BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021857
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADT 139
K+AL + FD E L E AK N + + + T
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADT 139
K+AL + FD E L E AK N + + + T
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 105
+EVRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+
Sbjct: 21 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKN 80
Query: 106 ALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
AL + FD E L E AK N K ++A N
Sbjct: 81 ALNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPN 116
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%)
Query: 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 105
+EVRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+
Sbjct: 27 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQPVGFVIFDSRAGAEAAKN 86
Query: 106 ALQEMIFDAETKSVLHTEMAKKN 128
AL + FD E L E AK N
Sbjct: 87 ALNGIRFDPENPQTLRLEFAKAN 109
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 120 LHTEMAKKNLFVKRGIVADT-NAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHG- 177
++T +A+ L ++G A T N+ QS R +SA S F P P
Sbjct: 328 INTNVARNYLSSEKGYSAHTQNSSAQSPHPRV--------FSANSAFSTTSPPPLTPSTS 379
Query: 178 ----YMAPPPPPYDPYGGYGVP-PVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLG 232
+ A P P+ Y + PA P ++ P NPPCNT+++GNL
Sbjct: 380 RDYPFSASTISPSTPFSAYSSSHGIHQRIPASTPTNTN--PAD---QNPPCNTIYVGNLP 434
Query: 233 ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292
S +EEEL+ LFS Q G+K++ + +CF+EFE++ A NLQG + SS
Sbjct: 435 PSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGVCLSSSIKG 494
Query: 293 GMRIQY 298
G+R+ +
Sbjct: 495 GIRLSF 500
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 12/132 (9%)
Query: 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEM 110
TI++ LP E EL+ L GY+ KG PM F F A+ A LQ +
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV 486
Query: 111 IFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTG--GDY------THTGYSAP 162
+ K + +K L V+ + N + L +G +Y HTG
Sbjct: 487 CLSSSIKGGIRLSFSKNPLGVRSSSSSHNNHNGNVRNLHSGSMNNYNTDSLLNHTG--GH 544
Query: 163 SPFHAPPAPVWG 174
+ HA P+ WG
Sbjct: 545 NEVHASPS--WG 554
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%)
Query: 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 105
+EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+
Sbjct: 18 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKN 77
Query: 106 ALQEMIFDAETKSVLHTEMAKKN 128
AL + FD E L E AK N
Sbjct: 78 ALNGIRFDPENPQTLRLEFAKAN 100
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 46/80 (57%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
VRT+F++GLP D+K REL L R GYE S + ++P+GF F A AAK+AL
Sbjct: 19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDNRAGAEAAKNALN 78
Query: 109 EMIFDAETKSVLHTEMAKKN 128
+ FD E L E AK N
Sbjct: 79 GIRFDPENPQTLRLEFAKAN 98
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV-----NYKGEKPMGFALFSTAQLAV 101
+EVRT+F++GLP D K REL L R GYE S + N K P+GF F T A
Sbjct: 448 EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAE 507
Query: 102 AAKDALQEMIFDAETKSVLHTEMAKKNLFVKR 133
AAK LQ + FD + + E AK N V +
Sbjct: 508 AAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSK 539
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ 258
N PC+TLF+ NLG+ ++E EL+ +FS+ +K+L Q
Sbjct: 700 NAPCSTLFVANLGQFVSEHELKEVFSSHGNSNWLKLLHQ 738
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 118/286 (41%), Gaps = 38/286 (13%)
Query: 44 IAHDEVR---TIFITGLPDDVKERELQNLL--------RWLPGYEASQVNYKGEKPMGFA 92
++ EVR TI+I L + +K+ EL+ L + L + + +G+ F
Sbjct: 1 MSIQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQ---AFV 57
Query: 93 LFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGG 152
+F A A ++Q F + + +++ + +G + + Q KR
