-----CH----HHHHHHHHHhccCCEEE
Confidence 998842 1 11 23445567899999987
No 357
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.09 E-value=6.5 Score=32.80 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 55 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s 55 (306)
+..+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467899999996 3 45777888898889988865
No 358
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.88 E-value=1.1 Score=40.95 Aligned_cols=93 Identities=25% Similarity=0.302 Sum_probs=54.5
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ec-CCCce
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~ 90 (306)
..+.++.+||-.|+|. |.++..+|+ .|+.+|++++.+ ...+.+++ .+. + .++..+-.+ +. .....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~-~--~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA-T--HVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC-c--EEecCCCcCHHHHHHHHhCCC
Confidence 3456789999998764 566666666 677789999987 55555443 232 1 222211111 10 11356
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+-.. + .. ..+....+.|+++|.++
T Consensus 255 ~d~vld~~-g----~~----~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 255 VDYALDTT-G----VP----AVIEQAVDALAPRGTLA 282 (365)
T ss_pred CcEEEECC-C----Cc----HHHHHHHHHhccCCEEE
Confidence 89988531 1 11 23445567889999887
No 359
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.79 E-value=5.9 Score=35.56 Aligned_cols=96 Identities=27% Similarity=0.366 Sum_probs=52.8
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ec--CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~~~D 92 (306)
....++.+||..|+|. |..+..+|+ .|..+|++++.+ ...+.+++ .+....+.....+..+ +. .+...+|
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 3456788999977653 555666666 565588898766 45554443 2321111111111111 10 2335799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++... + . ...+....+.|+++|+++
T Consensus 239 ~vld~~-g----~----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 239 CVIEAV-G----F----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred EEEEcc-C----C----HHHHHHHHHHhhcCCEEE
Confidence 988531 1 1 124555567889999987
No 360
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.66 E-value=2.6 Score=38.01 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=54.6
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce----eeee--cCCC
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK----IEEI--ELPV 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~~--~~~~ 88 (306)
...+.++.+||-.|+|. |..+..+|+ .|++.|++++.+ +..+.+++. +...-+.....+ ...+ ..+.
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCC
Confidence 35567889999987764 555556666 577558998876 555555432 331111111111 1111 1233
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-.. + . ...+....+.|+++|.++
T Consensus 233 ~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 233 KGPDVVIECT-G----A----ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 5699998531 1 1 113445567889999887
No 361
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.59 E-value=1.8 Score=39.30 Aligned_cols=76 Identities=28% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEechH----------------------HHHHHHHHHHHcCCCCeEEEE
Q 021852 22 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVL 77 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s~----------------------~~~~a~~~~~~~~~~~~v~~~ 77 (306)
..+++||-+|||. | .++..++++|..+++.+|.+. -++.|++.+++.+-.-+++.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999995 3 456777888998999998641 234455555554433346666
Q ss_pred EceeeeecCC--CceeeEEEEc
Q 021852 78 KGKIEEIELP--VTKVDIIISE 97 (306)
Q Consensus 78 ~~d~~~~~~~--~~~~D~iv~~ 97 (306)
..++..-.+. -..+|+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEc
Confidence 5554321111 2569999974
No 362
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.30 E-value=5.5 Score=35.53 Aligned_cols=94 Identities=26% Similarity=0.244 Sum_probs=54.5
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----cCCCce
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~ 90 (306)
...+.++.+||..|+|. |..+..+|+ .|.++|++++.+ +..+.+++ .+.. .++..+-.+. ..+...
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCC
Confidence 34567889999998653 455555556 566558888877 66655533 2332 2222221111 123357
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++... + . ...+....+.|+++|.++
T Consensus 227 vd~v~~~~-~----~----~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 227 FDVVIEAT-G----V----PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred CcEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 99999631 1 1 124444567889999886
No 363
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.93 E-value=6 Score=31.00 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
.+.+++++.....++++|+-+|+|. | .++..+++.|...|+.+|.+ +-.+...+...... +.....+..+.
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~-- 78 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL-- 78 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--
Confidence 3556666543335678999999874 1 22333344555689999977 44433333322111 11112222222
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
.+.+|+|++..
T Consensus 79 -~~~~Dvvi~~~ 89 (155)
T cd01065 79 -LAEADLIINTT 89 (155)
T ss_pred -cccCCEEEeCc
Confidence 26789999864
No 364
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=85.73 E-value=8.2 Score=34.79 Aligned_cols=91 Identities=25% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ec-CCCceee
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTKVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~~D 92 (306)
..++.+||-.|+|. |..+..+|+ .|+++|++++.+ +..+.+++ .|. + .++...-.+ +. ...+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~-~--~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGA-D--VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC-c--EEecCCCccHHHHHHHHhCCCCc
Confidence 34788999997654 555555566 677789999876 55555533 243 1 222221111 11 1113689
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++... + . ...+....+.|+++|.++
T Consensus 246 ~vid~~-g----~----~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 246 AVIDFV-N----N----SATASLAFDILAKGGKLV 271 (350)
T ss_pred EEEECC-C----C----HHHHHHHHHHhhcCCeEE
Confidence 998531 1 1 123455567889999887
No 365
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=85.61 E-value=4.9 Score=36.70 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HH-HHHHHHHHHHcCCCCeEEEEEc-eeeeecCCCceeeEEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QM-ANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~-~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~D~iv 95 (306)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.+ +- ...++ +.|.. .++.. +...+....+.+|+++
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN----RLGAD---SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH----hCCCc---EEEcCCCHHHHHhhcCCCCEEE
Confidence 45788999999875 666666777 566 78888865 32 22222 23431 12211 1111110012489888
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-. .+ . ...+....+.|+++|.++
T Consensus 253 d~-~g-------~-~~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 253 DT-VS-------A-VHALGPLLGLLKVNGKLI 275 (360)
T ss_pred EC-CC-------C-HHHHHHHHHHhcCCcEEE
Confidence 42 21 1 123444567899999987
No 366
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.48 E-value=4 Score=37.01 Aligned_cols=44 Identities=34% Similarity=0.379 Sum_probs=32.6
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
..+.++.+||-.|+|. |.++..+|+ .|+ +|++++.+ +.++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567899999999965 666666676 566 79999977 66666643
No 367
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.35 E-value=2.8 Score=35.05 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech
Q 021852 22 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 55 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s 55 (306)
..+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999995 4 45667778899999999855
No 368
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.11 E-value=4 Score=37.06 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc---------CCCEEEEEech-HHHHHHHHHHHH
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECS-QMANMAKQIVEA 67 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~---------g~~~v~~iD~s-~~~~~a~~~~~~ 67 (306)
......++++|+|+|.++.-+.+. .+.+++.||.| +....-+++++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 344568999999999987655441 25689999999 666555555553
No 369
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.92 E-value=14 Score=31.06 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----C
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP-----V 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 88 (306)
++++||-.|++.|. ++..+++.|+ +|++++.+ +-+..+.+..... .++.++.+|+.+.. +. .
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56799999987542 2333344666 89999976 4444443333322 25778888876532 00 1
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3578888764
No 370
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.92 E-value=6.8 Score=34.95 Aligned_cols=96 Identities=18% Similarity=0.096 Sum_probs=54.9
Q ss_pred hcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeeee--cCCCc
Q 021852 17 QNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEEI--ELPVT 89 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--~~~~~ 89 (306)
....+.+|.+||-.|+ | .|.++..+|+ .|+ +|++++.+ +-.+.+++ .|...-+..... +..+. ....+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCC
Confidence 3355778999999985 3 4677777777 566 79988876 55555533 454211111110 11111 01234
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++-. .+ . . .+....+.|+++|+++
T Consensus 207 gvdvv~d~-~G----~----~-~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 207 GYDCYFDN-VG----G----E-FSNTVIGQMKKFGRIA 234 (325)
T ss_pred CeEEEEEC-CC----H----H-HHHHHHHHhCcCcEEE
Confidence 69998842 11 1 1 2344557899999987
No 371
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.86 E-value=7.1 Score=36.65 Aligned_cols=92 Identities=26% Similarity=0.271 Sum_probs=52.4
Q ss_pred HHHHhccc-CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 13 NVIYQNKF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 13 ~ai~~~~~-~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
++|.+... ...|++|+-+|+|. |......++ .|+ +|+.+|.+ .....+. ..|. ++. ++.+..
T Consensus 200 ~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~----~~G~----~v~--~l~eal--- 265 (425)
T PRK05476 200 DGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAA----MDGF----RVM--TMEEAA--- 265 (425)
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHH----hcCC----Eec--CHHHHH---
Confidence 44444322 34899999999987 444333333 666 89999987 3322221 1232 222 233321
Q ss_pred ceeeEEEEcccccccCCcchHHHHHH-HHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLY-ARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~-~~~~~L~p~G~~i 127 (306)
..+|+|+... +.. .++. .....+|+|++++
T Consensus 266 ~~aDVVI~aT--------G~~-~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 266 ELGDIFVTAT--------GNK-DVITAEHMEAMKDGAILA 296 (425)
T ss_pred hCCCEEEECC--------CCH-HHHHHHHHhcCCCCCEEE
Confidence 3689998742 122 2333 4567889999887
No 372
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.75 E-value=8.1 Score=34.88 Aligned_cols=95 Identities=25% Similarity=0.182 Sum_probs=54.7
Q ss_pred cccCCCCCEEEEEcCCC--cHHHHHHHH-cCCCEEEEEec-hHHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCce
Q 021852 18 NKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~-s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~ 90 (306)
...+.+|.+||-.|+.. |.+++.+|+ .|+ .++++-. ++-.+.++ +.|-..-+.+...|+.+-. .....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 45577899999999544 577888888 566 5555554 44333443 3454323333333332211 23347
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+-.. +. ..+....+.|+++|.++
T Consensus 212 vDvv~D~v------G~----~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 212 VDVVLDTV------GG----DTFAASLAALAPGGRLV 238 (326)
T ss_pred ceEEEECC------CH----HHHHHHHHHhccCCEEE
Confidence 99999632 11 23333457889999987
No 373
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.63 E-value=3.2 Score=35.30 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHHHHhccc--CCCCCEEEEEcCCCcHHH--HHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeE
Q 021852 1 MLKDVVRTKSYQNVIYQNKF--LFKDKVVLDVGAGTGILS--LFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVI 74 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~--~~~~~~VLDlG~G~G~l~--~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v 74 (306)
||+|..+.. |.+-.....- ..++.+||-+|+|.-..- ..+.+.|+. .|++-+.+ ++...++ . +++
T Consensus 1 ~~~~~~~~~-~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-----~---~~i 71 (223)
T PRK05562 1 MLKDNKEDI-YNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-----Y---GNL 71 (223)
T ss_pred CCcchhhHH-hhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-----C---CCE
Confidence 788877633 3322111111 135789999999985442 234456663 34444666 5544432 1 358
Q ss_pred EEEEceeeeecCCCceeeEEEEc
Q 021852 75 TVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 75 ~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
+++..+.+.-.+ ..+++|++.
T Consensus 72 ~~~~r~~~~~dl--~g~~LViaA 92 (223)
T PRK05562 72 KLIKGNYDKEFI--KDKHLIVIA 92 (223)
T ss_pred EEEeCCCChHHh--CCCcEEEEC
Confidence 888877654433 357888874
No 374
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=84.35 E-value=6.6 Score=35.83 Aligned_cols=95 Identities=22% Similarity=0.221 Sum_probs=53.4
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc--ee----eeecCCC
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG--KI----EEIELPV 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~----~~~~~~~ 88 (306)
...+.++.+||-.|+|. |.++..+|+ .|+..|++++.+ +..+.+++ .|....+..... +. .++ .+
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~-~~- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEM-TD- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHH-hC-
Confidence 34567889999998754 455555566 677678999866 65555533 233211111111 11 111 23
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhccc-CCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLV-DDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~-p~G~~i 127 (306)
+.+|+++-. .+ . ...+....+.|+ ++|.++
T Consensus 252 ~~~d~vid~-~g----~----~~~~~~~~~~l~~~~G~~v 282 (365)
T cd05279 252 GGVDYAFEV-IG----S----ADTLKQALDATRLGGGTSV 282 (365)
T ss_pred CCCcEEEEC-CC----C----HHHHHHHHHHhccCCCEEE
Confidence 568998852 11 1 123344457788 999987
No 375
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=84.34 E-value=7.9 Score=35.25 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=52.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee------cCCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI------ELPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~ 89 (306)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +..+.+++ .+.. .++..+-.++ ..+..
