Query 021853
Match_columns 306
No_of_seqs 211 out of 798
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4005 Transcription factor X 99.3 1.2E-11 2.7E-16 114.8 8.9 66 235-302 53-118 (292)
2 smart00338 BRLZ basic region l 99.2 4.5E-11 9.7E-16 89.7 7.6 52 250-301 2-53 (65)
3 KOG4343 bZIP transcription fac 99.2 4E-11 8.6E-16 121.3 9.4 58 245-302 273-330 (655)
4 KOG3584 cAMP response element 99.2 1.8E-11 4E-16 116.2 6.7 59 245-303 283-341 (348)
5 PF00170 bZIP_1: bZIP transcri 99.1 1.9E-10 4.2E-15 86.1 7.3 52 250-301 2-53 (64)
6 PF07716 bZIP_2: Basic region 99.1 7E-10 1.5E-14 80.9 8.1 51 250-301 2-52 (54)
7 KOG0709 CREB/ATF family transc 98.9 1.4E-09 3E-14 108.8 4.9 55 247-301 245-299 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.9 9.7E-07 2.1E-11 70.9 -2.9 48 249-296 26-73 (92)
9 KOG0837 Transcriptional activa 97.5 0.00026 5.7E-09 67.1 7.7 66 236-301 188-254 (279)
10 KOG3119 Basic region leucine z 97.2 0.0018 3.8E-08 61.5 8.4 55 247-301 188-242 (269)
11 KOG4571 Activating transcripti 96.8 0.0038 8.3E-08 60.1 7.7 48 250-297 223-271 (294)
12 KOG3863 bZIP transcription fac 95.9 0.0057 1.2E-07 64.0 3.2 49 255-303 492-541 (604)
13 KOG4196 bZIP transcription fac 95.8 0.046 1E-06 47.3 7.6 51 248-298 48-98 (135)
14 KOG1414 Transcriptional activa 93.8 0.0092 2E-07 59.4 -1.9 64 238-301 270-334 (395)
15 KOG1414 Transcriptional activa 90.3 0.015 3.2E-07 58.0 -5.2 49 246-294 147-199 (395)
16 KOG3119 Basic region leucine z 87.5 2.6 5.6E-05 40.2 7.9 63 243-305 187-253 (269)
17 PF01166 TSC22: TSC-22/dip/bun 79.4 3.3 7.2E-05 31.5 4.0 23 274-296 21-43 (59)
18 PRK00888 ftsB cell division pr 76.7 7 0.00015 32.3 5.6 32 270-301 30-61 (105)
19 PF04977 DivIC: Septum formati 73.6 11 0.00023 28.2 5.5 30 271-300 21-50 (80)
20 PF01166 TSC22: TSC-22/dip/bun 72.5 8 0.00017 29.4 4.4 30 274-303 14-43 (59)
21 PHA03155 hypothetical protein; 71.2 5.4 0.00012 34.0 3.6 24 274-297 8-31 (115)
22 PHA03162 hypothetical protein; 71.2 2.8 6E-05 36.6 2.0 27 271-297 10-36 (135)
23 PF06156 DUF972: Protein of un 69.9 8 0.00017 32.3 4.4 28 275-302 23-50 (107)
24 PF07558 Shugoshin_N: Shugoshi 69.4 4.9 0.00011 28.7 2.6 42 255-297 3-44 (46)
25 PF03980 Nnf1: Nnf1 ; InterPr 68.6 10 0.00022 30.9 4.7 31 271-301 77-107 (109)
26 KOG4797 Transcriptional regula 66.2 9.5 0.00021 32.5 4.1 24 272-295 72-95 (123)
27 PF12808 Mto2_bdg: Micro-tubul 65.9 18 0.00038 26.9 5.0 26 277-302 25-50 (52)
28 PF01486 K-box: K-box region; 65.8 30 0.00065 27.8 6.9 47 252-298 48-99 (100)
29 PRK13169 DNA replication intia 65.0 12 0.00025 31.7 4.4 25 274-298 29-53 (110)
30 KOG4797 Transcriptional regula 64.0 13 0.00029 31.7 4.6 30 274-303 67-96 (123)
31 smart00340 HALZ homeobox assoc 59.9 22 0.00048 25.5 4.4 28 277-304 8-35 (44)
32 PRK10884 SH3 domain-containing 59.5 51 0.0011 30.5 8.0 23 276-298 127-149 (206)
33 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.3 69 0.0015 27.1 7.9 49 252-300 83-131 (132)
34 TIGR02209 ftsL_broad cell divi 57.0 45 0.00097 25.5 6.2 31 271-301 28-58 (85)
35 PF08172 CASP_C: CASP C termin 56.9 22 0.00047 33.8 5.2 48 252-300 86-133 (248)
36 TIGR02449 conserved hypothetic 56.5 20 0.00043 27.7 4.0 19 281-299 28-46 (65)
37 PF06005 DUF904: Protein of un 55.7 27 0.00058 27.3 4.7 24 276-299 27-50 (72)
38 KOG1318 Helix loop helix trans 54.7 36 0.00079 34.8 6.7 29 273-301 289-317 (411)
39 KOG4005 Transcription factor X 53.5 58 0.0013 31.4 7.4 32 269-300 91-123 (292)
40 cd07429 Cby_like Chibby, a nuc 52.4 24 0.00051 29.9 4.2 19 283-301 81-99 (108)
41 PF12709 Kinetocho_Slk19: Cent 51.6 32 0.00068 28.1 4.6 26 275-300 50-75 (87)
42 PF12709 Kinetocho_Slk19: Cent 51.5 38 0.00082 27.7 5.1 33 270-302 38-70 (87)
43 PF13863 DUF4200: Domain of un 51.1 1.2E+02 0.0025 24.8 8.1 50 252-301 59-108 (126)
44 PRK09413 IS2 repressor TnpA; R 50.2 25 0.00055 29.1 4.1 26 276-301 80-105 (121)
45 PF02183 HALZ: Homeobox associ 49.2 43 0.00093 23.9 4.5 26 277-302 15-40 (45)
46 PF05377 FlaC_arch: Flagella a 48.6 31 0.00068 25.9 3.9 22 278-299 11-32 (55)
47 KOG4571 Activating transcripti 47.7 96 0.0021 30.5 8.1 56 247-302 225-283 (294)
48 TIGR03752 conj_TIGR03752 integ 47.5 26 0.00056 36.4 4.4 19 277-295 76-94 (472)
49 PF14645 Chibby: Chibby family 46.8 29 0.00064 29.3 4.0 19 282-300 79-97 (116)
50 KOG0709 CREB/ATF family transc 45.5 55 0.0012 34.1 6.4 57 246-302 248-314 (472)
51 PF10226 DUF2216: Uncharacteri 45.2 1.3E+02 0.0027 28.1 8.0 54 250-303 20-77 (195)
52 PF14197 Cep57_CLD_2: Centroso 44.9 1.1E+02 0.0025 23.5 6.6 40 255-294 28-67 (69)
53 PRK13169 DNA replication intia 44.6 41 0.0009 28.4 4.5 30 274-303 22-51 (110)
54 cd05029 S-100A6 S-100A6: S-100 43.7 36 0.00077 26.9 3.8 55 45-131 24-78 (88)
55 KOG3335 Predicted coiled-coil 43.7 68 0.0015 29.4 6.0 21 274-294 113-133 (181)
56 PF12999 PRKCSH-like: Glucosid 43.1 1.6E+02 0.0035 26.9 8.3 34 267-300 139-172 (176)
57 PF06005 DUF904: Protein of un 42.0 55 0.0012 25.5 4.5 20 277-296 35-54 (72)
58 smart00243 GAS2 Growth-Arrest- 42.0 14 0.0003 29.3 1.2 12 119-130 55-66 (73)
59 PF14077 WD40_alt: Alternative 41.9 22 0.00047 26.0 2.1 21 274-294 18-38 (48)
60 PF06698 DUF1192: Protein of u 41.8 45 0.00097 25.3 3.8 22 276-297 23-44 (59)
61 KOG2829 E2F-like protein [Tran 41.6 58 0.0013 32.2 5.5 35 247-289 134-168 (326)
62 PF05103 DivIVA: DivIVA protei 41.3 40 0.00086 27.6 3.9 27 274-300 25-51 (131)
63 PF01475 FUR: Ferric uptake re 41.1 34 0.00073 27.8 3.4 37 90-136 25-61 (120)
64 PF07047 OPA3: Optic atrophy 3 40.8 55 0.0012 28.0 4.8 23 273-295 111-133 (134)
65 PF08781 DP: Transcription fac 40.5 1.4E+02 0.003 26.4 7.3 29 268-296 16-47 (142)
66 PF08563 P53_TAD: P53 transact 40.1 20 0.00044 22.9 1.5 19 80-98 4-22 (25)
67 KOG0977 Nuclear envelope prote 39.9 56 0.0012 34.7 5.5 24 281-304 56-79 (546)
68 PF06156 DUF972: Protein of un 39.4 56 0.0012 27.3 4.5 30 271-300 26-55 (107)
69 PF10224 DUF2205: Predicted co 38.4 64 0.0014 25.8 4.5 28 274-301 30-57 (80)
70 PHA02675 ORF104 fusion protein 38.3 2.2E+02 0.0049 23.3 7.6 53 247-299 31-83 (90)
71 COG3879 Uncharacterized protei 38.3 1.4E+02 0.0031 28.6 7.5 46 257-302 54-103 (247)
72 PRK13922 rod shape-determining 38.0 1E+02 0.0022 28.8 6.6 39 261-299 70-111 (276)
73 PF06305 DUF1049: Protein of u 37.3 47 0.001 24.3 3.4 11 283-293 57-67 (68)
74 PRK09413 IS2 repressor TnpA; R 37.1 64 0.0014 26.7 4.5 25 277-301 74-98 (121)
75 PF07716 bZIP_2: Basic region 37.1 1.6E+02 0.0034 21.1 6.3 27 270-296 28-54 (54)
