Query 021856
Match_columns 306
No_of_seqs 49 out of 51
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 10:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdc_A Diacylglycerol kinase; 20.8 96 0.0033 25.3 4.0 35 159-194 28-62 (121)
2 2imu_A Structural polyprotein 20.2 62 0.0021 23.1 2.3 25 279-303 2-26 (46)
3 1bzk_A Protein (BAND 3 anion t 20.1 61 0.0021 22.4 2.3 21 284-304 16-36 (43)
4 1bnx_A Protein (BAND 3); human 18.6 19 0.00066 24.0 -0.5 15 290-304 13-27 (34)
5 2la2_A Cecropin, papiliocin; a 14.6 72 0.0025 22.0 1.5 11 281-291 2-12 (38)
6 3ge2_A Lipoprotein, putative; 14.6 55 0.0019 27.7 1.1 8 15-22 24-31 (130)
7 1lsh_B Lipovitellin (LV-2); vi 14.2 37 0.0013 31.9 0.0 12 11-22 14-25 (319)
8 2nl9_A Fusion protein consisti 13.6 2E+02 0.0067 23.7 4.3 42 178-219 83-130 (157)
9 2ww5_A LYTC autolysin, 1,4-bet 13.1 49 0.0017 31.8 0.5 31 4-34 2-32 (468)
10 2l16_A SEC-independent protein 12.5 1E+02 0.0035 23.5 2.1 33 183-217 5-37 (78)
No 1
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=20.76 E-value=96 Score=25.30 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHhhheeeeCCCchhHHHHHHHH
Q 021856 159 QIAFHLDLMLILKLAAVIFVFNQDGSRLRLSALVLL 194 (306)
Q Consensus 159 qvai~~dLWLiLKLa~fVf~Fsq~gSw~R~llLi~l 194 (306)
+=+|+.|+++.+-+..+.||+.-+. +++.++++.+
T Consensus 28 E~~fr~~~~~~~~~i~~~~~l~~s~-~e~~~li~~i 62 (121)
T 2kdc_A 28 EAAFRQEGVAVLLAVVIACWLDVDA-ITRVLLISSV 62 (121)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCCCCC-SHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHH
Confidence 4458889999988888888886433 3444444433
No 2
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=20.20 E-value=62 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.2
Q ss_pred CchhHHHHHHHHHHHHHHhhCCCCc
Q 021856 279 QWWGIVKEIQMIVFGFITSLLPGFH 303 (306)
Q Consensus 279 ~W~G~vReIQr~VvgFLASLlPG~~ 303 (306)
.|++++|-|.++++=-+--|+|+-+
T Consensus 2 G~~Diir~irr~a~PVvsTlfP~Aa 26 (46)
T 2imu_A 2 GFKDIIRAIRRIAVPVVSTLFPPAA 26 (46)
T ss_dssp CHHHHHHHHHHHSHHHHHHHCSSTT
T ss_pred cHHHHHHHHHHhhhhhhhccCCCcc
Confidence 4789999999999999999999754
No 3
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.13 E-value=61 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhCCCCcc
Q 021856 284 VKEIQMIVFGFITSLLPGFHN 304 (306)
Q Consensus 284 vReIQr~VvgFLASLlPG~~e 304 (306)
.|-|--.+.+|+|+|+|.++.
T Consensus 16 ~~~laa~~fiyFa~l~PaIaF 36 (43)
T 1bzk_A 16 PQVLAAVIFIYFAALSPAITF 36 (43)
T ss_dssp SHHHHHHHHHHHHTSTTTTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 466777899999999999864
No 4
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=18.63 E-value=19 Score=23.96 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=13.1
Q ss_pred HHHHHHHhhCCCCcc
Q 021856 290 IVFGFITSLLPGFHN 304 (306)
Q Consensus 290 ~VvgFLASLlPG~~e 304 (306)
.+.+|+|+|+|.++.