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~ 255 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGR 255 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCC
Confidence 3446788888876542 444455555 577669999876 55555533 2331 2222221111 12345
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+|+... ... ..+....+.|+++|.++
T Consensus 256 ~~d~vld~v-----g~~----~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 256 GVDVVVEAL-----GKP----ETFKLALDVVRDGGRAV 284 (367)
T ss_pred CCCEEEEeC-----CCH----HHHHHHHHHHhcCCEEE
Confidence 699998532 111 13445568899999987
No 376
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.31 E-value=4.2 Score=34.29 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-------------------HHHHHHHHHHHHcCCCCeEEEEEcee
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------QMANMAKQIVEANGFSNVITVLKGKI 81 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 81 (306)
+..+|+-+|||. | .++..+++.|..+++.+|.+ .-++.+++++++.+..-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 567899999995 4 55777788899899998865 12344555555444333455555444
Q ss_pred eeecCC--CceeeEEEEc
Q 021852 82 EEIELP--VTKVDIIISE 97 (306)
Q Consensus 82 ~~~~~~--~~~~D~iv~~ 97 (306)
.+...+ -..+|+|+..
T Consensus 107 ~~~~~~~~~~~~DvVI~a 124 (212)
T PRK08644 107 DEDNIEELFKDCDIVVEA 124 (212)
T ss_pred CHHHHHHHHcCCCEEEEC
Confidence 331110 1468999963
No 377
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.99 E-value=2.8 Score=38.12 Aligned_cols=76 Identities=30% Similarity=0.375 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech----------------------HHHHHHHHHHHHcCCCCeEEEE
Q 021852 22 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS----------------------QMANMAKQIVEANGFSNVITVL 77 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s----------------------~~~~~a~~~~~~~~~~~~v~~~ 77 (306)
...++||-+|||. | .++..+++.|..+++.+|.+ .-++.+++.+++.+-.-+++.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999995 4 45677788899999999964 1223344455443322245555
Q ss_pred EceeeeecCC--CceeeEEEEc
Q 021852 78 KGKIEEIELP--VTKVDIIISE 97 (306)
Q Consensus 78 ~~d~~~~~~~--~~~~D~iv~~ 97 (306)
..++..-... -..+|+|+.-
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIIDA 123 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEEc
Confidence 5554321100 2568999974
No 378
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=83.90 E-value=4 Score=35.30 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=46.9
Q ss_pred ccCCCCCEEEEEcCCC--c--HHHHHHHH-cC-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 19 KFLFKDKVVLDVGAGT--G--ILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~--G--~l~~~~a~-~g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
..+....+||-+|+|+ | .-+..+.| .+ .+.++-.|+.+.+ . +--..+.+|...+..+ .++|
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------S-----Da~~~~~~Dc~t~~~~-~k~D 123 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------S-----DADQSIVGDCRTYMPP-DKFD 123 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-GGGEEES-S-EE
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------c-----ccCCceeccccccCCC-Cccc
Confidence 4567789999999997 3 22444445 22 2245555554321 1 1224566788877655 9999
Q ss_pred EEEEcccc--------cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMG--------YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~--------~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|++-+ .....++-...+..-+...|+-||.+.
T Consensus 124 lIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 124 LIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp EEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 99998741 112234445566666778889999875
No 379
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.69 E-value=3.4 Score=35.16 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--------------------HHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--------------------QMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--------------------~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
...+|+-+|||. | ..+..+++.|.++++.+|.+ .-++.+++++++.+-.-+++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 467999999995 3 55677788899899988532 2234455555554432346666555
Q ss_pred eeeecCC--CceeeEEEEc
Q 021852 81 IEEIELP--VTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~~~--~~~~D~iv~~ 97 (306)
+....+. -..+|+|+..
T Consensus 100 i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 100 LDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eCHHHHHHHHhCCCEEEEc
Confidence 4221111 1459999974
No 380
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.58 E-value=0.15 Score=40.31 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=31.7
Q ss_pred ecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.++++|+|.++-+..++.. .....+++.+.++|||||.+-
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~Lr 83 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLR 83 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEE
Confidence 3467799999999855444432 344567888999999999974
No 381
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=83.47 E-value=10 Score=35.33 Aligned_cols=84 Identities=30% Similarity=0.301 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEechH-HHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
...|++|+-+|+|. |......++ .|+ +|+++|.++ -...|+ ..|. .+. +.++. + ...|+|++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~----~~G~----~v~--~leea-l--~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAA----MDGF----RVM--TMEEA-A--KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHH----hcCC----EeC--CHHHH-H--hcCCEEEEC
Confidence 46899999999998 555444555 566 799999873 222221 2233 222 22222 1 457998873
Q ss_pred ccccccCCcchHHHHH-HHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVL-YARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l-~~~~~~L~p~G~~i 127 (306)
. +. ..++ ......+|+|++++
T Consensus 258 T--------G~-~~vI~~~~~~~mK~Gaili 279 (406)
T TIGR00936 258 T--------GN-KDVIRGEHFENMKDGAIVA 279 (406)
T ss_pred C--------CC-HHHHHHHHHhcCCCCcEEE
Confidence 2 12 2233 33567889999887
No 382
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=83.41 E-value=0.56 Score=34.93 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=25.8
Q ss_pred eeeEEEEcccccc---cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYF---LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~---~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|+|-.+--. -.+..-+..++..+...|+|||.+|
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li 41 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI 41 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE
Confidence 4899998422111 1133456678999999999999998
No 383
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.22 E-value=8.1 Score=28.60 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHH---cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEEccccccc
Q 021852 32 AGTGILSLFCAK---AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFL 103 (306)
Q Consensus 32 ~G~G~l~~~~a~---~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~~~~~~~~ 103 (306)
||.|.++..+++ .+...|+.+|.+ +.++.+++ .+ +.++.+|..+.. ..-.++|.+++-.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 444556665554 334489999998 66655543 22 578999987654 2346889888742
Q ss_pred CCcchHHHHHHHHhhcccCCeEEE
Q 021852 104 LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 104 ~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
........+-...+-+.|...++
T Consensus 71 -~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 71 -DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp -SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred -CCHHHHHHHHHHHHHHCCCCeEE
Confidence 12222222333345566776665
No 384
>PRK07904 short chain dehydrogenase; Provisional
Probab=83.14 E-value=8.1 Score=33.21 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCCCCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-H-HHHHHHHHHHHcCCCCeEEEEEceeeeec---------C
Q 021852 21 LFKDKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE---------L 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~ 86 (306)
+..+++||-.|+++|+= +..+++.|..+|+.++.+ + .++.+.+.++..+- .++.++.+|+.+.. .
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence 45677899999876532 333344554589998866 4 35554444554432 35888888886533 1
Q ss_pred CCceeeEEEEc
Q 021852 87 PVTKVDIIISE 97 (306)
Q Consensus 87 ~~~~~D~iv~~ 97 (306)
..+..|+++.+
T Consensus 84 ~~g~id~li~~ 94 (253)
T PRK07904 84 AGGDVDVAIVA 94 (253)
T ss_pred hcCCCCEEEEe
Confidence 12479988875
No 385
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.93 E-value=6 Score=33.40 Aligned_cols=67 Identities=31% Similarity=0.376 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHH----cCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----------
Q 021852 23 KDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIE----------- 85 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~----~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 85 (306)
..+.||-.||..|.++..+|+ .|. .|+|+--+ .|.+.+.+. | +.....|+.+-.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~----g----l~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF----G----LKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh----C----CeeEEeccCChHHHHHHHHHHhh
Confidence 467899999999988777765 455 89999865 687777442 2 334444443221
Q ss_pred CCCceeeEEEEcc
Q 021852 86 LPVTKVDIIISEW 98 (306)
Q Consensus 86 ~~~~~~D~iv~~~ 98 (306)
.+.++.|+++.+.
T Consensus 77 ~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 77 NPDGKLDLLYNNA 89 (289)
T ss_pred CCCCceEEEEcCC
Confidence 3678999998864
No 386
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.85 E-value=17 Score=32.04 Aligned_cols=75 Identities=29% Similarity=0.439 Sum_probs=45.0
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC---
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP--- 87 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--- 87 (306)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ ...+...+.++..+ .++.++.+|+.+.. +.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 3457899999987653 2344455666 78888754 23333333444333 35788888886543 11
Q ss_pred --CceeeEEEEcc
Q 021852 88 --VTKVDIIISEW 98 (306)
Q Consensus 88 --~~~~D~iv~~~ 98 (306)
..++|++|.+.
T Consensus 120 ~~~~~iD~lI~~A 132 (290)
T PRK06701 120 RELGRLDILVNNA 132 (290)
T ss_pred HHcCCCCEEEECC
Confidence 13689998754
No 387
>PLN02494 adenosylhomocysteinase
Probab=82.49 E-value=6.3 Score=37.40 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=53.9
Q ss_pred HHHHHHhccc-CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 11 YQNVIYQNKF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 11 ~~~ai~~~~~-~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
..++|.+... ...|++|+-+|+|. |......++ .|+ +|+++|.+ .-...+. ..|. .+. ++.+. +
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~----~~G~----~vv--~leEa-l 307 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQAL----MEGY----QVL--TLEDV-V 307 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHH----hcCC----eec--cHHHH-H
Confidence 3455554322 36799999999997 544333344 566 89999987 3222322 2233 122 23332 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...|+|+... +....+.......+|+||+++
T Consensus 308 --~~ADVVI~tT--------Gt~~vI~~e~L~~MK~GAiLi 338 (477)
T PLN02494 308 --SEADIFVTTT--------GNKDIIMVDHMRKMKNNAIVC 338 (477)
T ss_pred --hhCCEEEECC--------CCccchHHHHHhcCCCCCEEE
Confidence 3579998732 111122244557899999997
No 388
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.48 E-value=8.4 Score=33.97 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=54.1
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc--------CCC---------CeEEEEEceeeee
Q 021852 25 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN--------GFS---------NVITVLKGKIEEI 84 (306)
Q Consensus 25 ~~VLDlG~G~G--~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~ 84 (306)
.+|.-||+|+- .++..+++.|. +|+.+|.+ +.++.+++.+++. .+. .++++. .+..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 46888999862 44555666665 89999988 6666665543211 111 123322 222221
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-...|+|+.... ........++..+...++++.++.
T Consensus 82 ---~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 146799887532 112245567777777787777653
No 389
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.47 E-value=9.6 Score=34.37 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=56.4
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHH-------HcCCC-----CeEEEEEceeeeecCCCc
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVE-------ANGFS-----NVITVLKGKIEEIELPVT 89 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~-------~~~~~-----~~v~~~~~d~~~~~~~~~ 89 (306)
++|--||+|+ ..++..++.+|. .|+..|.+ +.++.+++.++ +.++. .++++.. ++++. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5799999996 355666677776 99999988 66655544332 22221 1233322 22211 14
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+|+-... ........++..+.+.++|+.++-
T Consensus 83 ~aDlViEavp----E~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 83 DADFIQESAP----EREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CCCEEEECCc----CCHHHHHHHHHHHHHhCCCCeEEE
Confidence 6898886432 222445577788888999987443
No 390
>PLN02827 Alcohol dehydrogenase-like
Probab=82.35 E-value=4.2 Score=37.44 Aligned_cols=96 Identities=23% Similarity=0.257 Sum_probs=54.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE--ceeee-ec-CCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK--GKIEE-IE-LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~-~~-~~~~~~ 91 (306)
..+.++.+||-.|+|. |.++..+|+ .|+..|+++|.+ +-.+.|++ .|...-+.... .+..+ +. +..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998865 566666666 677789999976 65555533 34421111111 01111 10 112368
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
|+|+-. .+ . +..+....+.+++| |+++
T Consensus 265 d~vid~-~G----~----~~~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 265 DYSFEC-VG----D----TGIATTALQSCSDGWGLTV 292 (378)
T ss_pred CEEEEC-CC----C----hHHHHHHHHhhccCCCEEE
Confidence 988852 11 1 11233445778898 9886
No 391
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=82.27 E-value=5.6 Score=33.11 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--QM------------------ANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
..++||-+|||. | ..+..++..|.++++.+|.+ +. ++.+++.+++.+-.-+++.+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 467899999986 2 44566677899999999854 21 33445555544432345555544
Q ss_pred eeeec--CCCceeeEEEEc
Q 021852 81 IEEIE--LPVTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~--~~~~~~D~iv~~ 97 (306)
+.+.. + -..+|+|++.
T Consensus 100 ~~~~~~~~-~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEF-FSQFDVVVAT 117 (197)
T ss_pred ccccHHHH-HhCCCEEEEC
Confidence 43221 1 1579999974
No 392
>PRK07063 short chain dehydrogenase; Provisional
Probab=82.27 E-value=8.5 Score=33.00 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.+...+...++.++.+|+.+.. + .