76 PF13851 GAS: Growth-arrest sp 36.8 2.1E+02 0.0046 26.1 8.2 46 253-298 72-117 (201)
77 PRK00888 ftsB cell division pr 36.6 57 0.0012 26.9 4.1 24 265-288 39-62 (105)
78 KOG0288 WD40 repeat protein Ti 35.8 1.6E+02 0.0034 30.6 7.7 25 273-297 47-71 (459)
79 KOG1103 Predicted coiled-coil 35.7 91 0.002 31.9 6.0 48 250-300 111-158 (561)
80 TIGR02894 DNA_bind_RsfA transc 35.7 1.2E+02 0.0025 27.5 6.1 30 269-298 106-135 (161)
81 PF10473 CENP-F_leu_zip: Leuci 35.7 2.2E+02 0.0048 25.0 7.8 51 250-300 28-78 (140)
82 PF04999 FtsL: Cell division p 35.2 1.3E+02 0.0028 23.7 5.8 25 276-300 44-68 (97)
83 PF05377 FlaC_arch: Flagella a 34.5 75 0.0016 23.9 4.0 26 276-301 2-27 (55)
84 KOG4068 Uncharacterized conser 34.0 13 0.00029 33.6 -0.0 22 81-102 61-82 (174)
85 PRK13729 conjugal transfer pil 33.6 1.7E+02 0.0038 30.6 7.8 28 274-301 97-124 (475)
86 cd08533 SAM_PNT-ETS-1,2 Steril 33.3 22 0.00047 27.7 1.0 16 117-132 39-54 (71)
87 cd08757 SAM_PNT_ESE Sterile al 32.8 24 0.00051 27.0 1.2 17 116-132 38-54 (68)
88 COG1792 MreC Cell shape-determ 31.2 76 0.0016 30.6 4.6 25 275-299 84-108 (284)
89 cd08203 SAM_PNT Sterile alpha 31.1 27 0.00058 26.4 1.2 17 116-132 36-52 (66)
90 KOG3650 Predicted coiled-coil 30.6 65 0.0014 27.2 3.5 28 273-300 69-96 (120)
91 cd08540 SAM_PNT-ERG Sterile al 30.4 28 0.00062 27.4 1.3 17 117-133 41-57 (75)
92 PF11559 ADIP: Afadin- and alp 30.1 2.9E+02 0.0063 23.5 7.6 43 256-298 48-90 (151)
93 PF06785 UPF0242: Uncharacteri 30.0 74 0.0016 32.2 4.3 26 270-295 197-222 (401)
94 PF07047 OPA3: Optic atrophy 3 29.9 1.3E+02 0.0028 25.8 5.3 24 277-300 108-131 (134)
95 KOG0163 Myosin class VI heavy 29.3 1.4E+02 0.0031 33.5 6.5 35 258-292 960-995 (1259)
96 PF08232 Striatin: Striatin fa 29.0 2.6E+02 0.0057 24.0 7.1 44 257-300 15-58 (134)
97 KOG4343 bZIP transcription fac 29.0 70 0.0015 34.1 4.1 30 271-300 306-335 (655)
98 COG5509 Uncharacterized small 28.9 89 0.0019 24.1 3.6 23 275-297 26-48 (65)
99 PF14775 NYD-SP28_assoc: Sperm 28.8 1.2E+02 0.0025 22.9 4.3 15 281-295 40-54 (60)
100 TIGR00219 mreC rod shape-deter 28.6 81 0.0018 30.3 4.3 24 277-300 87-110 (283)
101 PRK13922 rod shape-determining 27.8 2.4E+02 0.0052 26.3 7.2 44 259-302 61-107 (276)
102 KOG1962 B-cell receptor-associ 27.0 2.3E+02 0.0051 26.7 6.8 47 253-299 165-211 (216)
103 PF05529 Bap31: B-cell recepto 26.9 3.1E+02 0.0067 24.3 7.4 30 271-300 158-187 (192)
104 PF13094 CENP-Q: CENP-Q, a CEN 26.7 3.1E+02 0.0068 23.6 7.3 44 258-301 46-90 (160)
105 cd07153 Fur_like Ferric uptake 26.6 72 0.0016 25.4 3.1 37 90-136 18-54 (116)
106 PF10186 Atg14: UV radiation r 26.6 3.6E+02 0.0077 24.7 8.1 11 276-286 72-82 (302)
107 PF04849 HAP1_N: HAP1 N-termin 26.4 84 0.0018 31.0 4.0 28 274-301 160-187 (306)
108 PRK11546 zraP zinc resistance 26.1 4.6E+02 0.01 23.2 8.3 53 250-302 46-110 (143)
109 cd05030 calgranulins Calgranul 25.8 33 0.00072 26.8 0.9 29 87-130 49-77 (88)
110 PF15086 UPF0542: Uncharacteri 25.2 78 0.0017 25.2 2.9 25 249-273 49-73 (74)
111 cd08532 SAM_PNT-PDEF-like Ster 25.0 37 0.0008 26.7 1.1 52 80-132 4-59 (76)
112 PF11500 Cut12: Spindle pole b 24.7 5.1E+02 0.011 23.2 8.2 48 249-296 80-127 (152)
113 PF11932 DUF3450: Protein of u 24.6 3.8E+02 0.0083 24.8 7.9 37 258-294 61-97 (251)
114 PF02344 Myc-LZ: Myc leucine z 24.6 1.7E+02 0.0038 19.8 4.0 24 279-302 6-29 (32)
115 PF07074 TRAP-gamma: Transloco 24.4 1.6E+02 0.0034 26.9 5.1 49 251-299 65-115 (170)
116 PF06311 NumbF: NUMB domain; 24.2 23 0.0005 29.0 -0.3 20 71-90 12-31 (88)
117 PRK14127 cell division protein 24.2 1.4E+02 0.0031 25.2 4.4 10 251-260 28-37 (109)
118 COG5562 Phage envelope protein 23.8 38 0.00081 29.8 1.0 17 119-135 87-106 (137)
119 cd04405 RhoGAP_BRCC3-like RhoG 23.6 36 0.00077 32.4 0.8 38 86-134 1-38 (235)
120 KOG2483 Upstream transcription 23.5 1.4E+02 0.0029 28.4 4.6 32 270-301 101-139 (232)
121 PF13747 DUF4164: Domain of un 23.5 3.9E+02 0.0085 21.4 7.3 46 251-296 9-54 (89)
122 TIGR02750 TraN_Ftype type-F co 23.3 55 0.0012 34.9 2.2 26 30-61 529-554 (572)
123 KOG3433 Protein involved in me 23.3 3.5E+02 0.0077 25.2 7.1 46 254-299 96-141 (203)
124 PF09727 CortBP2: Cortactin-bi 23.2 2.7E+02 0.0058 25.8 6.4 18 284-301 137-154 (192)
125 PF02183 HALZ: Homeobox associ 23.1 1.6E+02 0.0034 21.0 3.9 26 277-302 8-33 (45)
126 COG4467 Regulator of replicati 23.0 1.3E+02 0.0029 25.6 4.1 26 277-302 25-50 (114)
127 PF14257 DUF4349: Domain of un 23.0 2.7E+02 0.0058 25.8 6.6 44 257-300 145-188 (262)
128 PF04977 DivIC: Septum formati 22.9 1.5E+02 0.0033 21.9 4.1 23 271-293 28-50 (80)
129 PRK14877 conjugal transfer mat 22.5 60 0.0013 36.2 2.3 29 30-64 948-976 (1062)
130 PF14811 TPD: Protein of unkno 22.4 93 0.002 27.3 3.1 45 91-135 7-51 (139)
131 PF10482 CtIP_N: Tumour-suppre 22.4 3.5E+02 0.0076 23.4 6.5 29 269-297 91-119 (120)
132 PF06305 DUF1049: Protein of u 22.2 1.3E+02 0.0028 22.0 3.4 12 275-286 56-67 (68)
133 PRK12355 conjugal transfer mat 21.9 61 0.0013 34.4 2.2 27 30-62 515-541 (558)
134 PF13499 EF-hand_7: EF-hand do 21.8 66 0.0014 22.8 1.8 10 119-128 55-64 (66)
135 cd00213 S-100 S-100: S-100 dom 21.7 92 0.002 23.7 2.7 28 86-128 48-75 (88)
136 TIGR02449 conserved hypothetic 21.7 2E+02 0.0043 22.3 4.4 23 277-299 3-25 (65)
137 PF08961 DUF1875: Domain of un 21.6 31 0.00067 32.8 0.0 27 274-300 136-162 (243)
138 cd08534 SAM_PNT-GABP-alpha Ste 21.4 48 0.001 26.9 1.1 54 79-132 12-69 (89)
139 COG4279 Uncharacterized conser 21.0 65 0.0014 31.2 2.0 21 47-67 160-195 (266)
140 PF10211 Ax_dynein_light: Axon 21.0 5.4E+02 0.012 23.3 7.9 20 279-298 168-187 (189)
141 cd08538 SAM_PNT-ESE-2-like Ste 20.6 52 0.0011 26.2 1.1 16 117-132 44-59 (78)
142 PRK14474 F0F1 ATP synthase sub 20.3 5.9E+02 0.013 24.0 8.3 45 249-293 32-76 (250)
143 PF09766 FimP: Fms-interacting 20.2 4E+02 0.0087 26.4 7.4 41 257-297 112-152 (355)
144 cd08535 SAM_PNT-Tel_Yan Steril 20.0 52 0.0011 25.4 1.0 17 116-132 37-53 (68)
145 PF00170 bZIP_1: bZIP transcri 20.0 3.6E+02 0.0078 19.7 8.5 53 249-301 5-60 (64)
146 PF14931 IFT20: Intraflagellar 20.0 5.5E+02 0.012 21.8 8.0 47 249-295 55-108 (120)
No 1
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.27 E-value=1.2e-11 Score=114.77 Aligned_cols=66 Identities=35% Similarity=0.427 Sum_probs=62.5
Q ss_pred CCCCcccCCCcccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 235 TPGRKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 235 ~~~RKR~~~~~~~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
.+.|||++.+|+ ..+||-+||++|||++|+.+|.|||+++.++|.++.+|++||+.|+.+++.||.
