Query 021853
Match_columns 306
No_of_seqs 211 out of 798
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.6E-14 5.6E-19 105.4 7.3 51 253-303 1-51 (55)
2 2wt7_A Proto-oncogene protein 99.3 1E-11 3.4E-16 92.6 7.4 50 252-301 1-50 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 2.9E-11 1E-15 89.3 7.3 49 253-301 1-49 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 3.1E-11 1.1E-15 90.3 6.9 54 250-303 6-59 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 1.6E-10 5.6E-15 85.6 7.3 49 253-301 1-49 (62)
6 1ci6_A Transcription factor AT 98.7 1.5E-08 5.3E-13 75.5 5.7 49 253-301 2-50 (63)
7 1gu4_A CAAT/enhancer binding p 98.5 3.6E-07 1.2E-11 71.1 7.7 53 249-301 11-63 (78)
8 1gd2_E Transcription factor PA 98.5 4.2E-07 1.5E-11 69.3 7.5 47 255-301 10-56 (70)
9 1hjb_A Ccaat/enhancer binding 98.4 6E-07 2E-11 71.1 7.7 53 249-301 11-63 (87)
10 3a5t_A Transcription factor MA 98.2 1.7E-07 5.6E-12 76.9 0.2 49 247-295 31-79 (107)
11 2wt7_B Transcription factor MA 97.7 0.00012 4E-09 58.4 8.5 52 248-299 22-73 (90)
12 1skn_P DNA-binding domain of S 95.8 0.0046 1.6E-07 49.2 2.7 33 249-281 58-90 (92)
13 2oqq_A Transcription factor HY 94.5 0.039 1.3E-06 38.1 3.9 23 273-295 2-24 (42)
14 2c9l_Y EB1, zebra, BZLF1 trans 93.2 0.3 1E-05 35.7 6.8 40 257-296 5-44 (63)
15 3s9g_A Protein hexim1; cyclin 93.2 0.4 1.4E-05 38.7 8.2 30 273-302 64-93 (104)
16 2oxj_A Hybrid alpha/beta pepti 92.0 0.15 5.2E-06 33.6 3.5 30 275-304 2-31 (34)
17 3m48_A General control protein 91.0 0.19 6.5E-06 33.0 3.1 29 276-304 2-30 (33)
18 1kd8_B GABH BLL, GCN4 acid bas 88.6 0.44 1.5E-05 31.8 3.5 29 275-303 2-30 (36)
19 3c3f_A Alpha/beta peptide with 88.0 0.52 1.8E-05 31.0 3.5 29 275-303 2-30 (34)
20 2kz5_A Transcription factor NF 86.9 0.049 1.7E-06 43.3 -2.3 26 249-274 62-87 (91)
21 3c3g_A Alpha/beta peptide with 86.7 0.94 3.2E-05 29.7 4.1 28 276-303 2-29 (33)
22 1kd8_A GABH AIV, GCN4 acid bas 86.0 0.53 1.8E-05 31.4 2.7 29 275-303 2-30 (36)
23 2bni_A General control protein 84.7 0.9 3.1E-05 30.0 3.3 29 275-303 2-30 (34)
24 1uo4_A General control protein 84.3 0.96 3.3E-05 29.8 3.3 29 275-303 2-30 (34)
25 3he5_A Synzip1; heterodimeric 83.7 1.2 4.2E-05 30.8 3.8 23 275-297 4-26 (49)
26 2wq1_A General control protein 82.9 1.8 6E-05 28.4 4.1 28 276-303 2-29 (33)
27 2hy6_A General control protein 81.6 1.4 4.9E-05 29.0 3.3 29 275-303 2-30 (34)
28 1dip_A Delta-sleep-inducing pe 81.3 1.6 5.3E-05 33.6 4.0 23 274-296 22-44 (78)
29 1gu4_A CAAT/enhancer binding p 81.0 5.7 0.0002 30.4 7.1 58 248-305 14-74 (78)
30 3nmd_A CGMP dependent protein 81.0 3.1 0.00011 31.7 5.5 35 271-305 37-71 (72)
31 1am9_A Srebp-1A, protein (ster 80.3 2.2 7.6E-05 32.4 4.6 52 251-302 13-78 (82)
32 1nkp_B MAX protein, MYC proto- 80.0 2.2 7.6E-05 32.2 4.5 29 273-301 46-74 (83)
33 1hjb_A Ccaat/enhancer binding 79.5 5 0.00017 31.3 6.5 56 249-304 15-73 (87)
34 1nlw_A MAD protein, MAX dimeri 78.0 3.7 0.00013 31.3 5.2 30 272-301 45-74 (80)
35 1hlo_A Protein (transcription 75.4 1.8 6.3E-05 32.6 2.9 26 272-297 55-80 (80)
36 2oqq_A Transcription factor HY 68.9 8.2 0.00028 26.5 4.5 22 275-296 18-39 (42)
37 2r2v_A GCN4 leucine zipper; co 68.4 7.5 0.00026 25.6 4.1 28 275-302 2-29 (34)
38 1p9i_A Cortexillin I/GCN4 hybr 68.0 4.9 0.00017 25.4 3.0 24 277-300 2-25 (31)
39 1zme_C Proline utilization tra 67.1 5.4 0.00018 28.3 3.6 25 273-297 43-67 (70)
40 1dip_A Delta-sleep-inducing pe 67.1 4.6 0.00016 31.0 3.3 29 275-303 16-44 (78)
41 1zxa_A CGMP-dependent protein 66.4 10 0.00035 28.4 5.1 35 271-305 22-56 (67)
42 2wuj_A Septum site-determining 64.6 7.8 0.00027 27.6 4.0 28 274-301 27-54 (57)
43 1fmh_A General control protein 63.8 11 0.00039 24.1 4.1 25 276-300 3-27 (33)
44 2oa5_A Hypothetical protein BQ 63.0 5.1 0.00017 32.8 3.1 24 274-297 8-31 (110)
45 1jnm_A Proto-oncogene C-JUN; B 61.8 40 0.0014 24.0 8.1 31 274-304 29-59 (62)
46 1nkp_A C-MYC, MYC proto-oncoge 61.8 13 0.00046 28.5 5.2 29 271-299 49-77 (88)
47 2er8_A Regulatory protein Leu3 58.7 5.2 0.00018 28.6 2.3 22 273-294 48-69 (72)
48 2yy0_A C-MYC-binding protein; 56.2 14 0.00049 26.1 4.1 23 276-298 28-50 (53)
49 1go4_E MAD1 (mitotic arrest de 55.9 14 0.00048 29.6 4.5 26 275-300 13-38 (100)
50 2dfs_A Myosin-5A; myosin-V, in 55.6 30 0.001 37.6 8.4 29 273-301 1015-1043(1080)
51 2k8f_B Cellular tumor antigen 53.1 6.1 0.00021 26.4 1.6 23 77-99 5-27 (39)
52 1ci6_A Transcription factor AT 52.3 51 0.0018 23.7 6.7 29 275-303 31-59 (63)
53 2lz1_A Nuclear factor erythroi 50.8 0.27 9.3E-06 39.0 -6.2 25 249-273 62-86 (90)
54 1deb_A APC protein, adenomatou 50.5 18 0.00061 25.9 3.8 22 277-298 6-27 (54)
55 1uii_A Geminin; human, DNA rep 46.3 34 0.0012 26.6 5.1 24 275-298 54-77 (83)
56 3oja_A Leucine-rich immune mol 44.1 73 0.0025 30.3 8.3 34 267-300 428-461 (487)
57 2p22_D Hypothetical 12.0 kDa p 43.3 6.9 0.00024 30.3 0.8 10 50-59 1-10 (79)
58 3mq7_A Bone marrow stromal ant 43.0 65 0.0022 26.6 6.6 26 275-300 72-104 (121)
59 1nkp_B MAX protein, MYC proto- 42.4 30 0.001 25.8 4.3 26 275-300 55-80 (83)
60 2kyc_A Parvalbumin-3, parvalbu 40.3 45 0.0016 24.1 5.0 30 29-59 4-33 (108)
61 3he4_B Synzip5; heterodimeric 39.5 54 0.0019 22.3 4.7 23 272-294 8-30 (46)
62 2wg5_A General control protein 39.0 25 0.00086 27.9 3.5 30 275-304 8-37 (109)
63 2dgc_A Protein (GCN4); basic d 38.8 92 0.0031 22.4 6.3 49 249-297 9-60 (63)
64 1gd2_E Transcription factor PA 38.7 1.1E+02 0.0036 22.8 6.7 27 275-301 37-63 (70)
65 1wt6_A Myotonin-protein kinase 37.6 1.2E+02 0.0042 23.4 7.0 22 278-299 49-70 (81)
66 3a2a_A Voltage-gated hydrogen 37.6 59 0.002 23.6 4.9 21 277-297 28-48 (58)
67 2aze_A Transcription factor DP 37.4 85 0.0029 26.9 6.8 27 269-295 21-50 (155)
68 3pjs_K KCSA, voltage-gated pot 37.2 72 0.0024 26.4 6.3 31 271-301 135-165 (166)
69 2ve7_C Kinetochore protein NUF 37.1 30 0.001 31.4 4.1 52 249-300 116-174 (250)
70 2jws_A GA88; evolution, foldin 35.7 12 0.0004 27.3 0.9 11 87-97 35-45 (56)
71 3fs7_A Parvalbumin, thymic; ca 35.4 44 0.0015 24.2 4.2 29 85-128 77-105 (109)
72 3q4f_C DNA repair protein XRCC 35.4 29 0.001 30.6 3.6 22 275-296 162-183 (186)
73 1gk7_A Vimentin; intermediate 35.0 27 0.00093 23.3 2.6 19 281-299 20-38 (39)
