Query 021857
Match_columns 306
No_of_seqs 134 out of 1736
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2E-31 4.4E-36 242.8 19.4 157 46-298 104-274 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.7E-30 8E-35 237.5 25.3 77 222-299 268-349 (352)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.4E-28 3E-33 235.3 25.2 194 46-298 272-479 (481)
4 TIGR01645 half-pint poly-U bin 100.0 5.1E-29 1.1E-33 238.6 19.8 169 47-301 105-286 (612)
5 KOG0117 Heterogeneous nuclear 100.0 1E-28 2.2E-33 220.8 17.3 218 47-302 81-334 (506)
6 KOG0148 Apoptosis-promoting RN 100.0 2E-28 4.4E-33 206.3 15.7 167 49-298 62-237 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.8E-28 1.5E-32 230.6 21.4 168 48-299 1-174 (481)
8 KOG1457 RNA binding protein (c 100.0 1.3E-27 2.8E-32 196.3 19.3 233 46-291 31-278 (284)
9 KOG4206 Spliceosomal protein s 100.0 3.2E-27 7E-32 195.5 18.8 206 46-298 6-221 (221)
10 TIGR01622 SF-CC1 splicing fact 100.0 7.6E-27 1.6E-31 222.7 20.7 167 46-298 86-265 (457)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.8E-26 8.1E-31 220.8 24.9 188 45-297 171-373 (509)
12 TIGR01648 hnRNP-R-Q heterogene 99.9 7.9E-27 1.7E-31 223.2 18.5 227 47-299 56-307 (578)
13 TIGR01628 PABP-1234 polyadenyl 99.9 2.8E-26 6.1E-31 224.1 18.5 149 51-294 2-161 (562)
14 KOG0144 RNA-binding protein CU 99.9 2.9E-26 6.3E-31 204.2 14.7 160 47-298 32-205 (510)
15 KOG0145 RNA-binding protein EL 99.9 5.7E-26 1.2E-30 190.5 14.9 158 47-300 39-210 (360)
16 TIGR01628 PABP-1234 polyadenyl 99.9 3.1E-25 6.7E-30 216.7 18.8 177 47-299 176-364 (562)
17 KOG0131 Splicing factor 3b, su 99.9 1.3E-25 2.8E-30 179.3 12.9 158 46-299 6-177 (203)
18 KOG0146 RNA-binding protein ET 99.9 1.3E-24 2.7E-29 183.1 16.1 257 32-294 3-359 (371)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.7E-24 1.2E-28 205.6 20.1 179 47-294 293-496 (509)
20 TIGR01622 SF-CC1 splicing fact 99.9 2.8E-23 6.1E-28 198.2 21.9 230 49-294 186-442 (457)
21 KOG0109 RNA-binding protein LA 99.9 1.1E-24 2.4E-29 185.5 10.5 145 50-297 3-148 (346)
22 KOG0145 RNA-binding protein EL 99.9 2.3E-23 5E-28 174.9 16.9 218 47-298 125-357 (360)
23 KOG0127 Nucleolar protein fibr 99.9 1.1E-22 2.3E-27 186.2 20.0 230 48-294 116-372 (678)
24 KOG0127 Nucleolar protein fibr 99.9 2.8E-23 6.1E-28 190.0 14.7 177 49-296 5-193 (678)
25 KOG0144 RNA-binding protein CU 99.9 7.9E-22 1.7E-26 176.1 16.7 94 33-130 108-208 (510)
26 KOG0123 Polyadenylate-binding 99.9 1.3E-20 2.9E-25 172.8 15.3 139 50-294 2-147 (369)
27 KOG0110 RNA-binding protein (R 99.8 5.6E-21 1.2E-25 180.1 12.4 160 51-298 517-692 (725)
28 KOG1190 Polypyrimidine tract-b 99.8 2.4E-19 5.1E-24 159.3 19.9 188 49-298 297-490 (492)
29 TIGR01645 half-pint poly-U bin 99.8 5.5E-18 1.2E-22 162.9 23.9 74 48-128 203-284 (612)
30 KOG0124 Polypyrimidine tract-b 99.8 4.5E-20 9.7E-25 161.8 8.6 167 49-301 113-292 (544)
31 KOG1456 Heterogeneous nuclear 99.8 9E-18 1.9E-22 147.8 21.6 231 46-300 117-364 (494)
32 KOG1190 Polypyrimidine tract-b 99.8 4.9E-18 1.1E-22 151.0 17.7 218 47-299 148-373 (492)
33 KOG0123 Polyadenylate-binding 99.8 1.7E-18 3.7E-23 159.0 13.8 153 52-294 79-240 (369)
34 KOG0148 Apoptosis-promoting RN 99.7 1.3E-17 2.9E-22 141.1 10.4 74 223-297 62-140 (321)
35 KOG0105 Alternative splicing f 99.7 2.1E-16 4.6E-21 126.9 15.9 169 47-288 4-177 (241)
36 KOG0147 Transcriptional coacti 99.7 5.8E-18 1.3E-22 155.9 7.4 164 47-294 177-352 (549)
37 KOG0110 RNA-binding protein (R 99.7 5E-16 1.1E-20 146.9 14.1 201 48-297 384-596 (725)
38 KOG0147 Transcriptional coacti 99.7 3.4E-16 7.3E-21 144.4 10.9 230 45-294 274-522 (549)
39 KOG0106 Alternative splicing f 99.7 1.7E-16 3.6E-21 133.2 8.1 164 50-294 2-165 (216)
40 PLN03134 glycine-rich RNA-bind 99.7 7.5E-16 1.6E-20 123.7 10.0 76 223-299 34-114 (144)
41 PLN03134 glycine-rich RNA-bind 99.6 3.2E-15 6.9E-20 120.1 12.0 77 46-129 31-115 (144)
42 KOG4205 RNA-binding protein mu 99.6 8.8E-16 1.9E-20 136.6 9.0 148 48-287 5-164 (311)
43 KOG1548 Transcription elongati 99.6 1E-14 2.2E-19 127.6 14.7 182 48-289 133-342 (382)
44 PF00076 RRM_1: RNA recognitio 99.6 2.3E-15 5E-20 105.5 8.6 64 226-289 1-67 (70)
45 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 5.4E-15 1.2E-19 136.4 13.1 75 47-128 267-349 (352)
46 KOG4212 RNA-binding protein hn 99.6 7.9E-14 1.7E-18 125.4 18.7 230 48-294 43-288 (608)
47 TIGR01648 hnRNP-R-Q heterogene 99.6 6.6E-15 1.4E-19 141.5 12.5 78 48-130 232-309 (578)
48 TIGR01659 sex-lethal sex-letha 99.6 1.4E-14 3E-19 132.4 10.1 79 219-298 103-186 (346)
49 KOG0107 Alternative splicing f 99.5 1.5E-14 3.2E-19 115.5 7.8 77 223-301 10-87 (195)
50 PLN03120 nucleic acid binding 99.5 4.1E-14 9E-19 121.8 9.6 73 223-297 4-78 (260)
51 KOG0125 Ataxin 2-binding prote 99.5 1.4E-13 3.1E-18 119.8 11.1 81 46-133 93-179 (376)
52 KOG0124 Polypyrimidine tract-b 99.5 3.9E-12 8.4E-17 112.2 19.3 71 49-126 210-288 (544)
53 PF00076 RRM_1: RNA recognitio 99.5 1.5E-13 3.2E-18 96.2 8.0 63 52-121 1-70 (70)
54 KOG0114 Predicted RNA-binding 99.5 1.7E-13 3.8E-18 100.0 8.0 71 223-294 18-89 (124)
55 PF14259 RRM_6: RNA recognitio 99.5 3.2E-13 6.9E-18 94.9 8.8 64 226-289 1-67 (70)
56 KOG0125 Ataxin 2-binding prote 99.5 1.6E-13 3.4E-18 119.5 8.6 71 223-294 96-168 (376)
57 KOG0114 Predicted RNA-binding 99.5 3.9E-13 8.5E-18 98.2 9.0 78 45-129 14-96 (124)
58 KOG0107 Alternative splicing f 99.5 1.9E-13 4.2E-18 109.1 7.8 77 47-130 8-87 (195)
59 KOG1456 Heterogeneous nuclear 99.5 1.5E-11 3.3E-16 108.8 20.5 185 46-289 284-475 (494)
60 PLN03121 nucleic acid binding 99.4 5.1E-13 1.1E-17 113.4 9.3 71 222-294 4-75 (243)
61 COG0724 RNA-binding proteins ( 99.4 3.3E-12 7.1E-17 112.4 14.7 166 49-287 115-293 (306)
62 PLN03120 nucleic acid binding 99.4 8.7E-13 1.9E-17 113.7 9.9 71 49-127 4-79 (260)
63 KOG0121 Nuclear cap-binding pr 99.4 4E-13 8.6E-18 101.9 6.4 71 48-125 35-113 (153)
64 PLN03213 repressor of silencin 99.4 4.7E-13 1E-17 122.1 7.8 79 223-302 10-91 (759)
65 KOG0121 Nuclear cap-binding pr 99.4 4.6E-13 1E-17 101.6 6.5 72 222-294 35-110 (153)
66 KOG4211 Splicing factor hnRNP- 99.4 9E-12 1.9E-16 114.0 15.6 159 48-294 9-176 (510)
67 KOG0122 Translation initiation 99.4 8.5E-13 1.8E-17 110.7 7.9 76 222-298 188-268 (270)
68 KOG0122 Translation initiation 99.4 2.1E-12 4.6E-17 108.4 10.2 77 45-128 185-269 (270)
69 smart00362 RRM_2 RNA recogniti 99.4 1.9E-12 4.1E-17 90.1 8.5 69 225-294 1-71 (72)
70 KOG4206 Spliceosomal protein s 99.4 1.2E-12 2.6E-17 109.1 7.9 80 222-302 8-93 (221)
71 KOG0117 Heterogeneous nuclear 99.4 1E-12 2.2E-17 118.7 7.9 80 47-133 257-336 (506)
72 PF14259 RRM_6: RNA recognitio 99.3 3.7E-12 7.9E-17 89.4 7.6 63 52-121 1-70 (70)
73 PF13893 RRM_5: RNA recognitio 99.3 4.6E-12 9.9E-17 85.0 7.6 55 240-296 1-56 (56)
74 KOG0120 Splicing factor U2AF, 99.3 4.9E-12 1.1E-16 118.3 10.5 183 47-301 287-495 (500)
75 PLN03213 repressor of silencin 99.3 6.3E-12 1.4E-16 114.9 9.3 76 47-129 8-89 (759)
76 smart00360 RRM RNA recognition 99.3 7.7E-12 1.7E-16 86.7 7.7 66 228-294 1-70 (71)
77 KOG0105 Alternative splicing f 99.3 2.7E-12 5.8E-17 103.4 5.5 74 223-297 6-81 (241)
78 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4E-16 85.5 8.6 69 225-294 1-72 (74)
79 KOG0129 Predicted RNA-binding 99.3 5.2E-11 1.1E-15 109.8 13.2 181 48-306 258-462 (520)
80 PLN03121 nucleic acid binding 99.3 2.7E-11 5.8E-16 103.0 10.0 72 47-126 3-79 (243)
81 KOG0111 Cyclophilin-type pepti 99.3 2.6E-12 5.6E-17 106.2 3.7 77 47-130 8-92 (298)
82 KOG0149 Predicted RNA-binding 99.3 8.7E-12 1.9E-16 104.3 6.1 60 223-282 12-75 (247)
83 smart00362 RRM_2 RNA recogniti 99.3 4.1E-11 8.8E-16 83.3 8.7 65 51-122 1-71 (72)
84 KOG0130 RNA-binding protein RB 99.3 1.2E-11 2.5E-16 94.8 6.1 77 222-299 71-154 (170)
85 KOG4212 RNA-binding protein hn 99.2 1E-09 2.2E-14 99.2 19.2 73 221-295 534-607 (608)
86 KOG0113 U1 small nuclear ribon 99.2 5.4E-11 1.2E-15 102.6 9.8 82 38-126 90-179 (335)
87 KOG4207 Predicted splicing fac 99.2 1.5E-11 3.3E-16 100.8 6.1 73 47-126 11-91 (256)
88 KOG0108 mRNA cleavage and poly 99.2 2.9E-11 6.2E-16 112.5 8.2 74 50-130 19-100 (435)
89 KOG0113 U1 small nuclear ribon 99.2 6.3E-11 1.4E-15 102.2 9.3 77 219-296 97-178 (335)
90 KOG0109 RNA-binding protein LA 99.2 1.3E-11 2.9E-16 106.0 4.8 70 225-299 4-74 (346)
91 KOG0111 Cyclophilin-type pepti 99.2 1.3E-11 2.8E-16 102.1 3.7 77 222-299 9-90 (298)
92 KOG0149 Predicted RNA-binding 99.2 3.5E-11 7.5E-16 100.8 6.2 71 49-127 12-90 (247)
93 KOG4207 Predicted splicing fac 99.2 4.4E-11 9.6E-16 98.1 6.0 71 223-294 13-87 (256)
94 KOG0132 RNA polymerase II C-te 99.2 5.7E-11 1.2E-15 113.8 7.3 74 223-299 421-495 (894)
95 KOG0130 RNA-binding protein RB 99.1 7.1E-11 1.5E-15 90.5 5.8 75 47-128 70-152 (170)
96 cd00590 RRM RRM (RNA recogniti 99.1 3.6E-10 7.8E-15 78.9 9.1 67 51-124 1-74 (74)
97 COG0724 RNA-binding proteins ( 99.1 1.7E-10 3.6E-15 101.5 9.0 74 223-297 115-193 (306)
98 KOG0108 mRNA cleavage and poly 99.1 8.4E-11 1.8E-15 109.4 7.3 74 224-298 19-97 (435)
99 KOG0126 Predicted RNA-binding 99.1 9.8E-12 2.1E-16 100.0 0.1 71 223-294 35-109 (219)
100 KOG4660 Protein Mei2, essentia 99.1 1.3E-10 2.8E-15 108.1 7.4 174 46-298 72-249 (549)
101 smart00360 RRM RNA recognition 99.1 4.3E-10 9.4E-15 77.7 7.8 63 54-123 1-71 (71)
102 KOG0153 Predicted RNA-binding 99.1 1.6E-10 3.5E-15 101.6 6.8 75 222-298 227-302 (377)
103 KOG0126 Predicted RNA-binding 99.1 8.2E-12 1.8E-16 100.4 -1.4 71 48-125 34-112 (219)
104 PF13893 RRM_5: RNA recognitio 99.1 7.7E-10 1.7E-14 74.1 8.0 53 66-125 1-56 (56)
105 KOG0112 Large RNA-binding prot 99.1 9.5E-11 2.1E-15 114.0 4.7 155 47-301 370-533 (975)
106 KOG0131 Splicing factor 3b, su 99.1 1.9E-10 4.1E-15 92.7 5.0 71 223-294 9-83 (203)
107 smart00361 RRM_1 RNA recogniti 99.0 1.9E-09 4.2E-14 75.6 6.9 53 237-289 2-65 (70)
108 KOG0132 RNA polymerase II C-te 99.0 1.4E-09 3.1E-14 104.5 7.8 73 49-128 421-495 (894)
109 KOG0120 Splicing factor U2AF, 99.0 5.7E-09 1.2E-13 98.0 11.6 178 46-294 172-363 (500)
110 KOG1457 RNA binding protein (c 98.9 1E-08 2.3E-13 85.2 11.1 79 222-300 33-119 (284)
111 KOG4454 RNA binding protein (R 98.9 3.9E-10 8.5E-15 93.4 1.7 132 47-287 7-151 (267)
112 KOG0146 RNA-binding protein ET 98.9 1.5E-09 3.2E-14 92.5 5.0 77 46-129 282-366 (371)
113 smart00361 RRM_1 RNA recogniti 98.9 6.9E-09 1.5E-13 72.8 6.9 58 62-122 1-69 (70)
114 KOG0415 Predicted peptidyl pro 98.9 3.5E-09 7.7E-14 93.5 6.1 81 217-298 233-318 (479)
115 KOG2193 IGF-II mRNA-binding pr 98.8 6.5E-10 1.4E-14 100.1 0.3 150 50-296 2-154 (584)
116 KOG0151 Predicted splicing reg 98.8 1.3E-08 2.9E-13 97.0 8.4 77 221-298 172-256 (877)
117 KOG1365 RNA-binding protein Fu 98.8 1.6E-08 3.5E-13 90.2 8.2 182 51-295 163-357 (508)
118 KOG4660 Protein Mei2, essentia 98.8 4E-09 8.7E-14 98.3 4.4 72 220-293 72-143 (549)
119 KOG4661 Hsp27-ERE-TATA-binding 98.8 3.9E-08 8.4E-13 91.8 10.0 81 46-129 402-486 (940)
120 KOG0153 Predicted RNA-binding 98.8 2E-08 4.3E-13 88.7 7.7 73 48-127 227-302 (377)
121 KOG4211 Splicing factor hnRNP- 98.7 1.2E-06 2.5E-11 81.0 17.7 75 48-126 102-180 (510)
122 PF04059 RRM_2: RNA recognitio 98.6 2.8E-07 6E-12 68.3 8.9 79 50-128 2-87 (97)
123 KOG0128 RNA-binding protein SA 98.6 5.4E-09 1.2E-13 101.6 -0.3 131 50-294 668-809 (881)
124 KOG0226 RNA-binding proteins [ 98.6 1.6E-07 3.4E-12 79.8 8.5 71 223-294 190-264 (290)
125 KOG4208 Nucleolar RNA-binding 98.6 1.3E-07 2.7E-12 78.1 7.3 72 222-294 48-124 (214)
126 KOG4210 Nuclear localization s 98.6 6.6E-08 1.4E-12 86.1 6.0 165 48-299 87-264 (285)
127 KOG0533 RRM motif-containing p 98.6 1.5E-07 3.2E-12 81.1 7.5 71 223-294 83-156 (243)
128 KOG4661 Hsp27-ERE-TATA-binding 98.6 1E-07 2.2E-12 89.1 6.3 79 222-301 404-487 (940)
129 KOG0106 Alternative splicing f 98.5 4.8E-08 1E-12 82.4 3.4 68 225-297 3-71 (216)
130 PF04059 RRM_2: RNA recognitio 98.5 7.4E-07 1.6E-11 66.1 7.6 74 224-297 2-85 (97)
131 KOG4676 Splicing factor, argin 98.4 2.1E-07 4.6E-12 83.4 4.8 196 49-287 7-214 (479)
132 KOG1365 RNA-binding protein Fu 98.4 6.4E-06 1.4E-10 73.9 13.8 156 48-280 59-225 (508)
133 KOG4208 Nucleolar RNA-binding 98.4 8.5E-07 1.8E-11 73.3 7.1 76 47-128 47-130 (214)
134 KOG4454 RNA binding protein (R 98.4 1.1E-07 2.4E-12 79.0 2.0 72 222-294 8-81 (267)
135 KOG0116 RasGAP SH3 binding pro 98.4 4.2E-07 9.2E-12 84.4 6.0 71 222-294 287-361 (419)
136 PF11608 Limkain-b1: Limkain b 98.4 1.2E-06 2.6E-11 62.1 6.8 67 224-297 3-75 (90)
137 PF11608 Limkain-b1: Limkain b 98.4 1.9E-06 4.2E-11 61.1 7.4 74 50-128 3-77 (90)
138 KOG0151 Predicted splicing reg 98.4 1.5E-06 3.3E-11 83.3 8.9 78 46-130 171-259 (877)
139 KOG0533 RRM motif-containing p 98.3 2.1E-06 4.5E-11 74.1 8.6 76 48-130 82-164 (243)
140 KOG0116 RasGAP SH3 binding pro 98.3 3.2E-06 6.9E-11 78.7 10.3 76 46-129 285-368 (419)
141 KOG0415 Predicted peptidyl pro 98.3 1.2E-06 2.5E-11 77.8 6.5 79 45-130 235-321 (479)
142 KOG1548 Transcription elongati 98.3 2.1E-06 4.6E-11 76.0 6.9 75 223-298 134-220 (382)
143 KOG4205 RNA-binding protein mu 98.2 1.3E-06 2.8E-11 78.3 3.8 66 222-287 5-78 (311)
144 PF08777 RRM_3: RNA binding mo 98.2 5.3E-06 1.1E-10 62.8 6.1 59 224-284 2-60 (105)
145 KOG0226 RNA-binding proteins [ 98.1 4.4E-06 9.5E-11 71.2 4.8 74 49-125 190-267 (290)
146 KOG4209 Splicing factor RNPS1, 97.9 2.4E-05 5.3E-10 67.6 6.2 71 222-294 100-174 (231)
147 KOG4307 RNA binding protein RB 97.9 0.00015 3.3E-09 69.8 11.4 74 47-123 865-942 (944)
148 KOG4307 RNA binding protein RB 97.9 0.00018 4E-09 69.3 11.8 187 49-294 311-508 (944)
149 KOG1855 Predicted RNA-binding 97.9 1.5E-05 3.3E-10 72.5 4.3 68 220-287 228-312 (484)
150 KOG4209 Splicing factor RNPS1, 97.8 2.8E-05 6.1E-10 67.2 4.8 76 45-128 97-180 (231)
151 COG5175 MOT2 Transcriptional r 97.7 6.2E-05 1.4E-09 66.6 4.9 77 50-129 115-204 (480)
152 PF08777 RRM_3: RNA binding mo 97.6 0.00016 3.6E-09 54.7 5.8 57 50-110 2-60 (105)
153 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00031 6.8E-09 52.4 6.8 72 223-297 6-90 (100)
154 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00034 7.5E-09 45.9 4.6 52 224-278 2-53 (53)
155 COG5175 MOT2 Transcriptional r 97.3 0.00031 6.7E-09 62.3 5.1 79 224-303 115-207 (480)
156 KOG1995 Conserved Zn-finger pr 97.2 0.00047 1E-08 61.8 5.3 74 220-294 63-148 (351)
157 KOG3152 TBP-binding protein, a 97.2 0.00017 3.7E-09 61.7 2.2 69 223-291 74-158 (278)
158 KOG2314 Translation initiation 97.2 0.00078 1.7E-08 63.6 6.6 75 48-124 57-140 (698)
159 KOG0128 RNA-binding protein SA 97.2 3.2E-05 6.9E-10 76.0 -3.2 77 223-302 667-748 (881)
160 KOG0115 RNA-binding protein p5 97.1 0.0013 2.8E-08 56.5 6.0 56 226-281 34-92 (275)
161 KOG4210 Nuclear localization s 97.0 0.00043 9.3E-09 61.9 2.8 78 45-130 180-266 (285)
162 KOG2314 Translation initiation 97.0 0.0019 4.1E-08 61.2 6.9 72 223-294 58-138 (698)
163 KOG2416 Acinus (induces apopto 97.0 0.002 4.4E-08 61.3 6.9 78 47-128 442-522 (718)
164 KOG0112 Large RNA-binding prot 96.9 0.00018 3.8E-09 71.3 -0.4 80 216-296 365-448 (975)
165 PF08952 DUF1866: Domain of un 96.9 0.0041 8.9E-08 49.3 7.2 74 219-298 23-105 (146)
166 KOG4849 mRNA cleavage factor I 96.8 0.015 3.2E-07 52.2 10.3 73 49-128 80-163 (498)
167 PF08675 RNA_bind: RNA binding 96.8 0.0081 1.8E-07 42.8 6.9 55 223-282 9-63 (87)
168 KOG1995 Conserved Zn-finger pr 96.7 0.0022 4.7E-08 57.7 4.3 77 46-129 63-155 (351)
169 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0059 1.3E-07 40.0 5.2 50 50-104 2-53 (53)
170 KOG2193 IGF-II mRNA-binding pr 96.6 0.0024 5.2E-08 58.5 4.4 70 225-296 3-73 (584)
171 KOG0129 Predicted RNA-binding 96.6 0.0049 1.1E-07 57.9 6.4 58 46-106 367-432 (520)
172 PF10309 DUF2414: Protein of u 96.6 0.01 2.2E-07 40.0 6.2 54 224-281 6-62 (62)