T Consensus 53 ~~~rKr~RL~HL--S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 53 QPKRKRRRLDHL--SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred chHHHHHhhccc--CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999988 789999999999999999999999999999999999999999999999999875
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.21 E-value=4.5e-11 Score=89.68 Aligned_cols=52 Identities=48% Similarity=0.641 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 250 ~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.++|+.+|+++||+||++||.||++|+.+||.++..|+.+|..|+.+++.++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999998876654
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.21 E-value=4e-11 Score=121.27 Aligned_cols=58 Identities=40% Similarity=0.514 Sum_probs=53.6
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 245 DVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 245 ~~~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
..+|.++-||+.|||||||||+.||+|||+|+..||.++..|++||+.|++|+..||-
T Consensus 273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~ 330 (655)
T KOG4343|consen 273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKR 330 (655)
T ss_pred CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3467789999999999999999999999999999999999999999999999887764
No 4
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.21 E-value=1.8e-11 Score=116.21 Aligned_cols=59 Identities=32% Similarity=0.469 Sum_probs=53.7
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 245 DVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 245 ~~~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+.+|+...||+-|++||||+|+.+|+|||+|+.+||++|..||.+|.-|-.|+.-|+-|
T Consensus 283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999998887777654
No 5
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.12 E-value=1.9e-10 Score=86.12 Aligned_cols=52 Identities=44% Similarity=0.660 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 250 ~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
...++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..+.
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999998877664
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.07 E-value=7e-10 Score=80.85 Aligned_cols=51 Identities=47% Similarity=0.662 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 250 ~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.++++.+|. +||+||++||.|||+|+.+||.+|..|+.+|..|..+++.|.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888 999999999999999999999999999999999999988764
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.89 E-value=1.4e-09 Score=108.80 Aligned_cols=55 Identities=33% Similarity=0.514 Sum_probs=50.4
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 247 ~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.|+.+.||.||+|||++||+.||+|||+|++.||.+|....+||++|+++.+.+.
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le 299 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELE 299 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHh
Confidence 4667789999999999999999999999999999999999999999999877654
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.87 E-value=9.7e-07 Score=70.86 Aligned_cols=48 Identities=31% Similarity=0.474 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e 296 (306)
....|..||.+|||.+|+.||.||..++++||.++..|..+...|.++
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e 73 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQE 73 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999999999988876665555443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.55 E-value=0.00026 Score=67.14 Aligned_cols=66 Identities=27% Similarity=0.314 Sum_probs=48.5
Q ss_pred CCCcccCCCcccchhHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 236 PGRKRVASGDVVEKTVERR-QKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 236 ~~RKR~~~~~~~e~~~ekr-qrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
++++-..+.-..|..+..| .|..++||++|.+||+||-+++..||.+|..|+.+|..|-.+...++
T Consensus 188 ~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~ 254 (279)
T KOG0837|consen 188 PELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLK 254 (279)
T ss_pred cccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Confidence 4556554433333334333 44478999999999999999999999999999999988766554443
No 10
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.15 E-value=0.0018 Score=61.53 Aligned_cols=55 Identities=33% Similarity=0.446 Sum_probs=46.8
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 247 ~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.|++..+-..|..||=+++++||.+.|.-..+...+|..|++||+.|+.+++.++
T Consensus 188 ~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 188 VEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred hhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777999999999999999999999999999999999988877664
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.83 E-value=0.0038 Score=60.13 Aligned_cols=48 Identities=31% Similarity=0.470 Sum_probs=40.0
Q ss_pred hHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 250 TVERRQK-RMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 250 ~~ekrqr-R~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
..+|+.+ ..++|..+|.|=|+||++-.+.|+-+...|+.+|++||.+.
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 45677778999999999999999999999999999999764
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.91 E-value=0.0057 Score=63.99 Aligned_cols=49 Identities=31% Similarity=0.354 Sum_probs=43.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhc
Q 021853 255 QKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ-RVWFIFF 303 (306)
Q Consensus 255 qrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e-~e~~r~~ 303 (306)
.||.=|||.||+++|+||-.-|..||.+|..|..|-++|.++ .++++.+
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L 541 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTL 541 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567779999999999999999999999999999999998875 6666554
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=95.77 E-value=0.046 Score=47.35 Aligned_cols=51 Identities=25% Similarity=0.432 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 248 EKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 248 e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
|....|-.||-+|||==|+-+|-|+-..-++||.+...|..+.+.|+.++.
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s 98 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENS 98 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777899999999999999999999999765555555444444433
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=93.81 E-value=0.0092 Score=59.42 Aligned_cols=64 Identities=31% Similarity=0.400 Sum_probs=49.6
Q ss_pred CcccCCCcccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 021853 238 RKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLR-RQRVWFI 301 (306)
Q Consensus 238 RKR~~~~~~~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~-~e~e~~r 301 (306)
.+..+.....++.++++.|-+++||.+|-++|.|||.++..|+.+...+..+|..|. -+.+.|+
T Consensus 270 ~~~~~s~~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~ 334 (395)
T KOG1414|consen 270 TGGVRSRTVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLR 334 (395)
T ss_pred cccccccccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHH
Confidence 333333334456778886669999999999999999999999999999999998887 4444443
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=90.32 E-value=0.015 Score=57.96 Aligned_cols=49 Identities=31% Similarity=0.348 Sum_probs=42.2
Q ss_pred ccchhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 021853 246 VVEKTVERRQKRMIKNRESAAR---SRARKQAYTQELENKVSRLE-EENERLR 294 (306)
Q Consensus 246 ~~e~~~ekrqrR~iKNReSA~r---SR~RKk~y~~eLE~kv~~Le-~EN~~L~ 294 (306)
.-.+.+.|+..|+.+|+.+|.+ +|.||+.++..|+.+|+.|+ .+|..|.
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~ 199 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLS 199 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccC
Confidence 3446789999999999999999 99999999999999999999 5555443
No 16
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=87.51 E-value=2.6 Score=40.21 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=44.7
Q ss_pred CCcccchhHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 021853 243 SGDVVEKTVERRQKR----MIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFFFF 305 (306)
Q Consensus 243 ~~~~~e~~~ekrqrR----~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~~~ 305 (306)
+.+..++....|.+| +.|-|.+++.--..-+..+.+||.+.+.|+.+++.|++++..++.+++
T Consensus 187 ~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 187 PVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred chhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544554434333 446666666655666777899999999999999999999988886653
No 17
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.41 E-value=3.3 Score=31.45 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e 296 (306)
..+.+|+.+++.|+.||.-||..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666666666666653
No 18
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=76.69 E-value=7 Score=32.34 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 270 ARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 270 ~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.+.++.+.+++.++..|+.+|+.|+.+.+.++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455667777778888888888887777665
No 19
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.56 E-value=11 Score=28.24 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
..+..+..|+.+++.++++|..|+.+.+.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667889999999999999999888777
No 20
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.52 E-value=8 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+-++.|..++..|++.|.+|..+|..+|..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999999999999999865
No 21
>PHA03155 hypothetical protein; Provisional
Probab=71.20 E-value=5.4 Score=34.04 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
.-+++|+.++..|+-||..|++++
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999886
No 22
>PHA03162 hypothetical protein; Provisional
Probab=71.20 E-value=2.8 Score=36.60 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
+|+.-+++|+.++..|+-||..|++++
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999986
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.88 E-value=8 Score=32.31 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
-+.+|...+..|.+||..|+.+|+.||-
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666777777766666654
No 24
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=69.40 E-value=4.9 Score=28.75 Aligned_cols=42 Identities=45% Similarity=0.443 Sum_probs=13.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 255 QKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 255 qrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
.++...|++=|+..-.. ...+.+||.++..|..||..|+.+.