Sbjct: 58 IFKETSSATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVP 117
Query: 153 DYTHTGYSAPSPFHAP------------PAPVWGPHGYMAPPPPPYDPYGGY----GVPP 196
+ + P P P P PY + G G+ P
Sbjct: 118 EVQGVKNAMPGAALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAP 177
Query: 197 VQMPAPAPVP----APSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ 252
QMP P +P P P+Q +NPP + LF+ NL E NE L LF+ PGFK+
Sbjct: 178 GQMP-PGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236
Query: 253 MKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298
++++ RH + F+EF++ A + +LQG I S S M+I +
Sbjct: 237 VRLV-PGRHDIAFVEFDNEVQAGAARESLQGFKITQSNS--MKISF 279
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMI 111
+F+T LP++ E L L PG++ ++ G + F F A AA+++LQ
Sbjct: 210 LFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFDNEVQAGAARESLQG-- 266
Query: 112 FDAETKSVLHTEMAKK 127
F + + AKK
Sbjct: 267 FKITQSNSMKISFAKK 282
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHT--------VCFIEFEDV 271
NPPCNTL++GNL E+ELR LFS Q GF+++ R + T +CF+EF+DV
Sbjct: 534 NPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLS-FRNKNTTSNGHSHGPMCFVEFDDV 592
Query: 272 NSASSVHHNLQGAVIPS---SGSVGMRIQY 298
+ A+ L G +P S G+R+ +
Sbjct: 593 SFATRALAELYGRQLPRSTVSSKGGIRLSF 622
>sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mde7 PE=4 SV=1
Length = 761
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 217 TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276
T N PCNT+++GNL E++LR FS + G++++ + +CF+EFE+V A+
Sbjct: 595 TDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAK 654
Query: 277 VHHNLQGAVIPSSGSVGMRIQY 298
+QGA + G+R+ Y
Sbjct: 655 AMEKMQGAALDDKIKGGIRLSY 676
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 45 AHDEVRTIFIT---GLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAV 101
++D++ + I GLPDD +REL + + GY+ S++ + F A A+
Sbjct: 212 SNDDLESSIIQIVGGLPDDFDDRELSGIFTFCEGYDFSKIESENGHRKAIVYFRNAIAAL 271
Query: 102 AAKDAL 107
AK+ L
Sbjct: 272 KAKNML 277
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEM 110
TI++ L + +E++L+ GY KG PM F F A A + +Q
Sbjct: 603 TIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEKMQGA 662
Query: 111 IFDAETKSVLHTEMAKKNLFVK 132
D + K + +K L V+
Sbjct: 663 ALDDKIKGGIRLSYSKNPLGVR 684
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 12/79 (15%)
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHT-----------VCFIEF 268
NPPCNTL++GNL E+ELR LFS Q GF+++ R + ++ +CF+EF
Sbjct: 529 NPPCNTLYVGNLPPDATEQELRQLFSNQQGFRRLS-FRNKMNSHGHGNGHGHGPICFVEF 587
Query: 269 EDVNSASSVHHNLQGAVIP 287
EDV+ A+ L G+ +P
Sbjct: 588 EDVSFATRALAELYGSQLP 606
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 208 PSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIE 267
P P Q +NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+E
Sbjct: 197 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVE 255
Query: 268 FEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298
F++ A + LQG I + + M+I +
Sbjct: 256 FDNEVQAGAARDALQGFKITQNNA--MKISF 284
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM 253
+PP MP +P P Q +NPP + LF+ NL E NE L LF+ PGFK++
Sbjct: 180 IPPGAMPPQQLMPG--QMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237
Query: 254 KVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298
+++ RH + F+EF++ A + LQG I + + M+I +
Sbjct: 238 RLV-PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNA--MKISF 279
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM 253
+PP MP +P P Q +NPP + LF+ NL E NE L LF+ PGFK++
Sbjct: 180 IPPGAMPPQQLMPG--QMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237
Query: 254 KVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298
+++ RH + F+EF++ A + LQG I + + M+I +
Sbjct: 238 RLV-PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNA--MKISF 279
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 208 PSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIE 267