74 3he4_B Synzip5; heterodimeric 33.9 62 0.0021 22.0 4.2 26 276-301 5-30 (46)
75 2yy0_A C-MYC-binding protein; 33.6 55 0.0019 23.0 4.2 24 277-300 22-45 (53)
76 1nkp_A C-MYC, MYC proto-oncoge 33.4 56 0.0019 25.0 4.6 25 277-301 62-86 (88)
77 3w03_C DNA repair protein XRCC 32.6 44 0.0015 29.4 4.3 22 276-297 154-175 (184)
78 2wvr_A Geminin; DNA replicatio 31.9 1.5E+02 0.0051 26.6 7.7 28 274-301 122-149 (209)
79 3eff_K Voltage-gated potassium 31.4 84 0.0029 25.0 5.6 31 271-301 108-138 (139)
80 1iq3_A Ralbp1-interacting prot 31.2 25 0.00086 27.2 2.3 31 86-131 53-83 (110)
81 3mq9_A Bone marrow stromal ant 31.1 67 0.0023 30.4 5.7 27 275-301 444-470 (471)
82 1ggw_A Protein (CDC4P); light 31.1 46 0.0016 24.9 3.8 15 46-60 50-64 (140)
83 3hnw_A Uncharacterized protein 30.7 2.2E+02 0.0075 23.5 8.2 30 268-297 97-126 (138)
84 1hwt_C Protein (heme activator 30.5 28 0.00096 25.1 2.3 23 272-294 56-78 (81)
85 2jn6_A Protein CGL2762, transp 29.3 6.3 0.00022 29.5 -1.5 24 280-303 65-88 (97)
86 1uii_A Geminin; human, DNA rep 29.3 74 0.0025 24.7 4.6 27 277-303 49-75 (83)
87 1kd8_A GABH AIV, GCN4 acid bas 29.2 84 0.0029 20.8 4.1 24 274-297 8-31 (36)
88 1a93_B MAX protein, coiled coi 28.5 1.1E+02 0.0036 20.1 4.5 21 278-298 11-31 (34)
89 1nlw_A MAD protein, MAX dimeri 27.9 69 0.0024 24.1 4.2 23 277-299 57-79 (80)
90 1gmj_A ATPase inhibitor; coile 27.8 2.1E+02 0.0073 22.1 8.1 40 259-298 34-75 (84)
91 1qjt_A EH1, epidermal growth f 27.6 20 0.00068 27.1 1.1 33 86-133 42-74 (99)
92 1sv0_A ETS DNA-binding protein 26.7 20 0.0007 27.5 1.0 53 80-132 4-60 (85)
93 2j5u_A MREC protein; bacterial 26.6 52 0.0018 29.6 3.9 25 276-300 38-62 (255)
94 5pal_A Parvalbumin; calcium-bi 26.6 25 0.00086 25.6 1.5 33 82-131 2-34 (109)
95 2dkx_A SAM pointed domain-cont 26.1 22 0.00076 27.9 1.2 52 80-132 18-74 (96)
96 3w03_C DNA repair protein XRCC 26.1 77 0.0026 27.8 4.7 28 274-301 145-172 (184)
97 3ljm_A Coil Ser L9C; de novo d 25.7 1.2E+02 0.004 19.1 4.1 24 277-300 4-27 (31)
98 3coq_A Regulatory protein GAL4 25.7 64 0.0022 23.4 3.6 21 274-294 45-65 (89)
99 3ra3_B P2F; coiled coil domain 25.3 41 0.0014 20.7 2.0 9 287-295 6-14 (28)
100 3eyy_A Putative iron uptake re 25.1 53 0.0018 26.6 3.3 37 90-136 35-71 (145)
101 2jee_A YIIU; FTSZ, septum, coi 24.5 87 0.003 24.1 4.2 11 286-296 53-63 (81)
102 1qx2_A Vitamin D-dependent cal 24.3 80 0.0027 21.0 3.7 28 87-129 43-70 (76)
103 2f33_A Calbindin; EF-hand, Ca2 24.1 1.3E+02 0.0044 24.8 5.7 35 85-130 139-173 (263)
104 1eh2_A EPS15; calcium binding, 24.0 31 0.001 26.7 1.6 31 86-131 45-75 (106)
105 2wvr_A Geminin; DNA replicatio 24.0 1E+02 0.0035 27.6 5.1 27 277-303 118-144 (209)
106 2lv7_A Calcium-binding protein 23.9 85 0.0029 23.6 4.1 47 47-128 50-96 (100)
107 2wt7_A Proto-oncogene protein 23.8 2E+02 0.0067 20.4 8.4 30 274-303 30-59 (63)
108 3s4r_A Vimentin; alpha-helix, 23.8 62 0.0021 25.1 3.3 20 281-300 23-42 (93)
109 1pyi_A Protein (pyrimidine pat 23.7 58 0.002 24.1 3.1 20 274-293 48-67 (96)
110 3mwm_A ZUR, putative metal upt 23.1 59 0.002 26.1 3.2 37 90-136 31-67 (139)
111 2kz2_A Calmodulin, CAM; TR2C, 22.9 68 0.0023 23.3 3.3 47 47-128 43-89 (94)
112 3oja_B Anopheles plasmodium-re 22.8 2.7E+02 0.0091 26.9 8.4 7 287-293 564-570 (597)
113 2l5g_A GPS2 protein, G protein 22.6 97 0.0033 20.7 3.5 22 273-294 14-35 (38)
114 3s9g_A Protein hexim1; cyclin 22.2 3.1E+02 0.01 22.0 7.2 23 279-301 63-85 (104)
115 1t6f_A Geminin; coiled-coil, c 21.8 1.4E+02 0.0047 19.8 4.1 12 282-293 22-33 (37)
116 2jv3_A ETS1 proto-oncogene; ET 21.7 31 0.0011 27.7 1.2 53 80-132 35-91 (110)
117 1a92_A Delta antigen; leucine 20.9 1E+02 0.0034 21.8 3.5 21 277-297 17-37 (50)
118 2zxx_A Geminin; coiled-coil, c 20.8 2.9E+02 0.0098 21.1 6.6 26 274-299 41-66 (79)
119 1mzb_A Ferric uptake regulatio 20.6 74 0.0025 25.3 3.3 38 89-136 35-72 (136)
120 1wlq_A Geminin; coiled-coil; 2 20.5 3E+02 0.01 21.3 7.1 27 273-299 44-70 (83)
121 2fe3_A Peroxide operon regulat 20.5 77 0.0026 25.5 3.4 37 90-136 39-75 (145)
122 1wlq_A Geminin; coiled-coil; 2 20.5 1E+02 0.0036 23.9 3.9 27 277-303 41-67 (83)
123 3li6_A Calcium-binding protein 20.4 58 0.002 21.1 2.3 29 85-128 32-60 (66)
124 2pnv_A Small conductance calci 20.3 1.4E+02 0.0047 20.3 4.1 24 276-299 18-41 (43)
125 2jee_A YIIU; FTSZ, septum, coi 20.3 1.5E+02 0.005 22.8 4.7 10 283-292 29-38 (81)
126 2op5_A Hypothetical protein; f 20.2 23 0.00079 28.1 0.2 12 86-97 26-37 (117)
127 1sxd_A GA repeat binding prote 20.0 33 0.0011 26.7 1.0 53 79-131 16-72 (91)
128 3vkg_A Dynein heavy chain, cyt 20.0 2.2E+02 0.0074 35.0 8.2 41 258-298 2019-2059(3245)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.53 E-value=1.6e-14 Score=105.41 Aligned_cols=51 Identities=37% Similarity=0.552 Sum_probs=47.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 253 krqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
|+++||++||+||++||.|||+|+++||.+|..|+.||..|+.+++.+...
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999998887643
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.27 E-value=1e-11 Score=92.56 Aligned_cols=50 Identities=28% Similarity=0.481 Sum_probs=46.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 252 ERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 252 ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
|||++|+++||+||++||.||++|+.+||.+|..|+.+|..|+.+++.++
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999998876654
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.21 E-value=2.9e-11 Score=89.26 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=45.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 253 krqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
||++|+++||+||++||.|||+|+.+||.+|..|+.+|..|..+++.++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999998877664
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.19 E-value=3.1e-11 Score=90.29 Aligned_cols=54 Identities=30% Similarity=0.348 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 250 TVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 250 ~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
..++..++..+||+||++||.||++|+.+||.+|..|+.+|..|..+++.|+..