T Consensus 3 ~k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34555666655544433 2557899999999999999998764
No 25
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=68.64 E-value=10 Score=30.88 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.|+.+++.|+.++..++.+|..|..+++..|
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467789999999999999999999887665
No 26
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.22 E-value=9.5 Score=32.54 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 272 KQAYTQELENKVSRLEEENERLRR 295 (306)
Q Consensus 272 Kk~y~~eLE~kv~~Le~EN~~L~~ 295 (306)
=|+.+.+||++++.||+||.-|+.
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777777777766664
No 27
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=65.86 E-value=18 Score=26.87 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 277 QELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
.....++..|+.||..|+.+++.++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567789999999999999888764
No 28
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.79 E-value=30 Score=27.79 Aligned_cols=47 Identities=32% Similarity=0.442 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 252 ERRQKRMIKNRE-SAARSRARKQ----AYTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 252 ekrqrR~iKNRe-SA~rSR~RKk----~y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
-+.+.++.++=+ |-.+-|.||. ..+..|..++..|.++|..|+++.+
T Consensus 48 ~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 48 LKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555444 3344455554 4567788999999999999998764
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=65.01 E-value=12 Score=31.66 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
.++.+|.++...|+-||..|++.++
T Consensus 29 ~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 29 KQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454555555555555554433
No 30
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=63.99 E-value=13 Score=31.66 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+.++-|..++.+|++.|..|++|+.+++.+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999875
No 31
>smart00340 HALZ homeobox associated leucin zipper.
Probab=59.90 E-value=22 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021853 277 QELENKVSRLEEENERLRRQRVWFIFFF 304 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r~~~ 304 (306)
+-|..=-+.|.+||.+|+++.+.+|.+-
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556789999999999999888764
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.46 E-value=51 Score=30.46 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 276 TQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
+..++..++.|+++|.+|+++++
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544443
No 33
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.33 E-value=69 Score=27.06 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 252 ERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 252 ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
+.....+..++.|+..-|..=..-+.+++.++..|...|.-|..+++.+
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444456677777777777777778888889999999999998888764
No 34
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=56.98 E-value=45 Score=25.50 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.....+..++.+++.++.||.+|+.+...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445677888888888888888888766543
No 35
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=56.92 E-value=22 Score=33.80 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=25.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 252 ERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 252 ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
-.|-|-+.||.|=-..-|+= +.-+..|..+|+.|+..|.+|-.+.--+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~-~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQ-QQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554433333222 2345667777777777777776655443
No 36
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.53 E-value=20 Score=27.72 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021853 281 NKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 281 ~kv~~Le~EN~~L~~e~e~ 299 (306)
.++..+..|+..|..+++.
T Consensus 28 ~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 28 AQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 37
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.74 E-value=27 Score=27.26 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 276 TQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
+++|..+...|.++|..|+.+++.
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 38
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=54.69 E-value=36 Score=34.82 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 273 QAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.+...+++.+.+.|+.-|.+|..+++.|.
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk 317 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELK 317 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 34455666666677777777776655544
No 39
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=53.54 E-value=58 Score=31.44 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=24.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 269 RARKQAY-TQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 269 R~RKk~y-~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
|.-+-+| +.+|+.+-..|..||+.|+.+++-|
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 6789999999999999998877654
No 40
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=52.38 E-value=24 Score=29.86 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021853 283 VSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 283 v~~Le~EN~~L~~e~e~~r 301 (306)
...|++||+-|+-++|++.
T Consensus 81 ~~~LeEENNlLklKievLL 99 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888888888877764
No 41
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.56 E-value=32 Score=28.11 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
.+.+|+.++..|..||++|+.+++..
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666655443
No 42
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.46 E-value=38 Score=27.66 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 270 ARKQAYTQELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 270 ~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
.=||-|=...|.+|..|+.+|..|.++++.|+.
T Consensus 38 ~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~ 70 (87)
T PF12709_consen 38 ALKKSYEARWEKKVDELENENKALKRENEQLKK 70 (87)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888889999999999999999999998764
No 43
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.11 E-value=1.2e+02 Score=24.84 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 252 ERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 252 ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+.+..|-++.-+.+.+.+..|.+-+..|..++..|..+...|...++...
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777778888888888888888888877765543
No 44
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=50.21 E-value=25 Score=29.13 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 276 TQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+.+|+.++..|+.||.-|++..+..+
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777777778777777666554
No 45
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.21 E-value=43 Score=23.88 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 277 QELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
+.|..+...|..||+.|+.+...+..
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888776653
No 46
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=48.59 E-value=31 Score=25.90 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 278 ELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 278 eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
.++..+..++.||++|++..+.
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667666665544
No 47
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=47.67 E-value=96 Score=30.51 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 247 VEKTVERRQKRMI---KNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 247 ~e~~~ekrqrR~i---KNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
.+....||+.|++ |-|..-++.+.-=---++.||.+...|+..-.+|.+|+.-+|-
T Consensus 225 ~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 225 EKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777 3443333333332334456667777777777777776665553
No 48
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.48 E-value=26 Score=36.45 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021853 277 QELENKVSRLEEENERLRR 295 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~ 295 (306)
..|+.+-+.|.+||++|++
T Consensus 76 ~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 76 AKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 49
>PF14645 Chibby: Chibby family
Probab=46.82 E-value=29 Score=29.32 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 021853 282 KVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 282 kv~~Le~EN~~L~~e~e~~ 300 (306)
+...|++||+-|+-++++|
T Consensus 79 ~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 79 ENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777665
No 50
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=45.53 E-value=55 Score=34.05 Aligned_cols=57 Identities=26% Similarity=0.247 Sum_probs=43.8
Q ss_pred ccchhHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 246 VVEKTVERRQKRMIKNRESAARSRARKQAYT----------QELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 246 ~~e~~~ekrqrR~iKNReSA~rSR~RKk~y~----------~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
-+-|.+.|+.|-|+.-.||-++....=+..- .+|.++|..|+.+|..|..++..+..
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3447888888889988888888876544322 57889999999999999877665543
No 51
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=45.17 E-value=1.3e+02 Score=28.07 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 250 TVERRQKRMIKNRESAARSRARKQAY----TQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 250 ~~ekrqrR~iKNReSA~rSR~RKk~y----~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
..-+|.||....+.++-.-+-+=-.- +...=.++..|++.|++|+.+|+.||-+
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888777776555443222 2233356788888899998888887754
No 52
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.89 E-value=1.1e+02 Score=23.53 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 255 QKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 255 qrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~ 294 (306)
.+++.+-|.+|.++=..+-..+.+|-.++..|++|++.++
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666655554555555555555555544443
No 53
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=44.59 E-value=41 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+-+.+|...+..|.+||..|+.+|+.||..
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999999854
No 54
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=43.73 E-value=36 Score=26.90 Aligned_cols=55 Identities=20% Similarity=0.421 Sum_probs=37.0
Q ss_pred CCCCCCcHHHHHHhhhhcccCCCCCCCcccccCCCCccCcccccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHH
Q 021853 45 KPLGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLE 124 (306)
Q Consensus 45 K~fgSMNmDElLknIwtaEe~q~~~~~~~LqRQgSltLp~~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLE 124 (306)
++-|.++.+||.+ +++.+ +++-..++.+-|+++++++-... + |.++.+
T Consensus 24 ~~~g~Is~~EL~~-~l~~~----------------~~lg~k~t~~ev~~m~~~~D~d~--d-------------G~Idf~ 71 (88)
T cd05029 24 GDKNTLSKKELKE-LIQKE----------------LTIGSKLQDAEIAKLMEDLDRNK--D-------------QEVNFQ 71 (88)
T ss_pred CCCCEECHHHHHH-HHHHH----------------HhcCCCCCHHHHHHHHHHhcCCC--C-------------CCCcHH
Confidence 3789999999655 54421 11223467788999999885432 1 788999
Q ss_pred HHHHHhc
Q 021853 125 DFLIKAG 131 (306)
Q Consensus 125 dFLVrAG 131 (306)
||+.--+
T Consensus 72 EFv~lm~ 78 (88)
T cd05029 72 EYVTFLG 78 (88)
T ss_pred HHHHHHH
Confidence 9976443
No 55
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=43.71 E-value=68 Score=29.45 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~ 294 (306)
..+++||.++..++.....|.