173 KOG4849 mRNA cleavage factor I 96.6 0.0029 6.3E-08 56.6 4.5 76 223-298 80-162 (498)
174 KOG4676 Splicing factor, argin 96.6 0.0022 4.7E-08 58.2 3.7 72 224-297 8-88 (479)
175 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.016 3.5E-07 43.3 7.5 71 48-127 5-91 (100)
176 KOG2416 Acinus (induces apopto 96.5 0.0025 5.4E-08 60.7 3.5 77 219-297 440-520 (718)
177 KOG1996 mRNA splicing factor [ 96.3 0.0099 2.1E-07 52.1 6.0 72 222-294 280-361 (378)
178 PF10309 DUF2414: Protein of u 96.3 0.029 6.2E-07 37.9 6.8 56 50-107 6-62 (62)
179 PF08952 DUF1866: Domain of un 96.2 0.02 4.4E-07 45.4 6.8 72 47-126 25-105 (146)
180 KOG2068 MOT2 transcription fac 96.2 0.0022 4.8E-08 57.2 1.6 78 224-302 78-166 (327)
181 KOG4574 RNA-binding protein (c 96.1 0.003 6.4E-08 62.5 2.2 76 221-298 296-373 (1007)
182 PF07576 BRAP2: BRCA1-associat 96.1 0.06 1.3E-06 41.0 8.9 66 223-288 13-81 (110)
183 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.0076 1.6E-07 50.0 3.6 78 47-127 5-97 (176)
184 KOG2202 U2 snRNP splicing fact 95.9 0.0036 7.8E-08 53.8 1.6 56 238-294 83-142 (260)
185 KOG2202 U2 snRNP splicing fact 95.9 0.0063 1.4E-07 52.4 3.0 49 76-127 92-147 (260)
186 KOG2253 U1 snRNP complex, subu 95.9 0.016 3.4E-07 56.2 5.9 62 47-113 38-99 (668)
187 PF15023 DUF4523: Protein of u 95.7 0.026 5.7E-07 44.4 5.4 65 218-285 81-149 (166)
188 PF04847 Calcipressin: Calcipr 95.6 0.026 5.7E-07 47.0 5.5 59 236-297 8-69 (184)
189 PF08675 RNA_bind: RNA binding 95.6 0.054 1.2E-06 38.7 6.1 55 49-109 9-64 (87)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.044 9.4E-07 45.5 6.8 67 223-289 7-83 (176)
191 KOG3152 TBP-binding protein, a 95.4 0.011 2.3E-07 50.9 2.5 64 49-113 74-154 (278)
192 KOG1855 Predicted RNA-binding 95.4 0.041 8.8E-07 50.8 6.2 63 46-112 228-311 (484)
193 KOG4410 5-formyltetrahydrofola 94.1 0.38 8.2E-06 42.3 8.6 46 49-98 330-378 (396)
194 KOG0804 Cytoplasmic Zn-finger 93.9 0.2 4.3E-06 46.7 6.9 67 223-289 74-143 (493)
195 KOG2253 U1 snRNP complex, subu 93.8 0.12 2.7E-06 50.2 5.7 66 219-289 36-101 (668)
196 PF04847 Calcipressin: Calcipr 93.8 0.11 2.4E-06 43.3 4.8 58 62-126 8-69 (184)
197 PF11767 SET_assoc: Histone ly 93.8 0.3 6.6E-06 33.5 6.1 49 60-113 11-59 (66)
198 PF15023 DUF4523: Protein of u 93.6 0.41 8.9E-06 37.8 7.2 76 45-125 82-159 (166)
199 KOG2068 MOT2 transcription fac 92.2 0.048 1E-06 48.9 0.4 77 49-129 77-164 (327)
200 PF07576 BRAP2: BRCA1-associat 91.8 2.5 5.4E-05 32.1 9.3 77 49-125 13-92 (110)
201 KOG4285 Mitotic phosphoprotein 91.7 0.46 9.9E-06 42.1 5.8 62 224-289 198-259 (350)
202 KOG2591 c-Mpl binding protein, 91.5 0.66 1.4E-05 44.5 7.1 75 222-301 174-261 (684)
203 KOG1996 mRNA splicing factor [ 91.3 0.57 1.2E-05 41.4 6.0 71 48-125 280-364 (378)
204 KOG0115 RNA-binding protein p5 91.2 0.25 5.5E-06 42.7 3.7 72 49-124 31-110 (275)
205 KOG4574 RNA-binding protein (c 91.0 0.16 3.5E-06 50.7 2.6 75 51-130 300-376 (1007)
206 PF03880 DbpA: DbpA RNA bindin 88.3 2.3 5E-05 29.7 6.2 56 233-294 11-71 (74)
207 KOG2318 Uncharacterized conser 87.2 2.6 5.6E-05 40.8 7.5 70 220-289 171-296 (650)
208 PF03880 DbpA: DbpA RNA bindin 85.6 3.3 7.1E-05 28.9 5.8 63 59-125 11-74 (74)
209 PF11767 SET_assoc: Histone ly 83.9 5.1 0.00011 27.4 5.8 50 234-288 11-60 (66)
210 KOG2135 Proteins containing th 83.8 0.63 1.4E-05 43.7 1.8 72 222-297 371-444 (526)
211 KOG4285 Mitotic phosphoprotein 81.7 13 0.00027 33.3 8.8 56 52-113 200-257 (350)
212 PF07292 NID: Nmi/IFP 35 domai 81.5 3.5 7.5E-05 30.0 4.5 23 223-245 52-74 (88)
213 KOG2591 c-Mpl binding protein, 79.5 4.2 9E-05 39.3 5.5 56 49-108 175-233 (684)
214 KOG0804 Cytoplasmic Zn-finger 79.4 9.5 0.00021 35.9 7.7 64 49-112 74-140 (493)
215 KOG2318 Uncharacterized conser 79.0 12 0.00026 36.4 8.4 79 46-125 171-305 (650)
216 PF07292 NID: Nmi/IFP 35 domai 71.1 1.5 3.3E-05 31.9 0.3 28 47-74 50-77 (88)
217 KOG2891 Surface glycoprotein [ 69.9 2.8 6.1E-05 36.8 1.7 65 223-287 149-248 (445)
218 KOG4019 Calcineurin-mediated s 68.2 3.5 7.6E-05 34.0 1.9 71 224-296 11-87 (193)
219 PF14111 DUF4283: Domain of un 66.3 9.5 0.00021 30.2 4.1 56 50-105 16-73 (153)
220 cd04908 ACT_Bt0572_1 N-termina 65.0 38 0.00083 22.5 7.9 50 236-286 14-64 (66)
221 KOG4483 Uncharacterized conser 64.7 11 0.00024 34.9 4.5 55 223-280 391-446 (528)
222 COG0150 PurM Phosphoribosylami 64.6 1.7 3.6E-05 39.6 -0.7 49 236-284 274-322 (345)
223 KOG4483 Uncharacterized conser 63.9 17 0.00037 33.8 5.5 57 48-106 390-446 (528)
224 PF13820 Nucleic_acid_bd: Puta 63.7 16 0.00035 29.3 4.8 58 51-108 6-66 (149)
225 PF03468 XS: XS domain; Inter 59.0 11 0.00024 28.9 3.0 52 224-276 9-71 (116)
226 KOG2135 Proteins containing th 58.5 7.3 0.00016 36.9 2.3 73 49-129 372-447 (526)
227 PF10567 Nab6_mRNP_bdg: RNA-re 52.7 18 0.00039 32.3 3.6 77 223-300 15-109 (309)
228 KOG4410 5-formyltetrahydrofola 50.7 1.2E+02 0.0027 27.0 8.3 48 223-272 330-378 (396)
229 cd04883 ACT_AcuB C-terminal AC 47.4 83 0.0018 20.9 6.4 51 236-287 14-69 (72)
230 PF08544 GHMP_kinases_C: GHMP 46.3 71 0.0015 22.1 5.5 44 238-282 37-80 (85)
231 KOG1295 Nonsense-mediated deca 45.3 33 0.00072 31.8 4.3 71 224-294 8-85 (376)
232 PRK14548 50S ribosomal protein 44.7 62 0.0013 23.3 4.8 57 51-107 22-81 (84)
233 PF08734 GYD: GYD domain; Int 44.1 92 0.002 22.6 5.8 46 238-283 23-69 (91)
234 PRK14548 50S ribosomal protein 43.9 83 0.0018 22.6 5.3 55 226-280 23-80 (84)
235 cd04882 ACT_Bt0572_2 C-termina 43.4 89 0.0019 20.1 5.5 48 238-286 14-64 (65)
236 PRK15464 cold shock-like prote 43.3 21 0.00045 24.7 2.1 20 77-96 6-25 (70)
237 PF08544 GHMP_kinases_C: GHMP 41.8 1.1E+02 0.0025 21.0 6.4 41 64-108 37-80 (85)
238 PF02714 DUF221: Domain of unk 41.4 31 0.00066 31.2 3.6 36 90-130 1-36 (325)
239 TIGR03636 L23_arch archaeal ri 41.2 1E+02 0.0022 21.7 5.4 54 226-279 16-72 (77)
240 PRK09507 cspE cold shock prote 40.7 26 0.00056 24.0 2.3 19 77-95 5-23 (69)
241 KOG1295 Nonsense-mediated deca 40.0 35 0.00076 31.6 3.6 66 48-117 6-82 (376)
242 PRK10943 cold shock-like prote 39.9 27 0.00059 23.9 2.3 20 77-96 5-24 (69)
243 cd04889 ACT_PDH-BS-like C-term 39.8 97 0.0021 19.5 5.4 42 237-278 12-55 (56)
244 PF11411 DNA_ligase_IV: DNA li 39.6 18 0.00039 21.5 1.1 16 233-248 19-34 (36)
245 TIGR03636 L23_arch archaeal ri 39.2 85 0.0018 22.1 4.7 55 51-105 15-72 (77)
246 PRK09937 stationary phase/star 39.2 29 0.00062 24.3 2.3 18 78-95 4-21 (74)
247 PRK14998 cold shock-like prote 38.5 30 0.00065 24.1 2.3 19 78-96 4-22 (73)
248 PRK15463 cold shock-like prote 37.2 30 0.00066 23.8 2.2 19 78-96 7-25 (70)
249 PHA01632 hypothetical protein 36.8 35 0.00076 22.3 2.2 21 53-73 20-40 (64)
250 PF00313 CSD: 'Cold-shock' DNA 36.4 43 0.00094 22.3 2.9 19 78-96 3-21 (66)
251 PF14893 PNMA: PNMA 34.1 39 0.00084 31.0 2.9 51 46-96 15-71 (331)
252 PRK10354 RNA chaperone/anti-te 33.7 37 0.00079 23.3 2.2 18 78-95 7-24 (70)
253 KOG2295 C2H2 Zn-finger protein 33.3 5.1 0.00011 38.7 -2.9 66 48-113 230-299 (648)
254 PRK09890 cold shock protein Cs 32.5 40 0.00086 23.2 2.2 18 78-95 7-24 (70)
255 PF14026 DUF4242: Protein of u 32.4 1.8E+02 0.0038 20.4 7.3 61 226-287 3-72 (77)
256 TIGR02381 cspD cold shock doma 31.3 45 0.00098 22.7 2.3 19 78-96 4-22 (68)
257 cd04458 CSP_CDS Cold-Shock Pro 30.6 53 0.0012 21.8 2.5 19 78-96 3-21 (65)
258 TIGR01873 cas_CT1978 CRISPR-as 30.4 94 0.002 22.5 3.8 48 48-96 24-74 (87)
259 PF14893 PNMA: PNMA 29.9 31 0.00068 31.6 1.6 67 223-294 18-91 (331)
260 KOG4019 Calcineurin-mediated s 29.1 1E+02 0.0022 25.7 4.2 73 50-125 11-87 (193)
261 PF15513 DUF4651: Domain of un 28.7 1.1E+02 0.0023 20.7 3.6 13 64-80 9-21 (62)
262 PF09707 Cas_Cas2CT1978: CRISP 28.1 1.3E+02 0.0028 21.7 4.2 46 48-95 24-72 (86)
263 PF08156 NOP5NT: NOP5NT (NUC12 28.0 25 0.00054 24.0 0.5 39 64-108 27-65 (67)
264 KOG2295 C2H2 Zn-finger protein 27.9 13 0.00029 35.9 -1.1 65 223-287 231-299 (648)
265 PRK10672 rare lipoprotein A; P 27.6 3.2E+02 0.0068 25.5 7.6 63 47-112 287-352 (361)
266 COG5178 PRP8 U5 snRNP spliceos 27.4 60 0.0013 34.8 3.2 25 49-73 72-96 (2365)
267 KOG4213 RNA-binding protein La 25.5 80 0.0017 26.2 3.0 53 223-280 111-169 (205)
268 cd04879 ACT_3PGDH-like ACT_3PG 24.5 2E+02 0.0043 18.4 4.6 45 226-270 2-49 (71)
269 cd04903 ACT_LSD C-terminal ACT 24.1 2.1E+02 0.0044 18.4 6.1 46 236-282 12-60 (71)
270 PRK11558 putative ssRNA endonu 23.6 1.5E+02 0.0032 22.0 3.9 47 48-96 26-75 (97)
271 COG0002 ArgC Acetylglutamate s 23.0 1.6E+02 0.0035 27.2 4.9 32 225-257 248-280 (349)
272 KOG4213 RNA-binding protein La 22.8 98 0.0021 25.7 3.1 52 47-106 109-169 (205)
273 PF08576 DUF1764: Eukaryotic p 21.8 38 0.00082 25.2 0.5 9 297-305 93-101 (102)
274 KOG4008 rRNA processing protei 21.7 63 0.0014 28.0 1.9 34 222-255 39-72 (261)
275 PRK12450 foldase protein PrsA; 20.9 1.9E+02 0.0042 26.1 5.0 43 60-112 132-176 (309)
276 cd00027 BRCT Breast Cancer Sup 20.2 2.4E+02 0.0052 17.7 5.7 46 50-99 2-47 (72)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=2e-31 Score=242.75 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=134.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
....++|||+|||+++||++|+++|+.| |.|+.++ .+||||||+|.+.++|++|++.|+|..+. +
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~----G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~---g 176 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTI----GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR---N 176 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC---C
Confidence 4568999999999999999999999999 8874431 24699999999999999999999999998 7
Q ss_pred CeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (306)
Q Consensus 118 ~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (306)
+.|+|.|++......
T Consensus 177 r~i~V~~a~p~~~~~----------------------------------------------------------------- 191 (346)
T TIGR01659 177 KRLKVSYARPGGESI----------------------------------------------------------------- 191 (346)
T ss_pred ceeeeeccccccccc-----------------------------------------------------------------
Confidence 999999874321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHH
Q 021857 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNS 273 (306)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~ 273 (306)
..++|||+|||.++|+++|+++|+.||.|+.++|+.+.. +|||||+|++.++
T Consensus 192 ------------------------~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 192 ------------------------KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred ------------------------ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 135699999999999999999999999999999996542 3899999999999
Q ss_pred HHHHHHHhCCceeCCC-CceeE-EeeC
Q 021857 274 ASSVHHNLQGAVIPSS-GSVGM-RIQY 298 (306)
Q Consensus 274 A~~Ai~~lnG~~i~~~-~~~~i-~~k~ 298 (306)
|++||+.|||..|.+. .+++| |++.
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCc
Confidence 9999999999999764 57888 8764
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.7e-30 Score=237.51 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.+.+|||+|||.++++++|+++|++||.|++|+|+.+. .+|||||+|++.++|.+||++|||+.|.|+ +|+| |.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr-~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNR-VLQVSFK 346 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEEc
Confidence 35689999999999999999999999999999999654 259999999999999999999999999955 8999 87
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
.+.
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 654
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.4e-28 Score=235.33 Aligned_cols=194 Identities=19% Similarity=0.226 Sum_probs=142.0
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 46 ~~~~~~LfV~nLp~-~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
..++++|||+||++ .+|+++|+++|+.| |.|.+++ ..+|+|||+|.+.++|+.|++.|||..|+ |+.|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~y----G~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~---g~~l~ 344 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVY----GNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLF---GKPLR 344 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CceEE
Confidence 45789999999997 69999999999999 9986553 45799999999999999999999999998 89999
Q ss_pred EEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (306)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (306)
|.+++........ .......... ... +..... . .+
T Consensus 345 v~~s~~~~~~~~~---~~~~~~~~~~---~~d-----------~~~~~~---~--r~----------------------- 379 (481)
T TIGR01649 345 VCPSKQQNVQPPR---EGQLDDGLTS---YKD-----------YSSSRN---H--RF----------------------- 379 (481)
T ss_pred EEEcccccccCCC---CCcCcCCCcc---ccc-----------ccCCcc---c--cC-----------------------
Confidence 9998655321110 0000000000 000 000000 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCC--ceEEEEEecC--CcceEEEEECCHHHHHHH
Q 021857 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPG--FKQMKVLRQE--RHTVCFIEFEDVNSASSV 277 (306)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~--i~~vkl~~~~--~~g~aFV~F~~~~~A~~A 277 (306)
..+.. .......+++.+|||+|||..+|+++|+++|+.||. |+.++++++. ++++|||+|++.++|.+|
T Consensus 380 ----~~~~~---~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~A 452 (481)
T TIGR01649 380 ----KKPGS---ANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEA 452 (481)
T ss_pred ----CCccc---ccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHH
Confidence 00000 000112356899999999999999999999999998 8899998533 248999999999999999
Q ss_pred HHHhCCceeCCCC-----ceeE-EeeC
Q 021857 278 HHNLQGAVIPSSG-----SVGM-RIQY 298 (306)
Q Consensus 278 i~~lnG~~i~~~~-----~~~i-~~k~ 298 (306)
|..|||+.|.+.. .|+| |+|.
T Consensus 453 l~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 453 LIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred HHHhcCCccCCCCCCccceEEEEeccC
Confidence 9999999999775 6999 9985
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=5.1e-29 Score=238.56 Aligned_cols=169 Identities=9% Similarity=0.172 Sum_probs=136.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
...++|||+||++++|+++|+++|+.| |.|..++ .+||||||+|.+.++|++|++.|||..|. ||
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~f----G~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~---GR 177 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPF----GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GR 177 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHcc----CCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe---cc
Confidence 457899999999999999999999999 8885442 34799999999999999999999999998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|+|.+......... . . . +.
T Consensus 178 ~IkV~rp~~~p~a~~----------~-------~-------~------------~~------------------------ 197 (612)
T TIGR01645 178 NIKVGRPSNMPQAQP----------I-------I-------D------------MV------------------------ 197 (612)
T ss_pred eeeeccccccccccc----------c-------c-------c------------cc------------------------
Confidence 999985321100000 0 0 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSA 274 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A 274 (306)
.......++|||+||+.++++++|+++|+.||.|++++|..+. ++|||||+|++.++|
T Consensus 198 ------------------~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 198 ------------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred ------------------cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 0001124689999999999999999999999999999999653 349999999999999
Q ss_pred HHHHHHhCCceeCCCCceeE-EeeCCcc
Q 021857 275 SSVHHNLQGAVIPSSGSVGM-RIQYPFC 301 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~~~~~~i-~~k~~~~ 301 (306)
.+||+.|||+.|+|+ .++| ++..|..
