Your job contains 1 sequence.
>021857
MAGAGIHTYHQQWPPAPAPPPPPAAAAAAPPPPPPVPYDNTNRIAHDEVRTIFITGLPDD
VKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL
HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMA
PPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEEL
RGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYPF
CCFCCS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021857
(306 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504955737 - symbol:AT3G21215 species:3702 "Ara... 553 2.1e-94 2
TAIR|locus:2060015 - symbol:AT2G42240 species:3702 "Arabi... 244 1.2e-35 2
WB|WBGene00003172 - symbol:mec-8 species:6239 "Caenorhabd... 152 1.0e-21 2
UNIPROTKB|G5ECJ4 - symbol:mec-8 "Protein MEC-8" species:6... 152 1.0e-21 2
TAIR|locus:2091526 - symbol:AT3G13700 species:3702 "Arabi... 149 1.9e-16 2
POMBASE|SPCC16C4.07 - symbol:scw1 "RNA-binding protein Sc... 180 4.6e-16 2
FB|FBgn0263995 - symbol:cpo "couch potato" species:7227 "... 159 6.9e-16 2
ZFIN|ZDB-GENE-040718-106 - symbol:rbpms2a "RNA binding pr... 185 1.8e-14 1
UNIPROTKB|Q9YGP5 - symbol:rbpms "RNA-binding protein with... 184 2.3e-14 1
ZFIN|ZDB-GENE-040426-741 - symbol:rbpms2b "RNA binding pr... 183 3.0e-14 1
MGI|MGI:1919223 - symbol:Rbpms2 "RNA binding protein with... 181 4.9e-14 1
UNIPROTKB|F1MAV3 - symbol:RBPMS "Uncharacterized protein"... 180 6.2e-14 1
UNIPROTKB|E2QU21 - symbol:RBPMS2 "Uncharacterized protein... 180 6.2e-14 1
UNIPROTKB|F1RX64 - symbol:RBPMS "Uncharacterized protein"... 180 6.2e-14 1
UNIPROTKB|Q6ZRY4 - symbol:RBPMS2 "RNA-binding protein wit... 179 7.9e-14 1
UNIPROTKB|F1N2U8 - symbol:RBPMS2 "Uncharacterized protein... 178 1.0e-13 1
UNIPROTKB|Q9W6I1 - symbol:RBPMS "RNA-binding protein with... 177 1.3e-13 1
UNIPROTKB|E2R5F7 - symbol:RBPMS "Uncharacterized protein"... 177 1.3e-13 1
UNIPROTKB|B4E3T4 - symbol:RBPMS "HCG2043421, isoform CRA_... 177 1.3e-13 1
UNIPROTKB|F5H357 - symbol:RBPMS "RNA-binding protein with... 177 1.3e-13 1
UNIPROTKB|Q93062 - symbol:RBPMS "RNA-binding protein with... 177 1.3e-13 1
MGI|MGI:1334446 - symbol:Rbpms "RNA binding protein gene ... 177 1.3e-13 1
UNIPROTKB|F1P2M9 - symbol:RBPMS2 "Uncharacterized protein... 175 2.1e-13 1
UNIPROTKB|F1S0B2 - symbol:RBPMS2 "Uncharacterized protein... 175 2.1e-13 1
POMBASE|SPCC320.07c - symbol:mde7 "RNA-binding protein Md... 150 2.5e-13 2
ASPGD|ASPL0000063387 - symbol:AN7700 species:162425 "Emer... 184 2.7e-13 1
RGD|1561222 - symbol:Rbpms2 "RNA binding protein with mul... 174 2.7e-13 1
UNIPROTKB|G5EH29 - symbol:MGCH7_ch7g848 "RNA binding prot... 182 4.3e-13 1
UNIPROTKB|F1NAP9 - symbol:RBPMS "RNA-binding protein with... 170 7.1e-13 1
UNIPROTKB|F1NZ89 - symbol:RBPMS2 "Uncharacterized protein... 170 7.1e-13 1
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 169 9.1e-13 1
UNIPROTKB|F1M7J8 - symbol:Rbpms "Protein Rbpms" species:1... 169 9.1e-13 1
UNIPROTKB|F1M9Y9 - symbol:Rbpms "Protein Rbpms" species:1... 169 9.1e-13 1
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 155 2.8e-11 1
UNIPROTKB|E1C0I4 - symbol:SNRPB2 "Uncharacterized protein... 137 1.4e-10 2
UNIPROTKB|J9NSX4 - symbol:LOC100683259 "Uncharacterized p... 131 2.6e-10 2
UNIPROTKB|G5E5Y0 - symbol:SNRPB2 "Uncharacterized protein... 131 3.2e-10 2
UNIPROTKB|E2R2A8 - symbol:SNRPB2 "Uncharacterized protein... 131 4.4e-10 2
UNIPROTKB|P08579 - symbol:SNRPB2 "U2 small nuclear ribonu... 131 4.4e-10 2
MGI|MGI:104805 - symbol:Snrpb2 "U2 small nuclear ribonucl... 131 4.4e-10 2
RGD|1310194 - symbol:Snrpb2 "small nuclear ribonucleoprot... 131 4.4e-10 2
SGD|S000005141 - symbol:WHI3 "RNA binding protein that se... 156 5.3e-09 1
SGD|S000002383 - symbol:WHI4 "Putative RNA binding protei... 149 1.1e-08 2
ZFIN|ZDB-GENE-060616-2 - symbol:snrpb2 "small nuclear rib... 128 6.3e-08 2
ZFIN|ZDB-GENE-030131-2841 - symbol:snrpa "small nuclear r... 131 2.9e-07 2
RGD|1307416 - symbol:Snrpa "small nuclear ribonucleoprote... 127 1.3e-06 2
UNIPROTKB|Q2KIR1 - symbol:SNRPA "U1 small nuclear ribonuc... 127 1.3e-06 2
UNIPROTKB|P09012 - symbol:SNRPA "U1 small nuclear ribonuc... 127 1.3e-06 2
UNIPROTKB|Q06AA4 - symbol:SNRPA "U1 small nuclear ribonuc... 127 1.3e-06 2
UNIPROTKB|F1M6Z8 - symbol:Snrpa "Protein Snrpa" species:1... 127 1.3e-06 2
MGI|MGI:1855690 - symbol:Snrpa "small nuclear ribonucleop... 127 1.4e-06 2
CGD|CAL0002334 - symbol:WHI3 species:5476 "Candida albica... 114 2.3e-06 2
FB|FBgn0003449 - symbol:snf "sans fille" species:7227 "Dr... 112 1.4e-05 2
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 112 1.5e-05 2
UNIPROTKB|B8AM21 - symbol:OsI_11177 "U2 small nuclear rib... 96 0.00056 2
UNIPROTKB|Q10MR0 - symbol:LOC_Os03g18720 "U2 small nuclea... 96 0.00056 2
TAIR|locus:2007417 - symbol:AT1G06960 species:3702 "Arabi... 106 0.00095 1
>TAIR|locus:504955737 [details] [associations]
symbol:AT3G21215 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09012 eggNOG:NOG255497
HOGENOM:HOG000242657 EMBL:AF361632 EMBL:AY143892 EMBL:AK118175
EMBL:AK226266 EMBL:AK317062 IPI:IPI00534607 RefSeq:NP_683582.2
UniGene:At.27825 ProteinModelPortal:Q9ASW4 SMR:Q9ASW4 IntAct:Q9ASW4
PaxDb:Q9ASW4 PRIDE:Q9ASW4 EnsemblPlants:AT3G21215.1 GeneID:821675
KEGG:ath:AT3G21215 TAIR:At3g21215 InParanoid:Q9ASW4 OMA:EASQVNF
PhylomeDB:Q9ASW4 ProtClustDB:CLSN2680031 Genevestigator:Q9ASW4
Uniprot:Q9ASW4
Length = 339
Score = 553 (199.7 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 113/168 (67%), Positives = 124/168 (73%)
Query: 1 MAGAGIHTYHQQWXXXXXXXXXXXXXXXXXXXXXXVPY---------DNTNRIAHDEVRT 51
MAGAGIH YHQQW + + DN NR +DE+RT
Sbjct: 1 MAGAGIHPYHQQWPPAGAPPPPAAVSSAAPPHPPPIHHHPPPPPVLVDNHNRPPYDELRT 60
Query: 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMI 111
IFI GLPDDVKEREL NLLRWLPGYEASQVN+KGEKPMGFALFSTAQ A+AAKD LQ M+
Sbjct: 61 IFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGEKPMGFALFSTAQFAMAAKDTLQHMV 120
Query: 112 FDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGY 159
FDAE+KSV+HTEMAKKNLFVKRGIV D+NAYDQSKRLRTGGD TH+ Y
Sbjct: 121 FDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLRTGGDCTHSVY 168
Score = 406 (148.0 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 75/83 (90%), Positives = 80/83 (96%)
Query: 216 NTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSAS 275
N KDNPPCNTLFIGNLGE+INEEELR L SAQPGFKQMK+LRQERHTVCFIEFEDVNSA+
Sbjct: 225 NIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSAT 284
Query: 276 SVHHNLQGAVIPSSGSVGMRIQY 298
+VHHNLQGAVIPSSGS+GMRIQY
Sbjct: 285 NVHHNLQGAVIPSSGSIGMRIQY 307
>TAIR|locus:2060015 [details] [associations]
symbol:AT2G42240 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000242657 UniGene:At.73056 EMBL:AK228665
IPI:IPI00570582 RefSeq:NP_001078040.1 ProteinModelPortal:Q0WQM7
