Query 021856
Match_columns 306
No_of_seqs 49 out of 51
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 06:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4583 Membrane-associated ER 98.5 6.6E-07 1.4E-11 87.4 9.5 43 163-205 262-305 (391)
2 PF11928 DUF3446: Domain of un 70.5 9.3 0.0002 31.3 4.7 18 55-72 66-83 (84)
3 PF13038 DUF3899: Domain of un 52.2 22 0.00048 27.8 3.8 28 189-216 10-37 (92)
4 PF13906 AA_permease_C: C-term 51.9 34 0.00075 25.2 4.5 34 160-201 12-45 (51)
5 COG1826 TatA Sec-independent p 35.9 47 0.001 26.8 3.4 33 183-217 4-36 (94)
6 PF05814 DUF843: Baculovirus p 31.8 58 0.0013 26.8 3.3 36 167-202 5-40 (83)
7 PF15215 FDC-SP: Follicular de 26.6 89 0.0019 24.8 3.4 45 39-83 13-61 (67)
8 PF14812 PBP1_TM: Transmembran 26.4 12 0.00026 30.5 -1.5 12 165-176 67-78 (81)
9 KOG4583 Membrane-associated ER 25.2 4.3E+02 0.0094 27.2 8.6 21 281-301 367-387 (391)
10 PF06933 SSP160: Special lobe- 23.3 92 0.002 32.9 3.7 9 34-42 137-145 (756)
11 COG0818 DgkA Diacylglycerol ki 22.8 1.4E+02 0.0031 26.0 4.3 53 159-214 29-84 (123)
12 PF14965 BRI3BP: Negative regu 22.0 1.8E+02 0.0039 26.9 5.0 37 168-205 110-147 (177)
13 PF04612 T2SM: Type II secreti 21.9 30 0.00065 28.9 0.0 37 180-216 9-46 (160)
14 TIGR02893 spore_yabQ spore cor 21.6 98 0.0021 26.7 3.0 38 166-203 47-84 (130)
15 PF11712 Vma12: Endoplasmic re 20.7 1.4E+02 0.003 25.5 3.7 56 159-214 78-139 (142)
16 PF09578 Spore_YabQ: Spore cor 20.6 92 0.002 24.2 2.5 40 163-202 36-75 (80)
17 PF03525 Meiotic_rec114: Meiot 20.5 53 0.0011 32.9 1.3 27 154-180 95-124 (328)
18 PF07172 GRP: Glycine rich pro 20.4 1E+02 0.0023 25.3 2.9 18 184-201 3-20 (95)
No 1
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.6e-07 Score=87.39 Aligned_cols=43 Identities=26% Similarity=0.228 Sum_probs=35.6
Q ss_pred HHH-HHHHHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHhcc
Q 021856 163 HLD-LMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQTGA 205 (306)
Q Consensus 163 ~~d-LWLiLKLa~fVf~Fsq~gSw~R~llLi~lAvlVYL~QTG~ 205 (306)
|+| ..-+.|+++|+=+++-.+|.+|++|++++|++|||||.|.
T Consensus 262 wLd~~ysf~r~aillSilyfySSf~RfllVm~aal~iYl~q~g~ 305 (391)
T KOG4583|consen 262 WLDWGYSFFRVAILLSILYFYSSFSRFLLVMGAALFIYLHQLGW 305 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 6778888877666666679999999999999999999994
No 2
>PF11928 DUF3446: Domain of unknown function (DUF3446); InterPro: IPR021849 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 80 to 99 amino acids in length. This domain is found associated with PF00096 from PFAM. This domain has a single completely conserved residue P that may be functionally important.