P P Q +NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+E
Sbjct: 192 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVE 250
Query: 268 FEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298
F++ A + LQG I + + M+I +
Sbjct: 251 FDNEVQAGAARDALQGFKITQNNA--MKISF 279
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 204
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 205 DALQGFKITPSHA--MKITY 222
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
+F+ LP++ E L L PG++ ++ G + F F A AA+DALQ
Sbjct: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFENDGQAGAARDALQ 208
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 204
Query: 279 HNLQGAVIPSSGSVGMRIQY 298
LQG I S + M+I Y
Sbjct: 205 DALQGFKITPSHA--MKITY 222
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
+F+ LP++ E L L PG++ ++ G + F F A AA+DALQ
Sbjct: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFENDGQAGAARDALQ 208
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+ PP LF+ NL E NE L LF+ PGFK+++ L RH + F+EF +++
Sbjct: 137 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVR-LVPNRHDIAFVEFTTELQSNAAK 195
Query: 279 HNLQGAVI 286
LQG I
Sbjct: 196 EALQGFKI 203
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
+ +F+T LP++ E L L PG++ ++ + F F+T + AAK+ALQ
Sbjct: 142 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFTTELQSNAAKEALQ 199
>sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=1 SV=1
Length = 907
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 212 VPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDV 271
+P +N K+N L++ NL SI+ EEL G+FS+ ++++ E V +IEF DV
Sbjct: 283 IPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQV-YIEFFDV 341
Query: 272 NSASSVHHNLQGAVI 286
A L G +
Sbjct: 342 RKAKVALQGLNGLEV 356
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280
PP N LFI NL N L+ LF PGFK+++++ + + + F+E+ED +S
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMI-EAKPGIAFVEYEDDVQSSMAMQA 210
Query: 281 LQGAVI 286
LQG I
Sbjct: 211 LQGFKI 216
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVC 264
VPAPS Q T PP N LFI NL L+ LF PGFK+++++ + +
Sbjct: 141 VPAPSFQPSGQETM--PPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMI-DAKPGIA 197
Query: 265 FIEFEDVNSASSVHHNLQGAVI 286
F+E+ED AS LQG I
Sbjct: 198 FVEYEDDVQASIAMQPLQGFKI 219
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 218 KDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSV 277
+D+PP TLF+ NL + + L LFS GFK++ ++ + + + FIEFED +
Sbjct: 161 RDDPPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMV-ESKKGIAFIEFEDEIKSGFA 219
Query: 278 HHNLQ 282
NLQ
Sbjct: 220 MTNLQ 224
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 219 DNPPCNTLFIGNLGESINE----EELRGLFSAQ------PGFKQMKVLRQERHTVCFIEF 268
D PP TL++ NL E I++ E+L LFS G K +K+ Q FI F
Sbjct: 7 DIPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQ-----AFIVF 61
Query: 269 EDVNSASSVHHNLQG 283
+D+ SAS+ + G
Sbjct: 62 KDITSASNALREMNG 76
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 98/259 (37%), Gaps = 43/259 (16%)
Query: 51 TIFITGLPDDVKERELQNLLR--------WLPGYEASQVNYKGEKPMGFALFSTAQLAVA 102
TI+I L + +K EL+ LR L + +KG+ + +F A
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQ---AWVVFEDVASATE 80
Query: 103 AKDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAP 162
A ++Q+ F + + + + K I+A + + R D
Sbjct: 81 ALKSMQDFPFHNKPMRIQYAK-------TKSDIIAKADGTFVPRERRKRNDEKPEKKQKR 133
Query: 163 SPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV-QMP--APAPVPAPSSYVPVQNTKD 219
H G + Y P G YG PP+ Q+P V P VP
Sbjct: 134 EQHHDVSQVGLGVNAY---------P-GVYGAPPLSQLPFAGAQKVMMPEIIVP------ 177
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH 279
N LF+ NL L+ LF PGFK+++++ + + + F+E+ D A++ +
Sbjct: 178 ---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV-EAKPGIAFVEYGDEGQATAAMN 233