T Consensus 260 ~kAI~amNg~elgGr-~LrV~kAi~pP~ 286 (612)
T TIGR01645 260 SEAIASMNLFDLGGQ-YLRVGKCVTPPD 286 (612)
T ss_pred HHHHHHhCCCeeCCe-EEEEEecCCCcc
Confidence 999999999999955 7999 9887654
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=220.83 Aligned_cols=218 Identities=17% Similarity=0.189 Sum_probs=144.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
+-++.||||.||.++.||||+-+|++. |.|..+| .+||||||.|.+.++|++|++.||+..|.+ ||
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEki----G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~--GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKI----GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP--GK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhc----cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC--CC
Confidence 458999999999999999999999999 9995553 358999999999999999999999999976 99
Q ss_pred eEEEEEccccch-----hccccccCCccccccccccCCCC---CCCCCCCCC---C----------------CCCCCCCC
Q 021857 119 VLHTEMAKKNLF-----VKRGIVADTNAYDQSKRLRTGGD---YTHTGYSAP---S----------------PFHAPPAP 171 (306)
Q Consensus 119 ~i~V~~a~~~~~-----~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~---~----------------~~~~~~~~ 171 (306)
.|.|..+..+.. ..+.+..+.-..+..+...-..+ ...+..... . ..-++-..
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 999988765543 11111000000000000000000 000000000 0 00000001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCce
Q 021857 172 VWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFK 251 (306)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~ 251 (306)
.|++..... ++-.......+.....++|||+||+.++|+|.|+.+|+.||.|+
T Consensus 235 lwgn~~tVd---------------------------WAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ve 287 (506)
T KOG0117|consen 235 LWGNAITVD---------------------------WAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVE 287 (506)
T ss_pred ecCCcceee---------------------------ccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceE
Confidence 111111000 00000000111223468899999999999999999999999999
Q ss_pred EEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCCccc
Q 021857 252 QMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYPFCC 302 (306)
Q Consensus 252 ~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~~~~ 302 (306)
+|+.++ .||||+|.++++|.+||+.|||++|.|. .+.| ++|-+=+.
T Consensus 288 RVkk~r----DYaFVHf~eR~davkAm~~~ngkeldG~-~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 288 RVKKPR----DYAFVHFAEREDAVKAMKETNGKELDGS-PIEVTLAKPVDKK 334 (506)
T ss_pred Eeeccc----ceeEEeecchHHHHHHHHHhcCceecCc-eEEEEecCChhhh
Confidence 999885 5999999999999999999999999966 7999 99876443
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2e-28 Score=206.28 Aligned_cols=167 Identities=16% Similarity=0.282 Sum_probs=133.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-----EEe---eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-----VNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-----v~~---~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
---|||+.|...++-|+|++.|.+| |.| |+- .++||||||.|-+.++|++|++.|||..|. +|.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pF----GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG---~R~I 134 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPF----GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG---RRTI 134 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccc----cccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec---ccee
Confidence 4569999999999999999999999 777 221 246799999999999999999999999998 7999
Q ss_pred EEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (306)
|-+||.-+... . .+.. .... +.+
T Consensus 135 RTNWATRKp~e-~----n~~~------ltfd-----------eV~----------------------------------- 157 (321)
T KOG0148|consen 135 RTNWATRKPSE-M----NGKP------LTFD-----------EVY----------------------------------- 157 (321)
T ss_pred eccccccCccc-c----CCCC------ccHH-----------HHh-----------------------------------
Confidence 99999443310 0 0000 0000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHH
Q 021857 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280 (306)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ 280 (306)
....+.+++|||+|++..+||++|++.|+.||.|.+||++.+ +||+||.|++.|+|.+||..
T Consensus 158 ----------------NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~--qGYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 158 ----------------NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD--QGYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred ----------------ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc--cceEEEEecchhhHHHHHHH
Confidence 011235899999999999999999999999999999999953 38999999999999999999
Q ss_pred hCCceeCCCCceeE-EeeC
Q 021857 281 LQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 281 lnG~~i~~~~~~~i-~~k~ 298 (306)
|||.+|.| +.+|- |+|.
T Consensus 220 mNntei~G-~~VkCsWGKe 237 (321)
T KOG0148|consen 220 MNNTEIGG-QLVRCSWGKE 237 (321)
T ss_pred hcCceeCc-eEEEEecccc
Confidence 99999994 46777 7763
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=6.8e-28 Score=230.60 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=136.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHh--cCceeCCCCCCeEEEE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDAL--QEMIFDAETKSVLHTE 123 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l--~g~~~~~~~g~~i~V~ 123 (306)
|.++|||+|||+++||++|+++|+.| |.|..+ -..||||||+|.+.++|++|++.| ++..+. |++|+|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~f----G~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~---g~~l~v~ 73 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPF----GPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIR---GQPAFFN 73 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEc---CeEEEEE
Confidence 46899999999999999999999999 999554 356899999999999999999975 677888 8999999
Q ss_pred EccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (306)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (306)
|+..+..... . . . ...
T Consensus 74 ~s~~~~~~~~-~--~-------------~-----~~~------------------------------------------- 89 (481)
T TIGR01649 74 YSTSQEIKRD-G--N-------------S-----DFD------------------------------------------- 89 (481)
T ss_pred ecCCcccccC-C--C-------------C-----ccc-------------------------------------------
Confidence 9964421110 0 0 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCC
Q 021857 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (306)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG 283 (306)
. .......+|||+||+..+|+++|+++|+.||.|.+|+|+++...++|||+|.+.++|.+|++.|||
T Consensus 90 ----~---------~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng 156 (481)
T TIGR01649 90 ----S---------AGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNG 156 (481)
T ss_pred ----C---------CCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcC
Confidence 0 000013569999999999999999999999999999999755557999999999999999999999
Q ss_pred ceeCCC-CceeE-EeeCC
Q 021857 284 AVIPSS-GSVGM-RIQYP 299 (306)
Q Consensus 284 ~~i~~~-~~~~i-~~k~~ 299 (306)
..|.++ ..++| |+|..
T Consensus 157 ~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 157 ADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred CcccCCceEEEEEEecCC
Confidence 999764 57899 99853
No 8
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=196.29 Aligned_cols=233 Identities=35% Similarity=0.507 Sum_probs=151.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCC-----cCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE-----KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~-----kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
....|||||.+||.++..-||..+|..|.|+||..++.... +-+|||.|.+..+|..|+..|||.+|+.+++.+|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 45699999999999999999999999999999999998532 3799999999999999999999999999999999
Q ss_pred EEEEccccchhccccccCC----ccccc---cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADT----NAYDQ---SKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYG 193 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~----~~~~~---~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (306)
+|+++|.+.+.++.+.... .+... .+-.+......+... ...+-..+..+... .+++.+-+...
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~----l~~p~~l~~~~~a~----al~~~~~t~~~- 181 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEG----LSDPDELQEPGNAD----ALKENDTTKSE- 181 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhcccc----ccCccccCCccccc----cCCCccccchh-
Confidence 9999998887665332110 00000 000000000000000 00000000000000 00000000000
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECC
Q 021857 194 VPPVQMPAPAPVPAPS---SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFED 270 (306)
Q Consensus 194 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~ 270 (306)
....+.+...++ ....-+.......|.||||-||..++||++|+.+|+.|.++..+||....+..+|||+|++
T Consensus 182 ----~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~ 257 (284)
T KOG1457|consen 182 ----ALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEE 257 (284)
T ss_pred ----hhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHH
Confidence 000000000000 0001111123345899999999999999999999999999999999864555899999999
Q ss_pred HHHHHHHHHHhCCceeCCCCc
Q 021857 271 VNSASSVHHNLQGAVIPSSGS 291 (306)
Q Consensus 271 ~~~A~~Ai~~lnG~~i~~~~~ 291 (306)
.+.|..||..|+|+.|..+.+
T Consensus 258 ~~~at~am~~lqg~~~s~~dr 278 (284)
T KOG1457|consen 258 IEQATDAMNHLQGNLLSSSDR 278 (284)
T ss_pred HHHHHHHHHHhhcceeccccC
Confidence 999999999999999976544
No 9
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.95 E-value=3.2e-27 Score=195.48 Aligned_cols=206 Identities=23% Similarity=0.318 Sum_probs=153.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHH----HHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQN----LLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~----~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
..++.||||+||+..+..++|++ +|+.| |.|++|. +.||.|||.|.+.+.|..|+..|+|+.++
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqf----G~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy--- 78 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQF----GKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY--- 78 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhh----CCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc---
Confidence 45677999999999999999999 77777 9887773 34799999999999999999999999999
Q ss_pred CCeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 117 KSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPP 196 (306)
Q Consensus 117 g~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (306)
|++++|.||+.+++..... .+...++.++.......... .+.+..+....++
T Consensus 79 gK~mriqyA~s~sdii~~~--~~~~v~~~~k~~~~~~~~~~----------~~~~~ng~~~~~~---------------- 130 (221)
T KOG4206|consen 79 GKPMRIQYAKSDSDIIAQA--PGTFVEKEKKINGEILARIK----------QPLDTNGHFYNMN---------------- 130 (221)
T ss_pred CchhheecccCccchhhcc--CceeccccCccccccccccC----------Ccccccccccccc----------------
Confidence 9999999999988855432 23333333332222211111 0000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHH
Q 021857 197 VQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276 (306)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~ 276 (306)
..+.++.......+++.+||+.|||..++.+.|..+|++|...++|+++. ..++.|||+|++...|..
T Consensus 131 -----------~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~ 198 (221)
T KOG4206|consen 131 -----------RMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASA 198 (221)
T ss_pred -----------cccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc-CCCceeEEecchhhhhHH
Confidence 00001111123456799999999999999999999999999999999995 556999999999999999
Q ss_pred HHHHhCCceeCCCCceeE-EeeC
Q 021857 277 VHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 277 Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
|.+.|+|+.|.-.+.|+| |++.
T Consensus 199 a~~~lq~~~it~~~~m~i~~a~K 221 (221)
T KOG4206|consen 199 AQQALQGFKITKKNTMQITFAKK 221 (221)
T ss_pred HhhhhccceeccCceEEecccCC
Confidence 999999999997889999 8763
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=7.6e-27 Score=222.72 Aligned_cols=167 Identities=19% Similarity=0.283 Sum_probs=134.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
+.+.++|||+|||..+|+++|+++|+.+ |.|..++ ..+|||||+|.+.++|.+||. |+|..|. |
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~----G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~---g 157 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKV----GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL---G 157 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC---C
Confidence 3457899999999999999999999999 8774432 246999999999999999997 9999998 8
Q ss_pred CeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (306)
Q Consensus 118 ~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (306)
++|.|.++......... .. ..
T Consensus 158 ~~i~v~~~~~~~~~~~~----------------~~------~~------------------------------------- 178 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAK----------------AA------TH------------------------------------- 178 (457)
T ss_pred eeeEEeecchhhhhhhh----------------cc------cc-------------------------------------
Confidence 99999876433211100 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHH
Q 021857 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNS 273 (306)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~ 273 (306)
. ....+..++|||+|||..+|+++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++
T Consensus 179 ----------~--------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 179 ----------Q--------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred ----------c--------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 0 00011267899999999999999999999999999999996543 3999999999999
Q ss_pred HHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 274 ASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 274 A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
|.+|++.|||+.|.| ..|+| |++.
T Consensus 241 A~~A~~~l~g~~i~g-~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAG-RPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECC-EEEEEEEccC
Confidence 999999999999985 58999 9764
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=3.8e-26 Score=220.76 Aligned_cols=188 Identities=18% Similarity=0.258 Sum_probs=132.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCC--------cCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGY--------EASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~--------~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~ 114 (306)
.....++|||+|||+.+|+++|+++|+.++.. .+.|+.+ ...+|||||+|.+.++|..||. |+|..|.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~- 248 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYS- 248 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEee-
Confidence 34568999999999999999999999986321 1234333 3568999999999999999995 9999998
Q ss_pred CCCCeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 115 ETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGV 194 (306)
Q Consensus 115 ~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (306)
|+.|+|...+....... .. ..... ..+....
T Consensus 249 --g~~l~v~r~~~~~~~~~-----~~----------------~~~~~-----~~~~~~~--------------------- 279 (509)
T TIGR01642 249 --NVFLKIRRPHDYIPVPQ-----IT----------------PEVSQ-----KNPDDNA--------------------- 279 (509)
T ss_pred --CceeEecCccccCCccc-----cC----------------CCCCC-----CCCcccc---------------------
Confidence 89998864422210000 00 00000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECC
Q 021857 195 PPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFED 270 (306)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~ 270 (306)
................++|||+|||..+|+++|+++|+.||.|..++|+.+. .+|||||+|.+
T Consensus 280 -------------~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 280 -------------KNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred -------------cccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECC
Confidence 0000000000011235789999999999999999999999999999998542 35999999999
Q ss_pred HHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 271 VNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 271 ~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.++|..||+.|||..|.|. .|.| |+.
T Consensus 347 ~~~a~~A~~~l~g~~~~~~-~l~v~~a~ 373 (509)
T TIGR01642 347 PSVTDVAIAALNGKDTGDN-KLHVQRAC 373 (509)
T ss_pred HHHHHHHHHHcCCCEECCe-EEEEEECc
Confidence 9999999999999999855 6888 763
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=7.9e-27 Score=223.17 Aligned_cols=227 Identities=18% Similarity=0.184 Sum_probs=135.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
...++|||+|||+++||++|+++|+.+ |.|+.++ .+||||||+|.+.++|++||+.||+..+.. |+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~----G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~--Gr~ 129 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKA----GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP--GRL 129 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhh----CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecC--Ccc
Confidence 346899999999999999999999999 8885442 357999999999999999999999999853 788
Q ss_pred EEEEEccccchhc-cccccCCcccc----ccc-------cccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVK-RGIVADTNAYD----QSK-------RLRTGGDYTHTGYSAPS---PFHAPPAPVWGPHGYMAPPPP 184 (306)
Q Consensus 120 i~V~~a~~~~~~~-~~~~~~~~~~~----~~k-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 184 (306)
|.|.++..+...- ...-.+.+..+ -.+ ......... ....... .+.............+ ..
T Consensus 130 l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~-kgKnRGFAFVeF~s~edAa~AirkL~---~g 205 (578)
T TIGR01648 130 LGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAAD-KKKNRGFAFVEYESHRAAAMARRKLM---PG 205 (578)
T ss_pred ccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccc-cCccCceEEEEcCCHHHHHHHHHHhh---cc
Confidence 8777664322100 00000000000 000 000000000 0000000 0000000000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccC--CCceEEEEEecCCcc
Q 021857 185 PYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVLRQERHT 262 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~--G~i~~vkl~~~~~~g 262 (306)
.. ...+ ....+. ................++|||+||++++|+|+|+++|+.| |.|++|+++. +
T Consensus 206 ki-~l~G---------r~I~Vd-wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----g 270 (578)
T TIGR01648 206 RI-QLWG---------HVIAVD-WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----D 270 (578)
T ss_pred ce-EecC---------ceEEEE-eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----C
Confidence 00 0000 000000 0000000001112246789999999999999999999999 9999998874 6
Q ss_pred eEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 263 VCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 263 ~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
||||+|++.++|.+||+.|||.+|.|. .|+| |++.+
T Consensus 271 fAFVeF~s~e~A~kAi~~lnG~~i~Gr-~I~V~~Akp~ 307 (578)
T TIGR01648 271 YAFVHFEDREDAVKAMDELNGKELEGS-EIEVTLAKPV 307 (578)
T ss_pred eEEEEeCCHHHHHHHHHHhCCCEECCE-EEEEEEccCC
Confidence 999999999999999999999999954 7999 99764
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=2.8e-26 Score=224.07 Aligned_cols=149 Identities=19% Similarity=0.309 Sum_probs=127.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
+|||+|||.++||++|+++|+.| |.|+.|+ .++|||||+|.+.++|++|++.|++..+. |+.|+|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~----G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~---gk~i~i 74 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPF----GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG---GKPIRI 74 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeeEEe
Confidence 79999999999999999999999 8885442 23599999999999999999999999998 899999
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
.|+.......+
T Consensus 75 ~~s~~~~~~~~--------------------------------------------------------------------- 85 (562)
T TIGR01628 75 MWSQRDPSLRR--------------------------------------------------------------------- 85 (562)
T ss_pred ecccccccccc---------------------------------------------------------------------
Confidence 99732211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC---CcceEEEEECCHHHHHHHHH
Q 021857 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHH 279 (306)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~---~~g~aFV~F~~~~~A~~Ai~ 279 (306)
....+|||+||+.++|+++|+++|+.||.|.+|+++.+. ++|||||+|++.++|.+|++
T Consensus 86 ------------------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~ 147 (562)
T TIGR01628 86 ------------------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQ 147 (562)
T ss_pred ------------------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHH
Confidence 013469999999999999999999999999999998654 34999999999999999999
Q ss_pred HhCCceeCCCCceeE
Q 021857 280 NLQGAVIPSSGSVGM 294 (306)
Q Consensus 280 ~lnG~~i~~~~~~~i 294 (306)
.|||..+.+. .+.|
T Consensus 148 ~lng~~~~~~-~i~v 161 (562)
T TIGR01628 148 KVNGMLLNDK-EVYV 161 (562)
T ss_pred HhcccEecCc-eEEE
Confidence 9999999854 6777
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.9e-26 Score=204.24 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=133.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---e-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
...-+|||+.+|..++|.||+++|++| |.|..| | .++||+||.|.+.++|.+|+..|++.+.....-.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~y----g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKY----GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHh----CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 346789999999999999999999999 777433 1 2369999999999999999999999877654458
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
++.|.|+.....+.
T Consensus 108 pvqvk~Ad~E~er~------------------------------------------------------------------ 121 (510)
T KOG0144|consen 108 PVQVKYADGERERI------------------------------------------------------------------ 121 (510)
T ss_pred ceeecccchhhhcc------------------------------------------------------------------
Confidence 99999985554321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSAS 275 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~ 275 (306)
+..+.|||+-|+..+||.+++++|++||.|+++.|+++.. +|||||+|.+.+.|.
T Consensus 122 ----------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~ 179 (510)
T KOG0144|consen 122 ----------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAV 179 (510)
T ss_pred ----------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHH
Confidence 0245699999999999999999999999999999998654 399999999999999
Q ss_pred HHHHHhCC-ceeCCC-CceeE-EeeC
Q 021857 276 SVHHNLQG-AVIPSS-GSVGM-RIQY 298 (306)
Q Consensus 276 ~Ai~~lnG-~~i~~~-~~~~i-~~k~ 298 (306)
.||++||| +.+.|. .+|.| |+-.
T Consensus 180 ~Aika~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 180 AAIKALNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred HHHHhhccceeeccCCCceEEEeccc
Confidence 99999999 567764 56667 8754
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.7e-26 Score=190.51 Aligned_cols=158 Identities=17% Similarity=0.283 Sum_probs=136.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
+...+|.|.-||..+|+|||+.+|... |+|..++ .+-|||||.|-+.++|++|+..|||.++. .+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~Si----GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~K 111 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSI----GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NK 111 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcc----cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cc
Confidence 446789999999999999999999999 8884332 12399999999999999999999999998 59
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
+|+|.|+++.+..++
T Consensus 112 TIKVSyARPSs~~Ik----------------------------------------------------------------- 126 (360)
T KOG0145|consen 112 TIKVSYARPSSDSIK----------------------------------------------------------------- 126 (360)
T ss_pred eEEEEeccCChhhhc-----------------------------------------------------------------
Confidence 999999988877665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSA 274 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A 274 (306)
...|||++||..+|..||.++|++||.|..-||..+. .+|.|||.|+...+|
T Consensus 127 ------------------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 127 ------------------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred ------------------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 2349999999999999999999999998766666433 359999999999999
Q ss_pred HHHHHHhCCceeCC-CCceeE-EeeCCc
Q 021857 275 SSVHHNLQGAVIPS-SGSVGM-RIQYPF 300 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~-~~~~~i-~~k~~~ 300 (306)
+.||..|||..-.| ..++.| |+.||-
T Consensus 183 e~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 183 EEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 99999999988776 588999 999984
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=3.1e-25 Score=216.74 Aligned_cols=177 Identities=18% Similarity=0.255 Sum_probs=135.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeC-CCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFD-AETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~-~~~g~ 118 (306)
...++|||+||+.++|+++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|+|..+. ...|+
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~f----G~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~ 251 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKF----GEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGK 251 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhc----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccce
Confidence 346789999999999999999999999 8874442 23699999999999999999999999985 11257
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|.|.++..+....... ..+......
T Consensus 252 ~l~v~~a~~k~er~~~~--------~~~~~~~~~---------------------------------------------- 277 (562)
T TIGR01628 252 KLYVGRAQKRAEREAEL--------RRKFEELQQ---------------------------------------------- 277 (562)
T ss_pred eeEeecccChhhhHHHH--------HhhHHhhhh----------------------------------------------
Confidence 88888775543321100 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSAS 275 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~ 275 (306)
. ........+|||+||+..+|+++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.