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555569999999999999999999999999999999999999888753
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.11 E-value=1.6e-10 Score=85.56 Aligned_cols=49 Identities=29% Similarity=0.421 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 253 krqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
|+.+|..+||+||++||.||++|+.+||.+|..|+.+|..|..++..++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999998877654
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.72 E-value=1.5e-08 Score=75.46 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=39.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 253 krqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
|+.+++.+||.||+|+|.||++++.+||.++..|+.+|..|+.+++.+.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999999999999987765543
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.48 E-value=3.6e-07 Score=71.05 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+.++.-..|..||.+||++||.+++....+++.++..|+.||..|+.+++.|.
T Consensus 11 k~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555577999999999999999999999999999999999988876654
No 8
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.47 E-value=4.2e-07 Score=69.32 Aligned_cols=47 Identities=26% Similarity=0.255 Sum_probs=42.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 255 QKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 255 qrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.+|+..||.|++..|.||++|+.+||.+|..|+.+|..|..+++.|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999988888877777765
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.43 E-value=6e-07 Score=71.13 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+.+++-..|..||.++|++||.+++....+++.++..|+.||..|+.+++.|.
T Consensus 11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666678999999999999999999999999999999999998876654
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.22 E-value=1.7e-07 Score=76.94 Aligned_cols=49 Identities=31% Similarity=0.441 Sum_probs=38.5
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 247 VEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRR 295 (306)
Q Consensus 247 ~e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~ 295 (306)
.+....|.+||..|||.+|+.||.||.+.+++||.++..|..+.+.|+.
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~ 79 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLAS 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999999999999999999666555444444433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.74 E-value=0.00012 Score=58.37 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 248 EKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 248 e~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
+....|-.||-+|||..|+.||.||.....+||.++..|..+.+.|+.+++.
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999999888877777777766543
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.79 E-value=0.0046 Score=49.22 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQAYTQELEN 281 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk~y~~eLE~ 281 (306)
-...|..||..|||.+|++||+||.+.+..|+.
T Consensus 58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 456788999999999999999999998887764
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.53 E-value=0.039 Score=38.10 Aligned_cols=23 Identities=48% Similarity=0.712 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 273 QAYTQELENKVSRLEEENERLRR 295 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~ 295 (306)
|+|+.+||.++..|+..|.+|..
T Consensus 2 KaYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 57888888877777777766543
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=93.24 E-value=0.3 Score=35.66 Aligned_cols=40 Identities=33% Similarity=0.382 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 257 RMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 257 R~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e 296 (306)
..-|||.+++++|+|=|..++....-...-.+||++|+--
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l 44 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLL 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 3459999999999998888777776666677899988753
No 15
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.24 E-value=0.4 Score=38.72 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 273 QAYTQELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
-+.+.+||.+|..|..||+.|++++++.+-
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 466899999999999999999999998864
No 16
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=92.04 E-value=0.15 Score=33.63 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFFF 304 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~~ 304 (306)
.+..||.||+.|-.+|..|..+.+-++.+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 478999999999999999999988887653
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.03 E-value=0.19 Score=33.00 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021853 276 TQELENKVSRLEEENERLRRQRVWFIFFF 304 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~r~~~ 304 (306)
+..||.||+.|-.+|..|..+.+-++.+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 57899999999999999999988877653
No 18
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=88.64 E-value=0.44 Score=31.78 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
.+..||.||+.|..+|..|..+.+-++.+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47889999999999999999887777654
No 19
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=88.01 E-value=0.52 Score=31.04 Aligned_cols=29 Identities=7% Similarity=0.055 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
.+..||.||+.|-.+|..|..+.+-++.+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 47899999999999999999988877654
No 20
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=86.91 E-value=0.049 Score=43.27 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQA 274 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk~ 274 (306)
-...|..||.-|||++|+++|+||..