Query: 280 NLQGAVIPSSGSVGMRIQY 298
+LQG I M I Y
Sbjct: 234 HLQGFKITKDNQ--MLISY 250
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 221 PPCNTLFIGNLGESINEEE----LRGLFSAQPGFKQMKVLRQERHT-VCFIEFEDVNSAS 275
PP T++I NL E I EE LR +FS + + +H ++ FEDV SA+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 276 SVHHNLQGAVIPSSGSVGMRIQY 298
++Q + MRIQY
Sbjct: 80 EALKSMQDFPFHNK---PMRIQY 99
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 98/259 (37%), Gaps = 43/259 (16%)
Query: 51 TIFITGLPDDVKERELQNLLR--------WLPGYEASQVNYKGEKPMGFALFSTAQLAVA 102
TI+I L + +K EL+ LR L + +KG+ + +F A
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQ---AWVVFEDVASATE 80
Query: 103 AKDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAP 162
A ++Q+ F + + + + K I+A + + R D
Sbjct: 81 ALKSMQDFPFHNKPMRIQYAK-------TKSDIIAKADGTFVPRERRKRNDEKPEKKQKR 133
Query: 163 SPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV-QMP--APAPVPAPSSYVPVQNTKD 219
H G + Y P G YG PP+ Q+P V P VP
Sbjct: 134 EQHHDVSQVGLGVNAY---------P-GVYGAPPLSQLPFAGAQKVMMPEIIVP------ 177
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH 279
N LF+ NL L+ LF PGFK+++++ + + + F+E+ D A++ +
Sbjct: 178 ---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV-EAKPGIAFVEYGDEGQATAAMN 233
Query: 280 NLQGAVIPSSGSVGMRIQY 298
+LQG I M I Y
Sbjct: 234 HLQGFKITKDNQ--MLISY 250
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 221 PPCNTLFIGNLGESINEEE----LRGLFSAQPGFKQMKVLRQERHT-VCFIEFEDVNSAS 275
PP T++I NL E I EE LR +FS + + +H ++ FEDV SA+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 276 SVHHNLQGAVIPSSGSVGMRIQY 298
++Q + MRIQY
Sbjct: 80 EALKSMQDFPFHNK---PMRIQY 99
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 44/251 (17%)
Query: 50 RTIFITGLPDDVKERELQNLL--------RWLPGYEASQVNYKGEKPMGFALFSTAQLAV 101
+TI+I L + VK EL+ L + L +KG+ + F +A A+
Sbjct: 18 QTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAI 77
Query: 102 AAKDAL----QEM-IFDAETKSVLHTEMAKKN-LFVKRGIVADTNAYDQSKRLRTGGDYT 155
A + +EM I A+TKS + +AK + FV R +++ + D
Sbjct: 78 AKMNNFPFYDKEMRIQYAKTKSDV---VAKADGTFVPR---EKRKRHEEKGGGKKKKDQH 131
Query: 156 HTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQ 215
H P ++ V+G A PP PY G G+ P APAP
Sbjct: 132 HDSTQMGMPMNSAYPGVYG-----AAPPLSQVPYPG-GMKPNMPEAPAP----------- 174
Query: 216 NTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSAS 275
P N LF+ NL L+ LF GFK+++++ + + + F+EF D ++
Sbjct: 175 ------PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMI-EAKPGIAFVEFADEMQST 227
Query: 276 SVHHNLQGAVI 286
LQG I
Sbjct: 228 VAMQGLQGFKI 238
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 217 TKDNPPCNT-LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSAS 275
T DN P NT +F+G L S+ ++ L+ +FS +K+ +R F++F + + A
Sbjct: 253 TTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR--CGFVQFSEKSCAE 310
Query: 276 SVHHNLQGAVIPSSGSVGMRIQY 298
L G + G +R+ +
Sbjct: 311 EALRMLNGVQL---GGTTVRLSW 330
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 49/129 (37%), Gaps = 14/129 (10%)
Query: 164 PFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPC 223
P HAPP P G PP QM P PS VQ T +
Sbjct: 12 PHHAPP-----PSAQQQYGYQQPYGIAGAAPPPPQMWNPQAAAPPS----VQPTTAD-EI 61
Query: 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHH 279
TL+IG+L ++E L G F+ KV+R ++ FIEF +A V
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 280 NLQGAVIPS 288
A IPS
Sbjct: 122 TFNNAPIPS 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,697,489
Number of Sequences: 539616
Number of extensions: 7161212
Number of successful extensions: 123632
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 810
Number of HSP's that attempted gapping in prelim test: 68655
Number of HSP's gapped (non-prelim): 39616
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)