Probab=70.55 E-value=9.3 Score=31.32 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCccc
Q 021856 55 PASSGFPAFGNGEGGMLP 72 (306)
Q Consensus 55 ~~~~~~~~~p~~~~~~~p 72 (306)
+.|+..|.|...+.-+||
T Consensus 66 ~iYsa~P~YSs~~gdiy~ 83 (84)
T PF11928_consen 66 HIYSAPPPYSSSCGDIYP 83 (84)
T ss_pred cCcCCCCCCCCCCcccCC
Confidence 788899999887777765
No 3
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=52.22 E-value=22 Score=27.82 Aligned_cols=28 Identities=11% Similarity=0.363 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHh
Q 021856 189 SALVLLASLIYLYQTGALTPLLRWLSQS 216 (306)
Q Consensus 189 llLi~lAvlVYL~QTG~Lapl~R~l~r~ 216 (306)
+++++++.++|++|+|+|+.+..-.++-
T Consensus 10 l~lliig~~~~v~~~GfFd~~~ygfrr~ 37 (92)
T PF13038_consen 10 LILLIIGGFLFVFQSGFFDGFSYGFRRL 37 (92)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4566789999999999999987665544
No 4
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=51.88 E-value=34 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhheeeeCCCchhHHHHHHHHHHHHHHH
Q 021856 160 IAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLY 201 (306)
Q Consensus 160 vai~~dLWLiLKLa~fVf~Fsq~gSw~R~llLi~lAvlVYL~ 201 (306)
+++..++.|+.+|-.. +|-|+.+-.++++++|+.
T Consensus 12 ~si~~ni~Lm~~L~~~--------twirf~iWl~iGl~iYf~ 45 (51)
T PF13906_consen 12 LSILINIYLMAQLSAL--------TWIRFGIWLAIGLVIYFG 45 (51)
T ss_pred HHHHHHHHHHHHhhHh--------HHHHHHHHHHHHHHHHHh
Confidence 4577788888888654 688999999999999984
No 5
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=35.88 E-value=47 Score=26.78 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=26.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 021856 183 GSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSM 217 (306)
Q Consensus 183 gSw~R~llLi~lAvlVYL~QTG~Lapl~R~l~r~~ 217 (306)
-||.-|+++++++++||= +.=|-.+.|.+.+.+
T Consensus 4 ig~~elliIlvV~lllfG--pkKLP~l~r~~G~~i 36 (94)
T COG1826 4 IGWSELLIILVVALLVFG--PKKLPEAGRDLGKAI 36 (94)
T ss_pred CCHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHH
Confidence 478999988888888875 688888888877654
No 6
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=31.76 E-value=58 Score=26.84 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=28.6
Q ss_pred HHHHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHH
Q 021856 167 MLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQ 202 (306)
Q Consensus 167 WLiLKLa~fVf~Fsq~gSw~R~llLi~lAvlVYL~Q 202 (306)
-+++-|.++.|+|..+.+..-+++.+++-+++|+..
T Consensus 5 ~~~~~Li~~~fi~~k~~~~s~li~~~LilfviF~~~ 40 (83)
T PF05814_consen 5 SLFLALIVLGFIFDKNEGFSELIITLLILFVIFFCV 40 (83)
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHH
Confidence 456778899999998877788888888877777763
No 7
>PF15215 FDC-SP: Follicular dendritic cell secreted peptide
Probab=26.62 E-value=89 Score=24.82 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCccceec--ccccCCCC
Q 021856 39 SSTTSPPEPSLKQ--PQVPASSGFPAFGNGEGGMLPVMY--PVALPGLY 83 (306)
Q Consensus 39 ~~~~~~~~p~~~~--~~~~~~~~~~~~p~~~~~~~p~my--p~~~pg~~ 83 (306)
|-|||-+-+|+-. +--..|-+||.++|-+++||=.-| |.++|-..
T Consensus 13 S~SDSDe~~s~i~~~Py~yPF~~fPp~~~~~yPw~~~~f~~P~pip~s~ 61 (67)
T PF15215_consen 13 SISDSDELSSGIFVFPYPYPFRPFPPFPNQRYPWFYRYFYPPIPIPESP 61 (67)
T ss_pred ccccccccccccccCCCCCCcCCCCCCCcCCCchhhhccccccccCCCC
Confidence 3445555554322 222347889999999999988777 77776543
No 8
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=26.44 E-value=12 Score=30.48 Aligned_cols=12 Identities=42% Similarity=0.432 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhh
Q 021856 165 DLMLILKLAAVI 176 (306)
Q Consensus 165 dLWLiLKLa~fV 176 (306)
-|||+|||++++
T Consensus 67 wlwLlikl~lV~ 78 (81)
T PF14812_consen 67 WLWLLIKLFLVF 78 (81)
T ss_dssp ----TTTTHCCH
T ss_pred hHHHHHHHHHHh
Confidence 399999988764
No 9
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=25.18 E-value=4.3e+02 Score=27.17 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHhhCCC
Q 021856 281 WGIVKEIQMIVFGFITSLLPG 301 (306)
Q Consensus 281 ~G~vReIQr~VvgFLASLlPG 301 (306)
-+++-.+--+|.-|+|||+|-
T Consensus 367 ~sfiat~~sfvtTFFaSLlPe 387 (391)
T KOG4583|consen 367 PSFIATAWSFVTTFFASLLPE 387 (391)
T ss_pred hhHHHHHHHHHHHHHHHhcCC
Confidence 378888888999999999993
No 10
>PF06933 SSP160: Special lobe-specific silk protein SSP160; InterPro: IPR009701 This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species.