T Consensus 62 l~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 62 LALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45678899999999999999999854
No 21
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=86.68 E-value=0.94 Score=29.68 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 276 TQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+..||.||+.|-.+|..|..+.+-++.+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6789999999999999999988877654
No 22
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.03 E-value=0.53 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.144 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
.+..||.||+.|..+|..|..+.+-++.+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 36788999999988888888877666543
No 23
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=84.75 E-value=0.9 Score=29.96 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
.+..||.||+.|-.+|..|..+.+-++.+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 57889999999999999999988777654
No 24
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=84.35 E-value=0.96 Score=29.83 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
.+..||.||+.|-.+|..|..+..-++.+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999888777654
No 25
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.69 E-value=1.2 Score=30.75 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 275 YTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
.+..||.+|..|+.||+.|++++
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 45689999999999999998765
No 26
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=82.92 E-value=1.8 Score=28.39 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 276 TQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+..||.||+.|-.+|..|..+.+-++.+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6789999999999999999888777654
No 27
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=81.59 E-value=1.4 Score=28.98 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
.+..||.+|+.|-.+|..|..+.+-++.+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999887776653
No 28
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.32 E-value=1.6 Score=33.62 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e 296 (306)
+.+.+|+.++++||.||.-||.-
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888777753
No 29
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=80.99 E-value=5.7 Score=30.40 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=41.0
Q ss_pred chhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 021853 248 EKTVERRQKRMI---KNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFFFF 305 (306)
Q Consensus 248 e~~~ekrqrR~i---KNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~~~ 305 (306)
++-.+||.|==+ |-|+.++.--.--+..+.+|+.+-..|+.+...|.+++..++.++.
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555655333 4444444444445567889999999999999999999999988764
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.97 E-value=3.1 Score=31.68 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWFIFFFF 305 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~~~ 305 (306)
.|.+.+.+||.++...+.+..+|+.++...+.+..
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl~ 71 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRSVIR 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 45677999999999999999999999988887654
No 31
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=80.27 E-value=2.2 Score=32.45 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 251 VERRQKRMIKNRESAARSR--------------ARKQAYTQELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 251 ~ekrqrR~iKNReSA~rSR--------------~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
.||+.|-.|..+-.+-++- .+--.|+..|+.++..|++||..|+.+.+....
T Consensus 13 ~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 13 IEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555555555443331 234589999999999999999999988765543
No 32
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.01 E-value=2.2 Score=32.21 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 273 QAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
-.|+..|+.++..|+.+.+.|+++++.++
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888777777766654
No 33
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.50 E-value=5 Score=31.34 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=37.8
Q ss_pred hhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021853 249 KTVERRQKRMI---KNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWFIFFF 304 (306)
Q Consensus 249 ~~~ekrqrR~i---KNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~~ 304 (306)
+-.+||.|=-+ |-|+.++.--.--+..+++||.+-..|+.+.+.|.+++..++.++
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555333 334333333333456688999999999999999999988887665
No 34
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=78.04 E-value=3.7 Score=31.29 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 272 KQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 272 Kk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
-.+|+..|+.+...|..|++.|+++++.|+
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999998887765
No 35
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.38 E-value=1.8 Score=32.56 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 272 KQAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 272 Kk~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
--.|+..|+.++..|+.+++.|++++
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36899999999999999999998874
No 36
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.91 E-value=8.2 Score=26.53 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 275 YTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e 296 (306)
...+||++|+.|+.||.-|++-
T Consensus 18 ~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4578888888888888888764
No 37
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=68.42 E-value=7.5 Score=25.59 Aligned_cols=28 Identities=4% Similarity=-0.019 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIF 302 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~ 302 (306)
.+..||.||+.|-.+|..|..+..-++.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3678999999999999888877666554
No 38
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=68.02 E-value=4.9 Score=25.41 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 277 QELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
+.|..-+..|+.||.+|+.+.|.+
T Consensus 2 dqlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888998888776544
No 39
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.11 E-value=5.4 Score=28.27 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 273 QAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
..|++.||.++..|+.+...|+..+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999887654
No 40
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=67.07 E-value=4.6 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
-++.|..++..|++.|.+|..||.++|.+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999875
No 41
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=66.42 E-value=10 Score=28.38 Aligned_cols=35 Identities=29% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWFIFFFF 305 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~~~ 305 (306)
.|.+.+.+||..+..-..|+.+|+.++...+.++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999998887776653
No 42
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=64.63 E-value=7.8 Score=27.65 Aligned_cols=28 Identities=4% Similarity=0.029 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+|++.+...+..|..||..|+.+++.+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888889988888876553
No 43
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=63.81 E-value=11 Score=24.05 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 276 TQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
+..||++|.+.+.||-+|..+...+
T Consensus 3 vaqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578999999999998888775544
No 44
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=63.03 E-value=5.1 Score=32.77 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
.-+++|++++..|+-||..|++++
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999875
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.80 E-value=40 Score=23.97 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFIFFF 304 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~~ 304 (306)
.-+..|+.+...|..+...|+.++..|+.+.
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999988887654
No 46
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.78 E-value=13 Score=28.52 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
+--+|+..|+.+...|..+.+.|+++++.
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~ 77 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33578888887766655444444444433
No 47
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=58.74 E-value=5.2 Score=28.63 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 273 QAYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~ 294 (306)
..|+..||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999988777654
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.18 E-value=14 Score=26.10 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 276 TQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
..+|..++..|.+++++|+++++
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888887765
No 49
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.90 E-value=14 Score=29.64 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
-+..|..+++.|+.||.+|+++++.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777665544
No 50
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=55.58 E-value=30 Score=37.62 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 273 QAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+...++|+.+|+.|++||..|+.+.+.+.
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888899999999999988766554
No 51
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=53.07 E-value=6.1 Score=26.41 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.4
Q ss_pred CCCCccCcccccccHHHHhHHHh
Q 021853 77 QGSLTLAQDLSNKTVDEVWKDIR 99 (306)
Q Consensus 77 QgSltLp~~Ls~KTVDEVWrdI~ 99 (306)
|..+++-++||+.|..+.|+-+-
T Consensus 5 qsd~siepPLSQETFsdLW~LLP 27 (39)
T 2k8f_B 5 QSDPSVEPPLSQETFSDLWKLLP 27 (39)
T ss_dssp CCCSSCCCCCSCHHHHHHHHTCS
T ss_pred ccccccCCCccHHHHHHHHHhCC
Confidence 45588889999999999999653
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.29 E-value=51 Score=23.70 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
.+++|+.+...|+.+...|+.++..|+.+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777776654
No 53
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=50.82 E-value=0.27 Score=38.98 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMIKNRESAARSRARKQ 273 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RKk 273 (306)
-..-+..||.-|||.+|+++|+||.
