BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021857
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2U1A|A Chain A, Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20
           Structures
          Length = 88

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
           +NPP + LF+ NL E  NE  L  LF+  PGFK+++++   RH + F+EF++   A +  
Sbjct: 9   ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 67

Query: 279 HNLQGAVIPSSGSVGMRIQY 298
             LQG  I  + +  M+I +
Sbjct: 68  DALQGFKITQNNA--MKISF 85



 Score = 35.0 bits (79), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 52  IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMI 111
           +F+T LP++  E  L  L    PG++  ++   G   + F  F     A AA+DALQ   
Sbjct: 16  LFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFDNEVQAGAARDALQG-- 72

Query: 112 FDAETKSVLHTEMAKK 127
           F     + +    AKK
Sbjct: 73  FKITQNNAMKISFAKK 88


>pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
 pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
          Length = 282

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
           +NPP + LF+ NL E  NE  L  LF+  PGFK+++++   RH + F+EF++   A +  
Sbjct: 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAAR 261

Query: 279 HNLQG 283
             LQG
Sbjct: 262 DALQG 266



 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 52  IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMI 111
           +F+T LP++  E  L  L    PG++  ++   G   + F  F     A AA+DALQ   
Sbjct: 210 LFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFDNEVQAGAARDALQG-- 266

Query: 112 FDAETKSVLHTEMAKK 127
           F     + +    AKK
Sbjct: 267 FKITQNNAMKISFAKK 282


>pdb|2B0G|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
 pdb|2AYM|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
          Length = 83

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
           + PP   LF+ NL E  NE  L  LF+  PGFK+++++   RH + F+EF     +++  
Sbjct: 4   EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN-RHDIAFVEFTTELQSNAAK 62

Query: 279 HNLQGAVIPSSGSVGMRIQY 298
             LQG  I  + +  M+I +
Sbjct: 63  EALQGFKI--TPTHAMKITF 80



 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 50  RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
           + +F+T LP++  E  L  L    PG++  ++       + F  F+T   + AAK+ALQ
Sbjct: 9   QILFLTNLPEETNEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFTTELQSNAAKEALQ 66


>pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
           Rbd34 Complexed With Cucucu Rna
 pdb|2EVZ|A Chain A, Structure Of Rna Binding Domains 3 And 4 Of Polypyrimidine
           Tract Binding Protein
          Length = 229

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSA 274
           PP  TL + N+  S++EE+L+ LFS+  G  K  K  +++R  +  I+   V  A
Sbjct: 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR-KMALIQMGSVEEA 202


>pdb|1QM9|A Chain A, Nmr, Representative Structure
          Length = 198

 Score = 32.7 bits (73), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSA 274
           PP  TL + N+  S++EE+L+ LFS+  G  K  K  +++R  +  I+   V  A
Sbjct: 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR-KMALIQMGSVEEA 171


>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
          Length = 150

 Score = 32.7 bits (73), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 218 KDNPPCN-TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276
           +D+ P +  +++GNLG + N+ EL   F      + + V R       F+EFED   A+ 
Sbjct: 67  RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP-PGFAFVEFEDPRDAAD 125

Query: 277 VHHNLQGAVI 286
              +L G  +
Sbjct: 126 AVRDLDGRTL 135


>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
           Cauc
          Length = 150

 Score = 32.0 bits (71), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 218 KDNPPCN-TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276
           +D+ P +  +++GNLG + N+ EL   F      + + V R       F+EFED   A+ 
Sbjct: 67  RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP-PGFAFVEFEDPRDAAD 125

Query: 277 VHHNLQGAVI 286
               L G  +
Sbjct: 126 AVRELDGRTL 135


>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
           The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
           Complex
          Length = 84

 Score = 31.6 bits (70), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275
           NPP   +++G++     EE++  L S       +K++   +        FIEF D+ S++
Sbjct: 1   NPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSA 60

Query: 276 SVHHNLQG 283
           S   NL G
Sbjct: 61  SAVRNLNG 68


>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor 9g8
          Length = 101

 Score = 30.8 bits (68), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAV 285
           +++GNLG    + EL   FS     + + + R       F+EFED   A      L G V
Sbjct: 3   VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP-GFAFVEFEDPRDAEDAVRGLDGKV 61

Query: 286 IPSS 289
           I  S
Sbjct: 62  ICGS 65


>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
           Motif Of Hypothetical Rna-Binding Protein Rbm19
          Length = 98

 Score = 30.0 bits (66), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHT-------VCFIEFEDVNSASSVH 278
           LFI NL  S  EE L+G+FS     K   + +++            F+E++    A    
Sbjct: 8   LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67

Query: 279 HNLQGAVI 286
             LQG  +
Sbjct: 68  KQLQGHTV 75


>pdb|2CQH|A Chain A, Solution Structure Of The Rna Binding Domain Of Igf-Ii
           Mrna- Binding Protein 2
          Length = 93

 Score = 30.0 bits (66), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283
           N L+IGNL  ++  ++LR LF  +      +VL +  +   F+++ D N A      L G
Sbjct: 9   NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYA--FVDYPDQNWAIRAIETLSG 66

Query: 284 AV 285
            V
Sbjct: 67  KV 68


>pdb|2YTC|A Chain A, Solution Structure Of Rna Binding Domain In Pre-Mrna-
           Splicing Factor Rbm22
          Length = 85