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999987653 3444555676 79999976 555555455544222346888888886543 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+.+|++|.+.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 24689999864
No 393
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.26 E-value=5.9 Score=34.28 Aligned_cols=92 Identities=24% Similarity=0.232 Sum_probs=53.5
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....++.+||-.|+|. |..+..+|+ .|..+|++++.+ +..+.+++. +..+.+ +... ... .+...+|+++
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~-~~~~~~d~vl 164 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADE-IGGRGADVVI 164 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhh-hcCCCCCEEE
Confidence 4567889999998765 555566666 566559999976 666655542 311111 1110 011 1335689988
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... .. ...+....+.|+++|.++
T Consensus 165 ~~~-----~~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 165 EAS-----GS----PSALETALRLLRDRGRVV 187 (277)
T ss_pred Ecc-----CC----hHHHHHHHHHhcCCcEEE
Confidence 531 11 123444567889999886
No 394
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=82.18 E-value=9 Score=33.95 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=51.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....++.+||-.|+|. |..+..+++ .|+ +|++++.+ +..+.+++ .|... +... .+. .+...+|+++
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~-~~~~----~~~-~~~~~~d~vi 219 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVET-VLPD----EAE-SEGGGFDVVV 219 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcE-EeCc----ccc-ccCCCCCEEE
Confidence 4567789999997643 344444455 566 58888876 66666654 34421 1111 111 2346799998
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.. .. ...+....+.|+++|.++
T Consensus 220 d~~-----g~----~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 220 EAT-----GS----PSGLELALRLVRPRGTVV 242 (319)
T ss_pred ECC-----CC----hHHHHHHHHHhhcCCEEE
Confidence 521 11 123344456789999887
No 395
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=82.17 E-value=9.7 Score=34.21 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=52.5
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee----eeecCCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI----EEIELPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~~ 91 (306)
..+.++.+||-.|+|. |..+..+|+ .|..+|++++.+ .....+++ .+...-+.....+. ..+ .+...+
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~ 236 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLEL-TDGRGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHH-hCCCCC
Confidence 3456788888887643 344444555 565689999876 44444443 34321122211111 111 233569
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++... .. ...+....+.|+++|.++
T Consensus 237 d~vld~~--------g~-~~~~~~~~~~l~~~g~~v 263 (345)
T cd08286 237 DVVIEAV--------GI-PATFELCQELVAPGGHIA 263 (345)
T ss_pred CEEEECC--------CC-HHHHHHHHHhccCCcEEE
Confidence 9988532 11 123555668899999987
No 396
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.10 E-value=10 Score=33.43 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=54.8
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc----------CC---------CCeEEEEEceee
Q 021852 25 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN----------GF---------SNVITVLKGKIE 82 (306)
Q Consensus 25 ~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~----------~~---------~~~v~~~~~d~~ 82 (306)
.+|.-+|+|. | .++..+++.|. +|+.+|.+ +.++.+++.++.. +. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899996 3 45666677776 89999988 7777665543321 11 0112221 1111
Q ss_pred eecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. -..+|+|+-... ........++..+.+.++|+.+++
T Consensus 82 ~----~~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 145798886432 111235677777778888887665
No 397
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=81.99 E-value=12 Score=33.13 Aligned_cols=92 Identities=22% Similarity=0.095 Sum_probs=54.2
Q ss_pred cccCCCCCEEEEEcC--CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCC
Q 021852 18 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPV 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~--G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 88 (306)
.....+|.+||-.|+ |.|.++..+|+ .|+ +|++++.+ +-.+.+++ .|.. .++...-.++. ...
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCC
Confidence 345678999999985 33666776777 566 79998876 65555543 3442 12221111110 122
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-.. + . ..+....+.|+++|.++
T Consensus 210 ~gvd~vld~~------g--~--~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 210 DGIDCYFDNV------G--G--EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred CCcEEEEECC------C--H--HHHHHHHHhhccCCEEE
Confidence 5699988421 1 1 23345567889999987
No 398
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.86 E-value=7.1 Score=34.44 Aligned_cols=77 Identities=26% Similarity=0.310 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CCC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 88 (306)
..+++||-=||.+|+ ++..++++|++.|..+=...-++...+.+++.+-.+++.++.+|+.+.. ..-
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 468899999999984 4666677888544433333444444344444443336899999997764 124
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+.+|++|.|.
T Consensus 90 g~vDvLVNNA 99 (282)
T KOG1205|consen 90 GRVDVLVNNA 99 (282)
T ss_pred CCCCEEEecC
Confidence 6899999974
No 399
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=81.85 E-value=2.9 Score=38.49 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 23 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 23 ~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
++.+|+-+|+|. |..+...++ .|+ +|+++|.+ +-++.+.+.. + ..+.....+..++.---..+|+|+....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 456799999985 555555454 677 79999987 5444333221 1 1122111111111100146899997531
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ....-+-....+.++|+++++
T Consensus 240 ~~g~---~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 240 IPGA---KAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred cCCC---CCCcCcCHHHHhcCCCCCEEE
Confidence 1000 001111133345678998876
No 400
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.79 E-value=4.4 Score=36.99 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=32.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
..+.++.+||-.|+|. |.++..+|+ .|+++|++++.+ +..+.+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567899999998764 555555566 577689999977 66665543
No 401
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.69 E-value=13 Score=33.10 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHH-HcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGT-GILSLFCA-KAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~a-~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..+++|+-+|.|. |......+ ..|+ +|+++|.+ +....+ +..+. +++. ..++.---..+|+|+.-.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~----~~~G~----~~~~--~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARI----TEMGL----SPFH--LSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH----HHcCC----eeec--HHHHHHHhCCCCEEEECC
Confidence 3689999999986 33333333 3676 99999987 433333 23342 2221 111110114689999742
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. . ..+-......++|++.++
T Consensus 219 p-~--------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 219 P-A--------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred C-h--------hhhhHHHHHcCCCCcEEE
Confidence 1 1 112233446788988877
No 402
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=81.41 E-value=7.5 Score=34.68 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=53.0
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC----CeEEEEEceeeeecCCCceeeEEEEc
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.+|+-+|+|. |.++..+++.|. .|+.++.+ +.++..++ .+|+. ............ .-+.+.+|+|+.-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence 4699999997 567888888876 79999876 44444332 22321 000010000000 0112578988863
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. -.......+..+..++.++..++
T Consensus 78 v------K~~~~~~al~~l~~~l~~~t~vv 101 (305)
T PRK05708 78 C------KAYDAEPAVASLAHRLAPGAELL 101 (305)
T ss_pred C------CHHhHHHHHHHHHhhCCCCCEEE
Confidence 2 11245567777888888888776
No 403
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=81.24 E-value=5.1 Score=36.59 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=54.0
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc--eeee-e-cCCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~~~-~-~~~~~~~ 91 (306)
..+.++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +-.+.+++ .|...-+..... +..+ + .+....+
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998764 555666666 677689999987 66665543 343211111110 0111 0 0122368
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
|+|+-. .+ . ...+....+.|+++ |+++
T Consensus 258 d~vid~-~g----~----~~~~~~a~~~l~~~~G~~v 285 (368)
T cd08300 258 DYTFEC-IG----N----VKVMRAALEACHKGWGTSV 285 (368)
T ss_pred cEEEEC-CC----C----hHHHHHHHHhhccCCCeEE
Confidence 998852 11 1 12344445788886 8876
No 404
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=81.20 E-value=6 Score=35.41 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=50.2
Q ss_pred CCEEEEEcCCC--cHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce-------eeeecCCCceeeEE
Q 021852 24 DKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK-------IEEIELPVTKVDII 94 (306)
Q Consensus 24 ~~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~~D~i 94 (306)
..+|+-+|+|. |.++..+++.|. .|+.+..++ .+ .+..+++ .+.-..++ +....-....+|+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~~----~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-YE----AVRENGL--QVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-HH----HHHhCCe--EEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 35799999996 456777777775 777777653 11 1334443 11111111 11110012578988
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.-.-. .....++..+..++++++.++
T Consensus 77 ilavK~------~~~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 77 LVGLKT------TANALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred EEEecC------CChHhHHHHHhhhcCCCCEEE
Confidence 864211 233556667777888888776
No 405
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.11 E-value=3.4 Score=37.10 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=52.7
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce---eeeec--CCCce
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK---IEEIE--LPVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~--~~~~~ 90 (306)
....++.+||..|+|. |..+..+|+ .|...|++++.+ +..+.+++ .+.. .++... ...+. .+...
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCCCC
Confidence 4466888999998654 555555566 566559999876 55554432 3331 222211 11111 23345
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++... +. ...+....+.|+++|.++
T Consensus 228 ~d~vld~~------g~---~~~~~~~~~~l~~~G~~v 255 (343)
T cd08236 228 ADLVIEAA------GS---PATIEQALALARPGGKVV 255 (343)
T ss_pred CCEEEECC------CC---HHHHHHHHHHhhcCCEEE
Confidence 99998531 11 123445567889999986
No 406
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.71 E-value=3.2 Score=32.17 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=42.8
Q ss_pred CCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..++++||-+|+|- | .....++..|+++|+.+.-+ +-++...+.+. + ..++++. +.++.--...+|+|++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--~--~~~~~~~--~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--G--VNIEAIP--LEDLEEALQEADIVINA 82 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--G--CSEEEEE--GGGHCHHHHTESEEEE-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--c--cccceee--HHHHHHHHhhCCeEEEe
Confidence 45789999999985 3 23444455789899999977 44333333331 1 2355553 33332112579999985
Q ss_pred c
Q 021852 98 W 98 (306)
Q Consensus 98 ~ 98 (306)
.
T Consensus 83 T 83 (135)
T PF01488_consen 83 T 83 (135)
T ss_dssp S
T ss_pred c
Confidence 3
No 407
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=80.52 E-value=1.4 Score=41.42 Aligned_cols=104 Identities=17% Similarity=0.066 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-------CCCceeeE
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-------LPVTKVDI 93 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~~D~ 93 (306)
.+..+|-+|-|.|.+..++.. .+..+++|+|++ +|++.|++++..-.- .+..+.-.|.-+.. -.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 346788899999999887765 566799999999 899999887632211 11222222221110 13468999
Q ss_pred EEEccc--c-cccCCc---chHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWM--G-YFLLFE---NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~--~-~~~~~~---~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+.= + +.+.-. -.-+.++......|.|.|.++
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~ 413 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFI 413 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEE
Confidence 998531 1 111100 022456777788999999986
No 408
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=80.22 E-value=5.5 Score=36.34 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=53.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce---eeeec-CCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK---IEEIE-LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~-~~~~~~ 91 (306)
..+.++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +-.+.+++ .|...-+.....+ .+.+. +....+
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCC
Confidence 4567899999998764 555555566 677789999977 65555543 3432111111100 01010 112468
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
|+|+-.. + . ...+....+.++++ |.++
T Consensus 256 d~vid~~-g----~----~~~~~~~~~~l~~~~G~~v 283 (365)
T cd08277 256 DYSFECT-G----N----ADLMNEALESTKLGWGVSV 283 (365)
T ss_pred CEEEECC-C----C----hHHHHHHHHhcccCCCEEE
Confidence 9988421 1 1 12344455678775 8876
No 409
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.80 E-value=9.1 Score=29.72 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=41.8
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--------------------HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 26 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--------------------QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 26 ~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
+|+-+|||. | .++..+++.|.++++.+|.+ .-++.+++.+++..-.-+++.+.....+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 478899984 4 35667777898899988743 1134445555544422245555444433
Q ss_pred ec--CCCceeeEEEEc
Q 021852 84 IE--LPVTKVDIIISE 97 (306)
Q Consensus 84 ~~--~~~~~~D~iv~~ 97 (306)
.. ..-.++|+|+..
T Consensus 81 ~~~~~~~~~~diVi~~ 96 (143)
T cd01483 81 DNLDDFLDGVDLVIDA 96 (143)
T ss_pred hhHHHHhcCCCEEEEC
Confidence 21 012579999974
No 410
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=79.78 E-value=6.9 Score=35.83 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHcCCCCeEEEEEc
Q 021852 22 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--Q------------------MANMAKQIVEANGFSNVITVLKG 79 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~------------------~~~~a~~~~~~~~~~~~v~~~~~ 79 (306)
..+.+||-+|||. | ..+..++..|.++++.+|.+ + -++.+++++++.+-.-+++.+..
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 3568999999995 3 45677788899999988854 1 23445566655443334555554
Q ss_pred eeeee---cCCCceeeEEEEc
Q 021852 80 KIEEI---ELPVTKVDIIISE 97 (306)
Q Consensus 80 d~~~~---~~~~~~~D~iv~~ 97 (306)
.+..- .+ -..+|+|+..