T Consensus 62 l~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 62 LALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHHhhhhHHHHHHcchhhc
Confidence 3456778899999999999999984
No 54
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=50.55 E-value=18 Score=25.89 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 277 QELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e 298 (306)
+.|-..|+.|+.||..|+++++
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 5566778888888888888764
No 55
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.33 E-value=34 Score=26.64 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 275 YTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
.++.|+.+++.|+++|.+|+.-.+
T Consensus 54 ~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 54 EIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666665443
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.07 E-value=73 Score=30.31 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 267 RSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 267 rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
.-|.|.+.+++....+.+.|++||++|+++++.+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 3455666777777778888888888888776543
No 57
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=43.29 E-value=6.9 Score=30.26 Aligned_cols=10 Identities=50% Similarity=0.992 Sum_probs=9.5
Q ss_pred CcHHHHHHhh
Q 021853 50 MNLDELLKSV 59 (306)
Q Consensus 50 MNmDElLknI 59 (306)
||||++|++|
T Consensus 1 ~~~e~~Lr~I 10 (79)
T 2p22_D 1 MNVEELLRRI 10 (79)
T ss_dssp CHHHHHHHHS
T ss_pred CCHHHHHhcC
Confidence 8999999998
No 58
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.97 E-value=65 Score=26.62 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHh
Q 021853 275 YTQELENKVSRLEE-------ENERLRRQRVWF 300 (306)
Q Consensus 275 y~~eLE~kv~~Le~-------EN~~L~~e~e~~ 300 (306)
.+++|+.++..|.. |.++|+++++.+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 36677666655544 555566665543
No 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=42.37 E-value=30 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
....|+.++..|+.+|..|+.++..+
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999887654
No 60
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=40.34 E-value=45 Score=24.12 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=20.1
Q ss_pred ceehhhHHHhhhcCCCCCCCCCcHHHHHHhh
Q 021853 29 YNLTLDEIQSQLGDRGKPLGSMNLDELLKSV 59 (306)
Q Consensus 29 ySLTlDE~Q~~Lg~~GK~fgSMNmDElLknI 59 (306)
+.+|-+|++.-+-... .=|.++.+||++-+
T Consensus 4 ~~~~~~e~~~l~~~~d-~~g~i~~~eF~~~~ 33 (108)
T 2kyc_A 4 DILSPSDIAAALRDCQ-APDSFSPKKFFQIS 33 (108)
T ss_dssp SSSCHHHHHHHHTTSC-STTTCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcC-CCCcCCHHHHHHHH
Confidence 4566677776655444 44779999988765
No 61
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.51 E-value=54 Score=22.26 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 272 KQAYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 272 Kk~y~~eLE~kv~~Le~EN~~L~ 294 (306)
-|.|+++||.+...|+.-.+.|+
T Consensus 8 lknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHH
Confidence 36799999987777766655554
No 62
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=39.02 E-value=25 Score=27.93 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFIFFF 304 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r~~~ 304 (306)
.+..|+.+.+.|+++..+|+.+++.++..|
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356788888888888888888888887765
No 63
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.85 E-value=92 Score=22.45 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 249 KTVERRQKRMIKNRESAARSRARK---QAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 249 ~~~ekrqrR~iKNReSA~rSR~RK---k~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
+.+.||.+=.+.-|.|-.|-..+= ..-+..|+.+...|..+...|+.+.
T Consensus 9 ~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 9 PAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555553444444433333332 2456788999999999999998765
No 64
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.70 E-value=1.1e+02 Score=22.83 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
-+.+||.....|..||..|+.+++.+.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777788877777665543
No 65
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.64 E-value=1.2e+02 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 278 ELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 278 eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
+.|.+...|..|.+.|+++.+.
T Consensus 49 eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 66
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=37.60 E-value=59 Score=23.59 Aligned_cols=21 Identities=43% Similarity=0.411 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021853 277 QELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~ 297 (306)
..||..-..-++|+++|.+-+
T Consensus 28 ~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 28 QHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555554443
No 67
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=37.41 E-value=85 Score=26.92 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 021853 269 RARKQAYTQELENKVS---RLEEENERLRR 295 (306)
Q Consensus 269 R~RKk~y~~eLE~kv~---~Le~EN~~L~~ 295 (306)
=++|++|+.+|..+.. .|-+.|..+..
T Consensus 21 I~~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999997654 45556666654
No 68
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=37.23 E-value=72 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+.++....++.+++.|.++.++|+++.+..|
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~~~~r 165 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERMLDDNR 165 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455566777778888888888877766554
No 69
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=37.05 E-value=30 Score=31.38 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=31.6
Q ss_pred hhHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 249 KTVERRQKRMI-------KNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 249 ~~~ekrqrR~i-------KNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
++..+|.+|.+ +=|+....--.......+++..+++.|.+||.+++.+++.+
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~L 174 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERL 174 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777764 44555555445555555666777777777777776655443
No 70
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=35.73 E-value=12 Score=27.26 Aligned_cols=11 Identities=45% Similarity=0.767 Sum_probs=9.0
Q ss_pred ccccHHHHhHH
Q 021853 87 SNKTVDEVWKD 97 (306)
Q Consensus 87 s~KTVDEVWrd 97 (306)
-.||||+||.-
T Consensus 35 nakTVeGV~al 45 (56)
T 2jws_A 35 NAKTVEGVWTL 45 (56)
T ss_dssp TCSCHHHHHHH
T ss_pred cccccccccch
Confidence 46899999963
No 71
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=35.41 E-value=44 Score=24.25 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=17.6
Q ss_pred ccccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHH
Q 021853 85 DLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLI 128 (306)
Q Consensus 85 ~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLV 128 (306)
.++...++++|+.+-... =|.++++||+.
T Consensus 77 ~~~~~~~~~~~~~~D~~~---------------dg~i~~~EF~~ 105 (109)
T 3fs7_A 77 VLTSAETKAFLAAGDTDG---------------DGKIGVEEFQS 105 (109)
T ss_dssp CCCHHHHHHHHHHHCTTC---------------SSSBCHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCC---------------CCcCcHHHHHH
Confidence 345555666666653321 17789999974
No 72
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=35.41 E-value=29 Score=30.64 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 275 YTQELENKVSRLEEENERLRRQ 296 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e 296 (306)
.+.+|+.+...|.+||++|.++
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888775
No 73
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=35.03 E-value=27 Score=23.28 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021853 281 NKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 281 ~kv~~Le~EN~~L~~e~e~ 299 (306)
.+|..||.+|..|..+...
T Consensus 20 dkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4789999999999887654
No 74
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.91 E-value=62 Score=21.98 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 276 TQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+.+|..-+..|++.|.+|+.-.|.++
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45677777777888877776666554
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.55 E-value=55 Score=23.04 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 277 QELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
+.|..++..|+.+++.|.++++.+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554444433
No 76
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.36 E-value=56 Score=24.96 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 277 QELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
..|+.++..|+.+|..|+++++.|+
T Consensus 62 ~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 62 QKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667789999999999888775
No 77
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.57 E-value=44 Score=29.40 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 276 TQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
+.+|..++..|+++|++|+++.
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888899999999988763
No 78
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.92 E-value=1.5e+02 Score=26.56 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
..++.|+.+++.|++||.+|+.-.+...
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888888887655443
No 79
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=31.40 E-value=84 Score=24.98 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 271 RKQAYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 271 RKk~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.+++....++.+++.|.++.++|.++.+..|
T Consensus 108 ~~~~~~~~l~~~~~~l~~~l~~le~~~~~~r 138 (139)
T 3eff_K 108 SEKAAEEAYTRTTRALHERFDRLERMLDDNR 138 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344556677777888888888877655443
No 80
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=31.16 E-value=25 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=23.1
Q ss_pred cccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhc
Q 021853 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAG 131 (306)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAG 131 (306)
++...++++|+++-... -|.++++||+.--.
T Consensus 53 l~~~el~~i~~~~D~d~---------------dG~I~~~EF~~~m~ 83 (110)
T 1iq3_A 53 LSIPELSYIWELSDADC---------------DGALTLPEFCAAFH 83 (110)
T ss_dssp CSSCCHHHHHHHHCSSS---------------CSEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC---------------CCcCcHHHHHHHHH
Confidence 46778999999875432 18899999987543
No 81
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.14 E-value=67 Score=30.42 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 275 YTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 275 y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.+++||.++..|+.+.+.++.+.+.+|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777777777766666666665554
No 82
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=31.12 E-value=46 Score=24.86 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=10.4
Q ss_pred CCCCCcHHHHHHhhh
Q 021853 46 PLGSMNLDELLKSVW 60 (306)
Q Consensus 46 ~fgSMNmDElLknIw 60 (306)
.=|.++.+||+.-+-
T Consensus 50 ~~g~i~~~eF~~~~~ 64 (140)
T 1ggw_A 50 LPAEVDMEQFLQVLN 64 (140)
T ss_dssp SCSSEEHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHH
Confidence 347788888877653
No 83
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.71 E-value=2.2e+02 Score=23.45 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 268 SRARKQAYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 268 SR~RKk~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
--...+..+++++.++..|++++..|.+++
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566666666666665543
No 84
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.47 E-value=28 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 272 KQAYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 272 Kk~y~~eLE~kv~~Le~EN~~L~ 294 (306)
+..|++.||.+|..||.....|.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999987766553
No 85
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=29.33 E-value=6.3 Score=29.49 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 280 ENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 280 E~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+.++..|+.||.+|+.+++.++..