SMR:Q0WQM7 EnsemblPlants:AT2G42240.2 GeneID:818824
KEGG:ath:AT2G42240 TAIR:At2g42240 OMA:CPTLFVA PhylomeDB:Q0WQM7
ProtClustDB:CLSN2699079 Genevestigator:Q0WQM7 Uniprot:Q0WQM7
Length = 302
Score = 244 (91.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 53/116 (45%), Positives = 69/116 (59%)
Query: 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAVAA 103
A DEVRT+F+ GLP+DVK RE+ NL R PGYE S + G KP FA+FS Q AVA
Sbjct: 45 ARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAV 104
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGY 159
AL M+FD E S LH ++AK N KR D ++ K+L++ T +G+
Sbjct: 105 MHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDD--GWESLKKLKSWNTTTESGF 158
Score = 157 (60.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 39/95 (41%), Positives = 54/95 (56%)
Query: 217 TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276
+K PC TLFI N+G + E EL +FS GF ++K+ V F++F+DV+ +S
Sbjct: 198 SKAADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSE 257
Query: 277 VHHNLQGAVIPSS--GSVGMRIQYP------FCCF 303
H LQG V+ SS G V +R+QYP F CF
Sbjct: 258 ALHTLQGTVLYSSLTGEV-LRLQYPSLLPILFLCF 291
>WB|WBGene00003172 [details] [associations]
symbol:mec-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0007638 "mechanosensory behavior"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0048644
"muscle organ morphogenesis" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031581 "hemidesmosome assembly"
evidence=IGI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002119 GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638
HSSP:P09012 GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084
PIR:T19360 RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 152 (58.6 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 39/91 (42%), Positives = 50/91 (54%)
Query: 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQV-----NYKGEKPMGFALFSTAQLAVA 102
+VRT+F++GLP D K REL L R GYE + + N K P+GF F + Q A
Sbjct: 29 QVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQD 88
Query: 103 AKDALQEMIFDAETKSVLHTEMAKKNLFVKR 133
A+ LQ + FD E VL E+AK N V R
Sbjct: 89 ARKMLQGVRFDPECAQVLRLELAKSNTKVAR 119
Score = 151 (58.2 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282
C+TLF+ NL +NE+ LRG+F A GF ++++ + V F+E+ D+ A+ +LQ
Sbjct: 227 CSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQ 286
Query: 283 GAVIPSSGSVGMRIQY 298
G I ++ G+RI+Y
Sbjct: 287 GFQITANDRGGLRIEY 302
>UNIPROTKB|G5ECJ4 [details] [associations]
symbol:mec-8 "Protein MEC-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002119
GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638 HSSP:P09012
GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084 PIR:T19360
RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 152 (58.6 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 39/91 (42%), Positives = 50/91 (54%)
Query: 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQV-----NYKGEKPMGFALFSTAQLAVA 102
+VRT+F++GLP D K REL L R GYE + + N K P+GF F + Q A
Sbjct: 29 QVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQD 88
Query: 103 AKDALQEMIFDAETKSVLHTEMAKKNLFVKR 133
A+ LQ + FD E VL E+AK N V R
Sbjct: 89 ARKMLQGVRFDPECAQVLRLELAKSNTKVAR 119
Score = 151 (58.2 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282
C+TLF+ NL +NE+ LRG+F A GF ++++ + V F+E+ D+ A+ +LQ
Sbjct: 227 CSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQ 286
Query: 283 GAVIPSSGSVGMRIQY 298
G I ++ G+RI+Y
Sbjct: 287 GFQITANDRGGLRIEY 302
>TAIR|locus:2091526 [details] [associations]
symbol:AT3G13700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001307 UniGene:At.39361
OMA:APSANGH IPI:IPI00523019 RefSeq:NP_187983.1
ProteinModelPortal:B3H4P0 SMR:B3H4P0 PRIDE:B3H4P0
EnsemblPlants:AT3G13700.1 GeneID:820579 KEGG:ath:AT3G13700
TAIR:At3g13700 eggNOG:NOG298185 HOGENOM:HOG000242657
PhylomeDB:B3H4P0 ProtClustDB:CLSN2684800 ArrayExpress:B3H4P0
Genevestigator:B3H4P0 Uniprot:B3H4P0
Length = 296
Score = 149 (57.5 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282
C+TLFI NLG + E+EL+ L S PGF +K+ + V F +FE++ A+ ++LQ
Sbjct: 222 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 281
Query: 283 GAVIPSSGSVGMRIQ 297
G ++ SS GM I+
Sbjct: 282 GNLLSSSDRGGMHIE 296
Score = 104 (41.7 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG 85
+ T+F++GLP+DVK RE+ NL R G+E+ Q+ Y G
Sbjct: 36 INTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTG 72
Score = 77 (32.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 55 TGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDA 114
TG D V + LQ L ++P + + V FA F++ + A+AA + L + FD
Sbjct: 71 TGRGDQVC-KNLQFLFFFIPIFRKAVV--------AFATFTSHRFALAAMNELNGVKFDP 121
Query: 115 ETKSVLHTEMAKKN 128
+T S LH E+A+ N
Sbjct: 122 QTGSNLHIELARSN 135
>POMBASE|SPCC16C4.07 [details] [associations]
symbol:scw1 "RNA-binding protein Scw1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0032955 "regulation of
barrier septum assembly" evidence=IGI] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPCC16C4.07 GO:GO:0005737 GO:GO:0032995 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032955 OrthoDB:EOG42592X PIR:T41097
RefSeq:NP_587917.1 ProteinModelPortal:O74452 STRING:O74452
EnsemblFungi:SPCC16C4.07.1 GeneID:2539358 KEGG:spo:SPCC16C4.07
eggNOG:NOG255497 NextBio:20800523 Uniprot:O74452
Length = 561
Score = 180 (68.4 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 216 NTKD-NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSA 274
N D NPPCNT+++GNL S +EEEL+ LFS Q G+K++ + +CF+EFE++ A
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYA 476
Query: 275 SSVHHNLQGAVIPSSGSVGMRIQY 298
NLQG + SS G+R+ +
Sbjct: 477 MEALKNLQGVCLSSSIKGGIRLSF 500
Score = 52 (23.4 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 54 ITGLPDDVKERELQNLLRW---LPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDAL 107
I LP D+ RE + + E + V+ E G A+FS+ A +A+D L
Sbjct: 114 IEDLPRDLTPREFLCTFLFATNVVSVELNPVSVDNEVAHGLAVFSSRDAAASARDTL 170
>FB|FBgn0263995 [details] [associations]
symbol:cpo "couch potato" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS;IDA] [GO:0007422 "peripheral nervous system
development" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007268 "synaptic
transmission" evidence=IMP] [GO:0042048 "olfactory behavior"
evidence=IMP] [GO:0022611 "dormancy process" evidence=IMP]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007275 GO:GO:0005634
GO:GO:0000166 GO:GO:0007268 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0042048 GO:GO:0035206 CTD:130749 EMBL:Z14311 EMBL:Z14312
EMBL:Z14974 EMBL:AY129455 EMBL:BT001569 PIR:A46230 PIR:S24761
RefSeq:NP_001014631.2 RefSeq:NP_001014632.2 RefSeq:NP_001163640.1