T Consensus 106 ~i~~~~~~~~-~~~~DvVvd~ 125 (355)
T PRK05597 106 RLTWSNALDE-LRDADVILDG 125 (355)
T ss_pred ecCHHHHHHH-HhCCCEEEEC
Confidence 44321 11 1569999974
No 411
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.41 E-value=9.9 Score=29.90 Aligned_cols=72 Identities=32% Similarity=0.334 Sum_probs=48.5
Q ss_pred CEEEEEcCCCcH---HHHHHHHcCCCEEEEEech---HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CCC
Q 021852 25 KVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS---QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 88 (306)
Q Consensus 25 ~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 88 (306)
++||-.|+++|+ ++..+++.|+.+|+.+..+ +.+....+.++..+ .++.++..|+.+.. ...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 368888888763 3455556678788888854 45555555555555 57999999976543 113
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
.++|+++.+.
T Consensus 79 ~~ld~li~~a 88 (167)
T PF00106_consen 79 GPLDILINNA 88 (167)
T ss_dssp SSESEEEEEC
T ss_pred cccccccccc
Confidence 5799999864
No 412
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.28 E-value=7.1 Score=36.09 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=28.3
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHH
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMA 58 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~ 58 (306)
...+.++++||-|.+|.....-. ...+.++|+|||.| ...
T Consensus 30 aL~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQN 70 (380)
T ss_pred HhCCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHH
Confidence 45678999999996655444333 44467799999988 443
No 413
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.21 E-value=5.5 Score=36.83 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=46.0
Q ss_pred CEEEEEcCCC-cHH-HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEEc
Q 021852 25 KVVLDVGAGT-GIL-SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 97 (306)
Q Consensus 25 ~~VLDlG~G~-G~l-~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~~ 97 (306)
++||-||||. |.. +..+|+.+..+|+..|.+ +.++.+..... .+++.+..|+.+.+ +- ..+|+|++-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li-~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI-KDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH-hcCCEEEEe
Confidence 4799999975 432 445566676799999988 66665544321 26888888887763 11 345999986
Q ss_pred cc
Q 021852 98 WM 99 (306)
Q Consensus 98 ~~ 99 (306)
..
T Consensus 76 ~p 77 (389)
T COG1748 76 AP 77 (389)
T ss_pred CC
Confidence 43
No 414
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.09 E-value=19 Score=32.22 Aligned_cols=96 Identities=19% Similarity=0.112 Sum_probs=54.3
Q ss_pred cccCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeee-ec-CCCce
Q 021852 18 NKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEE-IE-LPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~~-~~~~~ 90 (306)
...+.+|.+||-.|++ .|.++..+|+ .|+ +|+++..+ +..+.+++. .|....+..-.. +..+ +. .....
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence 3457789999999872 3666666676 566 78888866 555555432 243211111111 1111 10 11256
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+-. . + . ..+....+.|+++|.++
T Consensus 222 vd~v~d~-~-----g--~--~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 222 IDIYFDN-V-----G--G--KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred cEEEEEC-C-----C--H--HHHHHHHHHhccCcEEE
Confidence 9998842 1 1 1 23445568899999987
No 415
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=79.08 E-value=10 Score=33.28 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 26 VVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 26 ~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
+|.-||+|. |.++..+++.|. +|+++|.+ +.++.+.+ .+. +.....+.+ . ....|+|+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~~-~---~~~aDlVilav---- 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL---VDEASTDLS-L---LKDCDLVILAL---- 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC---cccccCCHh-H---hcCCCEEEEcC----
Confidence 467788886 456666666765 89999987 55555533 232 111111111 1 24689988743
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.......++..+...++++.++.
T Consensus 66 --p~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 66 --PIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred --CHHHHHHHHHHHHHhCCCCcEEE
Confidence 22344556666767777765543
No 416
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=78.76 E-value=19 Score=32.72 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=52.8
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ec--CCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IE--LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~--~~~~ 89 (306)
..+.++.+||-.|+|. |..+..+++ .|+.+|++++.+ +..+.+++ .+.. .++..+-.+ +. .+..
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHcCCC
Confidence 4467788999997753 555555566 576569998876 55444432 2331 222211111 10 2235
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++... .. ...+....+.|+++|+++
T Consensus 251 ~vd~vld~~-----~~----~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 251 GADYAFEAV-----GR----AATIRQALAMTRKGGTAV 279 (363)
T ss_pred CCCEEEEcC-----CC----hHHHHHHHHHhhcCCeEE
Confidence 699888532 11 123455567889999886
No 417
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.34 E-value=11 Score=33.25 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=52.6
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-------cC-CC--------CeEEEEEceeeeec
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-------NG-FS--------NVITVLKGKIEEIE 85 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~~~ 85 (306)
++|.-||+|. +.++..+++.|. +|+.+|.+ +.++.+.+.+.. .+ +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899986 345566666766 89999988 776666543221 11 10 112222 122211
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-...|+|+.... ........++..+.+.++|+.++.
T Consensus 79 --~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~ 114 (288)
T PRK09260 79 --VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIA 114 (288)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 246899986432 111234456666777888887664
No 418
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.21 E-value=20 Score=26.99 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=42.4
Q ss_pred CEEEEEcCCCc-HHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEE
Q 021852 25 KVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIIS 96 (306)
Q Consensus 25 ~~VLDlG~G~G-~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~ 96 (306)
.+|.++|-|.= ..+..+++.|. .|+++|+++- ++. ..+.++..|+++-.+. -+..|+|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP-----EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc-----ccceEEEccCCCccHHHhhCccceee
Confidence 38999999873 44677778885 8999999832 111 2378888898775422 256899987
No 419
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.20 E-value=15 Score=32.46 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=45.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
..+++||-.|+..|+ ++..+++.|+ +|+.+..+ +..+.+.+.+....-..++.++.+|+.+.. . .
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 467899988876543 2333445676 78887765 444444333332211235788888887653 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 93 ~~~iD~li~nA 103 (306)
T PRK06197 93 YPRIDLLINNA 103 (306)
T ss_pred CCCCCEEEECC
Confidence 24689999864
No 420
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=78.19 E-value=12 Score=34.02 Aligned_cols=92 Identities=22% Similarity=0.159 Sum_probs=48.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.+ +....+. +..|. +. .+...+...+.-....+|+++-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~---~~~Ga-~~-~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEAL---EHLGA-DD-YLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH---HhcCC-cE-EecCCChHHHHHhcCCCcEEEEC
Confidence 35788999888764 566666666 565 68878765 4333332 22343 21 11111111111001358888742
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. + . ...+....+.|+++|+++
T Consensus 252 ~-g----~----~~~~~~~~~~l~~~G~iv 272 (357)
T PLN02514 252 V-P----V----FHPLEPYLSLLKLDGKLI 272 (357)
T ss_pred C-C----c----hHHHHHHHHHhccCCEEE
Confidence 1 1 1 123444557889999987
No 421
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=78.11 E-value=6.5 Score=35.17 Aligned_cols=92 Identities=24% Similarity=0.257 Sum_probs=51.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee---eeec--CCCcee
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI---EEIE--LPVTKV 91 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~--~~~~~~ 91 (306)
...++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +..+.++ ..+. + .++..+- +.+. .+...+
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~-~--~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE----RLGA-D--HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCC-c--EEEcCCccHHHHHHHHhCCCCC
Confidence 356788999999664 444444555 464588888876 5544443 3343 1 1222111 1111 223469
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++... .. ...+....+.|+++|.++
T Consensus 237 dvvld~~-----g~----~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 237 DAVIDFV-----GS----DETLALAAKLLAKGGRYV 263 (340)
T ss_pred CEEEEcC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 9998532 11 123445567889999987
No 422
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=78.11 E-value=5.2 Score=31.52 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=29.0
Q ss_pred EEcCCCc--HHHHHHH--Hc-CCCEEEEEech-HHHHHHHHH--HHHcCCCCeEEEEEce
Q 021852 29 DVGAGTG--ILSLFCA--KA-GAAHVYAVECS-QMANMAKQI--VEANGFSNVITVLKGK 80 (306)
Q Consensus 29 DlG~G~G--~l~~~~a--~~-g~~~v~~iD~s-~~~~~a~~~--~~~~~~~~~v~~~~~d 80 (306)
|||++.| ....... .. ...+|+++|.+ ...+..+++ +..+...+.+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 4444332 33 35589999998 788888887 5555443335555433
No 423
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.08 E-value=12 Score=31.84 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++.+|+.+.. + .
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999987763 3444455676 78888876 55555545554443 35778888876542 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 14789999864
No 424
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=78.03 E-value=13 Score=33.27 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=51.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
.+.++.+||-.|+|. |..+..+|+ .|+ +|++++.+ +-.+.+++ .|...-+.....+..........+|+++.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~d~vi~ 234 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQELGGAKLILA 234 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhcCCCCEEEE
Confidence 567889999999654 555555666 566 78999876 55555533 34311111111111110011134788884
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. + . ...+....+.|+++|.++
T Consensus 235 ~~-g----~----~~~~~~~~~~l~~~G~~v 256 (333)
T cd08296 235 TA-P----N----AKAISALVGGLAPRGKLL 256 (333)
T ss_pred CC-C----c----hHHHHHHHHHcccCCEEE
Confidence 21 1 1 123444567889999887
No 425
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=77.90 E-value=9.5 Score=37.20 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=46.7
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHH----HHcCCCEEEEEech-HHHHHHHHHHHHc-----C--CCCeEEEEEceeeeec
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFC----AKAGAAHVYAVECS-QMANMAKQIVEAN-----G--FSNVITVLKGKIEEIE 85 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~----a~~g~~~v~~iD~s-~~~~~a~~~~~~~-----~--~~~~v~~~~~d~~~~~ 85 (306)
......|++||-.|+. |.++..+ ++.|. +|+++..+ +-+....+.+... + ...++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 4455678899988874 4444444 34565 88888866 4443333322221 1 1135889999987643
Q ss_pred -C--CCceeeEEEEcc
Q 021852 86 -L--PVTKVDIIISEW 98 (306)
Q Consensus 86 -~--~~~~~D~iv~~~ 98 (306)
+ .-+.+|+||+..
T Consensus 152 sI~~aLggiDiVVn~A 167 (576)
T PLN03209 152 QIGPALGNASVVICCI 167 (576)
T ss_pred HHHHHhcCCCEEEEcc
Confidence 1 124689998863
No 426
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.80 E-value=26 Score=30.94 Aligned_cols=93 Identities=23% Similarity=0.261 Sum_probs=54.9
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc-------C-CC--------CeEEEEEceeeeec
Q 021852 25 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 85 (306)
Q Consensus 25 ~~VLDlG~G~G--~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~~~ 85 (306)
.+|.-||+|+- .++..+++.|. .|+..|.+ +.++.+.+.+..+ + ++ .++++. .+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH--
Confidence 46888999872 44556666665 89999988 6666654433221 2 11 123332 23322
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-..+|+|+.... ........++..+...++|+.+++
T Consensus 81 --~~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 --LADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred --hcCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 146898886431 122344566777878889988776
No 427
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.53 E-value=14 Score=31.92 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C----CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L----PV 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~ 88 (306)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.+.... ..++.++.+|+.+.. + ..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 357899999988763 3455566777 79999976 54444444443321 235788888886643 0 12
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|+++.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4689988764
No 428
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=77.43 E-value=10 Score=33.37 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=41.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN 68 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~ 68 (306)
...++.+|||--+|+|..+..+.+.|- +++++|.+ +.++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 467899999999999999988888754 89999998 8888888887654
No 429
>PRK06914 short chain dehydrogenase; Provisional
Probab=77.42 E-value=13 Score=32.13 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=44.6
Q ss_pred CCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC---------CCce
Q 021852 24 DKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL---------PVTK 90 (306)
Q Consensus 24 ~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 90 (306)
++++|-.|++.|.- +..+++.|+ +|++++.+ +-++...+.....+...++.++.+|+.+... ..++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 56789888765432 333445666 78888865 4444443434433434468888888866431 1146
Q ss_pred eeEEEEcc
Q 021852 91 VDIIISEW 98 (306)
Q Consensus 91 ~D~iv~~~ 98 (306)
+|+|+...
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 79988864
No 430
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.34 E-value=9.2 Score=31.08 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=42.2
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--H-----------------HHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 26 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--Q-----------------MANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 26 ~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~-----------------~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
+|+-+|||. | ..+..+++.|..+++.+|.+ + -++.+++++++.+-.-+++.+...+..-
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 478899985 4 45677788899899998854 1 1233444444333223455555444331
Q ss_pred cCC--CceeeEEEEc
Q 021852 85 ELP--VTKVDIIISE 97 (306)
Q Consensus 85 ~~~--~~~~D~iv~~ 97 (306)
..+ -..+|+|+..
T Consensus 81 ~~~~~l~~~DlVi~~ 95 (174)
T cd01487 81 NLEGLFGDCDIVVEA 95 (174)
T ss_pred hHHHHhcCCCEEEEC
Confidence 111 1469999964
No 431
>PRK08223 hypothetical protein; Validated
Probab=77.30 E-value=8.8 Score=33.95 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHcCCCCeEEEEEc
Q 021852 22 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--QM------------------ANMAKQIVEANGFSNVITVLKG 79 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~ 79 (306)
....+||-+|||- | ..+..+|.+|..+++.+|.+ +. ++.|++.+++.+-.-+|+.+..