T Consensus 278 ---------~--------~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~ 340 (562)
T TIGR01628 278 ---------E--------RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEAN 340 (562)
T ss_pred ---------h--------hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHH
Confidence 0 00011256799999999999999999999999999999997642 499999999999999
Q ss_pred HHHHHhCCceeCCCCceeE-EeeCC
Q 021857 276 SVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 276 ~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
+|+..|||+.|.| +++.| |++..
T Consensus 341 ~A~~~~~g~~~~g-k~l~V~~a~~k 364 (562)
T TIGR01628 341 RAVTEMHGRMLGG-KPLYVALAQRK 364 (562)
T ss_pred HHHHHhcCCeeCC-ceeEEEeccCc
Confidence 9999999999985 58999 88754
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=179.32 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=132.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.+...||||+||+..+|++-|.++|-.. |.+|++. ..+|||||+|.++|+|+.|+..||..+|+ |
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqa----gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY---g 78 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQA----GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY---G 78 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhc----CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc---C
Confidence 4567899999999999999999999999 9998874 23699999999999999999999999999 9
Q ss_pred CeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (306)
Q Consensus 118 ~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (306)
|+|+|.-+.....+-.
T Consensus 79 rpIrv~kas~~~~nl~---------------------------------------------------------------- 94 (203)
T KOG0131|consen 79 RPIRVNKASAHQKNLD---------------------------------------------------------------- 94 (203)
T ss_pred ceeEEEeccccccccc----------------------------------------------------------------
Confidence 9999987641110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceE-EEEEecCC----cceEEEEECCHH
Q 021857 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLRQER----HTVCFIEFEDVN 272 (306)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~-vkl~~~~~----~g~aFV~F~~~~ 272 (306)
-+..|||+||...++|..|.++|+.||.|.+ =+++++.. +|||||.|++.+
T Consensus 95 ------------------------vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 95 ------------------------VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred ------------------------ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 1345999999999999999999999998765 35554433 489999999999
Q ss_pred HHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 273 SASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 273 ~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.+.+|+..|||+.+.++ ++.| |++..
T Consensus 151 asd~ai~s~ngq~l~nr-~itv~ya~k~ 177 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNR-PITVSYAFKK 177 (203)
T ss_pred HHHHHHHHhccchhcCC-ceEEEEEEec
Confidence 99999999999999955 7888 87654
No 18
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=183.12 Aligned_cols=257 Identities=19% Similarity=0.253 Sum_probs=154.7
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---e----CCcCeEEEEeCCHHHHHHHH
Q 021857 32 PPPPVPYDNTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K----GEKPMGFALFSTAQLAVAAK 104 (306)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~----~~kg~aFV~F~~~~~A~~Al 104 (306)
++..+.|+..+... ...|+||||-|...-+|||++++|..| |.|-.+ + .+||+|||.|.+..+|+.|+
T Consensus 3 rpiqvkpadsesrg-~~drklfvgml~kqq~e~dvrrlf~pf----G~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 3 RPIQVKPADSESRG-GDDRKLFVGMLNKQQSEDDVRRLFQPF----GNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCccccccccccCC-ccchhhhhhhhcccccHHHHHHHhccc----CCcceeEEecCCCCCCCCceEEEeccchHHHHHH
Confidence 34444555544322 367999999999999999999999999 887433 2 45899999999999999999
Q ss_pred HHhcCceeCCCCCCeEEEEEccccch--hccccccC---Cccccc-----------------------cc-cc-cC----
Q 021857 105 DALQEMIFDAETKSVLHTEMAKKNLF--VKRGIVAD---TNAYDQ-----------------------SK-RL-RT---- 150 (306)
Q Consensus 105 ~~l~g~~~~~~~g~~i~V~~a~~~~~--~~~~~~~~---~~~~~~-----------------------~k-~~-~~---- 150 (306)
+.|+|..-.......|.|.|+..... ..|-+++. +..... .. .. ..
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 99999987554458999999975543 22211110 000000 00 00 00
Q ss_pred -----------------CCCCCCCCCCCCCCCCCC--C----CCCCCCCCCCCCCCCCC----------CCCCCCCCCCC
Q 021857 151 -----------------GGDYTHTGYSAPSPFHAP--P----APVWGPHGYMAPPPPPY----------DPYGGYGVPPV 197 (306)
Q Consensus 151 -----------------~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 197 (306)
.....-+.....++.... . ....+..++...++.+. +....|+....
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 000000000000000000 0 01122222222221111 11111111111
Q ss_pred CCCCCCCC----------CCCCCCCCC------------CCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEE
Q 021857 198 QMPAPAPV----------PAPSSYVPV------------QNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKV 255 (306)
Q Consensus 198 ~~~~~~~~----------~~~~~~~~~------------~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl 255 (306)
....+... ..+..+.++ +....+++++.|||++||.+..+.||..+|-.||.|++.|+
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 11111110 011111111 12345678999999999999999999999999999999998
Q ss_pred Eec----CCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 256 LRQ----ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 256 ~~~----~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
+-+ .++.|+||.|+|+.+|+.||.+|||+.|+ =+|+||
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG-MKRLKV 359 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG-MKRLKV 359 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhh-hhhhhh
Confidence 843 45699999999999999999999999998 568988
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=5.7e-24 Score=205.58 Aligned_cols=179 Identities=20% Similarity=0.199 Sum_probs=128.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---e-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+.+|+++|+++|+.| |.|..+ + .++|||||+|.+.++|..|++.|||..|+ |+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~---~~ 365 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESF----GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG---DN 365 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---Ce
Confidence 457899999999999999999999999 777332 1 24799999999999999999999999998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|.|.++.............+ ........
T Consensus 366 ~l~v~~a~~~~~~~~~~~~~~--------------------~~~~~~~~------------------------------- 394 (509)
T TIGR01642 366 KLHVQRACVGANQATIDTSNG--------------------MAPVTLLA------------------------------- 394 (509)
T ss_pred EEEEEECccCCCCCCcccccc--------------------cccccccc-------------------------------
Confidence 999999854322111000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCC--C--------CHHHHHHhhccCCCceEEEEEecC-------Cc
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGES--I--------NEEELRGLFSAQPGFKQMKVLRQE-------RH 261 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~--~--------t~e~L~~~F~~~G~i~~vkl~~~~-------~~ 261 (306)
... ..........++++|+|.||... + ..++|+++|+.||.|++|+|..+. ..
T Consensus 395 ---------~~~-~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~ 464 (509)
T TIGR01642 395 ---------KAL-SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGV 464 (509)
T ss_pred ---------ccc-hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCc
Confidence 000 00000012235789999999631 1 136799999999999999998531 13
Q ss_pred ceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 262 TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 262 g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
|++||+|.+.++|.+||.+|||..|.| ..|.|
T Consensus 465 G~~fV~F~~~e~A~~A~~~lnGr~~~g-r~v~~ 496 (509)
T TIGR01642 465 GKVFLEYADVRSAEKAMEGMNGRKFND-RVVVA 496 (509)
T ss_pred ceEEEEECCHHHHHHHHHHcCCCEECC-eEEEE
Confidence 899999999999999999999999985 46888
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.8e-23 Score=198.20 Aligned_cols=230 Identities=14% Similarity=0.189 Sum_probs=133.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
.++|||+|||..+|+++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~----G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~---g~~i 258 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPF----GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA---GRPI 258 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC---CEEE
Confidence 6899999999999999999999999 8884441 24699999999999999999999999998 8999
Q ss_pred EEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPY------DPYGGYGV 194 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 194 (306)
.|.|+......... ...................... ..... ....+...+.... ++.. ........
T Consensus 259 ~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 330 (457)
T TIGR01622 259 KVGYAQDSTYLLDA---ANTFEDIDKQQQMGKNLNTEER--EQLME--KLDRDDGDGGLLI-PGTGSKIALMQKLQRDGI 330 (457)
T ss_pred EEEEccCCCccccc---hhhhccccccccCCcCCCccch--HHHHH--hhccCCCCccccC-CCccchhhhhcccccccc
Confidence 99998633211110 0000000000000000000000 00000 0000000000000 0000 00000000
Q ss_pred CCCCCC-CCCCCCCC--CCCCCCCCCCCCCCCCEEEEcCCCCCCC----------HHHHHHhhccCCCceEEEEEecCCc
Q 021857 195 PPVQMP-APAPVPAP--SSYVPVQNTKDNPPCNTLFIGNLGESIN----------EEELRGLFSAQPGFKQMKVLRQERH 261 (306)
Q Consensus 195 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~tLfV~NLp~~~t----------~e~L~~~F~~~G~i~~vkl~~~~~~ 261 (306)
...... ........ .............+.++|+|.||....+ .++|++.|++||.|++|.|......
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~ 410 (457)
T TIGR01622 331 IDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSA 410 (457)
T ss_pred ccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCc
Confidence 000000 00000000 0000011111234678999999955433 3689999999999999999865556
Q ss_pred ceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 262 TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 262 g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
|++||+|.+.++|.+|+++|||..+.|. .|.|
T Consensus 411 G~~fV~F~~~e~A~~A~~~lnGr~f~gr-~i~~ 442 (457)
T TIGR01622 411 GKIYLKFSSVDAALAAFQALNGRYFGGK-MITA 442 (457)
T ss_pred eeEEEEECCHHHHHHHHHHhcCcccCCe-EEEE
Confidence 9999999999999999999999999955 6887
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.1e-24 Score=185.46 Aligned_cols=145 Identities=19% Similarity=0.297 Sum_probs=132.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccccc
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~~~ 129 (306)
-+|||+|||..+++.+|+.+|+.| |.++.+.--|.||||+.++...|+.|++.|+|..|. |..|.|+-+|.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~y----gkVlECDIvKNYgFVHiEdktaaedairNLhgYtLh---g~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQY----GKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLH---GVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhh----CceEeeeeecccceEEeecccccHHHHhhcccceec---ceEEEEEeccccC
Confidence 379999999999999999999999 999877656789999999999999999999999999 9999999886663
Q ss_pred hhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 130 FVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPS 209 (306)
Q Consensus 130 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (306)
+
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 210 SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 210 ~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
..++|+|+||.+.++.++|+..|+.||.|.+++|+. +|+||+|+-.++|..|+..|||.+++|
T Consensus 77 ------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~g- 139 (346)
T KOG0109|consen 77 ------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQG- 139 (346)
T ss_pred ------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhccccccccc-
Confidence 145699999999999999999999999999999995 799999999999999999999999994
Q ss_pred CceeE-Eee
Q 021857 290 GSVGM-RIQ 297 (306)
Q Consensus 290 ~~~~i-~~k 297 (306)
++|.| .+-
T Consensus 140 k~m~vq~st 148 (346)
T KOG0109|consen 140 KRMHVQLST 148 (346)
T ss_pred ceeeeeeec
Confidence 58998 653
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.3e-23 Score=174.88 Aligned_cols=218 Identities=14% Similarity=0.149 Sum_probs=139.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
-...+|||++||..+|..||..+|+.| |.|+..+ -+||.|||.|+..++|++|+..|||.+=. .+-.
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~f----GrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~-g~te 199 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPF----GRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS-GCTE 199 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHh----hhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC-CCCC
Confidence 346799999999999999999999999 9885432 24899999999999999999999998753 2358
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPP--PPPYDPYGGYGVPP 196 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 196 (306)
+|.|.|+...+.... +..-...+.... .....+. ....+..... +++......+.+.-
T Consensus 200 pItVKFannPsq~t~-~a~ls~ly~sp~------------rr~~Gp~-------hh~~~r~r~~~~~~~~~~~~rfsP~~ 259 (360)
T KOG0145|consen 200 PITVKFANNPSQKTN-QALLSQLYQSPA------------RRYGGPM-------HHQAQRFRLDNLLNPHAAQARFSPMT 259 (360)
T ss_pred CeEEEecCCcccccc-hhhhHHhhcCcc------------ccCCCcc-------cchhhhhccccccchhhhhccCCCcc
Confidence 999999854432111 000000000000 0000000 0000000000 00000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHH
Q 021857 197 VQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVN 272 (306)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~ 272 (306)
.+..... ....-.........|||+||..+++|.-|+++|..||.|..||++++.. +|||||++.+.+
T Consensus 260 ----~d~m~~l----~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYd 331 (360)
T KOG0145|consen 260 ----IDGMSGL----AGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 331 (360)
T ss_pred ----cccccee----eeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchH
Confidence 0000000 0000000111367899999999999999999999999999999998755 499999999999
Q ss_pred HHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 273 SASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 273 ~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
+|..||..|||+.+.++ .+.| |--+
T Consensus 332 EAamAi~sLNGy~lg~r-vLQVsFKtn 357 (360)
T KOG0145|consen 332 EAAMAIASLNGYRLGDR-VLQVSFKTN 357 (360)
T ss_pred HHHHHHHHhcCccccce-EEEEEEecC
Confidence 99999999999999944 7888 7544
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.1e-22 Score=186.22 Aligned_cols=230 Identities=15% Similarity=0.141 Sum_probs=136.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
+--+|.|+|||+.+.+++|+.+|+.| |.++.|. +..|||||.|....+|..||+.+||..|+ ||+|
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~----G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~---gR~V 188 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNF----GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID---GRPV 188 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhc----ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec---Ccee
Confidence 46689999999999999999999999 9997662 23599999999999999999999999999 9999
Q ss_pred EEEEccccchhccccccCCccccccccccCCC--CCCCCC-C---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGG--DYTHTG-Y---SAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGV 194 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (306)
.|.||-++......++.+.............. ...+.. . ...+..... ....+...... .+....
T Consensus 189 AVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ede-Ee~D~~se~~e--------e~~~~E 259 (678)
T KOG0127|consen 189 AVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDE-EETDGNSEAFE--------EGEESE 259 (678)
T ss_pred EEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccc-ccccccchhhh--------cccccc
Confidence 99999766543322211100000000000000 000000 0 000000000 00000000000 000000
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCC---CCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEE
Q 021857 195 PPVQMPAPAP-VPAPSSYVPVQN---TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFI 266 (306)
Q Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV 266 (306)
.......+.. +.-..+....+. ........||||+|||+++|+|+|.+.|++||.|.++.|+.+.. +|.|||
T Consensus 260 ee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv 339 (678)
T KOG0127|consen 260 EEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFV 339 (678)
T ss_pred ccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEE
Confidence 0000000000 000000011111 11222469999999999999999999999999999999995443 499999
Q ss_pred EECCHHHHHHHHHHh-----CC-ceeCCCCceeE
Q 021857 267 EFEDVNSASSVHHNL-----QG-AVIPSSGSVGM 294 (306)
Q Consensus 267 ~F~~~~~A~~Ai~~l-----nG-~~i~~~~~~~i 294 (306)
.|.+..+|..||++. .| +.|.|. .++|
T Consensus 340 ~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR-~Lkv 372 (678)
T KOG0127|consen 340 KFKTQIAAQNCIEAASPASEDGSVLLDGR-LLKV 372 (678)
T ss_pred EeccHHHHHHHHHhcCccCCCceEEEecc-EEee
Confidence 999999999999987 34 555543 5666
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.8e-23 Score=189.96 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=134.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE---EEe--e---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ---VNY--K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i---v~~--~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
+.||||++||+++|.++|.++|+.+ |.| +.+ + ..||||||.|+=.+++++|+..+++..|. |+.|
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~v----GPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~---Gr~l 77 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYV----GPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE---GRIL 77 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcc----cCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc---ceec
Confidence 3799999999999999999999988 555 222 2 23799999999999999999999999998 9999
Q ss_pred EEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (306)
+|..++.+....... .+......+ ....
T Consensus 78 ~v~~A~~R~r~e~~~--~~e~~~veK---~~~q----------------------------------------------- 105 (678)
T KOG0127|consen 78 NVDPAKKRARSEEVE--KGENKAVEK---PIEQ----------------------------------------------- 105 (678)
T ss_pred ccccccccccchhcc--cccchhhhc---cccc-----------------------------------------------
Confidence 999997665433100 000000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc---ceEEEEECCHHHHHHH
Q 021857 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH---TVCFIEFEDVNSASSV 277 (306)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~---g~aFV~F~~~~~A~~A 277 (306)
..........+...|.|+|||+.+.+++|..+|+.||.|.+|.|.++..+ |||||+|.+..+|..|
T Consensus 106 -----------~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~A 174 (678)
T KOG0127|consen 106 -----------KRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKA 174 (678)
T ss_pred -----------CCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHH
Confidence 00000001113567999999999999999999999999999999865443 9999999999999999
Q ss_pred HHHhCCceeCCCCceeE-Ee
Q 021857 278 HHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 278 i~~lnG~~i~~~~~~~i-~~ 296 (306)
|+.|||..|.|. ++.| |+
T Consensus 175 l~~~N~~~i~gR-~VAVDWA 193 (678)
T KOG0127|consen 175 LEFFNGNKIDGR-PVAVDWA 193 (678)
T ss_pred HHhccCceecCc-eeEEeee
Confidence 999999999966 7888 75
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=7.9e-22 Score=176.07 Aligned_cols=94 Identities=23% Similarity=0.259 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe-------eCCcCeEEEEeCCHHHHHHHHH
Q 021857 33 PPPVPYDNTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-------KGEKPMGFALFSTAQLAVAAKD 105 (306)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~-------~~~kg~aFV~F~~~~~A~~Al~ 105 (306)
+..+.++..++..-.+.++||||-|+..+||.|++++|++| |.|-++ +.+||||||.|+++|.|..|++
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~f----G~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRF----GHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhh----CccchhhheecccccccceeEEEEehHHHHHHHHH
Confidence 34455555555444568999999999999999999999999 888443 2468999999999999999999
Q ss_pred HhcCceeCCCCCCeEEEEEccccch
Q 021857 106 ALQEMIFDAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 106 ~l~g~~~~~~~g~~i~V~~a~~~~~ 130 (306)
.|||..-...|..+|.|.||..+..
T Consensus 184 a~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred hhccceeeccCCCceEEEecccCCC
Confidence 9999865444569999999976654
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.3e-20 Score=172.77 Aligned_cols=139 Identities=21% Similarity=0.279 Sum_probs=121.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
..|||| +++||.+|.+.|+.+ |.++.++ ++-|||||.|.+.++|++||+.||...+. |++|+|-|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~----~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~---~~~~rim~ 71 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPA----GPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLK---GKPIRIMW 71 (369)
T ss_pred CceecC---CcCChHHHHHHhccc----CCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccC---CcEEEeeh
Confidence 479999 999999999999999 8875543 44599999999999999999999999998 89999998
Q ss_pred ccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (306)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
+ .+
T Consensus 72 s------~r----------------------------------------------------------------------- 74 (369)
T KOG0123|consen 72 S------QR----------------------------------------------------------------------- 74 (369)
T ss_pred h------cc-----------------------------------------------------------------------
Confidence 7 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc--ceEEEEECCHHHHHHHHHHhC
Q 021857 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH--TVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~--g~aFV~F~~~~~A~~Ai~~ln 282 (306)
..+.|||.||+.++|..+|.++|+.||.|.+||++.+.++ || ||+|+++++|.+||+.||
T Consensus 75 -----------------d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 75 -----------------DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred -----------------CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc
Confidence 0112999999999999999999999999999999986654 88 999999999999999999
Q ss_pred CceeCCCCceeE
Q 021857 283 GAVIPSSGSVGM 294 (306)
Q Consensus 283 G~~i~~~~~~~i 294 (306)
|..+.+. .+-|
T Consensus 137 g~ll~~k-ki~v 147 (369)
T KOG0123|consen 137 GMLLNGK-KIYV 147 (369)
T ss_pred CcccCCC-eeEE
Confidence 9999954 5655
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=5.6e-21 Score=180.06 Aligned_cols=160 Identities=18% Similarity=0.258 Sum_probs=130.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e--C-------CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K--G-------EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~--~-------~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
+|||+||++++|.++|...|... |.|+.+ . . +.|||||+|.+.++|+.|++.|+|..|+ |+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld---GH~ 589 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQ----GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD---GHK 589 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhc----CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec---Cce
Confidence 39999999999999999999998 888554 1 1 2399999999999999999999999999 999
Q ss_pred EEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 120 i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
|.|.++..+....- + .+
T Consensus 590 l~lk~S~~k~~~~~-----g-----K~----------------------------------------------------- 606 (725)
T KOG0110|consen 590 LELKISENKPASTV-----G-----KK----------------------------------------------------- 606 (725)
T ss_pred EEEEeccCcccccc-----c-----cc-----------------------------------------------------
Confidence 99999962111000 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~ 275 (306)
......++.|+|+|||+..+..+++.+|+.||.|++|+|.-..+ .|||||+|-++++|.
