Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>021856
MAVETETPSSAGPASSSSSSTTSHQQSSTTSSTTSHQPSSTTSPPEPSLKQPQVPASSGF
PAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPYSGIPSNTLIPLTYN
VPTTRPTTQAGPAGSEHGQAGQEQQQAARQRQVVVRRFQIAFHLDLMLILKLAAVIFVFN
QDGSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSMQRAAQPPRPAVRAENVPAAARQG
NDVAEGQAGAENENQLPNDGNQAAGNENVVDPGANGGNQWWGIVKEIQMIVFGFITSLLP
GFHNID

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021856
        (306 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2123889 - symbol:AT4G29960 "AT4G29960" species...   545  1.3e-52   1


>TAIR|locus:2123889 [details] [associations]
            symbol:AT4G29960 "AT4G29960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            GO:GO:0005886 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL050352
            EMBL:AL161575 UniGene:At.31873 UniGene:At.20316 EMBL:AY099699
            EMBL:AY084781 EMBL:AY128895 IPI:IPI00528865 PIR:T08557
            RefSeq:NP_567837.1 PaxDb:Q9SZR6 PRIDE:Q9SZR6
            EnsemblPlants:AT4G29960.1 GeneID:829119 KEGG:ath:AT4G29960
            TAIR:At4g29960 eggNOG:NOG325580 HOGENOM:HOG000241010
            InParanoid:Q9SZR6 OMA:RRFQIAF PhylomeDB:Q9SZR6
            ProtClustDB:CLSN2689680 Genevestigator:Q9SZR6 Uniprot:Q9SZR6
        Length = 291

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 133/270 (49%), Positives = 155/270 (57%)

Query:    51 QPQVPASS-GFPAFGNGEGGMLPVMYPVALPGLYHLENQQQSNNRGAGIYAVPVHPY--- 106
             +PQ PASS GF A+ NG+  M PV YP  +PG   ++ ++Q N RGAGIYAVPVH +   
Sbjct:    28 KPQDPASSSGFRAYPNGDSPMYPVFYPGLVPGSNPVQYEEQMN-RGAGIYAVPVHQFGGH 86

Query:   107 -SGIPSNTLIPLTYNVPTTRPTTQAGPAGSEHGXXXXXXXXX--XXXXXXXXXXXXIAFH 163
              +G+PSN LIPLTYNVPTTRP  +A   G                           IAF 
Sbjct:    87 VAGLPSNYLIPLTYNVPTTRPNNEAETGGENQAQAGQGQQQQLPANQRHVVERRFQIAFQ 146

Query:   164 LDLMLILKLAAVIFVFNQDGSXXXXXXXXXXXXXXXXXQTGALTPLLRWLSQSMXXXXXX 223
             LDL LILKLAAVIF+FNQDGS                 QTGAL P +RWLSQ M      
Sbjct:   147 LDLFLILKLAAVIFLFNQDGSRQRLAVLVIFATIIYLYQTGALAPFVRWLSQGMHRAAVP 206

Query:   224 XXX----XXXXENVPAAARQGND--VAEGQAG-AENENQLPNDGNQAAGNENVVDPGANG 276
                        +N PAAA   N+  V EG+   A+N N+   + N+   NENV D G N 
Sbjct:   207 PARPHRPAVRADNDPAAAVPLNENAVLEGEENEADNGNRARANANE---NENV-DAG-NQ 261

Query:   277 GNQWWGIVKEIQMIVFGFITSLLPGFHNID 306
             GNQWWGIVKEIQMIVFGFITSLLPGFHNI+
Sbjct:   262 GNQWWGIVKEIQMIVFGFITSLLPGFHNIE 291


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      306       211   0.00081  112 3  11 22  0.42    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.19u 0.09s 18.28t   Elapsed:  00:00:01
  Total cpu time:  18.19u 0.09s 18.28t   Elapsed:  00:00:01
  Start:  Mon May 20 22:42:20 2013   End:  Mon May 20 22:42:21 2013

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