T Consensus 65 ~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 65 AEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp HHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888887777766543
No 86
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.30 E-value=74 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 277 QELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+.|...|..|++|+..|+++++.++.+
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999988864
No 87
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.23 E-value=84 Score=20.83 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~ 297 (306)
..+++|..+...|+.|-.+|+..+
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 346778888888888888887653
No 88
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=28.53 E-value=1.1e+02 Score=20.10 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021853 278 ELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 278 eLE~kv~~Le~EN~~L~~e~e 298 (306)
.....+++|+.+|..|..+.-
T Consensus 11 a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHH
Confidence 344556677777777776653
No 89
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.89 E-value=69 Score=24.07 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021853 277 QELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
..|+.+...|..+|..|+++++.
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777788899999999888764
No 90
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.79 E-value=2.1e+02 Score=22.13 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=19.2
Q ss_pred HHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 259 IKNRESAARSRARKQ--AYTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 259 iKNReSA~rSR~RKk--~y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
++.++..+....||+ .-+..-..++..|+++.+++++.+.
T Consensus 34 frqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 34 FRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443334444 3333344556666666666655443
No 91
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.62 E-value=20 Score=27.08 Aligned_cols=33 Identities=15% Similarity=0.405 Sum_probs=23.8
Q ss_pred cccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhccc
Q 021853 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAV 133 (306)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV 133 (306)
++..+++++|+++-... -|.++.+||+.--..+
T Consensus 42 l~~~~l~~i~~~~D~d~---------------dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 42 LPDLILGKIWDLADTDG---------------KGVLSKQEFFVALRLV 74 (99)
T ss_dssp SCHHHHHHHHHHHCCSS---------------SSSCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCC---------------CCcCCHHHHHHHHHHH
Confidence 35678999999875432 1889999998765444
No 92
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=26.65 E-value=20 Score=27.50 Aligned_cols=53 Identities=17% Similarity=0.023 Sum_probs=30.2
Q ss_pred CccCcccccccHHHHhHHHhhcc---C-CCchhhHHhhhhcccchhhHHHHHHHhcc
Q 021853 80 LTLAQDLSNKTVDEVWKDIRQKK---S-DDNQENEAQARQTSLGEMTLEDFLIKAGA 132 (306)
Q Consensus 80 ltLp~~Ls~KTVDEVWrdI~~~~---~-~~~~~~~~~~rQ~TLGEMTLEdFLVrAGV 132 (306)
+.||.....=|.+.|+.=|.=.. . ....-..-.---..|=.||.|||+.+|+.
T Consensus 4 ~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 4 PSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 45677777778888887665211 0 01000000011235668999999999874
No 93
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=26.65 E-value=52 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 276 TQELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
+.....++..|++||++|++.+.+.
T Consensus 38 l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 38 LAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444556788899999999876543
No 94
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=26.62 E-value=25 Score=25.62 Aligned_cols=33 Identities=12% Similarity=0.341 Sum_probs=25.1
Q ss_pred cCcccccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhc
Q 021853 82 LAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAG 131 (306)
Q Consensus 82 Lp~~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAG 131 (306)
|...++.+.|+++++.+-. =|.++++||+.-..
T Consensus 2 l~~~~s~~ei~~~~~~~d~-----------------~g~i~~~eF~~~~~ 34 (109)
T 5pal_A 2 MTKVLKADDINKAISAFKD-----------------PGTFDYKRFFHLVG 34 (109)
T ss_dssp GGGTSCHHHHHHHHHHTCS-----------------TTCCCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHhCC-----------------CCcCcHHHHHHHHh
Confidence 4566788888888888732 28899999998654
No 95
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.10 E-value=22 Score=27.86 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=27.6
Q ss_pred CccCcccccccHHHHhHHHhhccC-CCchhhHHhhhh----cccchhhHHHHHHHhcc
Q 021853 80 LTLAQDLSNKTVDEVWKDIRQKKS-DDNQENEAQARQ----TSLGEMTLEDFLIKAGA 132 (306)
Q Consensus 80 ltLp~~Ls~KTVDEVWrdI~~~~~-~~~~~~~~~~rQ----~TLGEMTLEdFLVrAGV 132 (306)
+.+|..-..=|.+.|+.=|.--.. -.-.... ..+. ..|=.||.|||+.||+.
T Consensus 18 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~-~~~f~m~G~~LC~lskedF~~~~p~ 74 (96)
T 2dkx_A 18 LNITADPMDWSPSNVQKWLLWTEHQYRLPPMG-KAFQELAGKELCAMSEEQFRQRSPL 74 (96)
T ss_dssp TTCCSCGGGCCSSTHHHHHHHHHHHTTCCCCH-HHHSSCCHHHHHHSCHHHHHHHCSS
T ss_pred cCCCCChhhCCHHHHHHHHHHHHHhcCCCCCC-cccCCCCHHHHHhCCHHHHHHHcCc
Confidence 445665566666666665442110 0000111 1233 35667999999999873
No 96
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.07 E-value=77 Score=27.83 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r 301 (306)
+++..|=.++..|+.+|.+|.++++.|+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~ 172 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLL 172 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777665
No 97
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=25.69 E-value=1.2e+02 Score=19.11 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021853 277 QELENKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~ 300 (306)
+.||.+-..|+...+.|.+++|.+
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666554
No 98
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.69 E-value=64 Score=23.42 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~ 294 (306)
.|+..||.++..||.....|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 478888888888888777664
No 99
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.34 E-value=41 Score=20.73 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 021853 287 EEENERLRR 295 (306)
Q Consensus 287 e~EN~~L~~ 295 (306)
++.|.+|+.
T Consensus 6 kqknarlkq 14 (28)
T 3ra3_B 6 KQKNARLKQ 14 (28)
T ss_dssp HHHHHHHHH
T ss_pred HHhhhHHHH
Confidence 333333333
No 100
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.06 E-value=53 Score=26.64 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=23.6
Q ss_pred cHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhcccccC
Q 021853 90 TVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNES 136 (306)
Q Consensus 90 TVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV~e~ 136 (306)
|++|||..+.+..+ .. +..+-=| ||+ ||+.+|+|..-
T Consensus 35 ta~ei~~~l~~~~~-~i-s~~TVYR-------~L~-~L~e~Glv~~i 71 (145)
T 3eyy_A 35 TPDDILGEVRKTAS-GI-NISTVYR-------TLE-LLEELGLVSHA 71 (145)
T ss_dssp CHHHHHHHHHTTCT-TC-CHHHHHH-------HHH-HHHHHTSEEEE
T ss_pred CHHHHHHHHHhhCC-CC-CHhHHHH-------HHH-HHHHCCcEEEE
Confidence 89999998865331 10 1122223 565 99999999863
No 101
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.45 E-value=87 Score=24.13 Aligned_cols=11 Identities=55% Similarity=0.809 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 021853 286 LEEENERLRRQ 296 (306)
Q Consensus 286 Le~EN~~L~~e 296 (306)
|..||++|+.+
T Consensus 53 L~~en~qLk~E 63 (81)
T 2jee_A 53 LERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 102
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=24.33 E-value=80 Score=20.99 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=20.6
Q ss_pred ccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHH
Q 021853 87 SNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIK 129 (306)
Q Consensus 87 s~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVr 129 (306)
+...++++|+.+-... -|.++.+||+.-
T Consensus 43 ~~~~~~~l~~~~D~~~---------------~g~i~~~eF~~~ 70 (76)
T 1qx2_A 43 GMSTLDEMIEEVDKNG---------------DGEVSFEEFLVM 70 (76)
T ss_dssp TSCSHHHHHHHHCTTC---------------SSEECHHHHHHH
T ss_pred CHHHHHHHHHHhCCCC---------------CCcEeHHHHHHH
Confidence 6778999999884322 178999999753
No 103
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=24.09 E-value=1.3e+02 Score=24.83 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=20.2
Q ss_pred ccccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHh
Q 021853 85 DLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKA 130 (306)
Q Consensus 85 ~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrA 130 (306)
.++...++++|..|.+.-..+ --|.+++++|+.-.