T Consensus 607 -----------------~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~ 669 (725)
T KOG0110|consen 607 -----------------KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAK 669 (725)
T ss_pred -----------------cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHH
Confidence 00111256799999999999999999999999999999984312 399999999999999
Q ss_pred HHHHHhCCceeCCCCceeE-EeeC
Q 021857 276 SVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 276 ~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
+|+.+|.+..+.|+ ++-+ |+++
T Consensus 670 nA~~al~STHlyGR-rLVLEwA~~ 692 (725)
T KOG0110|consen 670 NAFDALGSTHLYGR-RLVLEWAKS 692 (725)
T ss_pred HHHHhhcccceech-hhheehhcc
Confidence 99999999999965 6777 9876
No 28
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=2.4e-19 Score=159.31 Aligned_cols=188 Identities=18% Similarity=0.231 Sum_probs=140.9
Q ss_pred CceEEEcCCC-CCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 49 VRTIFITGLP-DDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 49 ~~~LfV~nLp-~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
+..|.|.||. +.+|.|-|..+|..| |+|.+|+ +.+-.|+|+|.|...|+.|++.|+|..|+ |+.|+|.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvY----GdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~---gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVY----GDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLY---GKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhh----cceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceec---CceEEEee
Confidence 6899999997 579999999999999 9997764 45689999999999999999999999999 89999999
Q ss_pred ccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (306)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
+|+.......-+++.... .. ++..++.. .+
T Consensus 370 SKH~~vqlp~egq~d~gl------------T~-------dy~~spLh-------------------rf------------ 399 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGL------------TK-------DYGNSPLH-------------------RF------------ 399 (492)
T ss_pred ccCccccCCCCCCccccc------------cc-------cCCCCchh-------------------hc------------
Confidence 987764222100000000 00 00000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCce-EEEEEecCCcceEEEEECCHHHHHHHHHHhCC
Q 021857 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFK-QMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (306)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~-~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG 283 (306)
+.++ .-......||+.+|.+.|+|.+++||+|+++|..-|..+ -.+... +.+.+|.+++++.++|..|+..||+
T Consensus 400 -kkpg---sKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-kd~kmal~q~~sveeA~~ali~~hn 474 (492)
T KOG1190|consen 400 -KKPG---SKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-KDRKMALPQLESVEEAIQALIDLHN 474 (492)
T ss_pred -cCcc---cccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC-CCcceeecccCChhHhhhhcccccc
Confidence 0000 001122456789999999999999999999999998754 455554 4447999999999999999999999
Q ss_pred ceeCCCCceeE-EeeC
Q 021857 284 AVIPSSGSVGM-RIQY 298 (306)
Q Consensus 284 ~~i~~~~~~~i-~~k~ 298 (306)
+.+.++..++| |+|.
T Consensus 475 h~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 475 HYLGENHHLRVSFSKS 490 (492)
T ss_pred ccCCCCceEEEEeecc
Confidence 99999989999 9985
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=5.5e-18 Score=162.91 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=66.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
..++|||+||++++++++|+++|+.| |.|+.++ ..||||||+|.+.++|.+|++.|||+.|. |+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~F----G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg---Gr~ 275 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQY 275 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC---CeE
Confidence 46799999999999999999999999 8885442 24799999999999999999999999999 999
Q ss_pred EEEEEcccc
Q 021857 120 LHTEMAKKN 128 (306)
Q Consensus 120 i~V~~a~~~ 128 (306)
|+|.++...
T Consensus 276 LrV~kAi~p 284 (612)
T TIGR01645 276 LRVGKCVTP 284 (612)
T ss_pred EEEEecCCC
Confidence 999998643
No 30
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.5e-20 Score=161.79 Aligned_cols=167 Identities=10% Similarity=0.209 Sum_probs=131.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
.|+||||.+.+.+.||.||..|..| |.|..|. +.||||||+|+-.|.|+.|++.|||..+. ||.|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PF----GPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG---GRNi 185 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPF----GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNI 185 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCC----CCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc---Cccc
Confidence 6899999999999999999999999 9994442 34799999999999999999999999998 8999
Q ss_pred EEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (306)
+|..-..-. .. ....+..
T Consensus 186 KVgrPsNmp---QA----QpiID~v------------------------------------------------------- 203 (544)
T KOG0124|consen 186 KVGRPSNMP---QA----QPIIDMV------------------------------------------------------- 203 (544)
T ss_pred cccCCCCCc---cc----chHHHHH-------------------------------------------------------
Confidence 887320000 00 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHH
Q 021857 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASS 276 (306)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~ 276 (306)
......-.+|||..+..+.+|+||+.+|+.||.|+++++-+.. ++|||||+|.+.++-..
T Consensus 204 ----------------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 204 ----------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred ----------------HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 0000013569999999999999999999999999999998643 24999999999999999
Q ss_pred HHHHhCCceeCCCCceeE-EeeCCcc
Q 021857 277 VHHNLQGAVIPSSGSVGM-RIQYPFC 301 (306)
Q Consensus 277 Ai~~lnG~~i~~~~~~~i-~~k~~~~ 301 (306)
||..||=+.++|. -++| -+-.|.-
T Consensus 268 AiasMNlFDLGGQ-yLRVGk~vTPP~ 292 (544)
T KOG0124|consen 268 AIASMNLFDLGGQ-YLRVGKCVTPPD 292 (544)
T ss_pred Hhhhcchhhcccc-eEecccccCCCc
Confidence 9999999999965 5888 6666653
No 31
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.81 E-value=9e-18 Score=147.77 Aligned_cols=231 Identities=17% Similarity=0.210 Sum_probs=150.0
Q ss_pred CCCCceEEEcCCC--CCCCHHHHHHHHhhcCCCcCcEEEe---eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 46 HDEVRTIFITGLP--DDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 46 ~~~~~~LfV~nLp--~~~tee~L~~~f~~~~~~~g~iv~~---~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
..++..|.+.=|+ +.+|.|-|..+.... |.+++| +++--.|+|+|++.+.|++|.+.|||.+|+.. ..+|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~----GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsG-CCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQ----GKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSG-CCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCC----CceEEEEEEeccceeeEEeechhHHHHHHHhhccccccccc-ceeE
Confidence 3567888877776 579999888877766 776444 56668899999999999999999999999863 3799
Q ss_pred EEEEccccchhccccccCCcccccccccc-CCCCCCCCCCC-CCCCCCCCCCCCCC--CCCCCC------CCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLR-TGGDYTHTGYS-APSPFHAPPAPVWG--PHGYMA------PPPPPYDPYG 190 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~ 190 (306)
+|+|||+..-+......+.+++....... ......+-... .+...... ...|+ ..+|.. +.++|...+.
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~-pss~~G~h~~y~sg~~~~p~~~~P~r~~~ 270 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYH-PSSRGGGHSGYYSGDRHGPPHPPPSRYRD 270 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCC-hhhcCCCCCCCcccccCCCCCCCCCCCcc
Confidence 99999988764443333444443322211 11111100000 00011000 11122 111111 0011111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCceEEEEEecCCcceEEEEEC
Q 021857 191 GYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFE 269 (306)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~-~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~ 269 (306)
.+-.. + . -.......++.++.|.+|+. .++.+.|..+|+.||+|.+|++|. .+.|.|+|++.
T Consensus 271 ~~~~~--------~-----g---~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemg 333 (494)
T KOG1456|consen 271 GYRDG--------R-----G---YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMG 333 (494)
T ss_pred ccccC--------C-----C---CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcC
Confidence 11000 0 0 00112344689999999987 689999999999999999999995 44589999999
Q ss_pred CHHHHHHHHHHhCCceeCCCCceeE-EeeCCc
Q 021857 270 DVNSASSVHHNLQGAVIPSSGSVGM-RIQYPF 300 (306)
Q Consensus 270 ~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~~ 300 (306)
|..+.++|+..|||..+-|. .+.| +||.+|
T Consensus 334 d~~aver~v~hLnn~~lfG~-kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 334 DAYAVERAVTHLNNIPLFGG-KLNVCVSKQNF 364 (494)
T ss_pred cHHHHHHHHHHhccCccccc-eEEEeeccccc
Confidence 99999999999999999744 7999 999876
No 32
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.79 E-value=4.9e-18 Score=151.04 Aligned_cols=218 Identities=16% Similarity=0.115 Sum_probs=142.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---CCcC-eEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKP-MGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg-~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
...-+++|.|+-+-+|.|-|+.+|++| |.+++|. ++-| .|+|+|.|.++|+.|...|+|..|++. .++|+|
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~f----G~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrI 222 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKF----GFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRI 222 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhc----ceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEe
Confidence 345677999999999999999999999 9987773 2224 499999999999999999999999862 379999
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
.|++...-..+=. ..|...............++.....++... .....+..+.. .+.
T Consensus 223 d~Sklt~LnvKyn--------ndkSRDyTnp~LP~gd~~p~l~~~~~aa~~--------------~~~~~~g~p~a-ip~ 279 (492)
T KOG1190|consen 223 DFSKLTDLNVKYN--------NDKSRDYTNPDLPVGDGQPSLDQLMAAAFG--------------SVPAVHGAPLA-IPS 279 (492)
T ss_pred ehhhcccceeecc--------ccccccccCCCCCCCccccccchhhhcccc--------------ccccccCCccc-CCc
Confidence 9998765433311 111111111111111111100000000000 00000000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCEEEEcCCCC-CCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHH
Q 021857 203 APVPAPSSYVPVQNTKDNP--PCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH 279 (306)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~tLfV~NLp~-~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~ 279 (306)
... .+.... ..... .+.+|.|.||.+ .+|++.|..+|+.||+|.+|+|+.+++ .-|.|+|.|...|+-|++
T Consensus 280 ~~~--~a~~a~---~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~ 353 (492)
T KOG1190|consen 280 GAA--GANAAD---GKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAME 353 (492)
T ss_pred cch--hhcccc---cccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHH
Confidence 000 000000 00111 268899999976 689999999999999999999997544 789999999999999999
Q ss_pred HhCCceeCCCCceeE-EeeCC
Q 021857 280 NLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 280 ~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.|+|..|.| ++++| |||..
T Consensus 354 hL~g~~l~g-k~lrvt~SKH~ 373 (492)
T KOG1190|consen 354 HLEGHKLYG-KKLRVTLSKHT 373 (492)
T ss_pred HhhcceecC-ceEEEeeccCc
Confidence 999999995 68999 99864
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.7e-18 Score=158.97 Aligned_cols=153 Identities=20% Similarity=0.350 Sum_probs=128.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 52 LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
|||.||++++|..+|.++|+.| |.|+.++ ++||| ||+|++.++|.+|++.|||..+. |+.|.|...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~----g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~---~kki~vg~~ 150 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEF----GNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN---GKKIYVGLF 150 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhh----cCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC---CCeeEEeec
Confidence 9999999999999999999999 9997764 46899 99999999999999999999998 799999876
Q ss_pred cccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (306)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (306)
..+.........
T Consensus 151 ~~~~er~~~~~~-------------------------------------------------------------------- 162 (369)
T KOG0123|consen 151 ERKEEREAPLGE-------------------------------------------------------------------- 162 (369)
T ss_pred cchhhhcccccc--------------------------------------------------------------------
Confidence 544432221000
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhC
Q 021857 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
....-+.+||.|++.++++++|.+.|+.||.|.++.++.+.. ++|+||+|+++++|..|++.||
T Consensus 163 -------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 163 -------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred -------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 000134599999999999999999999999999999996443 4999999999999999999999
Q ss_pred CceeCCCCceeE
Q 021857 283 GAVIPSSGSVGM 294 (306)
Q Consensus 283 G~~i~~~~~~~i 294 (306)
|.... +..+.|
T Consensus 230 ~~~~~-~~~~~V 240 (369)
T KOG0123|consen 230 GKIFG-DKELYV 240 (369)
T ss_pred CCcCC-ccceee
Confidence 99998 445666
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.3e-17 Score=141.15 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=66.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.-.|||+.|...++-|+|++.|.+||+|.++||+++. ++|||||.|.+.++|+.||+.|||.-|+.+ .+|- |+-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R-~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR-TIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc-eeeccccc
Confidence 3459999999999999999999999999999999764 359999999999999999999999999944 6777 764
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.1e-16 Score=126.85 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=125.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCC---cCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGE---KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~---kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
...++|||+|||.++.|.||.++|.+| |.|+.| +.. -+||||+|++..+|+.|+-.-+|..++ |..|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKy----g~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd---g~rLR 76 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKY----GRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD---GCRLR 76 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhh----cceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC---cceEE
Confidence 346899999999999999999999999 999666 322 389999999999999999999999999 89999
Q ss_pred EEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (306)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (306)
|+|+..-....... +..... ... .++.-.
T Consensus 77 VEfprggr~s~~~~---G~y~gg-------------grg-----------Ggg~gg------------------------ 105 (241)
T KOG0105|consen 77 VEFPRGGRSSSDRR---GSYSGG-------------GRG-----------GGGGGG------------------------ 105 (241)
T ss_pred EEeccCCCcccccc---cccCCC-------------CCC-----------CCCCCc------------------------
Confidence 99985443211100 000000 000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHh
Q 021857 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (306)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~l 281 (306)
.. ..+.-.....|.|.+||..-++++|++..-.-|+|-..++..+ |++.|+|...++-.-|+..|
T Consensus 106 -------~r-----gppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 106 -------RR-----GPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred -------cc-----CCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhh
Confidence 00 0000112456999999999999999999999999988888742 58999999999999999999
Q ss_pred CCceeCC
Q 021857 282 QGAVIPS 288 (306)
Q Consensus 282 nG~~i~~ 288 (306)
....+..
T Consensus 171 d~~~~~s 177 (241)
T KOG0105|consen 171 DDQKFRS 177 (241)
T ss_pred ccccccC
Confidence 9988773
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=5.8e-18 Score=155.91 Aligned_cols=164 Identities=17% Similarity=0.245 Sum_probs=128.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
-..||||+--|.-.+++-||.++|+.+ |.|..++ .+||.|||+|.|.++...|+. |.|..+. |-
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~----gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrll---g~ 248 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIV----GKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLL---GV 248 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhh----cCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCccc---Cc
Confidence 357899999999999999999999999 8874331 346999999999999999996 9999998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
+|.|............ . + .|..
T Consensus 249 pv~vq~sEaeknr~a~---~-----------------------------s---~a~~----------------------- 270 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRAAN---A-----------------------------S---PALQ----------------------- 270 (549)
T ss_pred eeEecccHHHHHHHHh---c-----------------------------c---cccc-----------------------
Confidence 9998876433221110 0 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSA 274 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A 274 (306)
...-..|...|||+||+.++++++|+.+|+.||.|+.|.++.+. .+|||||+|.+.++|
T Consensus 271 -----------------~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 271 -----------------GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred -----------------ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 00001123349999999999999999999999999999998653 249999999999999
Q ss_pred HHHHHHhCCceeCCCCceeE
Q 021857 275 SSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~~~~~~i 294 (306)
.+|++.|||++|-|. .|+|
T Consensus 334 r~a~e~lngfelAGr-~ikV 352 (549)
T KOG0147|consen 334 RKALEQLNGFELAGR-LIKV 352 (549)
T ss_pred HHHHHHhccceecCc-eEEE
Confidence 999999999999966 5777
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=5e-16 Score=146.89 Aligned_cols=201 Identities=19% Similarity=0.202 Sum_probs=131.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeC-CcC-eEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG-EKP-MGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~-~kg-~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
..+.++|+|||..+..++|..+|..| |.|.++-- .-| .+.|+|.+..+|+.|+..|+...+. ..+++++|+
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~f----G~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k---~~plyle~a 456 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRF----GEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFK---SAPLYLEWA 456 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcc----cccceeecCcccceeeeeecCccchHHHHHHhchhhhc---cCccccccC
Confidence 45789999999999999999999999 88865521 123 4999999999999999999999987 378899998
Q ss_pred cccchhccccccCCcccccccccc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 126 KKNLFVKRGIVADTNAYDQSKRLR-TGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (306)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
.........+..+-......+... ................. +.
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d-----------------------------------~t- 500 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKD-----------------------------------PT- 500 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCC-----------------------------------cc-
Confidence 544332111000000000000000 00000000000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCC-EEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc-------ceEEEEECCHHHHHH
Q 021857 205 VPAPSSYVPVQNTKDNPPCN-TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH-------TVCFIEFEDVNSASS 276 (306)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~-tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~-------g~aFV~F~~~~~A~~ 276 (306)
..+ ...... ...... +|||.||+++++.++|..+|..+|.|.++.|..+.+. |||||+|.+.++|++
T Consensus 501 ---e~s-s~a~~a-~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~ 575 (725)
T KOG0110|consen 501 ---EES-SLARVA-EDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQA 575 (725)
T ss_pred ---ccc-cchhhh-hccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHH
Confidence 000 000000 011122 2999999999999999999999999999988754432 999999999999999
Q ss_pred HHHHhCCceeCCCCceeE-Eee
Q 021857 277 VHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 277 Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
|+..|+|..|.|. .+.| |+.
T Consensus 576 a~k~lqgtvldGH-~l~lk~S~ 596 (725)
T KOG0110|consen 576 ALKALQGTVLDGH-KLELKISE 596 (725)
T ss_pred HHHHhcCceecCc-eEEEEecc
Confidence 9999999999954 6888 876
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.67 E-value=3.4e-16 Score=144.39 Aligned_cols=230 Identities=13% Similarity=0.131 Sum_probs=128.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe----e----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~----~----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
...|.++|||+||.+.+||++|+..|+.| |.|-.| . ..||||||+|.+.++|.+|++.|||+.|-
T Consensus 274 ~~~p~~rl~vgnLHfNite~~lr~ifepf----g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA--- 346 (549)
T KOG0147|consen 274 FTGPMRRLYVGNLHFNITEDMLRGIFEPF----GKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA--- 346 (549)
T ss_pred cccchhhhhhcccccCchHHHHhhhccCc----ccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec---
Confidence 34556669999999999999999999999 888333 1 23699999999999999999999999888
Q ss_pred CCeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q 021857 117 KSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDP-YGGYGVP 195 (306)
Q Consensus 117 g~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 195 (306)
|+.|+|.....+...+.... .....+.... ...+.+..+..+......+...... ++..+. ....+..
T Consensus 347 Gr~ikV~~v~~r~~~~~a~~-~~~d~D~~d~-----~gl~~~~~g~~Ql~~kla~~~~~~~-----~s~~~~~l~~~~~~ 415 (549)
T KOG0147|consen 347 GRLIKVSVVTERVDTKEAAV-TQFDFDEDDR-----QGLSLGSGGRNQLMAKLAEGKGRSL-----PSTAISALLLLAKL 415 (549)
T ss_pred CceEEEEEeeeecccccccc-cccccchhhc-----cccccccccHHHHHHHHhccCCccc-----cchhhhHHHhcccc
Confidence 99999987644433221100 0000000000 0000000000000000000000000 000000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCC--CCC--------HHHHHHhhccCCCceEEEEEecCCcceEE
Q 021857 196 PVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE--SIN--------EEELRGLFSAQPGFKQMKVLRQERHTVCF 265 (306)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~--~~t--------~e~L~~~F~~~G~i~~vkl~~~~~~g~aF 265 (306)
................+......-..+...|.++|+=. ..| .|++++-+++||.|..|.+.. ...|+-|
T Consensus 416 ~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~-ns~g~VY 494 (549)
T KOG0147|consen 416 ASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDK-NSAGCVY 494 (549)
T ss_pred chHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEcc-CCCceEE
Confidence 00000000000000000000000114567788899832 222 278889999999999988874 4449999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 266 IEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 266 V~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
|.|.+.+.|..|+.+|||..+.|. -+++
T Consensus 495 vrc~s~~~A~~a~~alhgrWF~gr-~Ita 522 (549)
T KOG0147|consen 495 VRCPSAEAAGTAVKALHGRWFAGR-MITA 522 (549)
T ss_pred EecCcHHHHHHHHHHHhhhhhccc-eeEE
Confidence 999999999999999999999954 4555
No 39
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.7e-16 Score=133.16 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=125.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccccc
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~~~ 129 (306)
..|||++|++.+.+.||..+|..| |.+..+.-..||+||+|.|..+|..|+..|||..|. |..+.|+|++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~y----g~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~---~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGY----GKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELC---GERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhc----cccccceeecccceeccCchhhhhcccchhcCceec---ceeeeeecccccc
Confidence 479999999999999999999999 998766655699999999999999999999999997 6668889885442
Q ss_pred hhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 130 FVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPS 209 (306)
Q Consensus 130 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (306)
.-.. ... .+.... |.. .
T Consensus 75 ~~~g---------------~~~------~g~r~~---------~~~-~-------------------------------- 91 (216)
T KOG0106|consen 75 RGRG---------------RPR------GGDRRS---------DSR-R-------------------------------- 91 (216)
T ss_pred cccC---------------CCC------CCCccc---------hhh-c--------------------------------
Confidence 1100 000 000000 000 0
Q ss_pred CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 210 SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 210 ~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
-..+.....+|+|.|+...+.+.+|.+.|+.+|.+....++. +++||+|.+.++|.+|++.|+|..+.+.
T Consensus 92 ------~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~~v~Fs~~~da~ra~~~l~~~~~~~~ 161 (216)
T KOG0106|consen 92 ------YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFAFVEFSEQEDAKRALEKLDGKKLNGR 161 (216)
T ss_pred ------cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----cccceeehhhhhhhhcchhccchhhcCc
Confidence 000112367899999999999999999999999996666543 7899999999999999999999999944
Q ss_pred CceeE
Q 021857 290 GSVGM 294 (306)
Q Consensus 290 ~~~~i 294 (306)
++.+
T Consensus 162 -~l~~ 165 (216)
T KOG0106|consen 162 -RISV 165 (216)
T ss_pred -eeee
Confidence 6776
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=7.5e-16 Score=123.74 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
+++|||+||++++|+++|+++|++||.|++++|+.+. .+|||||+|.+.++|++||+.|||..|.+. +++| +++
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr-~l~V~~a~ 112 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR-HIRVNPAN 112 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE-EEEEEeCC
Confidence 6789999999999999999999999999999998643 259999999999999999999999999954 7999 876
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
..
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 43
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=3.2e-15 Score=120.10 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
....++|||+||++++||++|+++|+.| |.|..++ ..||||||+|.+.++|+.|++.|||..|. |
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~---G 103 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHF----GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN---G 103 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 3567899999999999999999999999 8884431 24799999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|++++.+.