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 3567999999995 4 55778888999899888754 21 2345555554443334555555
Q ss_pred eeeeecCC--CceeeEEEE
Q 021852 80 KIEEIELP--VTKVDIIIS 96 (306)
Q Consensus 80 d~~~~~~~--~~~~D~iv~ 96 (306)
.+.+-... -..+|+|+.
T Consensus 105 ~l~~~n~~~ll~~~DlVvD 123 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVD 123 (287)
T ss_pred ccCccCHHHHHhCCCEEEE
Confidence 44331110 146999984
No 432
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=77.24 E-value=16 Score=32.62 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=50.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c--CCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E--LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~ 89 (306)
....++.+||-.|+|. |..+..+|+ .|..+|++++.+ +-...+++ .|. ..+..+-.++ . .+..
T Consensus 163 ~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~~ 234 (344)
T cd08284 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEGR 234 (344)
T ss_pred cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCCC
Confidence 3456788999887653 344445555 565589999765 44444332 232 1122211111 0 2335
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++... .. ...+....+.++++|.++
T Consensus 235 ~~dvvid~~-----~~----~~~~~~~~~~l~~~g~~v 263 (344)
T cd08284 235 GADVVLEAV-----GG----AAALDLAFDLVRPGGVIS 263 (344)
T ss_pred CCCEEEECC-----CC----HHHHHHHHHhcccCCEEE
Confidence 699988531 11 123445567889999887
No 433
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.79 E-value=28 Score=30.51 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=55.2
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHH-------HHHcCC-C--------CeEEEEEceeeeecC
Q 021852 26 VVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQI-------VEANGF-S--------NVITVLKGKIEEIEL 86 (306)
Q Consensus 26 ~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~-------~~~~~~-~--------~~v~~~~~d~~~~~~ 86 (306)
+|--||+|. +.++..+++.|. +|+.+|.+ +.++.+++. +.+.+. . .++++. .+...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 578889986 456666777776 89999988 666554432 222331 1 123222 22221
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
...+|+|+-... ........++.++.+.++|+..+...
T Consensus 80 -~~~aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il~s~ 117 (282)
T PRK05808 80 -LKDADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAILATN 117 (282)
T ss_pred -hccCCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 246898886421 11123357888888889998877533
No 434
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=76.61 E-value=18 Score=33.26 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HH-HHHHHHHHHHcCCCCeEEEEE-ceeeeec-CCCceeeEEE
Q 021852 22 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QM-ANMAKQIVEANGFSNVITVLK-GKIEEIE-LPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~~~-~~~~~~D~iv 95 (306)
.++.+||-.|+|. |.++..+|+ .|+ +|++++.+ +. .+.+ +..|.. .++. .+...+. .. ..+|+++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a----~~lGa~---~~i~~~~~~~v~~~~-~~~D~vi 247 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAI----DRLGAD---SFLVTTDSQKMKEAV-GTMDFII 247 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHH----HhCCCc---EEEcCcCHHHHHHhh-CCCcEEE
Confidence 4788999999875 666666677 566 68888865 42 3333 233442 1221 1111111 11 2488888
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-- .+ . +..+....+.++++|.++
T Consensus 248 d~-~G----~----~~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 248 DT-VS----A----EHALLPLFSLLKVSGKLV 270 (375)
T ss_pred EC-CC----c----HHHHHHHHHhhcCCCEEE
Confidence 42 11 1 123444457889999987
No 435
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=76.60 E-value=24 Score=30.95 Aligned_cols=77 Identities=25% Similarity=0.354 Sum_probs=54.7
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC-CCeEEEEEceeeeec---------C
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF-SNVITVLKGKIEEIE---------L 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~---------~ 86 (306)
...++++|--|.++|+ .+..+++.|+ +|+.++.+ +.++..++.....+. ..++..+.+|+.+.+ .
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 4578999999999884 4677788888 88888876 666665555554444 356888888886442 0
Q ss_pred -C-CceeeEEEEcc
Q 021852 87 -P-VTKVDIIISEW 98 (306)
Q Consensus 87 -~-~~~~D~iv~~~ 98 (306)
. .++.|+++.+.
T Consensus 84 ~~~~GkidiLvnna 97 (270)
T KOG0725|consen 84 EKFFGKIDILVNNA 97 (270)
T ss_pred HHhCCCCCEEEEcC
Confidence 1 37899999874
No 436
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.41 E-value=14 Score=32.97 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=49.1
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 25 KVVLDVGAGT-G-ILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 25 ~~VLDlG~G~-G-~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+|.-||+|. | .++..+++.|. .+|+++|.+ +.++.++ ..+... . ...+..+. ...+|+|+....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~~~--~-~~~~~~~~---~~~aDvViiavp- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGLGD--R-VTTSAAEA---VKGADLVILCVP- 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCCCc--e-ecCCHHHH---hcCCCEEEECCC-
Confidence 5788999886 2 34455555664 489999988 5555443 234311 1 11122111 145899987532
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
......++..+...+++++.++
T Consensus 76 -----~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 -----VGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEE
Confidence 1233455666666788887654
No 437
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.39 E-value=10 Score=33.70 Aligned_cols=71 Identities=25% Similarity=0.331 Sum_probs=44.2
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 26 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--QM------------------ANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 26 ~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
+||-+|||. | .++..++..|.++++.+|.+ +. ++.|++.+++.+-.-+++.+..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 488899984 3 45666777899899988843 11 23444555443332356667666654
Q ss_pred ec--CCCceeeEEEEc
Q 021852 84 IE--LPVTKVDIIISE 97 (306)
Q Consensus 84 ~~--~~~~~~D~iv~~ 97 (306)
.. + -.+||+|+..
T Consensus 81 ~~~~f-~~~fdvVi~a 95 (291)
T cd01488 81 KDEEF-YRQFNIIICG 95 (291)
T ss_pred hhHHH-hcCCCEEEEC
Confidence 32 1 1579999974
No 438
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=76.36 E-value=5.8 Score=36.93 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=33.9
Q ss_pred ccCCCCCEEEEEc-CCC-cHHHHHHHHc---CCCEEEEEech-HHHHHHHHH
Q 021852 19 KFLFKDKVVLDVG-AGT-GILSLFCAKA---GAAHVYAVECS-QMANMAKQI 64 (306)
Q Consensus 19 ~~~~~~~~VLDlG-~G~-G~l~~~~a~~---g~~~v~~iD~s-~~~~~a~~~ 64 (306)
..+.++.+||-+| +|. |.++..+|++ |+.+|+++|.+ +-++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3467788999997 453 7777777774 45689999987 777777664
No 439
>PRK08324 short chain dehydrogenase; Validated
Probab=76.34 E-value=22 Score=35.68 Aligned_cols=72 Identities=24% Similarity=0.235 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----C
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP-----V 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 88 (306)
++++||-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.+... .++.++.+|+.+.. +. .
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56899999875542 2333444676 89999987 5544444433322 35778888876542 11 2
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+.+|+||.+.
T Consensus 497 g~iDvvI~~A 506 (681)
T PRK08324 497 GGVDIVVSNA 506 (681)
T ss_pred CCCCEEEECC
Confidence 4689999864
No 440
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.28 E-value=17 Score=31.26 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C---------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L---------P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 87 (306)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+....-..++.++..|+.+.. . .
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 357899999987763 2444455676 79999876 545444444433221135777888876643 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 24689998864
No 441
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=76.10 E-value=21 Score=31.47 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=46.3
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCC-cH-HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGT-GI-LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~-G~-l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
-|..++.......++++|+-+|||- |. .+..+++.|+++|+.++.+ +-++...+.+.... . .+.+.. ..++.-
T Consensus 113 G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~-~-~~~~~~--~~~~~~ 188 (284)
T PRK12549 113 GFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF-P-AARATA--GSDLAA 188 (284)
T ss_pred HHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC-C-CeEEEe--ccchHh
Confidence 4556665433335678999999986 33 2334455788899999987 54444433333221 1 123322 111110
Q ss_pred CCceeeEEEEc
Q 021852 87 PVTKVDIIISE 97 (306)
Q Consensus 87 ~~~~~D~iv~~ 97 (306)
....+|+||..
T Consensus 189 ~~~~aDiVIna 199 (284)
T PRK12549 189 ALAAADGLVHA 199 (284)
T ss_pred hhCCCCEEEEC
Confidence 11458999885
No 442
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.02 E-value=15 Score=32.60 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=45.6
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-HHHHHHHHH---HHHcCCCCeEEEEEceee
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-QMANMAKQI---VEANGFSNVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~~~~~a~~~---~~~~~~~~~v~~~~~d~~ 82 (306)
-|..++.+.....+++++|-+|+| |.- +..+++.|+++|+.++.+ +..+.+++. +...+ ..+.+...++.
T Consensus 112 G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~ 188 (289)
T PRK12548 112 GFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLN 188 (289)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechh
Confidence 455666543333567899999997 432 223446788889999876 322333332 22221 12333334443
Q ss_pred eec-C--CCceeeEEEEcc
Q 021852 83 EIE-L--PVTKVDIIISEW 98 (306)
Q Consensus 83 ~~~-~--~~~~~D~iv~~~ 98 (306)
+.. + .-..+|+||...
T Consensus 189 ~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 189 DTEKLKAEIASSDILVNAT 207 (289)
T ss_pred hhhHHHhhhccCCEEEEeC
Confidence 221 1 113579999864
No 443
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.94 E-value=7.5 Score=35.86 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 55 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s 55 (306)
.+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999984 4 45667788899999999864
No 444
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.94 E-value=16 Score=31.04 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+++++|-.|+++|+- +..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++.+|+.+.. + .
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3578999999866532 334455666 79999976 54444444444433 46888888886542 0 0
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|+|+.+.
T Consensus 82 ~g~id~li~~a 92 (253)
T PRK06172 82 YGRLDYAFNNA 92 (253)
T ss_pred hCCCCEEEECC
Confidence 14679999864
No 445
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=75.78 E-value=9.9 Score=29.65 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=49.9
Q ss_pred EEEEcCCC-c-HHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce-------eeeec---CCCceeeEE
Q 021852 27 VLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK-------IEEIE---LPVTKVDII 94 (306)
Q Consensus 27 VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~---~~~~~~D~i 94 (306)
|+-+|+|. | .++-.+++.|. .|+.+..++.++. ++++++ ++...+ ..... ....++|+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~----~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEA----IKEQGL----TITGPDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHH----HHHHCE----EEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHh----hhheeE----EEEecccceecccccccCcchhccCCCcEE
Confidence 56678886 3 34555556555 8999998752222 333342 222222 01011 123689999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.-. -....+.+++.+.+++.|+..++
T Consensus 72 iv~v------Ka~~~~~~l~~l~~~~~~~t~iv 98 (151)
T PF02558_consen 72 IVAV------KAYQLEQALQSLKPYLDPNTTIV 98 (151)
T ss_dssp EE-S------SGGGHHHHHHHHCTGEETTEEEE
T ss_pred EEEe------cccchHHHHHHHhhccCCCcEEE
Confidence 8742 22466778888999999997765
No 446
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=75.45 E-value=19 Score=32.17 Aligned_cols=95 Identities=22% Similarity=0.258 Sum_probs=53.7
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeec--CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~~D 92 (306)
..+.++.+||..|+|. |..+..+|+ .|. +|+++..+ +..+.+++ .+...-+.....+. +.+. .+...+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 4567888999998764 556666666 454 78888766 66555543 23211111111111 1111 2335699
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++... .. ...+....+.|+++|.++
T Consensus 230 ~vld~~-----g~----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 230 VVIDAT-----GN----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred EEEECC-----CC----HHHHHHHHHHHhcCCEEE
Confidence 998632 01 123455567889999886
No 447
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.42 E-value=17 Score=30.97 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+.. + .
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 468899999976643 2333445676 89999976 55554444454444 35788888876542 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|.++.+.
T Consensus 86 ~~~id~vi~~a 96 (256)
T PRK06124 86 HGRLDILVNNV 96 (256)
T ss_pred cCCCCEEEECC
Confidence 24678988764
No 448
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.38 E-value=19 Score=31.91 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C----
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L---- 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 86 (306)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+.. +
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467899999998863 3445566777 78888853 34444434444433 46788888886532 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 86 ~~g~iD~li~nA 97 (306)
T PRK07792 86 GLGGLDIVVNNA 97 (306)
T ss_pred HhCCCCEEEECC
Confidence 125789999864
No 449
>PRK07677 short chain dehydrogenase; Provisional
Probab=75.36 E-value=17 Score=31.01 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C---------CCc
Q 021852 24 DKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L---------PVT 89 (306)
Q Consensus 24 ~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 89 (306)
++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.++..+ .++.++.+|+.+.. . ..+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4678988887763 2344455677 89999976 54554444444333 46788888876532 0 114
Q ss_pred eeeEEEEcc
Q 021852 90 KVDIIISEW 98 (306)
Q Consensus 90 ~~D~iv~~~ 98 (306)
+.|++|.+.