T Consensus 139 ~~~~~~~~~~~~~~~~~~d~~-----------~dg~i~~~ef~~~~ 173 (263)
T 2f33_A 139 TVDDTKLAEYTDLMLKLFDSN-----------NDGKLELTEMARLL 173 (263)
T ss_dssp CCCHHHHHHHHHHHHHHTCSS-----------SSSCBCHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcCCC-----------CCCeEcHHHHHHHH
Confidence 344555666666665432111 12789999997643
No 104
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=24.02 E-value=31 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=22.5
Q ss_pred cccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhc
Q 021853 86 LSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAG 131 (306)
Q Consensus 86 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAG 131 (306)
++..+++++|+.+-... + |.++.+||++---
T Consensus 45 l~~~el~~i~~~~D~d~--d-------------G~id~~EF~~~m~ 75 (106)
T 1eh2_A 45 LPVDILGRVWELSDIDH--D-------------GMLDRDEFAVAMF 75 (106)
T ss_dssp CCHHHHHHHHHHHCSSC--S-------------SBCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC--C-------------CcCcHHHHHHHHH
Confidence 45678999999875432 1 8899999987543
No 105
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.99 E-value=1e+02 Score=27.65 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 277 QELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+.|..+|..|++|+..|+.+++.++.+
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888899999999998888765
No 106
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=23.93 E-value=85 Score=23.56 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCCCcHHHHHHhhhhcccCCCCCCCcccccCCCCccCcccccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHH
Q 021853 47 LGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDF 126 (306)
Q Consensus 47 fgSMNmDElLknIwtaEe~q~~~~~~~LqRQgSltLp~~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdF 126 (306)
=|.++.+||-.-+-. |--.++.+.|+++++++-... + |.++.+||
T Consensus 50 ~G~I~~~El~~~l~~--------------------lg~~~~~~ei~~l~~~~D~d~--d-------------G~I~~~EF 94 (100)
T 2lv7_A 50 NGFISKQELGTAMRS--------------------LGYMPNEVELEVIIQRLDMDG--D-------------GQVDFEEF 94 (100)
T ss_dssp SSCBCHHHHHHHHHH--------------------HTCCCCTTTHHHHHHHHCSSC--S-------------SSBCHHHH
T ss_pred CCcCCHHHHHHHHHH--------------------hCCCCCHHHHHHHHHHHCCCC--C-------------CeEeHHHH
Confidence 477888886544321 112457788999999885432 1 88999999
Q ss_pred HH
Q 021853 127 LI 128 (306)
Q Consensus 127 LV 128 (306)
+.
T Consensus 95 ~~ 96 (100)
T 2lv7_A 95 VT 96 (100)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 107
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.83 E-value=2e+02 Score=20.40 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
.-++.|+.+...|..+...|+.+...++.+
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888877766543
No 108
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=23.81 E-value=62 Score=25.08 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021853 281 NKVSRLEEENERLRRQRVWF 300 (306)
Q Consensus 281 ~kv~~Le~EN~~L~~e~e~~ 300 (306)
.||..||++|..|..+.+.+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777888887777665544
No 109
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.74 E-value=58 Score=24.13 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERL 293 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L 293 (306)
.|+..||.++..||.....+
T Consensus 48 ~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 48899999999988766654
No 110
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.11 E-value=59 Score=26.14 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=23.5
Q ss_pred cHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhcccccC
Q 021853 90 TVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNES 136 (306)
Q Consensus 90 TVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV~e~ 136 (306)
|++|||..+.+..+ .. +..+-=| ||+ +|+.+|+|..-
T Consensus 31 sa~eI~~~l~~~~~-~i-s~aTVYR-------~L~-~L~e~Glv~~~ 67 (139)
T 3mwm_A 31 SAQELHDMLKHKGD-AV-GLTTVYR-------TLQ-SLADAGEVDVL 67 (139)
T ss_dssp EHHHHHHHHHHTTC-CC-CHHHHHH-------HHH-HHHHTTSSEEE
T ss_pred CHHHHHHHHHHhCC-CC-CHHHHHH-------HHH-HHHHCCCEEEE
Confidence 79999998865321 10 1122223 565 99999999864
No 111
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=22.94 E-value=68 Score=23.26 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCCCcHHHHHHhhhhcccCCCCCCCcccccCCCCccCcccccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHH
Q 021853 47 LGSMNLDELLKSVWTAENNFHSEPALSLHRQGSLTLAQDLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDF 126 (306)
Q Consensus 47 fgSMNmDElLknIwtaEe~q~~~~~~~LqRQgSltLp~~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdF 126 (306)
=|.++.+||.+-+-.. -..++...++++|+++-... -|.++++||
T Consensus 43 ~G~I~~~El~~~l~~~--------------------g~~~~~~e~~~l~~~~D~d~---------------dG~I~~~EF 87 (94)
T 2kz2_A 43 NGYISAAELRHVMTNL--------------------GEKLTDEEVDEMIREADIDG---------------DGQVNYEEF 87 (94)
T ss_dssp CSCBCHHHHHHHHHHH--------------------TCCCCHHHHHHHHHHHCTTC---------------SSSBCHHHH
T ss_pred cCcCCHHHHHHHHHHh--------------------CCCCCHHHHHHHHHHhCCCC---------------CCcEeHHHH
Confidence 3678888876654221 11345566888888774322 178999999
Q ss_pred HH
Q 021853 127 LI 128 (306)
Q Consensus 127 LV 128 (306)
+.
T Consensus 88 ~~ 89 (94)
T 2kz2_A 88 VQ 89 (94)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 112
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.81 E-value=2.7e+02 Score=26.87 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 021853 287 EEENERL 293 (306)
Q Consensus 287 e~EN~~L 293 (306)
++|+..+
T Consensus 564 ~~e~~~~ 570 (597)
T 3oja_B 564 RQETSLK 570 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 113
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.59 E-value=97 Score=20.72 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021853 273 QAYTQELENKVSRLEEENERLR 294 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~ 294 (306)
|+.+..|+.++..|++|-..|-
T Consensus 14 keQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777666554
No 114
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.22 E-value=3.1e+02 Score=22.01 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021853 279 LENKVSRLEEENERLRRQRVWFI 301 (306)
Q Consensus 279 LE~kv~~Le~EN~~L~~e~e~~r 301 (306)
.-.+|..|+.|.++|+.+|..|+
T Consensus 63 ~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776654
No 115
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.80 E-value=1.4e+02 Score=19.85 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 021853 282 KVSRLEEENERL 293 (306)
Q Consensus 282 kv~~Le~EN~~L 293 (306)
++..|++||.+|
T Consensus 22 eIa~Lk~eN~eL 33 (37)
T 1t6f_A 22 EIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhHHH
Confidence 444455555444
No 116
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=21.66 E-value=31 Score=27.72 Aligned_cols=53 Identities=19% Similarity=0.033 Sum_probs=30.2
Q ss_pred CccCcccccccHHHHhHHHhhcc---C-CCchhhHHhhhhcccchhhHHHHHHHhcc
Q 021853 80 LTLAQDLSNKTVDEVWKDIRQKK---S-DDNQENEAQARQTSLGEMTLEDFLIKAGA 132 (306)
Q Consensus 80 ltLp~~Ls~KTVDEVWrdI~~~~---~-~~~~~~~~~~rQ~TLGEMTLEdFLVrAGV 132 (306)
+.+|.....=|.+.|+.=|.--. . ....-..-.---..|=.||.|||+.+|+.