T Consensus 113 ~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 113 LKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555553
No 56
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=43.08 E-value=1.6e+02 Score=26.89 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 267 RSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 267 rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
.-=++|++|+.+.+.+...++++..+|+++++..
T Consensus 139 ~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 139 EGLKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566888888888888888888888776543
No 57
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.03 E-value=55 Score=25.51 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021853 277 QELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e 296 (306)
..|..+...|+.||++|+.+
T Consensus 35 ~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 35 NELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666654
No 58
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=42.00 E-value=14 Score=29.28 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.6
Q ss_pred chhhHHHHHHHh
Q 021853 119 GEMTLEDFLIKA 130 (306)
Q Consensus 119 GEMTLEdFLVrA 130 (306)
|=||||+||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 789999999984
No 59
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=41.86 E-value=22 Score=26.00 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~ 294 (306)
.++.+||.+|..|++-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 456778888888877777664
No 60
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.79 E-value=45 Score=25.32 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 276 TQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
+++|+.++..|+.|..+++.+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665543
No 61
>KOG2829 consensus E2F-like protein [Transcription]
Probab=41.56 E-value=58 Score=32.19 Aligned_cols=35 Identities=37% Similarity=0.403 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEE 289 (306)
Q Consensus 247 ~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~E 289 (306)
+++.++.|+|||.+= ++|++|++||+.++..++.-
T Consensus 134 v~~le~Er~k~~erI--------~kK~a~lqEl~~q~~~fknL 168 (326)
T KOG2829|consen 134 VSELEEERKKRMERI--------KKKAAQLQELIEQVSAFKNL 168 (326)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 444555666665543 78899999999988776543
No 62
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.28 E-value=40 Score=27.64 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
.|++.|...+..|..+|..|+.+++.+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l 51 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEEL 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666655443
No 63
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.11 E-value=34 Score=27.79 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=23.5
Q ss_pred cHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhcccccC
Q 021853 90 TVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNES 136 (306)
Q Consensus 90 TVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV~e~ 136 (306)
|++|||+.+.+... . -+..+-=| ||+ +|+++|+|..-
T Consensus 25 ta~ei~~~l~~~~~-~-is~~TVYR-------~L~-~L~e~Gli~~~ 61 (120)
T PF01475_consen 25 TAEEIYDKLRKKGP-R-ISLATVYR-------TLD-LLEEAGLIRKI 61 (120)
T ss_dssp EHHHHHHHHHHTTT-T---HHHHHH-------HHH-HHHHTTSEEEE
T ss_pred CHHHHHHHhhhccC-C-cCHHHHHH-------HHH-HHHHCCeEEEE
Confidence 89999999975331 1 01122222 565 99999999864
No 64
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=40.79 E-value=55 Score=28.04 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 273 QAYTQELENKVSRLEEENERLRR 295 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~ 295 (306)
++.+++||.++..|+.+.+++..
T Consensus 111 ~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 111 QERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667788888888877776653
No 65
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=40.46 E-value=1.4e+02 Score=26.37 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 021853 268 SRARKQAYTQELENKVSR---LEEENERLRRQ 296 (306)
Q Consensus 268 SR~RKk~y~~eLE~kv~~---Le~EN~~L~~e 296 (306)
.=++|++|+.+|...... |-..|..+...
T Consensus 16 rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 16 RIKKKKEQLQELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 347899999999976554 45566655543
No 66
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=40.13 E-value=20 Score=22.92 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.8
Q ss_pred CccCcccccccHHHHhHHH
Q 021853 80 LTLAQDLSNKTVDEVWKDI 98 (306)
Q Consensus 80 ltLp~~Ls~KTVDEVWrdI 98 (306)
.++-.+||+.|-++.|+-+
T Consensus 4 ~~~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 4 ESPELPLSQETFSDLWNLL 22 (25)
T ss_dssp SS-----STCCHHHHHHTS
T ss_pred cCCCCCccHHHHHHHHHhc
Confidence 4556789999999999854
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=39.90 E-value=56 Score=34.67 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 021853 281 NKVSRLEEENERLRRQRVWFIFFF 304 (306)
Q Consensus 281 ~kv~~Le~EN~~L~~e~e~~r~~~ 304 (306)
.||..||.||..|...+.+++..+
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 589999999999999988887643
No 68
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=39.41 E-value=56 Score=27.32 Aligned_cols=30 Identities=33% Similarity=0.303 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
.=|.++.+|..+-..|+-||..|+..+..+
T Consensus 26 ~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 26 ELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335778999999999999999999886554
No 69
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=38.40 E-value=64 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.-+..|=.+|...++||.+|+.+|+.|.
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888764
No 70
>PHA02675 ORF104 fusion protein; Provisional
Probab=38.31 E-value=2.2e+02 Score=23.31 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=42.4
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 247 ~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
-++..++|+.++++.=.---.++..--+.+.-||...+.|.+-.-.|-++++.
T Consensus 31 ~~esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKIDV 83 (90)
T PHA02675 31 SKESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKIDV 83 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Confidence 34678899999998887777788888888888998888888877777776653
No 71
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.29 E-value=1.4e+02 Score=28.64 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Q 021853 257 RMIKNRESAARSRARKQAYTQELENKVSRLE----EENERLRRQRVWFIF 302 (306)
Q Consensus 257 R~iKNReSA~rSR~RKk~y~~eLE~kv~~Le----~EN~~L~~e~e~~r~ 302 (306)
++.+--.+.+..+.+.+..+++||++++..+ .-+..|..+.+.++.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 4444445666777888888999999998888 455556666666654
No 72
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.04 E-value=1e+02 Score=28.81 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 021853 261 NRESAARSRARKQAYTQELENKVS---RLEEENERLRRQRVW 299 (306)
Q Consensus 261 NReSA~rSR~RKk~y~~eLE~kv~---~Le~EN~~L~~e~e~ 299 (306)
+.......-++=++.+.+|+.++. .|++||++|++.+.+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333333344444544333 566777777765544
No 73
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.26 E-value=47 Score=24.35 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 021853 283 VSRLEEENERL 293 (306)
Q Consensus 283 v~~Le~EN~~L 293 (306)
++.+++|+++|
T Consensus 57 l~~le~e~~~l 67 (68)
T PF06305_consen 57 LKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHhc
Confidence 44444444443
No 74
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=37.07 E-value=64 Score=26.73 Aligned_cols=25 Identities=4% Similarity=0.003 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 277 QELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
..++.++..|+.++.+|+.+++.|+
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLK 98 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLK 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666677777777776666654
No 75
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.06 E-value=1.6e+02 Score=21.12 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 270 ARKQAYTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 270 ~RKk~y~~eLE~kv~~Le~EN~~L~~e 296 (306)
.--...+..|+.+...|..++..|+++
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334567889999999999999999875
No 76
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=36.84 E-value=2.1e+02 Score=26.11 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=32.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 253 krqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
...++.+++-++-+.+=..-++.+..++.++..|+-|++.|..+++
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~ 117 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFE 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777666677777888888888877777765543
No 77
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.57 E-value=57 Score=26.95 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 265 AARSRARKQAYTQELENKVSRLEE 288 (306)
Q Consensus 265 A~rSR~RKk~y~~eLE~kv~~Le~ 288 (306)
++..-++.++.-..|+.++..|+.
T Consensus 39 ~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333334445555666666666654
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=35.85 E-value=1.6e+02 Score=30.61 Aligned_cols=25 Identities=44% Similarity=0.575 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 273 QAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
++.+.++|.+++.|++||..|..+.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999998887653
No 79
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=35.72 E-value=91 Score=31.89 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 250 ~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
..|+|.|.+|+.-|+- |.++-.|..+-..-+..|++|-++|..++|.+
T Consensus 111 AaE~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQiEFe 158 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQIEFE 158 (561)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4567777777765543 44555555555555666777777777665544
No 80
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.69 E-value=1.2e+02 Score=27.48 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 269 RARKQAYTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 269 R~RKk~y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
..+.+..+.+|..++..|+.||++|.++..
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777778888777766543
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.68 E-value=2.2e+02 Score=24.98 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 250 ~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
..+|.......|++.+-.--.-+|+.+..|+.++..+..+...|..++..+
T Consensus 28 ~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 28 SLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667788888888888888888888888887776666665554443
No 82
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=35.23 E-value=1.3e+02 Score=23.73 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 276 TQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
++.|+.+...|+.||.+|+-|...+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888889999999999988776554
No 83
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.49 E-value=75 Score=23.88 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 276 TQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+.+||+++..++.....++++++.++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~ 27 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEIS 27 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666554
No 84
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.04 E-value=13 Score=33.55 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=18.6
Q ss_pred ccCcccccccHHHHhHHHhhcc
Q 021853 81 TLAQDLSNKTVDEVWKDIRQKK 102 (306)
Q Consensus 81 tLp~~Ls~KTVDEVWrdI~~~~ 102 (306)
+|-|.||.--|||||.++.+..