T Consensus 104 r~l~V~~a~~~~ 115 (144)
T PLN03134 104 RHIRVNPANDRP 115 (144)
T ss_pred EEEEEEeCCcCC
Confidence 999999986543
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.63 E-value=8.8e-16 Score=136.64 Aligned_cols=148 Identities=17% Similarity=0.247 Sum_probs=114.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
+.++|||++|++++|||.|+..|+.| |.++.+. ..|||+||+|.+.++..++|.. .-..|+ |+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~----Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~d---gr~ 76 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQF----GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLD---GRS 76 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhccc----CceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccC---Ccc
Confidence 67899999999999999999999999 8774431 2469999999999999998873 344666 788
Q ss_pred EEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 120 i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
|.+.-+.++....+..
T Consensus 77 ve~k~av~r~~~~~~~---------------------------------------------------------------- 92 (311)
T KOG4205|consen 77 VEPKRAVSREDQTKVG---------------------------------------------------------------- 92 (311)
T ss_pred ccceeccCcccccccc----------------------------------------------------------------
Confidence 8777665544322100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~ 275 (306)
.....+.+||+.|+.++++++|++.|.+||.|..+-++.+.. +||+||+|++++++.
T Consensus 93 -------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 93 -------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred -------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 000256799999999999999999999999888887775543 399999999999999
Q ss_pred HHHHHhCCceeC
Q 021857 276 SVHHNLQGAVIP 287 (306)
Q Consensus 276 ~Ai~~lnG~~i~ 287 (306)
+++.. ..+.|.
T Consensus 154 kv~~~-~f~~~~ 164 (311)
T KOG4205|consen 154 KVTLQ-KFHDFN 164 (311)
T ss_pred eeccc-ceeeec
Confidence 98753 444444
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.62 E-value=1e-14 Score=127.61 Aligned_cols=182 Identities=15% Similarity=0.173 Sum_probs=124.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE----------e-e----CCcCeEEEEeCCHHHHHHHHHHhcCcee
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN----------Y-K----GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~----------~-~----~~kg~aFV~F~~~~~A~~Al~~l~g~~~ 112 (306)
-|..|||+|||.++|.+++.++|+++ |.|.+ + + ..||=|++.|--.++...|+..|++..|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKc----GiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKC----GIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhc----ceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 46779999999999999999999999 77732 2 1 3469999999999999999999999999
Q ss_pred CCCCCCeEEEEEccccchhcccccc--CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 113 DAETKSVLHTEMAKKNLFVKRGIVA--DTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYG 190 (306)
Q Consensus 113 ~~~~g~~i~V~~a~~~~~~~~~~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (306)
. |+.|+|+.|+-..+-...... ........+-.....+.. .|.... -
T Consensus 209 r---g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~----------------dw~pd~-~----------- 257 (382)
T KOG1548|consen 209 R---GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLL----------------DWRPDR-D----------- 257 (382)
T ss_pred c---CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhc----------------ccCCCc-c-----------
Confidence 8 899999988544321111000 000000000000000000 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCC----CCCC-------HHHHHHhhccCCCceEEEEEecC
Q 021857 191 GYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLG----ESIN-------EEELRGLFSAQPGFKQMKVLRQE 259 (306)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp----~~~t-------~e~L~~~F~~~G~i~~vkl~~~~ 259 (306)
...-....+||.++||= ...+ .++|++-++.||.|.+|.|..+.
T Consensus 258 -------------------------~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h 312 (382)
T KOG1548|consen 258 -------------------------DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH 312 (382)
T ss_pred -------------------------ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC
Confidence 00011136889999993 2344 35667779999999999998534
Q ss_pred CcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 260 RHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 260 ~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
..|.+-|.|.|.++|+.||+.|+|+.+.|+
T Consensus 313 PdGvvtV~f~n~eeA~~ciq~m~GR~fdgR 342 (382)
T KOG1548|consen 313 PDGVVTVSFRNNEEADQCIQTMDGRWFDGR 342 (382)
T ss_pred CCceeEEEeCChHHHHHHHHHhcCeeecce
Confidence 449999999999999999999999999965
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=2.3e-15 Score=105.53 Aligned_cols=64 Identities=34% Similarity=0.581 Sum_probs=59.3
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 226 LfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
|||+|||.++|+++|+++|+.||.|..++++.+.. +++|||+|++.++|.+|++.|||+.|.|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 79999999999999999999999999999997522 39999999999999999999999999954
No 45
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.61 E-value=5.4e-15 Score=136.43 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
..+++|||+|||+++|+++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++.|||..|. ||
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~f----G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~---gr 339 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPF----GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG---NR 339 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC---Ce
Confidence 456789999999999999999999999 8885442 24799999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 021857 119 VLHTEMAKKN 128 (306)
Q Consensus 119 ~i~V~~a~~~ 128 (306)
.|+|.|...+
T Consensus 340 ~i~V~~~~~~ 349 (352)
T TIGR01661 340 VLQVSFKTNK 349 (352)
T ss_pred EEEEEEccCC
Confidence 9999998655
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.60 E-value=7.9e-14 Score=125.35 Aligned_cols=230 Identities=14% Similarity=0.181 Sum_probs=129.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEe-----eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY-----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~-----~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
-.|.+||+|||+++.|.||+++|.... |.| |.+ .+.||+|.|+|++.|.+++|++.||.+.+. ||+|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekv---Gev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~---GR~l 116 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKV---GEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVN---GREL 116 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhc---CceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcccc---CceE
Confidence 367799999999999999999999763 444 222 245799999999999999999999999998 9999
Q ss_pred EEEEccccchhccccc-cCCc-cccccccccCCCCCCCCCCCCCCCC--CCCCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIV-ADTN-AYDQSKRLRTGGDYTHTGYSAPSPF--HAPPAPV--WGPHGYMAPPPPPYDPYGGYGV 194 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~-~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 194 (306)
.|.-..+....++.+- .++. .+...-..+..........+..... ..+..+- .....-...+...++....|.+
T Consensus 117 ~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~l 196 (608)
T KOG4212|consen 117 VVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNL 196 (608)
T ss_pred EEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhc
Confidence 9986544332222110 0000 0000000000000000000000000 0000000 0000000000001111111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCH
Q 021857 195 PPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDV 271 (306)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~ 271 (306)
... ..++.-.......|....+||.||...+....|+++|...|.|.+|.+-.++- +||+.|+|+++
T Consensus 197 fgl----------~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 197 FGL----------SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHP 266 (608)
T ss_pred ccc----------hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecch
Confidence 000 00000000111233467799999999999999999999999999988775432 39999999999
Q ss_pred HHHHHHHHHhCCceeCCCCceeE
Q 021857 272 NSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 272 ~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
-+|.+||..|++.-+. +.++.+
T Consensus 267 veavqaIsml~~~g~~-~~~~~~ 288 (608)
T KOG4212|consen 267 VEAVQAISMLDRQGLF-DRRMTV 288 (608)
T ss_pred HHHHHHHHhhccCCCc-ccccee
Confidence 9999999999974333 334444
No 47
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=6.6e-15 Score=141.55 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccc
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~ 127 (306)
..++|||+||++++|||+|+++|+.| ..|.|.+++..++||||+|.+.++|++|++.|||..|. |+.|+|.|++.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f--~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~---Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEF--KPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELE---GSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhc--CCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEEC---CEEEEEEEccC
Confidence 46899999999999999999999987 12677777667899999999999999999999999998 89999999976
Q ss_pred cch
Q 021857 128 NLF 130 (306)
Q Consensus 128 ~~~ 130 (306)
...
T Consensus 307 ~~~ 309 (578)
T TIGR01648 307 VDK 309 (578)
T ss_pred CCc
Confidence 543
No 48
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=1.4e-14 Score=132.40 Aligned_cols=79 Identities=16% Similarity=0.329 Sum_probs=70.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
.....++|||+|||+++|+++|+++|+.||.|++|+|+.+.. +|||||+|.++++|.+||+.|||..|.+ .+|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g-r~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN-KRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC-ceeee
Confidence 344689999999999999999999999999999999986532 4999999999999999999999999985 48999
Q ss_pred -EeeC
Q 021857 295 -RIQY 298 (306)
Q Consensus 295 -~~k~ 298 (306)
|++.
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 8863
No 49
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.5e-14 Score=115.47 Aligned_cols=77 Identities=26% Similarity=0.339 Sum_probs=70.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCCcc
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYPFC 301 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~~~ 301 (306)
++.|||+||+..+++.||..+|..||.|.+|.|..+. .|||||+|++..+|+.|+..|+|..|-|. +++| +++.-+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~cG~-r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDICGS-RIRVELSTGRPR 87 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-CCceEEeccCcccHHHHHhhcCCccccCc-eEEEEeecCCcc
Confidence 6889999999999999999999999999999998633 39999999999999999999999999965 7999 8877665
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=4.1e-14 Score=121.84 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=66.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC-CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~-~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.++|||+||++.+|+++|+++|+.||.|++|+|..+. .+|||||+|.+.++|..||. |||..|.++ +++| .++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr-~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQ-SVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCc-eEEEEecc
Confidence 5789999999999999999999999999999999765 35999999999999999995 999999955 7999 664
No 51
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=119.75 Aligned_cols=81 Identities=15% Similarity=0.335 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe------eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~------~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.-++|+|+|||+.-.|-||+.+|++| |.|++| |++||||||+|++.++|++|-++|+|..+. ||.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE---GRk 165 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE---GRK 165 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee---ceE
Confidence 4556899999999999999999999999 888554 578999999999999999999999999999 999
Q ss_pred EEEEEccccchhcc
Q 021857 120 LHTEMAKKNLFVKR 133 (306)
Q Consensus 120 i~V~~a~~~~~~~~ 133 (306)
|.|+.+..+-.+++
T Consensus 166 IEVn~ATarV~n~K 179 (376)
T KOG0125|consen 166 IEVNNATARVHNKK 179 (376)
T ss_pred EEEeccchhhccCC
Confidence 99999977754433
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.9e-12 Score=112.24 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
-.+|||..+..+++|+||+.+|+.| |.|+.++ +.|||||++|.+..+-..|+..||-+++. |..|
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAF----G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG---GQyL 282 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQYL 282 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhh----cceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc---cceE
Confidence 5689999999999999999999999 9998873 34799999999999999999999999998 8999
Q ss_pred EEEEcc
Q 021857 121 HTEMAK 126 (306)
Q Consensus 121 ~V~~a~ 126 (306)
+|..+-
T Consensus 283 RVGk~v 288 (544)
T KOG0124|consen 283 RVGKCV 288 (544)
T ss_pred eccccc
Confidence 998653
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.48 E-value=1.5e-13 Score=96.21 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=55.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNY--K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 52 LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
|||+|||.++|+++|+++|+.| |.+..+ . ..+|+|||+|.+.++|++|++.|+|..+. |+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~---~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF----GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN---GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT----STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh----hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC---ccCcC
Confidence 7999999999999999999999 877333 1 13599999999999999999999999998 78775
No 54
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.7e-13 Score=100.03 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=64.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC-CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~-~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
++.|||+|||.++|.|+..++|..||.|+.|+|--.. .+|.|||-|++..+|.+|++.|+|+.+.+. .+.|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r-yl~v 89 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR-YLVV 89 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc-eEEE
Confidence 7889999999999999999999999999999997433 349999999999999999999999999965 4666
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=3.2e-13 Score=94.89 Aligned_cols=64 Identities=27% Similarity=0.471 Sum_probs=57.4
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 226 LfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
|||+|||+++++++|+++|+.||.|..+++..+.. +++|||+|.+.++|.+|++.++|..|.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 79999999999999999999999999999997543 49999999999999999999999999854
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.6e-13 Score=119.52 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=66.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
.++|+|+|||+..-|.||+.+|.+||.|.+|.|+.+.+ ||||||+|++.++|++|.++|||..|.|+ ++.|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGR-kIEV 168 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGR-KIEV 168 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeece-EEEE
Confidence 47799999999999999999999999999999998766 49999999999999999999999999966 5777
No 57
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=3.9e-13 Score=98.19 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=68.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
....++-|||+|||+++|.|++.++|.+| |.|..|+ ..+|.|||.|++..+|.+|++.|+|..+. ++.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~---~ry 86 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD---NRY 86 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcc----cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC---Cce
Confidence 34568999999999999999999999999 9996664 34799999999999999999999999998 799
Q ss_pred EEEEEccccc
Q 021857 120 LHTEMAKKNL 129 (306)
Q Consensus 120 i~V~~a~~~~ 129 (306)
+.|-|-....
T Consensus 87 l~vlyyq~~~ 96 (124)
T KOG0114|consen 87 LVVLYYQPED 96 (124)
T ss_pred EEEEecCHHH
Confidence 9999865443
No 58
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.9e-13 Score=109.10 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
+.+++|||+||+..+|+.||..+|..| |.+-.| +.-.|||||+|++..+|+.|+..|+|..|. |..|+|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~c---G~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC---GSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhc----CcceeEEEeecCCCceEEeccCcccHHHHHhhcCCcccc---CceEEEE
Confidence 558999999999999999999999999 887332 444699999999999999999999999998 8999999
Q ss_pred Eccccch
Q 021857 124 MAKKNLF 130 (306)
Q Consensus 124 ~a~~~~~ 130 (306)
+++....
T Consensus 81 ~S~G~~r 87 (195)
T KOG0107|consen 81 LSTGRPR 87 (195)
T ss_pred eecCCcc
Confidence 9866543
No 59
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.46 E-value=1.5e-11 Score=108.82 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=132.3
Q ss_pred CCCCceEEEcCCC-CCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 46 HDEVRTIFITGLP-DDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 46 ~~~~~~LfV~nLp-~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
..+++.+.|.+|. ..+.-|.|.++|.-| |.|.+|+ +.-|-|+|++.|..+.++|+..||+..+. |..|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClY----GNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lf---G~kl~ 356 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLY----GNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLF---GGKLN 356 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhc----CceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccc---cceEE
Confidence 4578999999998 579999999999999 9997775 33499999999999999999999999998 89999
Q ss_pred EEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (306)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (306)
|.++|......- ..+...... + ++.-+....
T Consensus 357 v~~SkQ~~v~~~------~pflLpDgS--------p---------------------------SfKdys~Sk-------- 387 (494)
T KOG1456|consen 357 VCVSKQNFVSPV------QPFLLPDGS--------P---------------------------SFKDYSGSK-------- 387 (494)
T ss_pred EeeccccccccC------CceecCCCC--------c---------------------------chhhccccc--------
Confidence 998866553211 011100000 0 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCC-ceEEEEEecCC--cceEEEEECCHHHHHHHH
Q 021857 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQER--HTVCFIEFEDVNSASSVH 278 (306)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~-i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai 278 (306)
+-+. .+.........-+|+.+|...|.|..+|||.|.++|...+. ..+|||++-++ .--+.++|++.++|..||
T Consensus 388 NnRF---ssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal 464 (494)
T KOG1456|consen 388 NNRF---SSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEAL 464 (494)
T ss_pred cccc---CChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHH
Confidence 0000 00011112344567899999999999999999999987664 56888885332 267899999999999999
Q ss_pred HHhCCceeCCC
Q 021857 279 HNLQGAVIPSS 289 (306)
Q Consensus 279 ~~lnG~~i~~~ 289 (306)
..||-+.|.+.
T Consensus 465 ~~~NH~pi~~p 475 (494)
T KOG1456|consen 465 MKLNHYPIEGP 475 (494)
T ss_pred HHhccccccCC
Confidence 99999988754
No 60
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=5.1e-13 Score=113.38 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=64.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc-ceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH-TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~-g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
.+.||||+||++.+|+++|+++|+.||.|.+|+|+++.+. ++|||+|.++++|..|+ .|||..|.+. ++.|
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~-~I~I 75 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQ-RVCI 75 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCc-eEEE
Confidence 3689999999999999999999999999999999976543 89999999999999998 7999999855 6888
No 61
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=3.3e-12 Score=112.42 Aligned_cols=166 Identities=19% Similarity=0.231 Sum_probs=112.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
.++|||+|||.++|+++|+++|..+ |.+..++ ..+|+|||+|.+.++|..|++.++|..|. |+.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~----g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~---~~~~ 187 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF----GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE---GRPL 187 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc----CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC---Ccee
Confidence 6999999999999999999999999 7773321 34699999999999999999999999998 8999
Q ss_pred EEEEccc-cchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKK-NLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 121 ~V~~a~~-~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
.|.++.. ........ .. .......+ .
T Consensus 188 ~v~~~~~~~~~~~~~~--~~--~~~~~~~~---------~---------------------------------------- 214 (306)
T COG0724 188 RVQKAQPASQPRSELS--NN--LDASFAKK---------L---------------------------------------- 214 (306)
T ss_pred Eeeccccccccccccc--cc--cchhhhcc---------c----------------------------------------
Confidence 9999754 10000000 00 00000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc----ceEEEEECCHHHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH----TVCFIEFEDVNSAS 275 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~----g~aFV~F~~~~~A~ 275 (306)
.............+++.|++..++..++...|..+|.+..+.+...... ...++.+.....+.
T Consensus 215 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (306)
T COG0724 215 -------------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDAL 281 (306)
T ss_pred -------------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhh
Confidence 0000011223677999999999999999999999999987777653332 23344555555555
Q ss_pred HHHHHhCCceeC
Q 021857 276 SVHHNLQGAVIP 287 (306)
Q Consensus 276 ~Ai~~lnG~~i~ 287 (306)
..+...+.....
T Consensus 282 ~~~~~~~~~~~~ 293 (306)
T COG0724 282 ESNSRGNKKKIL 293 (306)
T ss_pred hhhccccceeec
Confidence 555554444443
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=8.7e-13 Score=113.69 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=63.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
.++|||+||++.+||++|+++|+.| |.|..+. ..+|||||+|.+.++|+.||. |+|..|. |+.|+|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~----G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~---gr~V~Vt 75 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS----GDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV---DQSVTIT 75 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC---CceEEEE
Confidence 6899999999999999999999999 9985542 246999999999999999996 9999998 8999999
Q ss_pred Eccc
Q 021857 124 MAKK 127 (306)
Q Consensus 124 ~a~~ 127 (306)
++..
T Consensus 76 ~a~~ 79 (260)
T PLN03120 76 PAED 79 (260)
T ss_pred eccC
Confidence 9743
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4e-13 Score=101.91 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=63.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
..+||||+||++.+|||.|.++|+++ |.|.+|- +--||+||+|.+.++|..||.-++|..|+ .++
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~c----G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd---dr~ 107 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKC----GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD---DRP 107 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhc----cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc---ccc
Confidence 47899999999999999999999999 9984441 12399999999999999999999999998 599
Q ss_pred EEEEEc
Q 021857 120 LHTEMA 125 (306)
Q Consensus 120 i~V~~a 125 (306)
|+|.|.