RefSeq:NP_001163641.1 RefSeq:NP_524844.5 RefSeq:NP_732282.5
RefSeq:NP_732283.4 RefSeq:NP_732284.4 UniGene:Dm.6154
ProteinModelPortal:Q01617 SMR:Q01617 IntAct:Q01617 MINT:MINT-335471
STRING:Q01617 PaxDb:Q01617 GeneID:45840 GeneID:8674070
KEGG:dme:Dmel_CG31243 KEGG:dme:Dmel_CG42457 FlyBase:FBgn0000363
eggNOG:NOG255204 InParanoid:Q01617 OrthoDB:EOG4H44N8 ChiTaRS:CPO
NextBio:838394 Bgee:Q01617 GermOnline:CG31243 GO:GO:0022611
Uniprot:Q01617
Length = 738
Score = 159 (61.0 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 41/101 (40%), Positives = 54/101 (53%)
Query: 39 DNTNRIAHDE-VRTIFITGLPDDVKERELQNLLRWLPGYEASQV-----NYKGEKPMGFA 92
D+ N +++E VRT+F++GLP D K REL L R GYE S + N K P+GF
Sbjct: 439 DSVNTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFV 498
Query: 93 LFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLFVKR 133
F T A AAK LQ + FD + + E AK N V +
Sbjct: 499 TFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSK 539
Score = 97 (39.2 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ 258
N PC+TLF+ NLG+ ++E EL+ +FS+ +K+L Q
Sbjct: 700 NAPCSTLFVANLGQFVSEHELKEVFSSHGNSNWLKLLHQ 738
>ZFIN|ZDB-GENE-040718-106 [details] [associations]
symbol:rbpms2a "RNA binding protein with multiple
splicing 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040718-106 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:BX296538
EMBL:CU570688 EMBL:BC076171 EMBL:BC152178 IPI:IPI00486507
RefSeq:NP_001002409.1 UniGene:Dr.82744 STRING:Q6DH13
Ensembl:ENSDART00000067514 GeneID:436682 KEGG:dre:436682 CTD:436682
InParanoid:Q6DH13 NextBio:20831125 Uniprot:Q6DH13
Length = 199
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 42/102 (41%), Positives = 58/102 (56%)
Query: 40 NTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQL 99
NT+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F +
Sbjct: 10 NTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRSG 69
Query: 100 AVAAKDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
A AAK+AL + FD E+ L E AK N K ++A N
Sbjct: 70 AEAAKNALNGIRFDPESPQTLRLEFAKANTKMAKSKLMATPN 111
>UNIPROTKB|Q9YGP5 [details] [associations]
symbol:rbpms "RNA-binding protein with multiple splicing"
species:8355 "Xenopus laevis" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=ISS]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOVERGEN:HBG069897 CTD:11030 EMBL:AF107889
EMBL:BC097507 RefSeq:NP_001081864.1 UniGene:Xl.449
ProteinModelPortal:Q9YGP5 GeneID:398092 KEGG:xla:398092
Uniprot:Q9YGP5
Length = 196
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 43/102 (42%), Positives = 56/102 (54%)
Query: 40 NTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQL 99
N N I +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F
Sbjct: 11 NNNNI-EEEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDNRAG 69
Query: 100 AVAAKDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
A AAK+AL + FD E L E AK N K ++A N
Sbjct: 70 AEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPN 111
>ZFIN|ZDB-GENE-040426-741 [details] [associations]
symbol:rbpms2b "RNA binding protein with multiple
splicing 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-741 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
GeneTree:ENSGT00500000044861 EMBL:BX663612 EMBL:CR354581
EMBL:BC048876 EMBL:BC066414 EMBL:AB080736 IPI:IPI00498043
RefSeq:NP_956553.1 UniGene:Dr.81683 STRING:Q7ZUL7
Ensembl:ENSDART00000006619 GeneID:393229 KEGG:dre:393229 CTD:393229
OMA:TDIKPRE NextBio:20814293 Uniprot:Q7ZUL7
Length = 200
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 40 NTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQL 99
N N +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F +
Sbjct: 10 NNNVSLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRSG 69
Query: 100 AVAAKDALQEMIFDAETKSVLHTEMAKKN 128
A AAK+AL + FD E L E AK N
Sbjct: 70 AEAAKNALNGVRFDPENPQTLRLEFAKAN 98
>MGI|MGI:1919223 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919223 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204 CTD:348093
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
HSSP:P09012 OMA:KLTSRQP EMBL:AK144659 EMBL:AK156633 EMBL:BC021788
IPI:IPI00121434 RefSeq:NP_082306.2 UniGene:Mm.29148
ProteinModelPortal:Q8VC52 SMR:Q8VC52 PhosphoSite:Q8VC52
PaxDb:Q8VC52 PRIDE:Q8VC52 DNASU:71973 Ensembl:ENSMUST00000055844
GeneID:71973 KEGG:mmu:71973 UCSC:uc009qdt.1
GeneTree:ENSGT00500000044861 InParanoid:Q8VC52 NextBio:335098
Bgee:Q8VC52 CleanEx:MM_RBPMS2 Genevestigator:Q8VC52 Uniprot:Q8VC52
Length = 206
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDA 106
+EVRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+A
Sbjct: 22 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNA 81
Query: 107 LQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
L + FD E L E AK N K ++A N
Sbjct: 82 LNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPN 116
>UNIPROTKB|F1MAV3 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:DAAA02060452 IPI:IPI00722097
UniGene:Bt.106824 Ensembl:ENSBTAT00000047899 Uniprot:F1MAV3
Length = 219
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/102 (40%), Positives = 55/102 (53%)
Query: 40 NTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQL 99
N + +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F +
Sbjct: 14 NEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSE 73
Query: 100 AVAAKDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
A AAK+AL + FD E L E AK N K +V N
Sbjct: 74 AEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 115
>UNIPROTKB|E2QU21 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:348093
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AAEX03016208
RefSeq:XP_853385.2 Ensembl:ENSCAFT00000027080 GeneID:610746
KEGG:cfa:610746 NextBio:20896295 Uniprot:E2QU21
Length = 214
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDA 106
+EVRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+A
Sbjct: 32 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNA 91
Query: 107 LQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
L + FD E L E AK N K ++A N
Sbjct: 92 LNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPN 126
>UNIPROTKB|F1RX64 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:CU914373 EMBL:FP236445
Ensembl:ENSSSCT00000017254 Uniprot:F1RX64
Length = 215
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/102 (40%), Positives = 55/102 (53%)
Query: 40 NTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQL 99
N + +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F +
Sbjct: 14 NEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSE 73
Query: 100 AVAAKDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
A AAK+AL + FD E L E AK N K +V N