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 689999864
No 450
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=75.30 E-value=3 Score=33.30 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=20.4
Q ss_pred eEEEecCCeeeccCCCEEEEEEEEeeC
Q 021852 249 QTVLYLEDVLTICEGEAISGSLTVAPN 275 (306)
Q Consensus 249 q~~~~l~~p~~v~~g~~l~~~~~~~~~ 275 (306)
|.+++|++|+.|.+||.|..+..++.+
T Consensus 78 Q~~y~l~~~v~i~~GD~l~~~C~Ydns 104 (156)
T PF03712_consen 78 QEFYPLKEPVTIPPGDTLRTECTYDNS 104 (156)
T ss_dssp -S-EEEEEEEEE-TT-EEEEEEEEE-T
T ss_pred ceeEECCCceEecCCCEEEEEEEEeCC
Confidence 667899999999999999999999875
No 451
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=75.10 E-value=11 Score=33.68 Aligned_cols=90 Identities=24% Similarity=0.237 Sum_probs=55.7
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEc--eeeee----cCCCceeeEEEE
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG--KIEEI----ELPVTKVDIIIS 96 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~----~~~~~~~D~iv~ 96 (306)
.+|+-+|+|. |.++..++++| ..|+.+-.++.++..+ ++|+ .+.-... ..... .-....+|+|+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~----~~GL--~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv 73 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALK----KKGL--RIEDEGGNFTTPVVAATDAEALGPADLVIV 73 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHH----hCCe--EEecCCCccccccccccChhhcCCCCEEEE
Confidence 3688999997 57788889988 5777776664444433 3354 1221111 00000 011357999997
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. -....+.++..+..+++++..++
T Consensus 74 ~v------Ka~q~~~al~~l~~~~~~~t~vl 98 (307)
T COG1893 74 TV------KAYQLEEALPSLAPLLGPNTVVL 98 (307)
T ss_pred Ee------ccccHHHHHHHhhhcCCCCcEEE
Confidence 42 22366788888889999998766
No 452
>PRK09242 tropinone reductase; Provisional
Probab=75.07 E-value=19 Score=30.72 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CCC
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 88 (306)
+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.+....-..++.++.+|+.+.. -..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57899999987653 3444455676 79999876 555554444443311246788888886532 012
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|+++...
T Consensus 87 g~id~li~~a 96 (257)
T PRK09242 87 DGLHILVNNA 96 (257)
T ss_pred CCCCEEEECC
Confidence 4689988764
No 453
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=74.91 E-value=15 Score=26.63 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=35.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.+|| +-||+|.-+-.+++ ..++.++++|+ .+++...+..++.-....+|+|+..+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~----------------k~~~~~~~~gi--~~~v~a~~~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN----------------KMNKAAEEYGV--PVKIAAGSYGAAGEKLDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHHHHH----------------HHHHHHHHCCC--cEEEEEecHHHHHhhcCCCCEEEECc
Confidence 3555 45888866555444 23566777888 37777777766542235689999753
No 454
>PRK05876 short chain dehydrogenase; Provisional
Probab=74.88 E-value=18 Score=31.46 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C---------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L---------P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 87 (306)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++..|+.+.. . .
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889999987753 2444455676 78888876 54444444444443 35778888886543 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 24689999864
No 455
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=74.74 E-value=11 Score=32.64 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--QM------------------ANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
..++|+-+|||. | ..+..++..|.++++.+|.+ +. ++.+++++++.+-.-+++.+...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 568999999984 3 44666777898899988743 21 23344445443322345555544
Q ss_pred eeeecCC--CceeeEEEEc
Q 021852 81 IEEIELP--VTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~~~--~~~~D~iv~~ 97 (306)
+.+...+ -..+|+|+..
T Consensus 111 i~~~~~~~~~~~~DiVi~~ 129 (245)
T PRK05690 111 LDDDELAALIAGHDLVLDC 129 (245)
T ss_pred CCHHHHHHHHhcCCEEEec
Confidence 4331111 1469999974
No 456
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=74.37 E-value=16 Score=31.02 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=44.6
Q ss_pred CCCCCEEEEEcCCCcHHHH----HHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------
Q 021852 21 LFKDKVVLDVGAGTGILSL----FCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---------- 85 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~----~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 85 (306)
..++++||-.|+.. .++. .+++.|+ +|++++.+ +.++...+.++..+. .++.++..|+....
T Consensus 9 ~~~~k~vlItG~~g-~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 9 LLKDRIILVTGAGD-GIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred ccCCCEEEEeCCCc-hHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHH
Confidence 45788999999654 4443 3444566 89999976 544444444444332 35667776664211
Q ss_pred C--CCceeeEEEEcc
Q 021852 86 L--PVTKVDIIISEW 98 (306)
Q Consensus 86 ~--~~~~~D~iv~~~ 98 (306)
+ ..+++|.|+.+.
T Consensus 86 ~~~~~~~id~vi~~A 100 (247)
T PRK08945 86 IEEQFGRLDGVLHNA 100 (247)
T ss_pred HHHHhCCCCEEEECC
Confidence 0 124689988753
No 457
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=74.11 E-value=16 Score=31.27 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=43.7
Q ss_pred EEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----CCcee
Q 021852 26 VVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PVTKV 91 (306)
Q Consensus 26 ~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~~ 91 (306)
++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ ++.++..|+.+.. + ..+++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 68888877653 3444555676 79999877 55555544444332 4778888876532 0 12578
Q ss_pred eEEEEcc
Q 021852 92 DIIISEW 98 (306)
Q Consensus 92 D~iv~~~ 98 (306)
|++|.+.
T Consensus 78 d~li~na 84 (259)
T PRK08340 78 DALVWNA 84 (259)
T ss_pred CEEEECC
Confidence 9999864
No 458
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.08 E-value=26 Score=31.51 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CC
Q 021852 22 FKDKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 87 (306)
..+.+++--|+-+|+- +..+|..|+ +|+-.--+ +..+.+++.+.+..-..++.+++.|+.++. -.
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 4567889989888743 556677885 77766655 667777676766444467889999987764 12
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
..+.|++|.+.
T Consensus 112 ~~~ldvLInNA 122 (314)
T KOG1208|consen 112 EGPLDVLINNA 122 (314)
T ss_pred CCCccEEEeCc
Confidence 46899998864
No 459
>PRK07340 ornithine cyclodeaminase; Validated
Probab=74.02 E-value=26 Score=31.27 Aligned_cols=86 Identities=17% Similarity=0.044 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCC-cHHHHHHH-H-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGT-GILSLFCA-K-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 81 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a-~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 81 (306)
.|+.+......+........+|+-+|||. |...+.+. . .+..+|+..+.+ +.++...+.++..++ .+...+.
T Consensus 107 ~RTaA~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~----~~~~~~~ 182 (304)
T PRK07340 107 RRTAAVSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGP----TAEPLDG 182 (304)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCC----eeEECCH
Confidence 35555554444444445678999999986 43333332 2 567789999987 555544444543332 2223334
Q ss_pred eeecCCCceeeEEEEcc
Q 021852 82 EEIELPVTKVDIIISEW 98 (306)
Q Consensus 82 ~~~~~~~~~~D~iv~~~ 98 (306)
++.. ..+|+|++-.
T Consensus 183 ~~av---~~aDiVitaT 196 (304)
T PRK07340 183 EAIP---EAVDLVVTAT 196 (304)
T ss_pred HHHh---hcCCEEEEcc
Confidence 3332 5799999854
No 460
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.94 E-value=18 Score=36.52 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=61.0
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc-------C-CC--------CeEEEEEceeeeec
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 85 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~~~ 85 (306)
.+|.-||+|+ ..++..+|.+|. .|+.+|.+ +.++.+.+.++.. + ++ .++++. .+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 5799999998 366777778876 99999988 7776665543221 1 11 133332 12221
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
-..+|+|+=.. .........++..+.++++|+.++.-+.
T Consensus 390 --~~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 390 --FERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred --hcCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 24689888532 2233456688888989999998776333
No 461
>PRK06128 oxidoreductase; Provisional
Probab=73.92 E-value=49 Score=29.12 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-H--HHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-Q--MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 86 (306)
.+++||-.|++.|+ ++..+++.|+ +|+.+..+ + ..+...+.++..+ .++.++.+|+.+.. +
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 46799999976653 2344455676 66665543 2 2233333344333 35778888886642 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 131 ~~g~iD~lV~nA 142 (300)
T PRK06128 131 ELGGLDILVNIA 142 (300)
T ss_pred HhCCCCEEEECC
Confidence 124689999875
No 462
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=73.89 E-value=21 Score=30.65 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--QM------------------ANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
.+.+|+-+|||. | ..+..+++.|.++++.+|.+ +. ++.+++.+++.+-.-+++.+...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~ 102 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK 102 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence 457899999985 4 45677788898899988754 21 23444555544432345555444
Q ss_pred eeeecCC--CceeeEEEEc
Q 021852 81 IEEIELP--VTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~~~--~~~~D~iv~~ 97 (306)
+.+.... -..+|+|+..
T Consensus 103 i~~~~~~~~~~~~DlVvd~ 121 (240)
T TIGR02355 103 LDDAELAALIAEHDIVVDC 121 (240)
T ss_pred CCHHHHHHHhhcCCEEEEc
Confidence 4321111 1469999964
No 463
>PRK09291 short chain dehydrogenase; Provisional
Probab=73.88 E-value=19 Score=30.56 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=42.7
Q ss_pred CCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEE
Q 021852 24 DKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 95 (306)
Q Consensus 24 ~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv 95 (306)
+++||-.|++.|+- +..+++.|+ +|+++..+ +.....++.....+. ++.++.+|+.+.. .-..++|+++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 35788888765432 233344565 78888865 444444444443332 4788888886542 1124789999
Q ss_pred Ecc
Q 021852 96 SEW 98 (306)
Q Consensus 96 ~~~ 98 (306)
.+.
T Consensus 79 ~~a 81 (257)
T PRK09291 79 NNA 81 (257)
T ss_pred ECC
Confidence 863
No 464
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.88 E-value=24 Score=31.36 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=51.5
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-cCC----------CCeEEEEEceeeeecCCCce
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-NGF----------SNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~-~~~----------~~~v~~~~~d~~~~~~~~~~ 90 (306)
++|.-||+|. +.++..+++.|. +|+.+|.+ +.++.+++.+.. .+. ..++++. .+..+. ...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA---VSG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH---hcc
Confidence 4688899996 345556666665 89999987 666666543211 110 0112221 122111 145
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|+|+.... ........++..+..+++++.+++
T Consensus 80 aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 80 ADLVIEAVP----EKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred CCEEEEecc----CcHHHHHHHHHHHHHhCCCCcEEE
Confidence 799886431 111235567777777777766554
No 465
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.84 E-value=14 Score=31.51 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--Q------------------MANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~------------------~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
...+|+-+|||. | ..+..+++.|..+++.+|.+ + -++.+++++.+.+-.-+++.+...
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 457899999985 4 44667788899999998843 1 123334444443322345555544
Q ss_pred eee--ec-CCCceeeEEEEc
Q 021852 81 IEE--IE-LPVTKVDIIISE 97 (306)
Q Consensus 81 ~~~--~~-~~~~~~D~iv~~ 97 (306)
+.. .. +-...+|+|+..
T Consensus 90 i~~~~~~~l~~~~~D~Vvda 109 (231)
T cd00755 90 LTPDNSEDLLGGDPDFVVDA 109 (231)
T ss_pred cCHhHHHHHhcCCCCEEEEc
Confidence 431 11 112459999874
No 466
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.81 E-value=19 Score=31.85 Aligned_cols=93 Identities=20% Similarity=0.319 Sum_probs=55.7
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-------cCC-C--------CeEEEEEceeeeec
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-------NGF-S--------NVITVLKGKIEEIE 85 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~-------~~~-~--------~~v~~~~~d~~~~~ 85 (306)
.+|--||+|+ +.++..++..|. .|+..|.+ +.++.+++.+++ .|. . .++++ ..+...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH--
Confidence 3788999996 355666777776 89999988 777665554322 121 0 12222 123221
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcc-cCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L-~p~G~~i 127 (306)
-..+|+|+-.. .........++..+.+.+ +|+.++.