T Consensus 108 ir~D~D 113 (153)
T KOG0121|consen 108 IRIDWD 113 (153)
T ss_pred eeeecc
Confidence 999986
No 64
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=4.7e-13 Score=122.15 Aligned_cols=79 Identities=20% Similarity=0.422 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCH--HHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDV--NSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~--~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
..+||||||.+.+++++|..+|+.||.|.+|.|++...+|||||+|.+. .++.+||..|||.++.|+ .|+| =+|--
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR-~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG-RLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCc-eeEEeeccHH
Confidence 5689999999999999999999999999999999766679999999987 789999999999999966 6999 77766
Q ss_pred ccc
Q 021857 300 FCC 302 (306)
Q Consensus 300 ~~~ 302 (306)
|-+
T Consensus 89 YLe 91 (759)
T PLN03213 89 YLA 91 (759)
T ss_pred HHH
Confidence 544
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.6e-13 Score=101.56 Aligned_cols=72 Identities=19% Similarity=0.373 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc----ceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH----TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~----g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
.++||||+||...++||+|.++|+..|.|+.|-+-.++.+ ||+||+|-+.++|+.||.-+||..+..+ .++|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr-~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR-PIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc-ceee
Confidence 4789999999999999999999999999999877655543 9999999999999999999999999944 7888
No 66
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.40 E-value=9e-12 Score=114.04 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=108.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEe--eCC--cCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY--KGE--KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~--~~~--kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
...-|-+++|||++|++||+++|+.+ +.. +.+ .+. .|-|||+|.+.+++++||+ .+...+. .|-|.|
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~----~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg---~RYIEV 80 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC----GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMG---HRYIEV 80 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC----ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhC---CceEEE
Confidence 34567789999999999999999987 221 222 222 4999999999999999998 6777776 488887
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
--+....-... . + +.+
T Consensus 81 f~~~~~e~d~~----------~-~-----------------------------------------~~g------------ 96 (510)
T KOG4211|consen 81 FTAGGAEADWV----------M-R-----------------------------------------PGG------------ 96 (510)
T ss_pred EccCCcccccc----------c-c-----------------------------------------CCC------------
Confidence 65532211000 0 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceE-EEEEecCC---cceEEEEECCHHHHHHHH
Q 021857 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLRQER---HTVCFIEFEDVNSASSVH 278 (306)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~-vkl~~~~~---~g~aFV~F~~~~~A~~Ai 278 (306)
+.+ .....+|-+++||+.+|++||.++|+..--+.. +-+.-+.+ .|-|||+|++.+.|++|+
T Consensus 97 -----~~s---------~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 97 -----PNS---------SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred -----CCC---------CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 000 012577999999999999999999987543333 22221222 399999999999999999
Q ss_pred HHhCCceeCCCCceeE
Q 021857 279 HNLQGAVIPSSGSVGM 294 (306)
Q Consensus 279 ~~lnG~~i~~~~~~~i 294 (306)
.. |-+.|. ..-+.|
T Consensus 163 ~r-hre~iG-hRYIEv 176 (510)
T KOG4211|consen 163 GR-HRENIG-HRYIEV 176 (510)
T ss_pred HH-HHHhhc-cceEEe
Confidence 86 445555 444566
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=8.5e-13 Score=110.74 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+..+|-|.||+++++|++|.++|..||.|.++.|..++. +|||||+|.++++|++||..|||+-+. +--|+| |+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd-~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD-NLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc-eEEEEEEec
Confidence 577899999999999999999999999999999997654 499999999999999999999999998 556788 98
Q ss_pred eC
Q 021857 297 QY 298 (306)
Q Consensus 297 k~ 298 (306)
|-
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 74
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.1e-12 Score=108.37 Aligned_cols=77 Identities=26% Similarity=0.374 Sum_probs=67.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe-----e---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~-----~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
..+...+|=|.||+.+++|+||++||..| |.|.++ + ..||||||+|.+.++|++|++.|||.-++
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd--- 257 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD--- 257 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc---
Confidence 34567889999999999999999999999 888554 1 24799999999999999999999999998
Q ss_pred CCeEEEEEcccc
Q 021857 117 KSVLHTEMAKKN 128 (306)
Q Consensus 117 g~~i~V~~a~~~ 128 (306)
.-.|+|+|++++
T Consensus 258 ~LILrvEwskP~ 269 (270)
T KOG0122|consen 258 NLILRVEWSKPS 269 (270)
T ss_pred eEEEEEEecCCC
Confidence 478999999764
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=1.9e-12 Score=90.15 Aligned_cols=69 Identities=29% Similarity=0.516 Sum_probs=61.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC--CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE--RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 225 tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~--~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
+|||+|||..+++++|+++|+.||.|..+++..+. ..++|||+|.+.++|.+|++.|+|..+.+. +++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~-~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGR-PLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCE-EEee
Confidence 48999999999999999999999999999998654 238999999999999999999999999843 5543
No 70
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.38 E-value=1.2e-12 Score=109.09 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----hhccCCCceEEEEEecCC-cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 222 PCNTLFIGNLGESINEEELRG----LFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~----~F~~~G~i~~vkl~~~~~-~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
++.||||.||++.+..++|+. +|++||.|..|......+ +|.|||.|.+.+.|..|+.+|+|+.+. +++|+| |
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy-gK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY-GKPMRIQY 86 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc-Cchhheec
Confidence 466999999999999999987 999999999998884333 399999999999999999999999999 558999 9
Q ss_pred eeCCccc
Q 021857 296 IQYPFCC 302 (306)
Q Consensus 296 ~k~~~~~ 302 (306)
+++.=|+
T Consensus 87 A~s~sdi 93 (221)
T KOG4206|consen 87 AKSDSDI 93 (221)
T ss_pred ccCccch
Confidence 9987654
No 71
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1e-12 Score=118.71 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~ 126 (306)
.....|||+||+.++|||.|+++|+.| |.|.+|++.|-||||+|.+.++|.+||+.|||+.|+ |..|.|.+||
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~----G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeld---G~~iEvtLAK 329 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEF----GKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELD---GSPIEVTLAK 329 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhc----cceEEeecccceeEEeecchHHHHHHHHHhcCceec---CceEEEEecC
Confidence 357889999999999999999999999 999999888999999999999999999999999999 9999999999
Q ss_pred ccchhcc
Q 021857 127 KNLFVKR 133 (306)
Q Consensus 127 ~~~~~~~ 133 (306)
+..+.+.
T Consensus 330 P~~k~k~ 336 (506)
T KOG0117|consen 330 PVDKKKK 336 (506)
T ss_pred Chhhhcc
Confidence 8776444
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=3.7e-12 Score=89.43 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=53.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---C----CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 52 LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~----~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
|||+|||+++|+++|+++|+.+ |.|..++ . .+|+|||+|.+.++|.+|++.++|..+. |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~---g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID---GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC---CEEcC
Confidence 7999999999999999999999 8774442 2 2699999999999999999999989998 78764
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=4.6e-12 Score=85.01 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=48.8
Q ss_pred HHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 240 LRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 240 L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
|+++|++||.|+++++..+. +++|||+|.+.++|.+|++.|||..+.| ++++| ||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g-~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG-RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT-EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEC
Confidence 68899999999999998644 4899999999999999999999999984 58999 86
No 74
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4.9e-12 Score=118.29 Aligned_cols=183 Identities=16% Similarity=0.215 Sum_probs=127.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEe----eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~----~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
....++||++||..++++++++++..| |.+ +.. ..++||||.+|.+......|+..|||..+. ++
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~f----g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg---d~ 359 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSF----GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG---DK 359 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhc----ccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc---Cc
Confidence 346789999999999999999999999 665 111 245899999999999999999999999998 79
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|.|..+-........-. . .+..+.
T Consensus 360 ~lvvq~A~~g~~~~~~~~-~---------------------~~~~~~--------------------------------- 384 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNF-N---------------------ISQSQV--------------------------------- 384 (500)
T ss_pred eeEeehhhccchhccccC-C---------------------cccccc---------------------------------
Confidence 999998744432111000 0 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCC--CC-CCH-------HHHHHhhccCCCceEEEEEec-CC------c
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLG--ES-INE-------EELRGLFSAQPGFKQMKVLRQ-ER------H 261 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp--~~-~t~-------e~L~~~F~~~G~i~~vkl~~~-~~------~ 261 (306)
.+...........+..+|.+.|+= .+ .++ |+++.-|..||.|.+|.+.+. .. .
T Consensus 385 ----------~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~ 454 (500)
T KOG0120|consen 385 ----------PGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGT 454 (500)
T ss_pred ----------ccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCc
Confidence 000000001123346677777762 11 122 566777889999999999865 21 2
Q ss_pred ceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCCcc
Q 021857 262 TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYPFC 301 (306)
Q Consensus 262 g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~~~ 301 (306)
|.-||+|.+.+++++|+++|+|..+.+.-.+.. |....|.
T Consensus 455 GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 455 GKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred ccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhh
Confidence 788999999999999999999999996644444 7766664
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=6.3e-12 Score=114.85 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe----eCCcCeEEEEeCCH--HHHHHHHHHhcCceeCCCCCCeE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTA--QLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~----~~~kg~aFV~F~~~--~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
..+-+||||||++++|++||+.+|+.| |.|.++ .+.||||||+|.+. .++.+|++.|||..+. |+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeF----GsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK---GR~L 80 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPM----GTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK---GGRL 80 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec---Ccee
Confidence 346799999999999999999999999 887433 24589999999987 7899999999999999 9999
Q ss_pred EEEEccccc
Q 021857 121 HTEMAKKNL 129 (306)
Q Consensus 121 ~V~~a~~~~ 129 (306)
+|+-|+...
T Consensus 81 KVNKAKP~Y 89 (759)
T PLN03213 81 RLEKAKEHY 89 (759)
T ss_pred EEeeccHHH
Confidence 999997664
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=7.7e-12 Score=86.66 Aligned_cols=66 Identities=29% Similarity=0.511 Sum_probs=58.7
Q ss_pred EcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 228 IGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 228 V~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
|+|||..+++++|+++|+.||.|..+++..+.. +++|||+|.+.++|.+|++.|||..+.+ .+++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~-~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG-RPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC-cEEEe
Confidence 689999999999999999999999999986543 4899999999999999999999999984 45654
No 77
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=2.7e-12 Score=103.42 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=67.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC-cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~-~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.++|||+|||.++-+.+|.++|.+||.|..|.|-...+ ..||||+|++..+|+.||..-+|+.+. +.+|+| |.+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd-g~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD-GCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC-cceEEEEecc
Confidence 68899999999999999999999999999998874333 389999999999999999999999999 678999 875
No 78
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=1.9e-11 Score=85.54 Aligned_cols=69 Identities=32% Similarity=0.572 Sum_probs=62.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 225 tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
+|+|+|||..+++++|+++|+.||.|..+++..+.. .++|||+|.+.++|..|++.++|..+.+. .+.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~-~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR-PLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe-EEEE
Confidence 489999999999999999999999999999996542 48999999999999999999999998844 5665
No 79
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.2e-11 Score=109.82 Aligned_cols=181 Identities=19% Similarity=0.273 Sum_probs=120.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEee--C-------CcC---eEEEEeCCHHHHHHHHHHhcCceeCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYK--G-------EKP---MGFALFSTAQLAVAAKDALQEMIFDA 114 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~~--~-------~kg---~aFV~F~~~~~A~~Al~~l~g~~~~~ 114 (306)
=.++||||+||++++|++|.+.|..| |.+ |++- . .+| |+|+.|+++.+.+.-+....- .
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~F----Gs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~- 329 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQF----GSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G- 329 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccc----cceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c-
Confidence 36899999999999999999999999 877 5552 1 136 999999999888776664421 1
Q ss_pred CCCCeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 115 ETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGV 194 (306)
Q Consensus 115 ~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (306)
...+.+..+-.....+.- ..+ +|.-..
T Consensus 330 --~~~~yf~vss~~~k~k~V------------QIr----------------------PW~laD----------------- 356 (520)
T KOG0129|consen 330 --EGNYYFKVSSPTIKDKEV------------QIR----------------------PWVLAD----------------- 356 (520)
T ss_pred --ccceEEEEecCcccccce------------eEE----------------------eeEecc-----------------
Confidence 123333322111110000 000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhc-cCCCceEEEEEecCC----cceEEEEEC
Q 021857 195 PPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFS-AQPGFKQMKVLRQER----HTVCFIEFE 269 (306)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~-~~G~i~~vkl~~~~~----~g~aFV~F~ 269 (306)
..+.. .....-.+.+|||||+||--++-++|..+|. .||.|..|-|-++.. +|-|=|+|.
T Consensus 357 --------------s~fv~-d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFs 421 (520)
T KOG0129|consen 357 --------------SDFVL-DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFS 421 (520)
T ss_pred --------------chhhh-ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeec
Confidence 00000 0111223589999999999999999999999 799999998887633 389999999
Q ss_pred CHHHHHHHHHH----hCCceeCCCCceeE--EeeCCcccccCC
Q 021857 270 DVNSASSVHHN----LQGAVIPSSGSVGM--RIQYPFCCFCCS 306 (306)
Q Consensus 270 ~~~~A~~Ai~~----lnG~~i~~~~~~~i--~~k~~~~~~~~~ 306 (306)
+..+=.+||.+ |+-..|. +++.| |--.--+|..|+
T Consensus 422 nqqsYi~AIsarFvql~h~d~~--KRVEIkPYv~eDq~CdeC~ 462 (520)
T KOG0129|consen 422 NQQAYIKAISARFVQLDHTDID--KRVEIKPYVMEDQLCDECG 462 (520)
T ss_pred ccHHHHHHHhhheEEEeccccc--eeeeecceeccccchhhhc
Confidence 99999999874 5555555 68899 886666676663
No 80
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.27 E-value=2.7e-11 Score=102.96 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=62.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
..+.||||+||++.+||+||+++|+.+ |.|..++ ..+++|||+|.+.++|+.|+. |+|..|. ++.|.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~----G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~---d~~I~ 74 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHC----GAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIV---DQRVC 74 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhc----CCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeC---CceEE
Confidence 356899999999999999999999999 9885442 235899999999999999995 9999998 78999
Q ss_pred EEEcc
Q 021857 122 TEMAK 126 (306)
Q Consensus 122 V~~a~ 126 (306)
|....
T Consensus 75 It~~~ 79 (243)
T PLN03121 75 ITRWG 79 (243)
T ss_pred EEeCc
Confidence 98653
No 81
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.6e-12 Score=106.17 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
...|||||++|-.++||.-|.+.|=.| |.|..|+ +.||||||+|.-.|+|..|++.||+..|+ ||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---Gr 80 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---GR 80 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---ce
Confidence 357899999999999999999999999 9996663 34799999999999999999999999999 99
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
+|+|+|+++...
T Consensus 81 tirVN~AkP~ki 92 (298)
T KOG0111|consen 81 TIRVNLAKPEKI 92 (298)
T ss_pred eEEEeecCCccc
Confidence 999999987654
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=8.7e-12 Score=104.32 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=54.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
-+.|||++|+|.+..|+|++.|++||+|+++.|+.++. +|||||+|.|.++|.+|++-.|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 36699999999999999999999999999999997653 5999999999999999998643
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.25 E-value=4.1e-11 Score=83.31 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=57.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eC----CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KG----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~----~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
+|||+|||..+++++|+++|+.+ |.+..+ .. .+|+|||+|.+.++|++|++.++|..+. |+.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~---~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG---GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC---CEEEee
Confidence 69999999999999999999999 887444 22 2599999999999999999999998887 788876
No 84
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.2e-11 Score=94.78 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE---
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM--- 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i--- 294 (306)
.+..|||.++...+||+++.+.|+-||.|+.+.|-.+.+ +|||+|+|++.++|++||++|||..|.+. .++|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q-~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ-NVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC-ceeEEEE
Confidence 367899999999999999999999999999999987665 49999999999999999999999999965 6999
Q ss_pred EeeCC
Q 021857 295 RIQYP 299 (306)
Q Consensus 295 ~~k~~ 299 (306)
|.+-|
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 66666
No 85
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=1e-09 Score=99.20 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=64.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
...++|||+|||.++|++.|++-|..||.|..++|+. ..+..+.|.|.++++|++|+..|||..+.+. -++| |
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-~GkskGVVrF~s~edAEra~a~Mngs~l~Gr-~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-NGKSKGVVRFFSPEDAERACALMNGSRLDGR-NIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc-cCCccceEEecCHHHHHHHHHHhccCcccCc-eeeeee
Confidence 3568899999999999999999999999999999984 3335569999999999999999999999976 4887 6
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=5.4e-11 Score=102.63 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=71.5
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcC
Q 021857 38 YDNTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQE 109 (306)
Q Consensus 38 ~~~~~~~~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g 109 (306)
|..+..+..+|-+||||+-|+++++|++|+..|+.| |.|-+|+ ..+|||||+|++..+...|....+|
T Consensus 90 P~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~Y----G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKY----GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred CCCCCcccCCccceeeeeeccccccHHHHHHHHHhc----CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 344556667899999999999999999999999999 9994442 3579999999999999999999999
Q ss_pred ceeCCCCCCeEEEEEcc
Q 021857 110 MIFDAETKSVLHTEMAK 126 (306)
Q Consensus 110 ~~~~~~~g~~i~V~~a~ 126 (306)
+.|+ |+.|.|.+-.
T Consensus 166 ~~Id---grri~VDvER 179 (335)
T KOG0113|consen 166 IKID---GRRILVDVER 179 (335)
T ss_pred ceec---CcEEEEEecc
Confidence 9999 8999998753
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.23 E-value=1.5e-11 Score=100.79 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=65.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--------eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--------~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
++..+|-|-||-+.+|.|+|+.+|++| |.|.+| +..+|||||.|.+..+|+.||+.|+|..|+ |+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld---gR 83 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD---GR 83 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHh----CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec---cc
Confidence 567899999999999999999999999 666433 235799999999999999999999999999 99
Q ss_pred eEEEEEcc
Q 021857 119 VLHTEMAK 126 (306)
Q Consensus 119 ~i~V~~a~ 126 (306)
.|+|.+|+
T Consensus 84 elrVq~ar 91 (256)
T KOG4207|consen 84 ELRVQMAR 91 (256)
T ss_pred eeeehhhh
Confidence 99999885
No 88
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=2.9e-11 Score=112.50 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
++|||||+|++++||+|..+|+.. |.|+.++ +.|||||++|.+.++|++|++.|||.++. ||.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~---gr~l~ 91 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN---GRKLR 91 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC---CceEE
Confidence 999999999999999999999999 9886663 23699999999999999999999999998 89999
Q ss_pred EEEccccch
Q 021857 122 TEMAKKNLF 130 (306)
Q Consensus 122 V~~a~~~~~ 130 (306)
|+|+.....
T Consensus 92 v~~~~~~~~ 100 (435)
T KOG0108|consen 92 VNYASNRKN 100 (435)
T ss_pred eecccccch
Confidence 999865544
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=6.3e-11 Score=102.22 Aligned_cols=77 Identities=22% Similarity=0.356 Sum_probs=68.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
...|-+||||+-|+.+++|.+|+..|+.||.|+.|+|+.+. .+|||||+|+++-+...|.+..+|..|.+. ++.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr-ri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR-RILV 175 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc-EEEE
Confidence 44578999999999999999999999999999999999652 359999999999999999999999999954 6777
Q ss_pred -Ee
Q 021857 295 -RI 296 (306)
Q Consensus 295 -~~ 296 (306)
|-
T Consensus 176 DvE 178 (335)
T KOG0113|consen 176 DVE 178 (335)
T ss_pred Eec
Confidence 53
No 90
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=1.3e-11 Score=106.00 Aligned_cols=70 Identities=27% Similarity=0.456 Sum_probs=64.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 225 tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.|||+|||..+++.+|+.+|++||.|.+++|+. .||||..++.+.|..||..|||+.|+|- .+.| =||+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~-nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGV-NINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecce-EEEEEecccc
Confidence 499999999999999999999999999999994 5999999999999999999999999955 5888 77765
No 91
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.3e-11 Score=102.07 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEec----CCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ----ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~----~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
..+||||++|...+||.-|...|-.||+|+.|++..+ +.+|||||+|+..++|..||+.||+-++-|+ -++| |+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr-tirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR-TIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce-eEEEeec
Confidence 3789999999999999999999999999999998743 2349999999999999999999999999965 6899 98
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
|.+
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 864
No 92
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3.5e-11 Score=100.76 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=59.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE---e-----eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVN---Y-----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~---~-----~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
-.+||||+|+|.++.|+|++.|+.| |+|+. | .++||||||+|+|.++|++|.+..| -.|+ ||.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqf----GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId---GR~a 83 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQF----GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID---GRKA 83 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHh----CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc---cccc
Confidence 4689999999999999999999999 88843 2 1457999999999999999998554 2457 8888
Q ss_pred EEEEccc
Q 021857 121 HTEMAKK 127 (306)
Q Consensus 121 ~V~~a~~ 127 (306)
.+++|..
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 8887743
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=4.4e-11 Score=98.10 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=64.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..+|.|-||-..++.++|+.+|++||.|-+|.|..+.. .|||||.|-+..+|+.|+++|+|..|.|. -++|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR-elrV 87 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR-ELRV 87 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc-eeee
Confidence 57799999999999999999999999999999986543 49999999999999999999999999976 4777
No 94
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=5.7e-11 Score=113.84 Aligned_cols=74 Identities=16% Similarity=0.330 Sum_probs=68.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
++||||+.|+.+++++||.++|+.||+|.+|+++. .+ +||||.+.+.++|.+|+++|+++.+. .+.++| |+.++
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R-~cAfI~M~~RqdA~kalqkl~n~kv~-~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PR-GCAFIKMVRRQDAEKALQKLSNVKVA-DKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CC-ceeEEEEeehhHHHHHHHHHhccccc-ceeeEEeeeccC
Confidence 79999999999999999999999999999999995 33 79999999999999999999999999 568999 88654
No 95
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=7.1e-11 Score=90.52 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------C--CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
-++--|||.++...+|||++.+.|..| |.|.++. + .||||+|+|.+.++|+.|++.|||..|. |.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dy----GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll---~q 142 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADY----GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL---GQ 142 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhc----ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---CC
Confidence 356789999999999999999999999 9985542 2 2799999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 021857 119 VLHTEMAKKN 128 (306)
Q Consensus 119 ~i~V~~a~~~ 128 (306)
.|.|.|+..+
T Consensus 143 ~v~VDw~Fv~ 152 (170)
T KOG0130|consen 143 NVSVDWCFVK 152 (170)
T ss_pred ceeEEEEEec
Confidence 9999998544
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.14 E-value=3.6e-10 Score=78.89 Aligned_cols=67 Identities=27% Similarity=0.385 Sum_probs=58.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--C-----CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--~-----~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
+|+|+|||..+++++|+++|+.+ |.|..+. . .+|+|||+|.+.++|..|++.+++..+. |+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~----g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~---~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF----GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG---GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc----CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEe
Confidence 58999999999999999999999 8774442 1 2699999999999999999999999987 7898886
Q ss_pred E
Q 021857 124 M 124 (306)
Q Consensus 124 ~ 124 (306)
|
T Consensus 74 ~ 74 (74)
T cd00590 74 F 74 (74)
T ss_pred C
Confidence 4
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.14 E-value=1.7e-10 Score=101.49 Aligned_cols=74 Identities=32% Similarity=0.545 Sum_probs=66.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..+|||+|||.++|+++|.++|..||.|..+++..+. .+|||||+|.+.++|..|+..|||..|.|. +++| +..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~-~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR-PLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc-eeEeeccc
Confidence 6899999999999999999999999999999998653 249999999999999999999999999955 7888 653
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.14 E-value=8.4e-11 Score=109.40 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=68.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
++|||||+|+++++|+|.++|+..|.|.++|++.|+. +||||++|.+.++|.+|+..|||.++.|. +++| |..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr-~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR-KLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc-eEEeecccc
Confidence 7899999999999999999999999999999996543 39999999999999999999999999966 7999 8765
No 99
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=9.8e-12 Score=99.96 Aligned_cols=71 Identities=21% Similarity=0.398 Sum_probs=65.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
+.-|||+|||...||.+|.-+|++||+|+.|.|+++.+ +||||+.|+|..+..-|+..|||..|.|. -++|
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR-tirV 109 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR-TIRV 109 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce-eEEe
Confidence 45599999999999999999999999999999998764 49999999999999999999999999966 5788
No 100
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1.3e-10 Score=108.09 Aligned_cols=174 Identities=17% Similarity=0.085 Sum_probs=112.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
.-..++|+|-|||..|++++|+.+|+.| |+|..|+ ..+|..||+|-|..+|++|++.|++..+. |+.|..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~---~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIA---GKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhh----cchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhh---hhhhcC
Confidence 3457899999999999999999999999 8885554 34699999999999999999999999997 666651
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
+...... ...... ...|..-... -...+
T Consensus 145 ----~~~~~~~---------------~~~~~~---------------~~~~~~~~~p----~a~s~-------------- 172 (549)
T KOG4660|consen 145 ----PGGARRA---------------MGLQSG---------------TSFLNHFGSP----LANSP-------------- 172 (549)
T ss_pred ----CCccccc---------------chhccc---------------chhhhhccch----hhcCC--------------
Confidence 1100000 000000 0000000000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhC
Q 021857 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
+.+ -+...+|.- |....+..-+.-.|+.+|.+.. +.....+ ..-|++|.+..++..+...+
T Consensus 173 -----pgg----------~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-hq~~~~~~~~~s~a~~~~~~- 233 (549)
T KOG4660|consen 173 -----PGG----------WPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLN-HQRFVEFADNRSYAFSEPRG- 233 (549)
T ss_pred -----CCC----------CcCCcceee-eccchhhhhhhcchhccCcccc-ccccchh-hhhhhhhccccchhhcccCC-
Confidence 000 011223333 8888888777888899998877 6654333 36789999999997777655
Q ss_pred CceeCCCCceeE-EeeC
Q 021857 283 GAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 283 G~~i~~~~~~~i-~~k~ 298 (306)
|+.+.++ .+-+ |++.