T Consensus 13 ~~fiyFa~l~PaIaF 27 (34)
T 1bnx_A 13 VIFIYFAALSPAITF 27 (34)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998653
No 5
>2la2_A Cecropin, papiliocin; antimicrobial peptide, cecropin-like peptide, AN inflammatory activity, antimicrobial protein; NMR {Papilio xuthus}
Probab=14.63 E-value=72 Score=21.97 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=9.8
Q ss_pred hhHHHHHHHHH
Q 021856 281 WGIVKEIQMIV 291 (306)
Q Consensus 281 ~G~vReIQr~V 291 (306)
|.++||||.++
T Consensus 2 w~~FK~iE~vG 12 (38)
T 2la2_A 2 WKIFKKIEKVG 12 (38)
T ss_dssp CHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 78999999876
No 6
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Streptococcus pneumoniae}
Probab=14.63 E-value=55 Score=27.73 Aligned_cols=8 Identities=0% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 021856 15 SSSSSSTT 22 (306)
Q Consensus 15 ~~~~~~~~ 22 (306)
|+|+.+++
T Consensus 24 ssss~~~~ 31 (130)
T 3ge2_A 24 TNTANAGG 31 (130)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 7
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=14.20 E-value=37 Score=31.85 Aligned_cols=12 Identities=67% Similarity=0.675 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 021856 11 AGPASSSSSSTT 22 (306)
Q Consensus 11 ~~~~~~~~~~~~ 22 (306)
-.+|||||||..
T Consensus 14 ~~~~~~~~~~~~ 25 (319)
T 1lsh_B 14 HTPASSSSSSSS 25 (319)
T ss_dssp ------------
T ss_pred cCCccccccccc
Confidence 345666555443
No 8
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=13.57 E-value=2e+02 Score=23.65 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=26.4
Q ss_pred eeeCC-CchhHHHHHHHHHHHH--HHHHh---cccHHHHHHHHHhhhh
Q 021856 178 VFNQD-GSRLRLSALVLLASLI--YLYQT---GALTPLLRWLSQSMQR 219 (306)
Q Consensus 178 ~Fsq~-gSw~R~llLi~lAvlV--YL~QT---G~Lapl~R~l~r~~qR 219 (306)
+|.-+ -+|.|.+.|..++..+ ++..- +.+..++.|+..-+..
T Consensus 83 lF~dGi~nWGRIValf~F~~~la~~~~~~~~~~~v~~i~~~~~~~l~~ 130 (157)
T 2nl9_A 83 VFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVR 130 (157)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 34543 4899999999776543 44333 3456777777666543
No 9
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Probab=13.08 E-value=49 Score=31.78 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCCccccccccCccc
Q 021856 4 ETETPSSAGPASSSSSSTTSHQQSSTTSSTT 34 (306)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (306)
|||+-.++.+++++|+|.++.+.+.+++...
T Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (468)
T 2ww5_A 2 ETEVAKTSQDTTTASSSSEQNQSSNKTQTSA 32 (468)
T ss_dssp -------------------------------
T ss_pred CcCcCCCCCccccccccccccccCCCCcccc
Confidence 7787777777777777666665555544333
No 10
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=12.47 E-value=1e+02 Score=23.48 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=22.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 021856 183 GSRLRLSALVLLASLIYLYQTGALTPLLRWLSQSM 217 (306)
Q Consensus 183 gSw~R~llLi~lAvlVYL~QTG~Lapl~R~l~r~~ 217 (306)
-+|..|++++++|++|| -..=|-.+.|.+.+.+
T Consensus 5 ig~~ElliIlvVaLlvf--GpkkLP~l~r~lGk~i 37 (78)
T 2l16_A 5 IGIPGLILIFVIALIIF--GPSKLPEIGRAAGRTL 37 (78)
T ss_dssp SCHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhee--CccHhHHHHHHHHHHH
Confidence 36778887777776664 3466777777766554
Done!