Sbjct: 74 AEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 115
>UNIPROTKB|Q6ZRY4 [details] [associations]
symbol:RBPMS2 "RNA-binding protein with multiple splicing
2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG255204 CTD:348093 HOGENOM:HOG000017369 HOVERGEN:HBG069897
OrthoDB:EOG42RD8G EMBL:AY369207 EMBL:AK127873 IPI:IPI00238688
RefSeq:NP_919248.1 UniGene:Hs.436518 HSSP:P09012
ProteinModelPortal:Q6ZRY4 SMR:Q6ZRY4 STRING:Q6ZRY4
PhosphoSite:Q6ZRY4 DMDM:74762401 PaxDb:Q6ZRY4 PRIDE:Q6ZRY4
DNASU:348093 Ensembl:ENST00000300069 GeneID:348093 KEGG:hsa:348093
UCSC:uc002anq.3 GeneCards:GC15M065032 HGNC:HGNC:19098
neXtProt:NX_Q6ZRY4 PharmGKB:PA134871904 InParanoid:Q6ZRY4
OMA:KLTSRQP PhylomeDB:Q6ZRY4 ChiTaRS:RBPMS2 GenomeRNAi:348093
NextBio:99336 ArrayExpress:Q6ZRY4 Bgee:Q6ZRY4 CleanEx:HS_RBPMS2
Genevestigator:Q6ZRY4 Uniprot:Q6ZRY4
Length = 209
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDA 106
+EVRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+A
Sbjct: 28 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQPVGFVIFDSRAGAEAAKNA 87
Query: 107 LQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
L + FD E L E AK N K ++A N
Sbjct: 88 LNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPN 122
>UNIPROTKB|F1N2U8 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:DAAA02028733 IPI:IPI00688079
Ensembl:ENSBTAT00000014659 Uniprot:F1N2U8
Length = 203
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 40/94 (42%), Positives = 53/94 (56%)
Query: 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDAL 107
EVRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+AL
Sbjct: 23 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNAL 82
Query: 108 QEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K ++A N
Sbjct: 83 NGIRFDPENPQTLRLEFAKANTKMAKNKLMATPN 116
>UNIPROTKB|Q9W6I1 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0010862 "positive
regulation of pathway-restricted SMAD protein phosphorylation"
evidence=ISS] [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
eggNOG:NOG255204 GO:GO:0008143 EMBL:AF129933 IPI:IPI00591826
RefSeq:NP_990200.1 UniGene:Gga.2695 ProteinModelPortal:Q9W6I1
GeneID:395678 KEGG:gga:395678 CTD:348093 HOGENOM:HOG000017369
HOVERGEN:HBG069897 InParanoid:Q9W6I1 OrthoDB:EOG42RD8G
NextBio:20815750 Uniprot:Q9W6I1
Length = 200
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDA 106
+EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+A
Sbjct: 19 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKNA 78
Query: 107 LQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
L + FD E L E AK N K ++A N
Sbjct: 79 LNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPN 113
>UNIPROTKB|E2R5F7 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=IEA] [GO:0010862 "positive regulation
of pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 CTD:11030 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AAEX03010423 EMBL:AAEX03010424
RefSeq:XP_532815.3 ProteinModelPortal:E2R5F7 PRIDE:E2R5F7
Ensembl:ENSCAFT00000010500 GeneID:475599 KEGG:cfa:475599
NextBio:20851407 Uniprot:E2R5F7
Length = 219
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 40/98 (40%), Positives = 54/98 (55%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
K+AL + FD E L E AK N K +V N
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 115
>UNIPROTKB|B4E3T4 [details] [associations]
symbol:RBPMS "HCG2043421, isoform CRA_c" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000017369 HOVERGEN:HBG069897 UniGene:Hs.334587
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 EMBL:AK304858 IPI:IPI00908913 SMR:B4E3T4
STRING:B4E3T4 Ensembl:ENST00000517860 UCSC:uc011lba.1
Uniprot:B4E3T4
Length = 224
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 40/98 (40%), Positives = 54/98 (55%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
K+AL + FD E L E AK N K +V N
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 115
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 40/98 (40%), Positives = 54/98 (55%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
K+AL + FD E L E AK N K +V N
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 115
>UNIPROTKB|Q93062 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IDA]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0006396 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOGENOM:HOG000017369 HOVERGEN:HBG069897 EMBL:D84110
EMBL:D84107 EMBL:D84108 EMBL:D84109 EMBL:D84111 EMBL:BC003608
IPI:IPI00004045 IPI:IPI00101800 IPI:IPI00216935 IPI:IPI00216936
IPI:IPI00414709 PIR:JC6127 RefSeq:NP_001008710.1
RefSeq:NP_001008711.1 RefSeq:NP_001008712.1 RefSeq:NP_006858.1
UniGene:Hs.334587 PDB:1BNY PDBsum:1BNY ProteinModelPortal:Q93062
SMR:Q93062 IntAct:Q93062 MINT:MINT-1434067 STRING:Q93062
DMDM:13124469 PaxDb:Q93062 PRIDE:Q93062 Ensembl:ENST00000287771
Ensembl:ENST00000320203 Ensembl:ENST00000339877
Ensembl:ENST00000397323 GeneID:11030 KEGG:hsa:11030 UCSC:uc003xib.3
UCSC:uc003xic.1 UCSC:uc003xid.1 CTD:11030 GeneCards:GC08P030242
HGNC:HGNC:19097 MIM:601558 neXtProt:NX_Q93062 PharmGKB:PA134985584
eggNOG:NOG292253 OMA:PEVWGPY OrthoDB:EOG4NGGNV ChiTaRS:RBPMS
GenomeRNAi:11030 NextBio:41912 ArrayExpress:Q93062 Bgee:Q93062
CleanEx:HS_RBPMS Genevestigator:Q93062 GermOnline:ENSG00000157110
Uniprot:Q93062
Length = 196
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 40/98 (40%), Positives = 54/98 (55%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
K+AL + FD E L E AK N K +V N
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 115
>MGI|MGI:1334446 [details] [associations]
symbol:Rbpms "RNA binding protein gene with multiple
splicing" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1334446 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143 HOGENOM:HOG000017369
HOVERGEN:HBG069897 CTD:11030 eggNOG:NOG292253 OrthoDB:EOG4NGGNV
ChiTaRS:RBPMS EMBL:AF148511 EMBL:AK012265 EMBL:AK012586
EMBL:AK041118 EMBL:AC123616 EMBL:AC127551 EMBL:AC162523
EMBL:BC030397 IPI:IPI00122127 IPI:IPI00125806 IPI:IPI00132006
RefSeq:NP_001036139.1 RefSeq:NP_001036140.1 RefSeq:NP_062707.1
UniGene:Mm.323997 ProteinModelPortal:Q9WVB0 SMR:Q9WVB0
STRING:Q9WVB0 PaxDb:Q9WVB0 PRIDE:Q9WVB0 Ensembl:ENSMUST00000033994
Ensembl:ENSMUST00000033995 Ensembl:ENSMUST00000053251 GeneID:19663
KEGG:mmu:19663 NextBio:296958 CleanEx:MM_RBPMS
Genevestigator:Q9WVB0 GermOnline:ENSMUSG00000031586 Uniprot:Q9WVB0
Length = 197
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 40/98 (40%), Positives = 54/98 (55%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
K+AL + FD E L E AK N K +V N
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 115