T Consensus 61 ~l~R~Ls~~~i~~Il~~l~k~g 82 (174)
T KOG4068|consen 61 KLQRRLSQEFIDEILEELEKKG 82 (174)
T ss_pred HHhccCCHHHHHHHHHHHHHcc
Confidence 4566899999999999999865
No 85
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.56 E-value=1.7e+02 Score=30.60 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+...++|.+++.|+.||..|+.+.+.++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4446789999999999999999876544
No 86
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=33.25 E-value=22 Score=27.73 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.3
Q ss_pred ccchhhHHHHHHHhcc
Q 021853 117 SLGEMTLEDFLIKAGA 132 (306)
Q Consensus 117 TLGEMTLEdFLVrAGV 132 (306)
-|=.||.|||+.||+-
T Consensus 39 ~LC~ls~edF~~~~p~ 54 (71)
T cd08533 39 DLCALGKERFLELAPD 54 (71)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 3567999999999874
No 87
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=32.77 E-value=24 Score=27.00 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=14.6
Q ss_pred cccchhhHHHHHHHhcc
Q 021853 116 TSLGEMTLEDFLIKAGA 132 (306)
Q Consensus 116 ~TLGEMTLEdFLVrAGV 132 (306)
..|=.||.|||+.||+.
T Consensus 38 k~LC~ms~edF~~~~p~ 54 (68)
T cd08757 38 QTLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHHcCCHHHHHHHcCC
Confidence 45778999999999976
No 88
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=31.20 E-value=76 Score=30.56 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 275 YTQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
-+..+..++..|++||++|++.+..
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566678899999999999987543
No 89
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=31.05 E-value=27 Score=26.44 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=14.6
Q ss_pred cccchhhHHHHHHHhcc
Q 021853 116 TSLGEMTLEDFLIKAGA 132 (306)
Q Consensus 116 ~TLGEMTLEdFLVrAGV 132 (306)
..|=.||.|||+.|++.
T Consensus 36 ~~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 36 KELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHHhCCHHHHHHHcCC
Confidence 45778999999999976
No 90
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.64 E-value=65 Score=27.23 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 273 QAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
+..+++|-.+|...++||-+|+.++..+
T Consensus 69 QnTLdDLSqRVdsVKEEnLKLrSENQVL 96 (120)
T KOG3650|consen 69 QNTLDDLSQRVDSVKEENLKLRSENQVL 96 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 4567888899999999999999988765
No 91
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=30.41 E-value=28 Score=27.36 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=13.9
Q ss_pred ccchhhHHHHHHHhccc
Q 021853 117 SLGEMTLEDFLIKAGAV 133 (306)
Q Consensus 117 TLGEMTLEdFLVrAGVV 133 (306)
-|=.||.|||+.+|+-.
T Consensus 41 ~LC~LskedF~~~ap~~ 57 (75)
T cd08540 41 ELCKMTKDDFQRLTPSY 57 (75)
T ss_pred HHHhCCHHHHHHHcCCC
Confidence 36689999999999754
No 92
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=30.13 E-value=2.9e+02 Score=23.48 Aligned_cols=43 Identities=30% Similarity=0.425 Sum_probs=26.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 256 KRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 256 rR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
.|=...|+.......++..-+..|+..+..|+.+++.+.++..
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666666665543
No 93
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.97 E-value=74 Score=32.15 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 270 ARKQAYTQELENKVSRLEEENERLRR 295 (306)
Q Consensus 270 ~RKk~y~~eLE~kv~~Le~EN~~L~~ 295 (306)
++||+|+-.||.||.+|-.|...|..
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 94
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=29.95 E-value=1.3e+02 Score=25.77 Aligned_cols=24 Identities=33% Similarity=0.381 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 277 QELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
++++.+++.|+.+.++|..+.+.+
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888776654
No 95
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=29.31 E-value=1.4e+02 Score=33.51 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 021853 258 MIKNRESAARSRARKQAYTQELENKVS-RLEEENER 292 (306)
Q Consensus 258 ~iKNReSA~rSR~RKk~y~~eLE~kv~-~Le~EN~~ 292 (306)
|+-.|..+-.-|++.++|-..|+.++. +|.+|-++
T Consensus 960 ~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~ee 995 (1259)
T KOG0163|consen 960 METKRKAEEEQRKAQEEEERRLALELQEQLAKEAEE 995 (1259)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444455555556666666666665555 45444433
No 96
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.04 E-value=2.6e+02 Score=23.96 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=24.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 257 RMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 257 R~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
|..+.|..+--.|+==|+.|..||-+...++.-|..|.+...+|
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkML 58 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKML 58 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555666666666665555555555544433
No 97
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=29.02 E-value=70 Score=34.12 Aligned_cols=30 Identities=30% Similarity=0.265 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
-=++.++.|+.+-+.|+.||.-|+++++++
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 346778999999999999999999998765
No 98
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=28.89 E-value=89 Score=24.13 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 275 YTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
-+.+|+.++..|..|.++|+.+.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999998888764
No 99
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=28.76 E-value=1.2e+02 Score=22.87 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021853 281 NKVSRLEEENERLRR 295 (306)
Q Consensus 281 ~kv~~Le~EN~~L~~ 295 (306)
.++..|+++|.+|+.
T Consensus 40 ~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 40 QEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 100
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.60 E-value=81 Score=30.25 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 277 QELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
.+|+.....|++||++|++.+++.
T Consensus 87 ~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 87 QQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444445556899999999877654
No 101
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.77 E-value=2.4e+02 Score=26.31 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=22.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhh
Q 021853 259 IKNRESAARSRARKQAYTQELENKVSRLEEENE---RLRRQRVWFIF 302 (306)
Q Consensus 259 iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~---~L~~e~e~~r~ 302 (306)
++.-...-.+...=++.-++|++++..|+.++. .|++|++.|+.
T Consensus 61 ~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 61 VSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444445556666666666555 34455555554
No 102
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=26.97 E-value=2.3e+02 Score=26.69 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=30.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 253 krqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
.+.+.+.+-=+.|.....-=+.+.+++-.+...|.+|+++|+.+.+.
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 33444444455555555544556677777888888888888877653
No 103
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.89 E-value=3.1e+02 Score=24.30 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
++++-+++|+.+++..+.+.+.|++|.+-+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777888888876654
No 104
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.66 E-value=3.1e+02 Score=23.59 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 021853 258 MIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ-RVWFI 301 (306)
Q Consensus 258 ~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e-~e~~r 301 (306)
+.+.-.......++=.+|+.+||..+..++.++.++.++ ...++
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 334444555566777799999999999999999988776 44443
No 105
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.61 E-value=72 Score=25.43 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=23.4
Q ss_pred cHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhcccccC
Q 021853 90 TVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNES 136 (306)
Q Consensus 90 TVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV~e~ 136 (306)
|++|||..+.+....- +..+-=| ||+ +|+.+|+|+.-
T Consensus 18 sa~ei~~~l~~~~~~i--~~~TVYR-------~L~-~L~~~Gli~~~ 54 (116)
T cd07153 18 TAEEIYERLRKKGPSI--SLATVYR-------TLE-LLEEAGLVREI 54 (116)
T ss_pred CHHHHHHHHHhcCCCC--CHHHHHH-------HHH-HHHhCCCEEEE
Confidence 8999999996543100 1111222 565 89999999864
No 106
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.58 E-value=3.6e+02 Score=24.70 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 021853 276 TQELENKVSRL 286 (306)
Q Consensus 276 ~~eLE~kv~~L 286 (306)
+..|+.++..+
T Consensus 72 ~~~l~~~i~~~ 82 (302)
T PF10186_consen 72 LERLRERIERL 82 (302)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 107
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.41 E-value=84 Score=31.04 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
..++.|..|+..|++||..|+.+...+.
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666777777666655443
No 108
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.09 E-value=4.6e+02 Score=23.17 Aligned_cols=53 Identities=25% Similarity=0.218 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhh
Q 021853 250 TVERRQKRMIKNRESAARSRARKQAYTQELE------------NKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 250 ~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE------------~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
++...+...|.+.--++-...|.+-|....| .++..|.+|+..|+.++..+|+
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666665554 3688999999999988777665
No 109
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=25.82 E-value=33 Score=26.81 Aligned_cols=29 Identities=24% Similarity=0.699 Sum_probs=20.3
Q ss_pred ccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHh
Q 021853 87 SNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKA 130 (306)
Q Consensus 87 s~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrA 130 (306)
+.+-|+++|+++-... =|.+|.+||+.--
T Consensus 49 ~~~~v~~i~~~~D~d~---------------dG~I~f~eF~~~~ 77 (88)
T cd05030 49 NQKAIDKIFEDLDTNQ---------------DGQLSFEEFLVLV 77 (88)
T ss_pred CHHHHHHHHHHcCCCC---------------CCcCcHHHHHHHH
Confidence 3667888888774322 1889999998643
No 110
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=25.16 E-value=78 Score=25.17 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQ 273 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk 273 (306)
+.+||+++++.|..+.-..+|+.|+
T Consensus 49 e~~ere~K~k~Kr~~~i~k~rr~k~ 73 (74)
T PF15086_consen 49 EKEEREKKKKAKRQANIAKARRTKK 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567777777776666666666554
No 111
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=24.96 E-value=37 Score=26.74 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=30.1
Q ss_pred CccCcccccccHHHHhHHHhhccC----CCchhhHHhhhhcccchhhHHHHHHHhcc
Q 021853 80 LTLAQDLSNKTVDEVWKDIRQKKS----DDNQENEAQARQTSLGEMTLEDFLIKAGA 132 (306)
Q Consensus 80 ltLp~~Ls~KTVDEVWrdI~~~~~----~~~~~~~~~~rQ~TLGEMTLEdFLVrAGV 132 (306)
|.||..--.=|.+.|+.=+.--.. +. ....-.---..|=.||.|||+.||+.