Probab=23.25 E-value=92 Score=32.91 Aligned_cols=9 Identities=44% Similarity=0.468 Sum_probs=3.7
Q ss_pred cccCCCCCC
Q 021856 34 TSHQPSSTT 42 (306)
Q Consensus 34 ~~~~~~~~~ 42 (306)
||..+||++
T Consensus 137 tsnstsssn 145 (756)
T PF06933_consen 137 TSNSTSSSN 145 (756)
T ss_pred cccccccCC
Confidence 334444443
No 11
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=22.80 E-value=1.4e+02 Score=26.00 Aligned_cols=53 Identities=21% Similarity=0.351 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHhhheeeeCCCchhHHHHHH---HHHHHHHHHHhcccHHHHHHHH
Q 021856 159 QIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALV---LLASLIYLYQTGALTPLLRWLS 214 (306)
Q Consensus 159 qvai~~dLWLiLKLa~fVf~Fsq~gSw~R~llLi---~lAvlVYL~QTG~Lapl~R~l~ 214 (306)
+=+|+.|+++.+-+..+.||+.- |+--|++++ ++.+++=+.+|.+ +.+++.+.
T Consensus 29 E~afR~e~~~~~~~i~~~~~l~~--~~~e~lll~~si~lvl~vEllNTAI-Ea~VD~~s 84 (123)
T COG0818 29 EAAFRQELLAALVALVLAFFLGV--SAIEWLLLILSIFLVLIVELLNTAI-EAVVDLIS 84 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcc
Confidence 44688999999999999988864 444444333 3344455667766 66666654
No 12
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=21.96 E-value=1.8e+02 Score=26.93 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=24.7
Q ss_pred HHHHHHhhheeee-CCCchhHHHHHHHHHHHHHHHHhcc
Q 021856 168 LILKLAAVIFVFN-QDGSRLRLSALVLLASLIYLYQTGA 205 (306)
Q Consensus 168 LiLKLa~fVf~Fs-q~gSw~R~llLi~lAvlVYL~QTG~ 205 (306)
+.+-++.|+|+.. ..+.-+|..+.+++-+++|+. ||.
T Consensus 110 v~lfl~~f~~Il~~~~~~~e~a~l~L~~lv~~~~l-~g~ 147 (177)
T PF14965_consen 110 VVLFLLSFVYILQKYEGPPERAALLLCLLVLVCFL-TGL 147 (177)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH-ccc
Confidence 3445556666766 477888888877766666654 666
No 13
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=21.90 E-value=30 Score=28.93 Aligned_cols=37 Identities=27% Similarity=0.130 Sum_probs=0.0
Q ss_pred eCCCchhHHHHHH-HHHHHHHHHHhcccHHHHHHHHHh
Q 021856 180 NQDGSRLRLSALV-LLASLIYLYQTGALTPLLRWLSQS 216 (306)
Q Consensus 180 sq~gSw~R~llLi-~lAvlVYL~QTG~Lapl~R~l~r~ 216 (306)
..-..++|+++++ ++++++|++-.+++.|+.+...+.
T Consensus 9 ~~ls~REr~ll~~~~~~l~~~l~~~~~~~P~~~~~~~~ 46 (160)
T PF04612_consen 9 QSLSPRERRLLLVLGVVLLLALLYLLLWQPLLERRDQL 46 (160)
T ss_dssp --------------------------------------
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678877776 567777777788999998886654
No 14
>TIGR02893 spore_yabQ spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members.