>UNIPROTKB|F1P2M9 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00591826
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AADN02051088
Ensembl:ENSGALT00000040332 Uniprot:F1P2M9
Length = 198
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 40/94 (42%), Positives = 53/94 (56%)
Query: 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDAL 107
EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+AL
Sbjct: 18 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKNAL 77
Query: 108 QEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K ++A N
Sbjct: 78 NGIRFDPENPQTLRLEFAKANTKMAKSKLMATPN 111
>UNIPROTKB|F1S0B2 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:CU633631
Ensembl:ENSSSCT00000005024 Uniprot:F1S0B2
Length = 195
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 39/94 (41%), Positives = 53/94 (56%)
Query: 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDAL 107
+VRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+AL
Sbjct: 14 QVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNAL 73
Query: 108 QEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K ++A N
Sbjct: 74 NGIRFDPENPQTLRLEFAKANTKMAKNKLMATPN 107
>POMBASE|SPCC320.07c [details] [associations]
symbol:mde7 "RNA-binding protein Mde7" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IEP] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPCC320.07c GO:GO:0007126 GO:GO:0005737
GO:GO:0008380 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG12793
PIR:T41304 RefSeq:NP_587722.1 ProteinModelPortal:O59784
EnsemblFungi:SPCC320.07c.1 GeneID:2538704 KEGG:spo:SPCC320.07c
OrthoDB:EOG42592X NextBio:20799889 Uniprot:O59784
Length = 761
Score = 150 (57.9 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 217 TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276
T N PCNT+++GNL E++LR FS + G++++ + +CF+EFE+V A+
Sbjct: 595 TDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAK 654
Query: 277 VHHNLQGAVIPSSGSVGMRIQY 298
+QGA + G+R+ Y
Sbjct: 655 AMEKMQGAALDDKIKGGIRLSY 676
Score = 87 (35.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 28/108 (25%), Positives = 48/108 (44%)
Query: 54 ITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113
+ GLPDD +REL + + GY+ S++ + F A A+ AK+ L
Sbjct: 224 VGGLPDDFDDRELSGIFTFCEGYDFSKIESENGHRKAIVYFRNAIAALKAKNMLNAS--S 281
Query: 114 AETKSVLHTEMAKK--NLFVKRGIVADTNAYDQSKRLRTGGDYTHTGY 159
+++ ++ ++ N + K GI T S+RL D T G+
Sbjct: 282 TNNFTIIQRDVVRQQENEYHK-GIPPLTTPSLYSQRLSNNYDSTTPGF 328
>ASPGD|ASPL0000063387 [details] [associations]
symbol:AN7700 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001304 EMBL:AACD01000130
OrthoDB:EOG42592X eggNOG:NOG255497 RefSeq:XP_680969.1
ProteinModelPortal:Q5AVI0 EnsemblFungi:CADANIAT00000831
GeneID:2869448 KEGG:ani:AN7700.2 HOGENOM:HOG000174215 OMA:NSVKGGI
Uniprot:Q5AVI0
Length = 628
Score = 184 (69.8 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 35/84 (41%), Positives = 52/84 (61%)
Query: 216 NTKD-NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSA 274
N D NPPCNTL++GNL EEEL+ LFS Q G+K++ ++ +CF+EFEDV +A
Sbjct: 404 NPNDMNPPCNTLYVGNLPPDTQEEELKALFSKQRGYKRLCFRNKQNGPMCFVEFEDVRTA 463
Query: 275 SSVHHNLQGAVIPSSGSVGMRIQY 298
+ L G + +S G+R+ +
Sbjct: 464 GKTLNELYGYKLSNSIKTGIRLSF 487
>RGD|1561222 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1561222 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:KLTSRQP GeneTree:ENSGT00500000044861
IPI:IPI00766399 Ensembl:ENSRNOT00000021337 UCSC:RGD:1561222
ArrayExpress:F1M9N3 Uniprot:F1M9N3
Length = 181
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 39/93 (41%), Positives = 52/93 (55%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
VRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+AL
Sbjct: 1 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNALN 60
Query: 109 EMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K ++A N
Sbjct: 61 GIRFDPENPQTLRLEFAKANTKMAKSKLIATPN 93
>UNIPROTKB|G5EH29 [details] [associations]
symbol:MGCH7_ch7g848 "RNA binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM000230 EMBL:CM001237 RefSeq:XP_003720628.1
ProteinModelPortal:G5EH29 EnsemblFungi:MGG_03053T0 GeneID:2682606
KEGG:mgr:MGG_03053 Uniprot:G5EH29
Length = 622
Score = 182 (69.1 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 216 NTKD-NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSA 274
N D NPPCNTL++GNL +EEEL+ FS Q G+K++ ++ +CF+EFEDV+ A
Sbjct: 409 NPADQNPPCNTLYVGNLPIDTSEEELKATFSKQRGYKRLCFRTKQNGPMCFVEFEDVSFA 468
Query: 275 SSVHHNLQGAVIPSSGSVGMRIQY 298
+ H L G ++ +S G+R+ +
Sbjct: 469 TKALHELYGHMLHNSVKGGIRLSF 492
>UNIPROTKB|F1NAP9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AADN02016141 IPI:IPI00588016
Ensembl:ENSGALT00000016744 Uniprot:F1NAP9
Length = 196
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDAL 107
+VRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+AL
Sbjct: 22 QVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNAL 81
Query: 108 QEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K +V N
Sbjct: 82 NGIRFDPEIPQTLRLEFAKANTKMAKSKLVGTPN 115
>UNIPROTKB|F1NZ89 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 EMBL:AADN02051088 IPI:IPI00819063
Ensembl:ENSGALT00000003715 Uniprot:F1NZ89
Length = 180
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 39/93 (41%), Positives = 52/93 (55%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
VRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+AL
Sbjct: 1 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKNALN 60
Query: 109 EMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K ++A N
Sbjct: 61 GIRFDPENPQTLRLEFAKANTKMAKSKLMATPN 93
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 39/93 (41%), Positives = 51/93 (54%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
VRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+AL
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALN 60
Query: 109 EMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K +V N
Sbjct: 61 GIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 93
>UNIPROTKB|F1M7J8 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00767399
Ensembl:ENSRNOT00000046138 ArrayExpress:F1M7J8 Uniprot:F1M7J8
Length = 175
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 39/93 (41%), Positives = 51/93 (54%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
VRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+AL
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALN 60
Query: 109 EMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K +V N
Sbjct: 61 GIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 93
>UNIPROTKB|F1M9Y9 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0010862
"positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143