T Consensus 4 L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~-~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 4 LGISPDPYQWSPANVQKWLLWTEHQYRLPP-PPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred CCCCCChhhcCHHHHHHHHHHHHHHhCCCC-chhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 456666666778888776653110 01 00000111246778999999999865
No 112
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=24.69 E-value=5.1e+02 Score=23.20 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e 296 (306)
...++..+++|+.|..|+--=++|-+-..+|..++...++...++.+.
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~ 127 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERH 127 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888766665555556566666666555544444444443
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.63 E-value=3.8e+02 Score=24.81 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=18.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 258 MIKNRESAARSRARKQAYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 258 ~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~ 294 (306)
+.+-.+....-.++-+.|+..++.++..|+++...+.
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555444
No 114
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=24.59 E-value=1.7e+02 Score=19.78 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 279 LENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 279 LE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
|-.+.+.|....+.|+.++|.+|.
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566777777777777777664
No 115
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=24.38 E-value=1.6e+02 Score=26.87 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 021853 251 VERRQKRMIKNRESAARSRARKQAYTQELE--NKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 251 ~ekrqrR~iKNReSA~rSR~RKk~y~~eLE--~kv~~Le~EN~~L~~e~e~ 299 (306)
.-|-.+|++|.+.+++|.-+=.++....+- +|+..-++|-.-|+|++|.
T Consensus 65 AYkNvk~~lKhKIa~kR~~aVt~ev~~k~~~dKK~~~kekderil~kkneV 115 (170)
T PF07074_consen 65 AYKNVKFVLKHKIAVKREEAVTREVNKKLADDKKMSKKEKDERILWKKNEV 115 (170)
T ss_pred HHHhHHHHHHHHHHHhhhHHHHHHHHHhhccccccchHHHHHHHHHHhhhh
Confidence 455666667766666666555555554444 5666666666667777764
No 116
>PF06311 NumbF: NUMB domain; InterPro: IPR010449 This entry represents a domain found in the cell-fate determinant Numb, and in related proteins. In Drosophila, two signalling pathways, one mediated by Numb and the other by Notch, play essential but antagonistic roles in enabling the two daughters to adopt different fates after a wide variety of asymmetric cell divisions []. Numb acts to inhibit Notch signalling, this inhibition being critical for many cell fate decisions []. Mammalian Numb (mNumb) has multiple functions and plays important roles in the regulation of neural development, including maintenance of neural progenitor cells and promotion of neuronal differentiation in the central nervous system (CNS) [].
Probab=24.22 E-value=23 Score=28.98 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=16.3
Q ss_pred CcccccCCCCccCccccccc
Q 021853 71 ALSLHRQGSLTLAQDLSNKT 90 (306)
Q Consensus 71 ~~~LqRQgSltLp~~Ls~KT 90 (306)
..-|.|||||-....|+++|
T Consensus 12 ~~~L~RQgS~R~f~~l~~~~ 31 (88)
T PF06311_consen 12 PSMLERQGSFRGFPKLSQQT 31 (88)
T ss_pred HHHHHhhhcccccccccccC
Confidence 34589999999888888873
No 117
>PRK14127 cell division protein GpsB; Provisional
Probab=24.15 E-value=1.4e+02 Score=25.17 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 021853 251 VERRQKRMIK 260 (306)
Q Consensus 251 ~ekrqrR~iK 260 (306)
++.=+-..++
T Consensus 28 VD~FLd~V~~ 37 (109)
T PRK14127 28 VDKFLDDVIK 37 (109)
T ss_pred HHHHHHHHHH
Confidence 3333434443
No 118
>COG5562 Phage envelope protein [General function prediction only]
Probab=23.84 E-value=38 Score=29.84 Aligned_cols=17 Identities=41% Similarity=0.689 Sum_probs=14.5
Q ss_pred chhhHHHH---HHHhccccc
Q 021853 119 GEMTLEDF---LIKAGAVNE 135 (306)
Q Consensus 119 GEMTLEdF---LVrAGVV~e 135 (306)
||.|.|+| |.+|||.|=
T Consensus 87 GqttF~ef~~~la~AGVfrw 106 (137)
T COG5562 87 GQTTFEEFCSALAEAGVFRW 106 (137)
T ss_pred CCccHHHHHHHHHhCCeEEE
Confidence 88899999 579999874
No 119
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.63 E-value=36 Score=32.43 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=23.8
Q ss_pred cccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhcccc
Q 021853 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVN 134 (306)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV~ 134 (306)
||.+-|+|||+++.-. .=+.-+|==-||+-|--+.|.-
T Consensus 1 ls~~~v~evW~~~tl~-----------~Ll~l~glp~Ld~vl~~~~~~p 38 (235)
T cd04405 1 LSPEVVEEIWKEQTLI-----------RLLQLVGLPLLEELLDPALVNP 38 (235)
T ss_pred CCHHHHHHHHHHHHHH-----------HHHHHcCCccHHHHhcccCCCC
Confidence 5678899999987431 1244555556777776554443
No 120
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=23.48 E-value=1.4e+02 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Q 021853 270 ARKQAYTQELEN-------KVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 270 ~RKk~y~~eLE~-------kv~~Le~EN~~L~~e~e~~r 301 (306)
.|+++|+..|+. .++.|+.||..|+++++.+.
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567789998885 45666777777777665543
No 121
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=23.45 E-value=3.9e+02 Score=21.43 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 251 VERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 251 ~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e 296 (306)
..+|+.+.+.+-+++-..|--+..-..+||.++..|.....+|-.+
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~e 54 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQE 54 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHH
Confidence 4455555555555555554444444455555555555444444433
No 122
>TIGR02750 TraN_Ftype type-F conjugative transfer system mating-pair stabilization protein TraN. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilization (adhesin) component of the F-type conjugative plamid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.
Probab=23.34 E-value=55 Score=34.90 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.8
Q ss_pred eehhhHHHhhhcCCCCCCCCCcHHHHHHhhhh
Q 021853 30 NLTLDEIQSQLGDRGKPLGSMNLDELLKSVWT 61 (306)
Q Consensus 30 SLTlDE~Q~~Lg~~GK~fgSMNmDElLknIwt 61 (306)
-+|+||||.- ||..|+|.||...|-.
T Consensus 529 G~t~~elq~i------dfs~iD~se~~~~l~~ 554 (572)
T TIGR02750 529 GITPEELQQI------NFESIDFSPFYEDLHN 554 (572)
T ss_pred CCCHHHHhhC------CcccccHHHHHHHHHh
Confidence 5799999986 9999999999988754
No 123
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.26 E-value=3.5e+02 Score=25.24 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 254 RQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 254 rqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
+..++-.-=|.+.+.|....+..++|+.+++.|.++.+.|+-++..
T Consensus 96 k~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 96 KKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred hHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555667778888888888999988888877777766544
No 124
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=23.23 E-value=2.7e+02 Score=25.85 Aligned_cols=18 Identities=39% Similarity=0.331 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021853 284 SRLEEENERLRRQRVWFI 301 (306)
Q Consensus 284 ~~Le~EN~~L~~e~e~~r 301 (306)
.-|+.|-++|++++|.++
T Consensus 137 ~lLEkEReRLkq~lE~Ek 154 (192)
T PF09727_consen 137 NLLEKERERLKQQLEQEK 154 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346666666666665554
No 125
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.14 E-value=1.6e+02 Score=20.99 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 277 QELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
+-|-.....|..+|..|.++++.++.
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~a 33 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRA 33 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777776653
No 126
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.05 E-value=1.3e+02 Score=25.62 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 277 QELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
..|...+..|-+||..|+-+++.||-
T Consensus 25 ~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 25 GGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 34444455555566666666665553
No 127
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.03 E-value=2.7e+02 Score=25.85 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=32.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 257 RMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 257 R~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
+....|.-+-..+..+.+-+.++|.++...+.|.+.|+.++..+
T Consensus 145 ~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 145 EAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545555566778888899999999999999998765443
No 128
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.85 E-value=1.5e+02 Score=21.85 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 271 RKQAYTQELENKVSRLEEENERL 293 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L 293 (306)
..+.-++.|+.+...|+.+.+.|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444566666666666666666
No 129
>PRK14877 conjugal transfer mating pair stabilization protein TraN; Provisional
Probab=22.51 E-value=60 Score=36.21 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.6
Q ss_pred eehhhHHHhhhcCCCCCCCCCcHHHHHHhhhhccc
Q 021853 30 NLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTAEN 64 (306)
Q Consensus 30 SLTlDE~Q~~Lg~~GK~fgSMNmDElLknIwtaEe 64 (306)
-+|+||||.- ||..|+|+||+..|--+..