T Consensus 82 --~~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 82 --FADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred --hCCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 14689888643 223344556677777777 7777765
No 467
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=73.81 E-value=6.2 Score=38.36 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=30.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEechH
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ 56 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s~ 56 (306)
.-+.++..|||+||.+|.+...|++ .+ .+-|+|+|+-+
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 3456788999999999999999998 45 34799999753
No 468
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=73.29 E-value=6 Score=36.57 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=43.6
Q ss_pred cCCCCeEEEEEceeeeec--CCCceeeEEEE-cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 68 NGFSNVITVLKGKIEEIE--LPVTKVDIIIS-EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 68 ~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~-~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++ ++++++++++.+.. .+++++|.++. +.++. + ....+...+.++.+.++|||+++
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dw-m-~~~~~~~~~~~l~~~~~pgaRV~ 331 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDW-M-DPEQLNEEWQELARTARPGARVL 331 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhh-C-CHHHHHHHHHHHHHHhCCCCEEE
Confidence 345 78999999998864 45689998765 33322 3 34677888999999999999998
No 469
>PRK07411 hypothetical protein; Validated
Probab=73.22 E-value=11 Score=35.12 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--QM------------------ANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
...+||-+|||. | ..+..++..|.++++.+|.+ +. ++.|++.+++.+-.-+|+.+...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 467999999995 3 45777788999999988854 22 23455555544433356666655
Q ss_pred eeeecCC--CceeeEEEEc
Q 021852 81 IEEIELP--VTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~~~--~~~~D~iv~~ 97 (306)
+...... -..+|+|+.-
T Consensus 117 ~~~~~~~~~~~~~D~Vvd~ 135 (390)
T PRK07411 117 LSSENALDILAPYDVVVDG 135 (390)
T ss_pred cCHHhHHHHHhCCCEEEEC
Confidence 5432110 1469999974
No 470
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.16 E-value=15 Score=31.72 Aligned_cols=105 Identities=21% Similarity=0.186 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cC--CCEEEEEech-HHHH------HHHHH---HHHcCCCCeEEEEEceeeeec---
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECS-QMAN------MAKQI---VEANGFSNVITVLKGKIEEIE--- 85 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g--~~~v~~iD~s-~~~~------~a~~~---~~~~~~~~~v~~~~~d~~~~~--- 85 (306)
.+..+||.+|-|-=.++..++. .| +..+++...+ .-.+ .++++ +++.|.. -+...|+..+.
T Consensus 55 s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~---I~h~Vdv~sl~~~~ 131 (282)
T KOG4174|consen 55 SKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT---ILHGVDVTSLKFHA 131 (282)
T ss_pred cccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc---eEecccceeEEecc
Confidence 4557899988887677777776 34 4567777654 2211 12222 3455542 23333444433
Q ss_pred -CCCceeeEEEEcccccccC------------CcchHHHHHHHHhhccc-CCeEEEec
Q 021852 86 -LPVTKVDIIISEWMGYFLL------------FENMLNTVLYARDKWLV-DDGIVLPD 129 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~------------~~~~~~~~l~~~~~~L~-p~G~~ip~ 129 (306)
+..++||-||.+.+..+.. +......+++.+..+|+ .+|.++|.
T Consensus 132 ~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~it 189 (282)
T KOG4174|consen 132 DLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHIT 189 (282)
T ss_pred cccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3457899999985433321 22234567778888998 88998744
No 471
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=72.93 E-value=33 Score=30.43 Aligned_cols=92 Identities=21% Similarity=0.165 Sum_probs=52.1
Q ss_pred ccCCCCCEEEEEcCC-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i 94 (306)
....++.+||-.|+| .|..+..+++ .|. +|++++.+ +..+.+++ .+.. .++...-.... -..+.+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhccCCCCEE
Confidence 456778899999887 4666666666 455 78998877 66555533 2321 11111111100 012458988
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+... .. ........+.|+++|.++
T Consensus 230 i~~~-----~~----~~~~~~~~~~l~~~G~~i 253 (330)
T cd08245 230 LVTV-----VS----GAAAEAALGGLRRGGRIV 253 (330)
T ss_pred EECC-----Cc----HHHHHHHHHhcccCCEEE
Confidence 8531 11 123445567899999887
No 472
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=72.87 E-value=26 Score=31.55 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=51.0
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ec--CCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IE--LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~--~~~~ 89 (306)
..+.++.+||-.|+|. |..+..+|+ .|+..+++++.+ +-...++ ..+. + .++...-.+ +. .+..
T Consensus 170 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~-~--~v~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08256 170 ANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR----KFGA-D--VVLNPPEVDVVEKIKELTGGY 242 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH----HcCC-c--EEecCCCcCHHHHHHHHhCCC
Confidence 4566788888866643 444555555 677788999976 4444433 2343 2 122211111 11 1234
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++... + .. ..+....+.++++|.++
T Consensus 243 ~vdvvld~~-g----~~----~~~~~~~~~l~~~G~~v 271 (350)
T cd08256 243 GCDIYIEAT-G----HP----SAVEQGLNMIRKLGRFV 271 (350)
T ss_pred CCCEEEECC-C----Ch----HHHHHHHHHhhcCCEEE
Confidence 689988531 1 11 23444567889999886
No 473
>PRK07035 short chain dehydrogenase; Provisional
Probab=72.84 E-value=23 Score=30.04 Aligned_cols=74 Identities=26% Similarity=0.358 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.++++||-.|+++|+- +..+++.|+ +|+.++.+ +-++...+.+...+ .++.++..|+.+.. + .
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567899999887633 444555676 89999976 54444444444333 35677777775543 0 0
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|+++...
T Consensus 83 ~~~id~li~~a 93 (252)
T PRK07035 83 HGRLDILVNNA 93 (252)
T ss_pred cCCCCEEEECC
Confidence 13689998754
No 474
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=72.69 E-value=18 Score=30.97 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=44.1
Q ss_pred CCCCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+++++|-.|+++|+- +..+++.|+ +|+.++.+ +.++...+.. ..++.++.+|+.+.. + .
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 3578999999876532 334455666 79999876 5444333222 235778888876542 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 78 ~g~id~li~~a 88 (263)
T PRK06200 78 FGKLDCFVGNA 88 (263)
T ss_pred cCCCCEEEECC
Confidence 24689998864
No 475
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.28 E-value=30 Score=30.40 Aligned_cols=90 Identities=24% Similarity=0.231 Sum_probs=49.1
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC---CeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 26 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS---NVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 26 ~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
+|+-+|+|. | .++..+++.|. +|+.++.+ +.++..+ .+++. ...........+.. +...+|+|+...-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALN----ENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHH----HcCCcccCCceeecccCCCChh-HcCCCCEEEEecc
Confidence 588899987 3 44555666665 89999975 5444332 23431 11110000011111 1257899887431
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+.++..+...+.++..++
T Consensus 76 ------~~~~~~~~~~l~~~l~~~~~iv 97 (304)
T PRK06522 76 ------AYQLPAALPSLAPLLGPDTPVL 97 (304)
T ss_pred ------cccHHHHHHHHhhhcCCCCEEE
Confidence 1345667777777787776665
No 476
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=72.17 E-value=7.4 Score=29.81 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=40.3
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCc-HHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP- 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G-~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 87 (306)
.+.+.|.+. .+..+|+++|-|.= ..+..++++|. .|+++|+.+. .+. . .+.++..|+.+-.+.
T Consensus 3 ~~a~~ia~~---~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~----g~~~v~DDif~P~l~i 67 (127)
T PF03686_consen 3 DFAEYIARL---NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-E----GVNFVVDDIFNPNLEI 67 (127)
T ss_dssp HHHHHHHHH---S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHH
T ss_pred hHHHHHHHh---CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-c----CcceeeecccCCCHHH
Confidence 345555532 23449999999984 55677777885 9999998832 122 2 356888888764321
Q ss_pred CceeeEEEEc
Q 021852 88 VTKVDIIISE 97 (306)
Q Consensus 88 ~~~~D~iv~~ 97 (306)
-..+|+|.|-
T Consensus 68 Y~~a~lIYSi 77 (127)
T PF03686_consen 68 YEGADLIYSI 77 (127)
T ss_dssp HTTEEEEEEE
T ss_pred hcCCcEEEEe
Confidence 2479999983
No 477
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=72.14 E-value=49 Score=28.59 Aligned_cols=93 Identities=26% Similarity=0.245 Sum_probs=49.3
Q ss_pred ccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....++.+||-.|+ | .|..+..+++ .|. +|+.++.++..+.+ +..+...-+.....+... ......+|+++
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~-~~~~~~~d~v~ 213 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAANADFL----RSLGADEVIDYTKGDFER-AAAPGGVDAVL 213 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecchhHHHH----HHcCCCEEEeCCCCchhh-ccCCCCceEEE
Confidence 34678899999986 2 3555555566 455 67777654433333 333431111111111111 12335689888
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...- . . ......+.++++|.++
T Consensus 214 ~~~~-----~-~----~~~~~~~~l~~~g~~v 235 (309)
T cd05289 214 DTVG-----G-E----TLARSLALVKPGGRLV 235 (309)
T ss_pred ECCc-----h-H----HHHHHHHHHhcCcEEE
Confidence 5321 1 1 3444557889999886
No 478
>PRK07806 short chain dehydrogenase; Provisional
Probab=71.97 E-value=59 Score=27.35 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=42.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 87 (306)
.+++++|-.|+..|+ ++..+++.|. +|+++..+ ...+.....++..+ .++.++.+|+.+.. +.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 356789999976542 2333344565 78887753 33333333333333 35778888886643 00
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.+.+|+++.+.
T Consensus 81 ~~~~~d~vi~~a 92 (248)
T PRK07806 81 EFGGLDALVLNA 92 (248)
T ss_pred hCCCCcEEEECC
Confidence 13589888764
No 479
>PRK06194 hypothetical protein; Provisional
Probab=71.80 E-value=22 Score=30.91 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C----C-----C
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L----P-----V 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~----~-----~ 88 (306)
+++++|-.|++.|+ ++..+++.|+ +|+.+|.+ +.++...+.+...+ .++.++.+|+.+.. + . .
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789988866542 2334455676 79999976 54444434343333 35788888886642 1 1 1
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|+|+.+.
T Consensus 82 g~id~vi~~A 91 (287)
T PRK06194 82 GAVHLLFNNA 91 (287)
T ss_pred CCCCEEEECC
Confidence 3589999864
No 480
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=71.72 E-value=5.7 Score=32.34 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=46.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
...|++|.-+|+|. |.-....++ .|. +|++.|.+ ..... ....+ + ...+++++. ...|+|+..
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~----~~~~~----~--~~~~l~ell---~~aDiv~~~ 98 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEG----ADEFG----V--EYVSLDELL---AQADIVSLH 98 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHH----HHHTT----E--EESSHHHHH---HH-SEEEE-
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhh----ccccc----c--eeeehhhhc---chhhhhhhh
Confidence 34689999999886 433222333 566 99999987 43331 11111 2 222444442 568999885
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... -...+.+ =.+....+|+|.++|
T Consensus 99 ~plt-~~T~~li---~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 99 LPLT-PETRGLI---NAEFLAKMKPGAVLV 124 (178)
T ss_dssp SSSS-TTTTTSB---SHHHHHTSTTTEEEE
T ss_pred hccc-cccceee---eeeeeeccccceEEE
Confidence 4311 1111111 123346889998887
No 481
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=71.71 E-value=16 Score=37.04 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=60.8
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc--------CCC--------CeEEEEEceeeeec
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN--------GFS--------NVITVLKGKIEEIE 85 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~--------~~~--------~~v~~~~~d~~~~~ 85 (306)
.+|--||+|+ +.++..++..|. .|+.+|.+ +.++.+.++++++ .++ .++++. .+...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 5799999997 356667777776 89999988 7777765554322 111 123322 12221
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
-..+|+|+=.. .........++.++.++++|+.++.-+
T Consensus 412 --~~~aDlViEAv----~E~l~~K~~vf~~l~~~~~~~~ilasN 449 (737)
T TIGR02441 412 --FKNADMVIEAV----FEDLSLKHKVIKEVEAVVPPHCIIASN 449 (737)
T ss_pred --hccCCeehhhc----cccHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 24688888432 223345668888999999999887633
No 482
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=71.59 E-value=6.7 Score=37.02 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCC-cHH-HHHHHHcCCCEEE-----EEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 21 LFKDKVVLDVGAGT-GIL-SLFCAKAGAAHVY-----AVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l-~~~~a~~g~~~v~-----~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
..++++|+-||||+ |.. ++.+...|...++ ++|.+ ...+ ++...|+. + .+..+. ....|
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~----kA~~dGF~----v--~~~~Ea---~~~AD 99 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWR----KATENGFK----V--GTYEEL---IPQAD 99 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHH----HHHhcCCc----c--CCHHHH---HHhCC
Confidence 45789999999998 431 1111113443333 33332 2222 33444652 1 233333 25799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
+|+.-..+ + .-..+..++...||||..+..+.