GeneTree:ENSGT00500000044861 IPI:IPI00364663
Ensembl:ENSRNOT00000017883 ArrayExpress:F1M9Y9 Uniprot:F1M9Y9
Length = 198
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 39/93 (41%), Positives = 51/93 (54%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
VRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+AL
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALN 60
Query: 109 EMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
+ FD E L E AK N K +V N
Sbjct: 61 GIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN 93
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 36/90 (40%), Positives = 48/90 (53%)
Query: 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMI 111
+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+AL +
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIR 61
Query: 112 FDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
FD E L E AK N K +V N
Sbjct: 62 FDPEIPQTLRLEFAKANTKMAKNKLVGTPN 91
>UNIPROTKB|E1C0I4 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0071013 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 KO:K11094 OMA:TTANKKP CTD:6629 EMBL:AADN02044178
IPI:IPI00603637 RefSeq:XP_419331.1 UniGene:Gga.4634
ProteinModelPortal:E1C0I4 Ensembl:ENSGALT00000031980 GeneID:421261
KEGG:gga:421261 NextBio:20824053 Uniprot:E1C0I4
Length = 226
Score = 137 (53.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
DNPP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 147 DNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENECQAGAAR 205
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 206 DALQGFKITPSHA--MKITY 223
Score = 56 (24.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 25/105 (23%), Positives = 42/105 (40%)
Query: 51 TIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMG--FALFSTAQLAVAAKD 105
TI+I + D +K+ EL+ L L G+ V K K G F +F + A
Sbjct: 8 TIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALR 67
Query: 106 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRT 150
LQ F + + + + + RG AD + K+ ++
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKS 112
>UNIPROTKB|J9NSX4 [details] [associations]
symbol:LOC100683259 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
OMA:TTANKKP EMBL:AAEX03017376 Ensembl:ENSCAFT00000021878
Uniprot:J9NSX4
Length = 230
Score = 131 (51.2 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 151 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 209
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 210 DALQGFKITPSHA--MKITY 227
Score = 63 (27.2 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 31/125 (24%), Positives = 51/125 (40%)
Query: 41 TNRIAHDEVR---TIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMG--FA 92
T+ A+ ++R TI+I + D +K+ EL+ L L G+ V K K G F
Sbjct: 5 TSLTANMDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFV 64
Query: 93 LFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRT-G 151
+F + A LQ F + + + + + RG AD + K+ + G
Sbjct: 65 IFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKSKNCG 124
Query: 152 GDYTH 156
D H
Sbjct: 125 TDCNH 129
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 131 (51.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 139 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 197
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 198 DALQGFKITPSHA--MKITY 215
Score = 60 (26.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 26/105 (24%), Positives = 42/105 (40%)
Query: 51 TIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMG--FALFSTAQLAVAAKD 105
TI+I + D +K+ EL+ L L G+ V K K G F +F + A
Sbjct: 8 TIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALR 67
Query: 106 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRT 150
LQ F + + + + + RG AD + K+ +T
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT 112
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 131 (51.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 204
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 205 DALQGFKITPSHA--MKITY 222
Score = 60 (26.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/105 (24%), Positives = 42/105 (40%)
Query: 51 TIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMG--FALFSTAQLAVAAKD 105
TI+I + D +K+ EL+ L L G+ V K K G F +F + A
Sbjct: 8 TIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALR 67
Query: 106 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRT 150
LQ F + + + + + RG AD + K+ +T
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT 112
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 131 (51.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 204
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 205 DALQGFKITPSHA--MKITY 222
Score = 60 (26.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/105 (24%), Positives = 42/105 (40%)
Query: 51 TIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMG--FALFSTAQLAVAAKD 105
TI+I + D +K+ EL+ L L G+ V K K G F +F + A
Sbjct: 8 TIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALR 67
Query: 106 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRT 150
LQ F + + + + + RG AD + K+ +T
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT 112
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 131 (51.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 204
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 205 DALQGFKITPSHA--MKITY 222
Score = 60 (26.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/105 (24%), Positives = 42/105 (40%)
Query: 51 TIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMG--FALFSTAQLAVAAKD 105
TI+I + D +K+ EL+ L L G+ V K K G F +F + A
Sbjct: 8 TIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALR 67
Query: 106 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRT 150
LQ F + + + + + RG AD + K+ +T
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT 112
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 131 (51.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 204
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 205 DALQGFKITPSHA--MKITY 222
Score = 60 (26.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/105 (24%), Positives = 42/105 (40%)
Query: 51 TIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMG--FALFSTAQLAVAAKD 105
TI+I + D +K+ EL+ L L G+ V K K G F +F + A
Sbjct: 8 TIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALR 67
Query: 106 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRT 150
LQ F + + + + + RG AD + K+ +T
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKT 112
>SGD|S000005141 [details] [associations]
symbol:WHI3 "RNA binding protein that sequesters CLN3 mRNA in