T Consensus 948 GfT~eEfQkL------DFSkIDlSEf~~dl~~a~~ 976 (1062)
T PRK14877 948 GLSIKQIQQL------DFDKIDLTEWINDAVQVGE 976 (1062)
T ss_pred CcCHHHHhhC------CcccccHHHHHHHHHHhcc
Confidence 4799999986 9999999999999987655
No 130
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=22.41 E-value=93 Score=27.31 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=30.3
Q ss_pred HHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhccccc
Q 021853 91 VDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNE 135 (306)
Q Consensus 91 VDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV~e 135 (306)
-.|||+-|.....-+.-...........+|..||+.|.+.||.--
T Consensus 7 ~~ev~~~~~~D~~ysp~~~~~~~~~g~e~E~~L~~~L~~~gi~f~ 51 (139)
T PF14811_consen 7 AYEVQQCIYNDNQYSPLADQIRHAIGQEYEVILEKYLRKLGIPFL 51 (139)
T ss_pred HHHHHHHHhcccccCcHHHHHHHHhHHHHHHHHHHHHHHCCCccc
Confidence 357888876543211112333455788899999999999998654
No 131
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=22.41 E-value=3.5e+02 Score=23.37 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 269 RARKQAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 269 R~RKk~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
...--.++..|..+.+.|++||..|+.+.
T Consensus 91 ~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 91 HLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34445678899999999999999998774
No 132
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.20 E-value=1.3e+02 Score=21.99 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 021853 275 YTQELENKVSRL 286 (306)
Q Consensus 275 y~~eLE~kv~~L 286 (306)
.++.+|++++.|
T Consensus 56 ~l~~le~e~~~l 67 (68)
T PF06305_consen 56 ELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHhc
Confidence 345555555543
No 133
>PRK12355 conjugal transfer mating pair stabilization protein TraN; Reviewed
Probab=21.93 E-value=61 Score=34.44 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=23.4
Q ss_pred eehhhHHHhhhcCCCCCCCCCcHHHHHHhhhhc
Q 021853 30 NLTLDEIQSQLGDRGKPLGSMNLDELLKSVWTA 62 (306)
Q Consensus 30 SLTlDE~Q~~Lg~~GK~fgSMNmDElLknIwta 62 (306)
-+|+||||.- ||..|++.||...|-.+
T Consensus 515 g~t~~elq~i------dfs~id~se~~~~~~~~ 541 (558)
T PRK12355 515 GFTVDELQKI------DFSRIDFSEFYEDLMNN 541 (558)
T ss_pred CCCHHHHhhC------CcccccHHHHHHHHHhh
Confidence 4799999986 99999999999888653
No 134
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=21.80 E-value=66 Score=22.82 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=8.4
Q ss_pred chhhHHHHHH
Q 021853 119 GEMTLEDFLI 128 (306)
Q Consensus 119 GEMTLEdFLV 128 (306)
|.++++||+-
T Consensus 55 G~i~~~Ef~~ 64 (66)
T PF13499_consen 55 GRISFDEFLN 64 (66)
T ss_dssp SSEEHHHHHH
T ss_pred CCCcHHHHhc
Confidence 8899999973
No 135
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=21.73 E-value=92 Score=23.66 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=20.2
Q ss_pred cccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHH
Q 021853 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLI 128 (306)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLV 128 (306)
.+.+.|+++|+.+-... =|-+|+++|+.
T Consensus 48 ~~~~ei~~i~~~~d~~~---------------~g~I~f~eF~~ 75 (88)
T cd00213 48 KDPEAVDKIMKDLDVNK---------------DGKVDFQEFLV 75 (88)
T ss_pred CCHHHHHHHHHHhccCC---------------CCcCcHHHHHH
Confidence 35677899998884422 16799999975
No 136
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.68 E-value=2e+02 Score=22.26 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 277 QELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
..||.||..|-...++|+.+|.+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~ 25 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRL 25 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 137
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=21.64 E-value=31 Score=32.82 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
.+++.|..+.+.|++||++|+.++.-+
T Consensus 136 rlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 136 RLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655444
No 138
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=21.43 E-value=48 Score=26.95 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCccCcccccccHHHHhHHHhhccC----CCchhhHHhhhhcccchhhHHHHHHHhcc
Q 021853 79 SLTLAQDLSNKTVDEVWKDIRQKKS----DDNQENEAQARQTSLGEMTLEDFLIKAGA 132 (306)
Q Consensus 79 SltLp~~Ls~KTVDEVWrdI~~~~~----~~~~~~~~~~rQ~TLGEMTLEdFLVrAGV 132 (306)
-+.+|..-..=|-+.||.=+.-... +...-..-.---..|=.||.|||+.||..
T Consensus 12 rl~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~ 69 (89)
T cd08534 12 RLKIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPK 69 (89)
T ss_pred hcCCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCC
Confidence 4667777777788888876653110 01000000011134678999999999974
No 139
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=21.02 E-value=65 Score=31.17 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=17.0
Q ss_pred CCCCcHHHHHHhh---------------hhcccCCC
Q 021853 47 LGSMNLDELLKSV---------------WTAENNFH 67 (306)
Q Consensus 47 fgSMNmDElLknI---------------wtaEe~q~ 67 (306)
|---||+||+..+ |++||.+.
T Consensus 160 lRG~~k~eL~a~l~~~~~~~~~~~~~~~~~~ee~~~ 195 (266)
T COG4279 160 LRGRNKEELLALLRRQLVAAEPETNDITWAAEEAEQ 195 (266)
T ss_pred ecCCCHHHHHHHHhhccccccccccccccccccccc
Confidence 3457999999999 88888765
No 140
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.95 E-value=5.4e+02 Score=23.25 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021853 279 LENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 279 LE~kv~~Le~EN~~L~~e~e 298 (306)
.+.++..|+..|..|+.+++
T Consensus 168 ~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566666667766666554
No 141
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=20.57 E-value=52 Score=26.22 Aligned_cols=16 Identities=44% Similarity=0.601 Sum_probs=13.8
Q ss_pred ccchhhHHHHHHHhcc
Q 021853 117 SLGEMTLEDFLIKAGA 132 (306)
Q Consensus 117 TLGEMTLEdFLVrAGV 132 (306)
.|=.||.|||+-|||-
T Consensus 44 ~LC~ms~eeF~~~~p~ 59 (78)
T cd08538 44 QLCSMTQEEFIEAAGI 59 (78)
T ss_pred HHHcCCHHHHHHHccc
Confidence 4678999999999975
No 142
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.26 E-value=5.9e+02 Score=23.97 Aligned_cols=45 Identities=16% Similarity=0.325 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERL 293 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L 293 (306)
+..++|+.++.++-..|...+..=++...+.+.++..++.+-.++
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i 76 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASF 76 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666665555555555555555555544443
No 143
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.17 E-value=4e+02 Score=26.42 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 257 RMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 257 R~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
.+.+.|......-++|++|+..|..++..|.+--..++..+
T Consensus 112 el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 112 ELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 45566667777778888999999988888887766665544
No 144
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=20.04 E-value=52 Score=25.36 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=13.7
Q ss_pred cccchhhHHHHHHHhcc
Q 021853 116 TSLGEMTLEDFLIKAGA 132 (306)
Q Consensus 116 ~TLGEMTLEdFLVrAGV 132 (306)
..|=.||.|||+.|++.
T Consensus 37 k~LC~ls~edF~~r~p~ 53 (68)
T cd08535 37 KALCLLTKEDFRYRSPH 53 (68)
T ss_pred HHHhcCCHHHHhhhCCC
Confidence 35678999999999763
No 145
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.03 E-value=3.6e+02 Score=19.70 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 249 KTVERRQKRMIKNRESAARSRAR---KQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~R---Kk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+...|+.+=.+.-|.+-.|-... =...+..|+.+...|..++..|..++..|.
T Consensus 5 k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 5 KRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555344333333333322 234567888888888888888888776654
No 146
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=20.01 E-value=5.5e+02 Score=21.84 Aligned_cols=47 Identities=34% Similarity=0.415 Sum_probs=26.8
Q ss_pred hhHHHHHHHHH--HhHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMI--KNRE-SAARSRARKQAYTQELE----NKVSRLEEENERLRR 295 (306)
Q Consensus 249 ~~~ekrqrR~i--KNRe-SA~rSR~RKk~y~~eLE----~kv~~Le~EN~~L~~ 295 (306)
+.++++.-|-| +|+. |....|.+++..+..+= .+++.|..|-+.|.+
T Consensus 55 ~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~k 108 (120)
T PF14931_consen 55 KRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQK 108 (120)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544 6665 56667777776655442 344555555555544
Done!