T Consensus 35 l~ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~~~~F~m~G~~LC~ls~edF~~~~p~ 91 (110)
T 2jv3_A 35 LGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPD 91 (110)
T ss_dssp TTCCSSSTTCCHHHHHHHHHHHHHHHTCCCCCTTTTCCCHHHHHHTHHHHHHHHSCH
T ss_pred hCCCCChHhCCHHHHHHHHHHHHHhcCCCCCChhcCCCCHHHHHhCCHHHHHHHcCC
Confidence 55677777778888887665210 0 00000000001134667999999999875
No 117
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.87 E-value=1e+02 Score=21.78 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021853 277 QELENKVSRLEEENERLRRQR 297 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~ 297 (306)
++||..+....+.+.+|..++
T Consensus 17 eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhccC
Confidence 566666666666665555544
No 118
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.77 E-value=2.9e+02 Score=21.13 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 274 AYTQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 274 ~y~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
.-++.+..++..|++||..|+.-.+.
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788888888877654443
No 119
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.65 E-value=74 Score=25.29 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=24.3
Q ss_pred ccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhcccccC
Q 021853 89 KTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNES 136 (306)
Q Consensus 89 KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV~e~ 136 (306)
-|++||+..+.+..+.- +..+-=| ||+ +|+.+|+|..-
T Consensus 35 ~sa~ei~~~l~~~~~~i--s~aTVYR-------~L~-~L~e~Glv~~~ 72 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDV--GLATVYR-------VLT-QFEAAGLVVRH 72 (136)
T ss_dssp BCHHHHHHHHHHTTCCC--CHHHHHH-------HHH-HHHHHTSEEEE
T ss_pred CCHHHHHHHHHhhCCCC--CHHHHHH-------HHH-HHHHCCcEEEE
Confidence 38999999986543111 1122223 665 99999999864
No 120
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.52 E-value=3e+02 Score=21.26 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 273 QAYTQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 273 k~y~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
..-++.++.++..|++||.+|+.-.+.
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677778888888888888765443
No 121
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.51 E-value=77 Score=25.54 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=23.8
Q ss_pred cHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHHHhcccccC
Q 021853 90 TVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLIKAGAVNES 136 (306)
Q Consensus 90 TVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLVrAGVV~e~ 136 (306)
|++|||..+.+..+.- +..+-=| ||+ +|+.+|+|..-
T Consensus 39 sa~ei~~~l~~~~~~i--s~aTVYR-------~L~-~L~e~Glv~~~ 75 (145)
T 2fe3_A 39 TADDIYKALEGKFPNM--SVATVYN-------NLR-VFRESGLVKEL 75 (145)
T ss_dssp CHHHHHHHHGGGCTTC--CHHHHHH-------HHH-HHHHTTSEEEE
T ss_pred CHHHHHHHHHHhCCCC--ChhhHHH-------HHH-HHHHCCCEEEE
Confidence 8999999986543111 1122222 565 99999999864
No 122
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.45 E-value=1e+02 Score=23.86 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021853 277 QELENKVSRLEEENERLRRQRVWFIFF 303 (306)
Q Consensus 277 ~eLE~kv~~Le~EN~~L~~e~e~~r~~ 303 (306)
+.|...+..+.+|...|+.+++.++.+
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888888898888887754
No 123
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=20.45 E-value=58 Score=21.13 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=19.4
Q ss_pred ccccccHHHHhHHHhhccCCCchhhHHhhhhcccchhhHHHHHH
Q 021853 85 DLSNKTVDEVWKDIRQKKSDDNQENEAQARQTSLGEMTLEDFLI 128 (306)
Q Consensus 85 ~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~rQ~TLGEMTLEdFLV 128 (306)
.++...++++|+.+-... + |.++.+||+.
T Consensus 32 ~~~~~~~~~~~~~~D~~~--~-------------g~i~~~ef~~ 60 (66)
T 3li6_A 32 IKNEQLLQLIFKSIDADG--N-------------GEIDQNEFAK 60 (66)
T ss_dssp HHHHHHHHHHHHHHCTTC--S-------------SSCCHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCC--C-------------CCCCHHHHHH
Confidence 345556777777774432 1 7899999975
No 124
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.29 E-value=1.4e+02 Score=20.33 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 276 TQELENKVSRLEEENERLRRQRVW 299 (306)
Q Consensus 276 ~~eLE~kv~~Le~EN~~L~~e~e~ 299 (306)
-++||+++..||.....|...++.
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367888888888777777766554
No 125
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.27 E-value=1.5e+02 Score=22.85 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 021853 283 VSRLEEENER 292 (306)
Q Consensus 283 v~~Le~EN~~ 292 (306)
++.|+++|..
T Consensus 29 ieELKekN~~ 38 (81)
T 2jee_A 29 IEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 126
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=20.21 E-value=23 Score=28.12 Aligned_cols=12 Identities=50% Similarity=0.927 Sum_probs=9.4
Q ss_pred cccccHHHHhHH
Q 021853 86 LSNKTVDEVWKD 97 (306)
Q Consensus 86 Ls~KTVDEVWrd 97 (306)
|--|..||||++
T Consensus 26 lflksldevwse 37 (117)
T 2op5_A 26 LFLKSLDEVWSE 37 (117)
T ss_dssp HHHTTHHHHSCH
T ss_pred HHHHHHHHHHHH
Confidence 445789999985
No 127
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=20.04 E-value=33 Score=26.66 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=30.7
Q ss_pred CCccCcccccccHHHHhHHHhhc---cC-CCchhhHHhhhhcccchhhHHHHHHHhc
Q 021853 79 SLTLAQDLSNKTVDEVWKDIRQK---KS-DDNQENEAQARQTSLGEMTLEDFLIKAG 131 (306)
Q Consensus 79 SltLp~~Ls~KTVDEVWrdI~~~---~~-~~~~~~~~~~rQ~TLGEMTLEdFLVrAG 131 (306)
.+.+|.....=|.+.|+.=|.-- -. ....-..-.---..|=.||.|||+.+++
T Consensus 16 rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~f~m~G~~LC~ls~edF~~~~p 72 (91)
T 1sxd_A 16 RLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVP 72 (91)
T ss_dssp TTTCCSSGGGCCHHHHHHHHHHHHHHTTCCCSCSGGGCSCHHHHHHSCHHHHHHHCT
T ss_pred HhCCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHCC
Confidence 46778888888888888765521 10 0100000001113466799999999985
No 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.00 E-value=2.2e+02 Score=34.96 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=24.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021853 258 MIKNRESAARSRARKQAYTQELENKVSRLEEENERLRRQRV 298 (306)
Q Consensus 258 ~iKNReSA~rSR~RKk~y~~eLE~kv~~Le~EN~~L~~e~e 298 (306)
+.++-..|...=+.+++-+.+||.+++.|+++-+++.++.+
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~ 2059 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE 2059 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556667777777777777776665554443
Done!