cytoplasmic foci" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;ISS;IMP;IDA] [GO:0008361
"regulation of cell size" evidence=IGI;IMP] [GO:0007124
"pseudohyphal growth" evidence=IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IMP] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005141
GO:GO:0005737 GO:GO:0051220 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006947 GO:GO:0008361 GO:GO:0003723 GO:GO:0007049
GO:GO:0001403 GO:GO:0007124 EMBL:X78898 OrthoDB:EOG42592X
eggNOG:NOG255497 EMBL:U01095 EMBL:Z71473 PIR:S50734
RefSeq:NP_014202.1 ProteinModelPortal:P34761 SMR:P34761
IntAct:P34761 MINT:MINT-4500279 STRING:P34761 PaxDb:P34761
PeptideAtlas:P34761 EnsemblFungi:YNL197C GeneID:855524
KEGG:sce:YNL197C CYGD:YNL197c GeneTree:ENSGT00530000067542
HOGENOM:HOG000074699 OMA:QRSRFSF NextBio:979559
Genevestigator:P34761 GermOnline:YNL197C Uniprot:P34761
Length = 661
Score = 156 (60.0 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 216 NTKD-NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM----KVLRQERHT---VCFIE 267
N D NPPCNTL++GNL E+ELR LFS Q GF+++ K H+ +CF+E
Sbjct: 529 NPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVE 588
Query: 268 FEDVNSASSVHHNLQGAVIPSS---GSVGMRIQY 298
F+DV+ A+ L G +P S G+R+ +
Sbjct: 589 FDDVSFATRALAELYGRQLPRSTVSSKGGIRLSF 622
>SGD|S000002383 [details] [associations]
symbol:WHI4 "Putative RNA binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008361 "regulation of cell size"
evidence=IGI] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000002383 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 GO:GO:0008361
GO:GO:0003723 OrthoDB:EOG42592X HSSP:P09012 eggNOG:NOG255497
GeneTree:ENSGT00530000067542 HOGENOM:HOG000074699 EMBL:Z74272
PIR:S67787 RefSeq:NP_010057.1 ProteinModelPortal:Q07655 SMR:Q07655
DIP:DIP-4321N IntAct:Q07655 MINT:MINT-531190 STRING:Q07655
PaxDb:Q07655 PeptideAtlas:Q07655 EnsemblFungi:YDL224C GeneID:851302
KEGG:sce:YDL224C CYGD:YDL224c NextBio:968310 Genevestigator:Q07655
GermOnline:YDL224C Uniprot:Q07655
Length = 649
Score = 149 (57.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 216 NTKD-NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKV---LRQERH-------TVC 264
N D NPPCNTL++GNL E+ELR LFS Q GF+++ + H +C
Sbjct: 524 NPADQNPPCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPIC 583
Query: 265 FIEFEDVNSASSVHHNLQGAVIP 287
F+EFEDV+ A+ L G+ +P
Sbjct: 584 FVEFEDVSFATRALAELYGSQLP 606
Score = 42 (19.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 79 SQVNYKGEKPMGFA 92
S+ N K E P GFA
Sbjct: 51 SETNIKRENPQGFA 64
>ZFIN|ZDB-GENE-060616-2 [details] [associations]
symbol:snrpb2 "small nuclear ribonucleoprotein
polypeptide B2" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060616-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HSSP:P08579
HOGENOM:HOG000217519 OMA:TTANKKP HOVERGEN:HBG000895
OrthoDB:EOG4H72CH EMBL:CU464066 EMBL:BC059527 IPI:IPI00486390
UniGene:Dr.14007 STRING:Q6PBZ6 Ensembl:ENSDART00000057601
InParanoid:Q6PBZ6 Uniprot:Q6PBZ6
Length = 229
Score = 128 (50.1 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
DNPP LF+ NL E NE L LF+ PGFK+++++ +H + F+EFE A
Sbjct: 150 DNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGKHDISFVEFESEAQAGVAK 208
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I + + M+I Y
Sbjct: 209 DALQGFRI--TATCAMKITY 226
Score = 44 (20.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 22/102 (21%), Positives = 37/102 (36%)
Query: 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPM-----GFALFSTAQLAVAAKD 105
TI+I + D +K+ EL+ L L ++ K M F +F A A
Sbjct: 17 TIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNALR 76
Query: 106 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKR 147
LQ F + + + + + RG D + K+
Sbjct: 77 QLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKK 118
>ZFIN|ZDB-GENE-030131-2841 [details] [associations]
symbol:snrpa "small nuclear ribonucleoprotein
polypeptide A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-2841 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
EMBL:CU138549 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM EMBL:CABZ01062168 EMBL:BC064308
IPI:IPI00504389 RefSeq:NP_955965.1 UniGene:Dr.76157 SMR:Q6P2T1
STRING:Q6P2T1 Ensembl:ENSDART00000012018 GeneID:324121
KEGG:dre:324121 InParanoid:Q6P2T1 NextBio:20808604 Uniprot:Q6P2T1
Length = 281
Score = 131 (51.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+EF++ A +
Sbjct: 202 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 260
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I +
Sbjct: 261 EALQGFKITQSNA--MKISF 278
Score = 39 (18.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 44 IAHDEVR---TIFITGLPDDVKERELQNLL 70
+A E+R TI+I L + +K+ EL+ L
Sbjct: 1 MAGQEMRLNHTIYINNLNEKIKKDELKKSL 30
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 127 (49.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+EF++ A +
Sbjct: 202 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 260
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I + + M+I +
Sbjct: 261 DALQGFKITQNNA--MKISF 278
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 51 TIFITGLPDDVKERELQNLL 70
TI+I L + +K+ EL+ L
Sbjct: 11 TIYINNLNEKIKKDELKKSL 30
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 127 (49.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+EF++ A +
Sbjct: 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 261
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I + + M+I +
Sbjct: 262 DALQGFKITQNNA--MKISF 279
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 51 TIFITGLPDDVKERELQNLL 70
TI+I L + +K+ EL+ L
Sbjct: 11 TIYINNLNEKIKKDELKKSL 30
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 127 (49.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+EF++ A +
Sbjct: 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 261
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I + + M+I +
Sbjct: 262 DALQGFKITQNNA--MKISF 279
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 51 TIFITGLPDDVKERELQNLL 70
TI+I L + +K+ EL+ L
Sbjct: 11 TIYINNLNEKIKKDELKKSL 30
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 127 (49.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+EF++ A +
Sbjct: 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 261
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I + + M+I +
Sbjct: 262 DALQGFKITQNNA--MKISF 279
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 51 TIFITGLPDDVKERELQNLL 70
TI+I L + +K+ EL+ L
Sbjct: 11 TIYINNLNEKIKKDELKKSL 30
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 127 (49.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+EF++ A +
Sbjct: 206 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 264