Probab=21.57 E-value=98 Score=26.70 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=33.3
Q ss_pred HHHHHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHh
Q 021856 166 LMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQT 203 (306)
Q Consensus 166 LWLiLKLa~fVf~Fsq~gSw~R~llLi~lAvlVYL~QT 203 (306)
+|++.-+.+|.+++..|..--|+.+++++++-.++|+-
T Consensus 47 FWi~~~~~vF~~L~~~N~G~lR~Y~~lg~~~G~~lY~~ 84 (130)
T TIGR02893 47 FWIVQALIVFYFLLYVNEGEIRFYVFLALLCGLAIYQA 84 (130)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 89999999999999998888999999988887777754
No 15
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=20.65 E-value=1.4e+02 Score=25.46 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHH-HhhheeeeC-----CCchhHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 021856 159 QIAFHLDLMLILKL-AAVIFVFNQ-----DGSRLRLSALVLLASLIYLYQTGALTPLLRWLS 214 (306)
Q Consensus 159 qvai~~dLWLiLKL-a~fVf~Fsq-----~gSw~R~llLi~lAvlVYL~QTG~Lapl~R~l~ 214 (306)
|+.+-+++-+.+=. ++++|++.. ..-..|.++=+++|++|.+..+.++....+-+.
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~e 139 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKVE 139 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56677775554433 344443332 344578888888999999988888777666543
No 16
>PF09578 Spore_YabQ: Spore cortex protein YabQ (Spore_YabQ); InterPro: IPR019074 This protein is predicted to span the membrane several times. It is only found in genomes of species that perform sporulation, such as Bacillus subtilis, Clostridium tetani, and other members of the Firmicutes (low-GC Gram-positive bacteria). Mutation of this sigmaE-dependent gene blocks development of the spore cortex. The length of the C-terminal region, which includes some hydrophobic regions, is variable.
Probab=20.60 E-value=92 Score=24.24 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHH
Q 021856 163 HLDLMLILKLAAVIFVFNQDGSRLRLSALVLLASLIYLYQ 202 (306)
Q Consensus 163 ~~dLWLiLKLa~fVf~Fsq~gSw~R~llLi~lAvlVYL~Q 202 (306)
.+=+|++.-+.+|++++..|..--|+.+++++++-+.+|.
T Consensus 36 DllfWl~~~~~~F~~l~~~N~G~iR~Y~~lg~~~G~~lY~ 75 (80)
T PF09578_consen 36 DLLFWLLAALIVFYFLYWTNYGEIRFYIFLGILLGMILYF 75 (80)
T ss_pred HHHHHHHHHHHHHHHHHHccceeeeHHHHHHHHHHHHHHH
Confidence 3448999999999999998888889999998877777763
No 17
>PF03525 Meiotic_rec114: Meiotic recombination protein rec114; InterPro: IPR004354 REC114 is one of 10 genes required for initiation of meiotic recombination in Saccharomyces cerevisiae []. Located on chromosome XIII, it is transcribed only in meiosis and has no detectable function in mitosis []. REC114 has been shown to possess an intron and is one of only three genes in yeast with 3' introns []. The 3' splice site utilised in REC114 is a very rare AAG sequence - only three other genes in yeast use this non- consensus sequence []. It appears that the intron is not essential for expression of REC114 and is not absolutely required for meiotic function. Nevertheless, it is conserved in evolution - two other species of yeast contain an intron at the same location in their REC114 genes []. ; GO: 0007131 reciprocal meiotic recombination
Probab=20.46 E-value=53 Score=32.89 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=19.3
Q ss_pred eeeeehHHHHHH---HHHHHHHHhhheeee
Q 021856 154 VVRRFQIAFHLD---LMLILKLAAVIFVFN 180 (306)
Q Consensus 154 vvrrfqvai~~d---LWLiLKLa~fVf~Fs 180 (306)
|+|||||+|.-+ ......|--+-|++=
T Consensus 95 vmrRFQV~F~n~~DF~r~~~~L~~LgFviK 124 (328)
T PF03525_consen 95 VMRRFQVGFNNDVDFMRAKSILTKLGFVIK 124 (328)
T ss_pred eEEEEEEecCChhhHHHHHHHHHhcceEEE
Confidence 689999998765 566666666666653
No 18
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.44 E-value=1e+02 Score=25.29 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=8.5
Q ss_pred chhHHHHHHHHHHHHHHH
Q 021856 184 SRLRLSALVLLASLIYLY 201 (306)
Q Consensus 184 Sw~R~llLi~lAvlVYL~ 201 (306)
|+.-+|+.+++|+|+++.
T Consensus 3 SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 444444444555555444
Done!