 Score = 30.0 bits (66), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSA 274
           TL++G LG++I E +LR  F      + + V+  +R    FI+F    +A
Sbjct: 14  TLYVGGLGDTITETDLRNHFYQFGEIRTITVV--QRQQCAFIQFATRQAA 61


>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
           Of Nono
 pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
           Of Nono
          Length = 99

 Score = 29.3 bits (64), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 52  IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEM 110
           +F+  LP D+ E E++ L       +A +V    +K  GF    T  LA  AK  L  M
Sbjct: 18  LFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM 74



 Score = 28.9 bits (63), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 226 LFIGNLGESINEEELRGLF 244
           LF+GNL   I EEE+R LF
Sbjct: 18  LFVGNLPPDITEEEMRKLF 36


>pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
           Protein 30
          Length = 90

 Score = 29.3 bits (64), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282
           LFIGNL     E+E+R LF       +  +++       F+  ED  +A     NL 
Sbjct: 11  LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN----YGFVHIEDKTAAEDAIRNLH 63


>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
           Pspc1NONO
          Length = 261

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 224 NTLFIGNLGESINEEELRGLFS 245
           + LF+GNL   I EEE+R LF 
Sbjct: 23  SRLFVGNLPPDITEEEMRKLFE 44



 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 52  IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEM 110
           +F+  LP D+ E E++ L       +A +V    +K  GF    T  LA  AK  L  M
Sbjct: 25  LFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM 81


>pdb|2DIV|A Chain A, Solution Structure Of The Rrm Domain Of Trna
           Selenocysteine Associated Protein
          Length = 99

 Score = 28.9 bits (63), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 225 TLFIGNLGESINEEEL-RGLFSAQPGFKQMKVLRQERHTV----CFIEFEDVNSASSVHH 279
           +L++G+L   ++E  + R   +       +K++R     +    CF+EF D+ +A    H
Sbjct: 11  SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 70

Query: 280 NLQGAVIPSS 289
            + G  +P +
Sbjct: 71  KINGKPLPGA 80


>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
           Azoospermia-Like
          Length = 89

 Score = 28.5 bits (62), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVL 256
           NT+F+G +   ++E E+R  F+     K++K++
Sbjct: 11  NTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 43


>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
           Azoospermia-Like In Complex With Mvh Rna, Uguuc
 pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
           Azoospermia-Like In Complex With Mvh Rna, Uguuc
 pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
           Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
          Length = 87

 Score = 28.5 bits (62), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVL 256
           NT+F+G +   ++E E+R  F+     K++K++
Sbjct: 10  NTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 42


>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
           Azoospermia-Like In Complex With Rna, Uuguucuu
          Length = 102

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVL 256
           NT+F+G +   ++E E+R  F+     K++K++
Sbjct: 10  NTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 42


>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
 pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
 pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
          Length = 98

 Score = 28.1 bits (61), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTV---CFIEFEDVNSASSVHHNL 281
           TL++GNL     EE++  LFS     K++ +   +  T    CF+E+     A +    +
Sbjct: 20  TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKTACGFCFVEYYSRADAENAMRYI 79

Query: 282 QG 283
            G
Sbjct: 80  NG 81


>pdb|2KVI|A Chain A, Structure Of Nab3 Rrm
          Length = 96

 Score = 28.1 bits (61), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 221 PPCNTLFIGNLG-ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNS 273
           PP + LFIGNL  +++++E+L  +FS      Q+ +    ++   FI+F++  S
Sbjct: 8   PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQS 57


>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
          Length = 102

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLR----QERHTVCFIEFEDVNSASSVHHNL 281
           LF+G L    NE+ L  +FS      ++ V++    Q      F+ FE+++ A      +
Sbjct: 15  LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 74

Query: 282 QGAVI 286
            G  +
Sbjct: 75  NGKSV 79


>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
           In Complex With A Cap Analogue M7gpppg
 pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
           In Complex With A Cap Analogue M7gpppg
 pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
           In Complex With A Cap Analogue M7gpppg
 pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
 pdb|1N52|B Chain B, Cap Binding Complex
 pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
 pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
 pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
          Length = 156

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 225 TLFIGNLGESINEEELRGLFSAQPGFKQ----MKVLRQERHTVCFIEFEDVNSASSVHHN 280
           TL++GNL     EE++  LFS     K+    +  +++     CF+E+     A +    
Sbjct: 41  TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100

Query: 281 LQGAVIP 287
           + G  + 
Sbjct: 101 INGTRLD 107


>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
           Stimulation Factor 64 Kda Subunit
          Length = 104

 Score = 27.3 bits (59), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHT-----VCFIEFEDVNSASSVHH 279
           ++F+GN+     EE+L+ +FS        +++  +R T       F E++D  +A S   
Sbjct: 10  SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLV-YDRETGKPKGYGFCEYQDQETALSAMR 68

Query: 280 NLQG 283
           NL G
Sbjct: 69  NLNG 72


>pdb|2CQI|A Chain A, Solution Structure Of The Rna Binding Domain Of
           Nucleolysin Tiar
          Length = 103

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 218 KDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ--ERHTVCFIEF 268
           +D+    TL++GNL   + E  +  LFS     K  K++ +       CF+EF
Sbjct: 10  EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEF 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,042,347
Number of Sequences: 62578
Number of extensions: 225275
Number of successful extensions: 532
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 32
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)