T Consensus 100 vVviLlPD-----t-~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 100 LVINLTPD-----K-QHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred EEEEcCCh-----H-HHHHHHHHHHhhCCCCCEEEecC
Confidence 99985432 2 24445577889999998877443
No 483
>PRK08303 short chain dehydrogenase; Provisional
Probab=71.56 E-value=26 Score=31.16 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=45.1
Q ss_pred CCCCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-----------HHHHHHHHHHHHcCCCCeEEEEEceeeeec--
Q 021852 22 FKDKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-----------QMANMAKQIVEANGFSNVITVLKGKIEEIE-- 85 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-----------~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 85 (306)
.+++++|-.|+++|+= +..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++.+|+.+..
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQV 82 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHH
Confidence 4678999999887632 444455676 78887754 12233333344333 35677888876543
Q ss_pred ---C-----CCceeeEEEEcc
Q 021852 86 ---L-----PVTKVDIIISEW 98 (306)
Q Consensus 86 ---~-----~~~~~D~iv~~~ 98 (306)
. ..++.|++|.+.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 0 125789999875
No 484
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.54 E-value=26 Score=29.72 Aligned_cols=74 Identities=23% Similarity=0.347 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C---------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L---------P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 87 (306)
.++++||-.|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+ .++.++..|+.+.. + .
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 357889999986653 2444455676 89999976 54444444444333 35788888886532 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-+++|+|+...
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 14689999864
No 485
>PRK08328 hypothetical protein; Provisional
Probab=71.40 E-value=6.3 Score=33.69 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=34.6
Q ss_pred CCCChHHHHHHHHHHHhc----ccCCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEec
Q 021852 1 MLKDVVRTKSYQNVIYQN----KFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVEC 54 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~----~~~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~ 54 (306)
||.+... +.|.+.+.-. .....+.+|+-+|||. | ..+..+++.|.++++.+|.
T Consensus 1 ~l~~~~~-~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 1 MLSEREL-ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred CCCHHHH-HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7776552 4455544310 1123467899999995 4 4567778899999999984
No 486
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=71.17 E-value=11 Score=33.93 Aligned_cols=93 Identities=27% Similarity=0.266 Sum_probs=49.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee---eeecCCCceeeEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI---EEIELPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~D~i 94 (306)
..++.+||-.|+|. |.++..+++ .|..+|++++.+ +-.+.+++ .+...-+.....+. ..+ .+.+.+|++
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEE
Confidence 35788888877654 455555566 566578888655 43444332 34311111111111 111 233579999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.... . ........+.|+++|.++
T Consensus 236 ld~~g-----~----~~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 236 LEMSG-----N----PKAIEQGLKALTPGGRVS 259 (341)
T ss_pred EECCC-----C----HHHHHHHHHHhccCCEEE
Confidence 86321 1 123344457889999886
No 487
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.09 E-value=7.4 Score=35.40 Aligned_cols=61 Identities=26% Similarity=0.433 Sum_probs=39.1
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEE---Eech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYA---VECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~---iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+..+.+.|||.|.++.+++. .+...++- +|.. .-...-++....+ +..+.-+..|++++.+
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~--~~vi~R~riDI~dLkL 248 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKN--SLVIKRIRIDIEDLKL 248 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccC--cchhheeEeeHHhcCc
Confidence 36999999999999999988 45556666 7744 3222222222222 2346667778877653
No 488
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=71.08 E-value=12 Score=27.18 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=34.0
Q ss_pred EcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 30 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 30 lG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
+-||+|.-+-.+++ ..++.++++|++ +++...+..+..-....+|+|+..+
T Consensus 4 ~~Cg~G~sTS~~~~----------------ki~~~~~~~~~~--~~v~~~~~~~~~~~~~~~Diil~~P 54 (96)
T cd05564 4 LVCSAGMSTSILVK----------------KMKKAAEKRGID--AEIEAVPESELEEYIDDADVVLLGP 54 (96)
T ss_pred EEcCCCchHHHHHH----------------HHHHHHHHCCCc--eEEEEecHHHHHHhcCCCCEEEECh
Confidence 34777765544444 346777888883 7888877766642336799999854
No 489
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.02 E-value=12 Score=30.97 Aligned_cols=65 Identities=20% Similarity=0.077 Sum_probs=41.7
Q ss_pred ccCCCCCEEEEEcCC-CcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAG-TGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G-~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
.....++.||-+|.- +|.....+... +.+|+.+|+.+..+. -++++|+|..+ +.++.+.+|+||-
T Consensus 40 ~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~--------~lp~~v~Fr~~----~~~~~G~~DlivD 105 (254)
T COG4017 40 LEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRG--------FLPNNVKFRNL----LKFIRGEVDLIVD 105 (254)
T ss_pred hcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHh--------cCCCCccHhhh----cCCCCCceeEEEe
Confidence 345678899999986 46554433332 569999999843322 13355777654 2334588999995
No 490
>PRK07831 short chain dehydrogenase; Provisional
Probab=71.01 E-value=29 Score=29.71 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=46.7
Q ss_pred CCCCCEEEEEcC-CCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-cCCCCeEEEEEceeeeec-----C---
Q 021852 21 LFKDKVVLDVGA-GTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-NGFSNVITVLKGKIEEIE-----L--- 86 (306)
Q Consensus 21 ~~~~~~VLDlG~-G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~-----~--- 86 (306)
..+++++|-.|+ |+|+ ++..+++.|+ +|+.++.+ +-++.+.+.++. .+- .++.++.+|+.+.. +
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGL-GRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEEccCCCHHHHHHHHHHH
Confidence 445789999996 3442 2444455676 68888876 555555454443 221 35788888886542 0
Q ss_pred --CCceeeEEEEcc
Q 021852 87 --PVTKVDIIISEW 98 (306)
Q Consensus 87 --~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 92 ~~~~g~id~li~~a 105 (262)
T PRK07831 92 VERLGRLDVLVNNA 105 (262)
T ss_pred HHHcCCCCEEEECC
Confidence 114689988864
No 491
>PRK08862 short chain dehydrogenase; Provisional
Probab=70.75 E-value=23 Score=29.94 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----CC
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 88 (306)
+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++..+..|..+.. + .-
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999974 4556666777 78888876 55555544454443 24556666654432 0 01
Q ss_pred c-eeeEEEEcc
Q 021852 89 T-KVDIIISEW 98 (306)
Q Consensus 89 ~-~~D~iv~~~ 98 (306)
+ ++|+++.+.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 3 789999875
No 492
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=70.68 E-value=25 Score=31.37 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----CC
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 88 (306)
+++++|-.|+..|+ ++..+++.|+ +|+.++.+ +-++.+.+.+... ..++.++..|+.+.. . ..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 56789999876542 2334445665 89888866 4444433333222 235788888886643 1 11
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
.++|++|.+.
T Consensus 82 ~~iD~li~nA 91 (322)
T PRK07453 82 KPLDALVCNA 91 (322)
T ss_pred CCccEEEECC
Confidence 3689999874
No 493
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.59 E-value=48 Score=29.33 Aligned_cols=88 Identities=22% Similarity=0.189 Sum_probs=49.9
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
..+.++.+||-.|+|. |..+..+++ .|. +|++++.+ +..+.+++ .|.. .++..+ .. +.+.+|+++
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~----~g~~---~~~~~~--~~--~~~~vD~vi 230 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARE----LGAD---WAGDSD--DL--PPEPLDAAI 230 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHH----hCCc---EEeccC--cc--CCCcccEEE
Confidence 4567788888887764 344444555 454 88888876 54444432 3331 112111 11 235688877
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... . . ...+....+.|+++|.++
T Consensus 231 ~~~----~-~----~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 231 IFA----P-V----GALVPAALRAVKKGGRVV 253 (329)
T ss_pred EcC----C-c----HHHHHHHHHHhhcCCEEE
Confidence 421 0 1 124555678999999987
No 494
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=70.54 E-value=35 Score=30.56 Aligned_cols=94 Identities=23% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-e-c-CCCceeeEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-I-E-LPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~-~~~~~~D~i 94 (306)
..++.+||-.|+|. |..+..+|+ .|.+.|++++.+ .-.+.+++ .+...-+.....+..+ + . .+...+|++
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 45778888877642 444555555 566568888766 44444432 2431111111111111 1 0 233568999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+... . . ...+....+.|+++|.++
T Consensus 235 ld~~----g-~----~~~~~~~~~~l~~~g~~v 258 (340)
T TIGR00692 235 LEMS----G-A----PKALEQGLQAVTPGGRVS 258 (340)
T ss_pred EECC----C-C----HHHHHHHHHhhcCCCEEE
Confidence 8631 1 1 123445567889999886
No 495
>PRK14852 hypothetical protein; Provisional
Probab=70.51 E-value=13 Score=38.54 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=47.1
Q ss_pred CCCEEEEEcCC-Cc-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAG-TG-ILSLFCAKAGAAHVYAVECS--QM------------------ANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G-~G-~l~~~~a~~g~~~v~~iD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
...+|+-+||| .| ..+..++..|.++++.+|.+ +. ++.+++.+++-+-.-+|+.+...
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 46799999999 44 56788888998888887743 21 23455555544433356666554
Q ss_pred eeeecCC--CceeeEEEEc
Q 021852 81 IEEIELP--VTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~~~--~~~~D~iv~~ 97 (306)
+.+-... -..+|+||..
T Consensus 411 I~~en~~~fl~~~DiVVDa 429 (989)
T PRK14852 411 VAAETIDAFLKDVDLLVDG 429 (989)
T ss_pred CCHHHHHHHhhCCCEEEEC
Confidence 4321111 1579999964
No 496
>PRK06125 short chain dehydrogenase; Provisional
Probab=70.47 E-value=26 Score=29.93 Aligned_cols=74 Identities=22% Similarity=0.202 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-CCceee
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTKVD 92 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~~D 92 (306)
.++++|-.|+++|+ ++..+++.|+ +|++++.+ +.++.+.+.+.... ..++.++..|+.+.. + ..+++|
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 57899999976652 2334455677 89999976 55555444444322 235778888876532 0 125789
Q ss_pred EEEEcc
Q 021852 93 IIISEW 98 (306)
Q Consensus 93 ~iv~~~ 98 (306)
++|.+.
T Consensus 84 ~lv~~a 89 (259)
T PRK06125 84 ILVNNA 89 (259)
T ss_pred EEEECC
Confidence 998864
No 497
>PRK07478 short chain dehydrogenase; Provisional
Probab=70.41 E-value=26 Score=29.74 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----CC
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 88 (306)
+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++.+|+.+.. + ..
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 56789988887653 3445555677 79988876 54554444454443 35778888876543 0 12
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|++|.+.
T Consensus 82 ~~id~li~~a 91 (254)
T PRK07478 82 GGLDIAFNNA 91 (254)
T ss_pred CCCCEEEECC
Confidence 4789999864
No 498
>PRK05866 short chain dehydrogenase; Provisional
Probab=70.25 E-value=25 Score=30.93 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----CC
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 88 (306)
.++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.+...+ .++.++.+|+.+.. + ..
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999987653 2333445665 89999977 55554444444333 35778888876543 0 12
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+.+|+++.+.
T Consensus 116 g~id~li~~A 125 (293)
T PRK05866 116 GGVDILINNA 125 (293)
T ss_pred CCCCEEEECC
Confidence 4789999864
No 499
>PRK08589 short chain dehydrogenase; Validated
Probab=70.23 E-value=27 Score=30.21 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 88 (306)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++.++...+.++..+ .++.++.+|+.+.. + ..
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 357899999987763 2444455676 8998887633333333333333 35788888876542 0 12
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
++.|++|.+.
T Consensus 81 g~id~li~~A 90 (272)
T PRK08589 81 GRVDVLFNNA 90 (272)
T ss_pred CCcCEEEECC
Confidence 4689999874
No 500
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.18 E-value=8.7 Score=34.47 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=52.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee----eeec--CCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI----EEIE--LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~--~~~~ 89 (306)
....++.+||-.|+|. |.++..+|+ .|++.+++++.+ .-.+.++ ..|.. .++...- +.+. .+..
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~ga~---~v~~~~~~~~~~~i~~~~~~~ 236 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR----EFGAT---DIVAERGEEAVARVRELTGGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCc---eEecCCcccHHHHHHHhcCCC
Confidence 3456788888888764 555555666 677679999876 3333333 23431 2222111 1111 1334
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++... + . ...+....+.++++|.++
T Consensus 237 ~~d~il~~~-g----~----~~~~~~~~~~l~~~g~~v 265 (345)
T cd08287 237 GADAVLECV-G----T----QESMEQAIAIARPGGRVG 265 (345)
T ss_pred CCCEEEECC-C----C----HHHHHHHHHhhccCCEEE
Confidence 689988521 1 1 234555668889999886
Done!