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I + + M+I +
Sbjct: 265 DALQGFKITQNNA--MKISF 282
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 51 TIFITGLPDDVKERELQNLL 70
TI+I L + +K+ EL+ L
Sbjct: 15 TIYINNLNEKIKKDELKKSL 34
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 127 (49.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+EF++ A +
Sbjct: 208 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 266
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I + + M+I +
Sbjct: 267 DALQGFKITQNNA--MKISF 284
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 51 TIFITGLPDDVKERELQNLL 70
TI+I L + +K+ EL+ L
Sbjct: 17 TIYINNLNEKIKKDELKKSL 36
>CGD|CAL0002334 [details] [associations]
symbol:WHI3 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007124 "pseudohyphal growth"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IEA] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IEA] [GO:0008361 "regulation of cell size"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002334 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:NOG255497
RefSeq:XP_720821.1 RefSeq:XP_721334.1 RefSeq:XP_888839.1
ProteinModelPortal:Q5AH44 STRING:Q5AH44 GeneID:3636991
GeneID:3637479 GeneID:3703850 KEGG:cal:CaO19.13847
KEGG:cal:CaO19.6494 KEGG:cal:CaO19_6494 Uniprot:Q5AH44
Length = 704
Score = 114 (45.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 216 NTKD-NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM 253
N D NPPCNTL++GNL E ELR LFS Q GF+++
Sbjct: 537 NPADQNPPCNTLYVGNLPPDATESELRTLFSPQKGFRRL 575
Score = 64 (27.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 263 VCFIEFEDVNSASSVHHNLQGAVIP----SSGSVGMRIQY 298
+CF+EFEDV A+ L G +P +G G+R+ +
Sbjct: 606 MCFVEFEDVAHATRALAELYGRALPRPNGGNGKGGIRLSF 645
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 112 (44.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+ PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EF +++
Sbjct: 137 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFTTELQSNAAK 195
Query: 279 HNLQG 283
LQG
Sbjct: 196 EALQG 200
Score = 41 (19.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 50 RTIFITGLPDDVKERELQNLL 70
+TI+I L + +K+ EL+ L
Sbjct: 7 QTIYINNLNEKIKKEELKKSL 27
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 112 (44.5 bits), Expect = 0.00048, P = 0.00048
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 51 TIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDALQE 109
T+F++ LP DV EREL L R++ G+ + +N +G+ PM F F Q ++ A + LQ
Sbjct: 273 TLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGKLPMCFCDFIDTQSSMFALEFLQG 332
Query: 110 MIFDA-ETKSVLHTEMAKKN 128
DA + S + E K N
Sbjct: 333 FRMDASDISSSISIEFDKAN 352
Score = 108 (43.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-RHTVCFIEFEDVNSASSVHHN 280
PC+TLF+ NL + + E EL LF GF ++++ +E + +CF +F D S+
Sbjct: 270 PCSTLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGKLPMCFCDFIDTQSSMFALEF 329
Query: 281 LQGAVIPSSG-SVGMRIQY 298
LQG + +S S + I++
Sbjct: 330 LQGFRMDASDISSSISIEF 348
Score = 55 (24.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 50 RTIFITGLPDDVKERELQNLLRWLPGY 76
R +F+ +P V +NL + LPGY
Sbjct: 10 RVLFVKDIPQRVSYDAFENLFKSLPGY 36
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 96 (38.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280
PP N LFI NL L+ LF PGF++++++ + + + F+E+ED + +
Sbjct: 155 PPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMI-EAKPGIAFVEYEDDSQSMVAMQA 213
Query: 281 LQG 283
LQG
Sbjct: 214 LQG 216
Score = 47 (21.6 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 26/93 (27%), Positives = 38/93 (40%)
Query: 50 RTIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMGFA--LFSTAQLAVAAK 104
+T+++ L + VK+ EL+ L L G V K K G A +FS A A
Sbjct: 10 QTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAF 69
Query: 105 DALQEMIFDAETKSVLHTEMAKKNLFVKRGIVA 137
LQE F + V + + L + G A
Sbjct: 70 RGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTA 102
>UNIPROTKB|Q10MR0 [details] [associations]
symbol:LOC_Os03g18720 "U2 small nuclear ribonucleoprotein
B''" species:39947 "Oryza sativa Japonica Group" [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0015030 "Cajal body" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
EMBL:DP000009 EMBL:AP008209 GO:GO:0015030 GO:GO:0000398
EMBL:CM000140 GO:GO:0017069 GO:GO:0005686 eggNOG:NOG317159
PANTHER:PTHR10501 HOGENOM:HOG000217519 ProtClustDB:CLSN2683617
KO:K11094 OMA:DIACATQ EMBL:AK103337 RefSeq:NP_001049846.1
UniGene:Os.75636 ProteinModelPortal:Q10MR0 STRING:Q10MR0
PRIDE:Q10MR0 EnsemblPlants:LOC_Os03g18720.1 GeneID:4332557
KEGG:dosa:Os03t0298800-01 KEGG:osa:4332557 Gramene:Q10MR0
Uniprot:Q10MR0
Length = 232
Score = 96 (38.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280
PP N LFI NL L+ LF PGF++++++ + + + F+E+ED + +
Sbjct: 155 PPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMI-EAKPGIAFVEYEDDSQSMVAMQA 213
Query: 281 LQG 283
LQG
Sbjct: 214 LQG 216
Score = 47 (21.6 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 26/93 (27%), Positives = 38/93 (40%)
Query: 50 RTIFITGLPDDVKERELQNLLRWLP---GYEASQVNYKGEKPMGFA--LFSTAQLAVAAK 104
+T+++ L + VK+ EL+ L L G V K K G A +FS A A
Sbjct: 10 QTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAF 69
Query: 105 DALQEMIFDAETKSVLHTEMAKKNLFVKRGIVA 137
LQE F + V + + L + G A
Sbjct: 70 RGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTA 102
>TAIR|locus:2007417 [details] [associations]
symbol:AT1G06960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 GO:GO:0000398
GO:GO:0017069 GO:GO:0005686 EMBL:AC067971 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:AY080742 EMBL:AY142487 IPI:IPI00542329
IPI:IPI00548592 IPI:IPI00846257 PIR:C86204 RefSeq:NP_001077472.1
RefSeq:NP_172177.3 RefSeq:NP_850936.1 UniGene:At.42321
ProteinModelPortal:Q8H1S6 SMR:Q8H1S6 STRING:Q8H1S6
EnsemblPlants:AT1G06960.1 GeneID:837206 KEGG:ath:AT1G06960
GeneFarm:4538 TAIR:At1g06960 InParanoid:Q8H1S6 OMA:DIACATQ
PhylomeDB:Q8H1S6 Genevestigator:Q8H1S6 Uniprot:Q8H1S6
Length = 229
Score = 106 (42.4 bits), Expect = 0.00095, P = 0.00095
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280
PP N LFI NL N L+ LF PGFK+++++ + + + F+E+ED +S
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMI-EAKPGIAFVEYEDDVQSSMAMQA 210
Query: 281 LQG-AVIPSSGSV 292
LQG + P + V
Sbjct: 211 LQGFKITPQNPMV 223
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 306 230 0.00083 113 3 11 22 0.39 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 608 (65 KB)
Total size of DFA: 191 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.66u 0.08s 18.74t Elapsed: 00:00:02
Total cpu time: 18.66u 0.08s 18.74t Elapsed: 00:00:02
Start: Mon May 20 22:43:15 2013 End: Mon May 20 22:43:17 2013