T Consensus 234 G~~~s~~-~~v~t~S~~ 249 (549)
T KOG4660|consen 234 GFLISNS-SGVITFSGP 249 (549)
T ss_pred ceecCCC-CceEEecCC
Confidence 7777755 4666 7753
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.10 E-value=4.3e-10 Score=77.69 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=54.2
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 54 ITGLPDDVKERELQNLLRWLPGYEASQVNY--K------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 54 V~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
|+|||..+++++|+++|+.+ |.+..+ . ..+|+|||+|.+.++|..|++.|++..+. |+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~---~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF----GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD---GRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh----CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC---CcEEEeC
Confidence 68999999999999999999 877443 1 12589999999999999999999999987 7888763
No 102
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.6e-10 Score=101.62 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=67.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
.-.||||++|-..++|.+|++.|.+||+|+++.++. ++++|||+|.+.++|+.|.+.+-+..+-.+.+++| |++.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 368899999999999999999999999999999996 33699999999999999998777766666779999 9987
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=8.2e-12 Score=100.41 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=64.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.=|||||||+++||.||..+|+.| |.||+|. .++||||+.|+|+.+--.|+..|||..|. ||+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRt 106 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRT 106 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec---cee
Confidence 35679999999999999999999999 9997762 34799999999999999999999999998 899
Q ss_pred EEEEEc
Q 021857 120 LHTEMA 125 (306)
Q Consensus 120 i~V~~a 125 (306)
|+|.-.
T Consensus 107 irVDHv 112 (219)
T KOG0126|consen 107 IRVDHV 112 (219)
T ss_pred EEeeec
Confidence 999754
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=7.7e-10 Score=74.06 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=46.4
Q ss_pred HHHHHhhcCCCcCcEEEee--CCc-CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 66 LQNLLRWLPGYEASQVNYK--GEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 66 L~~~f~~~~~~~g~iv~~~--~~k-g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
|+++|++| |.|.++. ..+ ++|||+|.+.++|+.|++.|||..+. |++|+|+||
T Consensus 1 L~~~f~~f----G~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~---g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN---GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET---TEEEEEEEE
T ss_pred ChHHhCCc----ccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEC
Confidence 67899999 9996663 334 99999999999999999999999998 899999986
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=9.5e-11 Score=114.01 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=127.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEeeC-----CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKG-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~~~-----~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
-.++|||++||+..+++.+|+..|..+ |.+ |.|++ ..-||||.|.+...+-.|...+.+..|.+ | .
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~----gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~--g-~ 442 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDES----GKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN--G-T 442 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhh----ccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc--C-c
Confidence 458999999999999999999999999 888 55542 23899999999998888888888877763 2 3
Q ss_pred EEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 120 i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
+++.+...+
T Consensus 443 ~r~glG~~k----------------------------------------------------------------------- 451 (975)
T KOG0112|consen 443 HRIGLGQPK----------------------------------------------------------------------- 451 (975)
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 343333110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH 279 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~ 279 (306)
..+.+.|+|++|...+....|..+|..||.|..|.+. ++. -||+|.|++...|+.|+.
T Consensus 452 --------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq-~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 452 --------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQ-PYAYIQYESPPAAQAATH 509 (975)
T ss_pred --------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCC-cceeeecccCccchhhHH
Confidence 1135779999999999999999999999999998886 333 799999999999999999
Q ss_pred HhCCceeCCC-CceeE-EeeCCcc
Q 021857 280 NLQGAVIPSS-GSVGM-RIQYPFC 301 (306)
Q Consensus 280 ~lnG~~i~~~-~~~~i-~~k~~~~ 301 (306)
.|-|+.|++. .+++| |+..|++
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCC
Confidence 9999999975 56777 9998875
No 106
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.06 E-value=1.9e-10 Score=92.70 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=63.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..||||+||+..++++.|+++|-+.|.|+.+++..+. ..|||||+|.++++|+-|++-||...+.|. +++|
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr-pIrv 83 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR-PIRV 83 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc-eeEE
Confidence 6789999999999999999999999999999887432 349999999999999999999999999854 7777
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=1.9e-09 Score=75.64 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=44.8
Q ss_pred HHHHHHhhc----cCCCceEEE-EE-ec-----CCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 237 EEELRGLFS----AQPGFKQMK-VL-RQ-----ERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 237 ~e~L~~~F~----~~G~i~~vk-l~-~~-----~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
+++|+++|+ .||.|.+|. +. .+ ..+|+|||+|.+.++|.+|+..|||..+.|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 678888888 999999985 43 22 1249999999999999999999999999954
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.96 E-value=1.4e-09 Score=104.48 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=66.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~ 126 (306)
.||||||+|+..++|.||..+|+.| |.|..| ...||||||.+....+|.+||+.|++..+. ++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~---~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA---DKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc----ccceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc---ceeeEEeeec
Confidence 6899999999999999999999999 999544 577999999999999999999999999997 6999999985
Q ss_pred cc
Q 021857 127 KN 128 (306)
Q Consensus 127 ~~ 128 (306)
.+
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 44
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=5.7e-09 Score=97.96 Aligned_cols=178 Identities=17% Similarity=0.252 Sum_probs=120.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcC---C--C--cCc-EEE--eeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLP---G--Y--EAS-QVN--YKGEKPMGFALFSTAQLAVAAKDALQEMIFDAE 115 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~---~--~--~g~-iv~--~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~ 115 (306)
.-.++.+||+++++.++++.+..+|..-. + . .|. ++. +...+.++|++|.+.++|..|+. +++..+.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~-- 248 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGIIFE-- 248 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccchhhC--
Confidence 35689999999999999999999998652 1 1 122 333 34557999999999999999997 7777666
Q ss_pred CCCeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 116 TKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVP 195 (306)
Q Consensus 116 ~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (306)
|.++++.--...... +.......+.
T Consensus 249 -g~~~~~~r~~d~~~~--------------------------p~~~~~~~~~---------------------------- 273 (500)
T KOG0120|consen 249 -GRPLKIRRPHDYQPV--------------------------PGITLSPSQL---------------------------- 273 (500)
T ss_pred -CCCceecccccccCC--------------------------ccchhhhccc----------------------------
Confidence 666654321100000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCH
Q 021857 196 PVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDV 271 (306)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~ 271 (306)
......+...........+||+|||..+++++++++.+.||.++..+++.+. ++||||-+|-+.
T Consensus 274 ------------~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dp 341 (500)
T KOG0120|consen 274 ------------GKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDP 341 (500)
T ss_pred ------------cccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCC
Confidence 0000000000011124669999999999999999999999999988888533 359999999999
Q ss_pred HHHHHHHHHhCCceeCCCCceeE
Q 021857 272 NSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 272 ~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
.-...|+..|||..++++ .+.|
T Consensus 342 svtd~A~agLnGm~lgd~-~lvv 363 (500)
T KOG0120|consen 342 SVTDQAIAGLNGMQLGDK-KLVV 363 (500)
T ss_pred cchhhhhcccchhhhcCc-eeEe
Confidence 999999999999999955 4544
No 110
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.94 E-value=1e-08 Score=85.25 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC-----cceEEEEECCHHHHHHHHHHhCCceeCC--CCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPS--SGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~-----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~--~~~~~i 294 (306)
..+||||.+||.++-.-+|+.+|..|-+.+...|-...+ +.+|||+|.+.++|..|+.+|||..++- ..-+.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 369999999999999999999999998777644432222 2799999999999999999999998865 345777
Q ss_pred -EeeCCc
Q 021857 295 -RIQYPF 300 (306)
Q Consensus 295 -~~k~~~ 300 (306)
++|.--
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 777543
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=3.9e-10 Score=93.38 Aligned_cols=132 Identities=16% Similarity=0.228 Sum_probs=108.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
+..+||||+||...+||+-|.++|=.. |.|+++. ...-||||.|.++-+...|++.|||.+++ +..|
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~---~~e~ 79 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE---EDEE 79 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc---cchh
Confidence 467999999999999999999999998 9997773 12259999999999999999999999998 6666
Q ss_pred EEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (306)
.|.+-
T Consensus 80 q~~~r--------------------------------------------------------------------------- 84 (267)
T KOG4454|consen 80 QRTLR--------------------------------------------------------------------------- 84 (267)
T ss_pred hcccc---------------------------------------------------------------------------
Confidence 55432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcC----CCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHH
Q 021857 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGN----LGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNS 273 (306)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~tLfV~N----Lp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~ 273 (306)
-|| |...++++.+..+|+.-|.+..+++-+..+ ..++||++-...+
T Consensus 85 ---------------------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 85 ---------------------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred ---------------------------cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 222 566689999999999999999988875433 4789999888888
Q ss_pred HHHHHHHhCCceeC
Q 021857 274 ASSVHHNLQGAVIP 287 (306)
Q Consensus 274 A~~Ai~~lnG~~i~ 287 (306)
.-.++....|.+.-
T Consensus 138 ~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 138 VPFALDLYQGLELF 151 (267)
T ss_pred CcHHhhhhcccCcC
Confidence 88888888887665
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.5e-09 Score=92.47 Aligned_cols=77 Identities=23% Similarity=0.288 Sum_probs=66.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.+++|+|||-.||.+.++.||...|-.| |.||.-+ .+|.||||.|++..+|+.|+..|||+.|. =
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PF----GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG---M 354 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPF----GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG---M 354 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccc----cceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh---h
Confidence 4789999999999999999999999999 9886542 35799999999999999999999999996 3
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|...+++.
T Consensus 355 KRLKVQLKRPkd 366 (371)
T KOG0146|consen 355 KRLKVQLKRPKD 366 (371)
T ss_pred hhhhhhhcCccc
Confidence 788887765443
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.88 E-value=6.9e-09 Score=72.81 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=45.4
Q ss_pred CHHHHHHHHhhcCCCcCcEEEe------e-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 62 KERELQNLLRWLPGYEASQVNY------K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 62 tee~L~~~f~~~~~~~g~iv~~------~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
.+++|+++|+..+..+|.+.++ + .+||+|||+|.+.++|.+|++.|||..+. |+.|++
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~---gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD---GRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEe
Confidence 3689999999333333766332 1 24799999999999999999999999998 898875
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.5e-09 Score=93.45 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=72.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc----ceEEEEECCHHHHHHHHHHhCCceeCCCCce
Q 021857 217 TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH----TVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (306)
Q Consensus 217 ~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~----g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~ 292 (306)
....||..+|||--|.+.+|+|+|.-+|+.||.|+++.++++.+. .||||+|++.++.++|.=.|.+.-|... ++
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr-RI 311 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR-RI 311 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc-eE
Confidence 345678899999999999999999999999999999999987653 8999999999999999999999999944 78
Q ss_pred eE-EeeC
Q 021857 293 GM-RIQY 298 (306)
Q Consensus 293 ~i-~~k~ 298 (306)
-| ||.+
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 88 8753
No 115
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.83 E-value=6.5e-10 Score=100.07 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=116.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLP-GYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~-~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~~ 128 (306)
.+|||+||.+.++.+||..+|.... +..|..+ + ..||+||.+.+...|.+|++.++|+.-.. |+.+.|+++-.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-~--k~gyafvd~pdq~wa~kaie~~sgk~elq--Gkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-V--KSGYAFVDCPDQQWANKAIETLSGKVELQ--GKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-e--ecceeeccCCchhhhhhhHHhhchhhhhc--CceeeccchhhH
Confidence 4799999999999999999998652 2222222 2 24999999999999999999999985432 899999887555
Q ss_pred chhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 129 LFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAP 208 (306)
Q Consensus 129 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (306)
....
T Consensus 77 kqrs---------------------------------------------------------------------------- 80 (584)
T KOG2193|consen 77 KQRS---------------------------------------------------------------------------- 80 (584)
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 4322
Q ss_pred CCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC-cceEEEEECCHHHHHHHHHHhCCceeC
Q 021857 209 SSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 209 ~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~-~g~aFV~F~~~~~A~~Ai~~lnG~~i~ 287 (306)
+.+-|+|+|....++.|..+...||.+..+..+.... .-.--|+|.+.+.+..||..|||..+.
T Consensus 81 ---------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 81 ---------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred ---------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 2266999999999999999999999998876653222 233457899999999999999999998
Q ss_pred CCCceeE-Ee
Q 021857 288 SSGSVGM-RI 296 (306)
Q Consensus 288 ~~~~~~i-~~ 296 (306)
+. .++| |-
T Consensus 146 n~-~~k~~Yi 154 (584)
T KOG2193|consen 146 NQ-HLKVGYI 154 (584)
T ss_pred hh-hhhcccC
Confidence 43 5777 63
No 116
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.81 E-value=1.3e-08 Score=97.01 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC-------CcceEEEEECCHHHHHHHHHHhCCceeCCCCcee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-------RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~-------~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~ 293 (306)
|-.+.|||+||+..++++.|...|..||.|.+||||-.. .+.||||-|.+..+|++|++.|||..|. +..|+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~-~~e~K 250 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM-EYEMK 250 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee-eeeee
Confidence 345779999999999999999999999999999999322 1389999999999999999999999999 55799
Q ss_pred E-EeeC
Q 021857 294 M-RIQY 298 (306)
Q Consensus 294 i-~~k~ 298 (306)
+ |+|.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 9 9963
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=90.22 Aligned_cols=182 Identities=12% Similarity=0.126 Sum_probs=108.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCC----CcCcEEEee-CCc--CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPG----YEASQVNYK-GEK--PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~----~~g~iv~~~-~~k--g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
-|=.++||++.|+.|+.++|-..|- .+|.+..-+ .+| |-|||.|...++|+.||.. +...|. -|.|.+-
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG---qRYIElF 238 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIG---QRYIELF 238 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHh---HHHHHHH
Confidence 4568999999999999999975442 333332223 334 9999999999999999983 444443 1444333
Q ss_pred EccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (306)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (306)
.+......+- . ++ ..+.... ....++..
T Consensus 239 RSTaaEvqqv-l----------nr------~~s~pLi---~~~~sp~~-------------------------------- 266 (508)
T KOG1365|consen 239 RSTAAEVQQV-L----------NR------EVSEPLI---PGLTSPLL-------------------------------- 266 (508)
T ss_pred HHhHHHHHHH-H----------Hh------hcccccc---CCCCCCCC--------------------------------
Confidence 2222111000 0 00 0000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCC-ceE--EEEEecCCc---ceEEEEECCHHHHHHH
Q 021857 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPG-FKQ--MKVLRQERH---TVCFIEFEDVNSASSV 277 (306)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~-i~~--vkl~~~~~~---g~aFV~F~~~~~A~~A 277 (306)
+.. +..-.........|-+++||...+.|+|.++|.-|-. |+. |.++.+..+ |-|||+|.+.++|..|
T Consensus 267 ----p~~--p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aa 340 (508)
T KOG1365|consen 267 ----PGG--PARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAA 340 (508)
T ss_pred ----CCC--ccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHH
Confidence 000 0000111222456889999999999999999998853 544 777755443 9999999999999999
Q ss_pred HHHhCCceeCCCCceeEE
Q 021857 278 HHNLQGAVIPSSGSVGMR 295 (306)
Q Consensus 278 i~~lnG~~i~~~~~~~i~ 295 (306)
.+..|.....+. -+.||
T Consensus 341 aqk~hk~~mk~R-YiEvf 357 (508)
T KOG1365|consen 341 AQKCHKKLMKSR-YIEVF 357 (508)
T ss_pred HHHHHHhhcccc-eEEEe
Confidence 999888777523 34443
No 118
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=4e-09 Score=98.30 Aligned_cols=72 Identities=24% Similarity=0.361 Sum_probs=64.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCcee
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~ 293 (306)
..+.++|+|-|||..+++++|..+|+.||+|+.|+..+..+ |..||+|-|..+|++|+++||+.+|.|. +++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-~~~~v~FyDvR~A~~Alk~l~~~~~~~~-~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-GIVFVEFYDVRDAERALKALNRREIAGK-RIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-ceEEEEEeehHhHHHHHHHHHHHHhhhh-hhc
Confidence 34678999999999999999999999999999988876444 8999999999999999999999999954 443
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.77 E-value=3.9e-08 Score=91.79 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=67.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
..-+|+|||.+|+..+.-.||+++|++|..++|..|... +.|.||||++++-++|.+||+.|+...|. |+-|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH---GrmIS 478 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH---GRMIS 478 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc---ceeee
Confidence 345899999999999999999999999944444433321 34799999999999999999999999999 99999
Q ss_pred EEEccccc
Q 021857 122 TEMAKKNL 129 (306)
Q Consensus 122 V~~a~~~~ 129 (306)
|+-+|..-
T Consensus 479 VEkaKNEp 486 (940)
T KOG4661|consen 479 VEKAKNEP 486 (940)
T ss_pred eeecccCc
Confidence 99887553
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=2e-08 Score=88.67 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=62.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--eeCCcCeEEEEeCCHHHHHHHHHHhcC-ceeCCCCCCeEEEEE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YKGEKPMGFALFSTAQLAVAAKDALQE-MIFDAETKSVLHTEM 124 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--~~~~kg~aFV~F~~~~~A~~Al~~l~g-~~~~~~~g~~i~V~~ 124 (306)
-..||||++|...++|.||++.|..| |.|.. +-..+++|||+|.+.+.|+.|.+.+-. ..+. |+.|.|.|
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~---G~Rl~i~W 299 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVIN---GFRLKIKW 299 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhc----CCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeec---ceEEEEEe
Confidence 36799999999999999999999999 99944 445679999999999999998887644 3456 89999999
Q ss_pred ccc
Q 021857 125 AKK 127 (306)
Q Consensus 125 a~~ 127 (306)
++.
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 977
No 121
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.72 E-value=1.2e-06 Score=81.02 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=55.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCC-CcCcEEEe-eCCc--CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPG-YEASQVNY-KGEK--PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~-~~g~iv~~-~~~k--g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
....|=+++||+.+|++||.++|+..-- ..|..+.+ ...| |-|||+|++.+.|+.||. -+...|. .|-|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iG---hRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIG---HRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhc---cceEEee
Confidence 3568899999999999999999998721 11111222 2233 999999999999999998 5666776 3788877
Q ss_pred Ecc
Q 021857 124 MAK 126 (306)
Q Consensus 124 ~a~ 126 (306)
.+.
T Consensus 178 ~Ss 180 (510)
T KOG4211|consen 178 RSS 180 (510)
T ss_pred hhH
Confidence 653
No 122
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.63 E-value=2.8e-07 Score=68.31 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=62.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CCcCcE-EEe--e--CCcCeEEEEeCCHHHHHHHHHHhcCceeC-CCCCCeEEE
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLP-GYEASQ-VNY--K--GEKPMGFALFSTAQLAVAAKDALQEMIFD-AETKSVLHT 122 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~-~~~g~i-v~~--~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~-~~~g~~i~V 122 (306)
+||.|+|||...|.++|.+++...+ |.+--+ +.+ + .+.|||||.|.+.+.|.+-.+.++|..+. ....+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999999764 222222 222 2 34699999999999999999999999983 223688899
Q ss_pred EEcccc
Q 021857 123 EMAKKN 128 (306)
Q Consensus 123 ~~a~~~ 128 (306)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 998544
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=5.4e-09 Score=101.63 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=105.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEe------eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~------~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
.++||+||+..+.++||+..|..+ |.+ +++ +.-||+|+|.|.+.++|.+|+....+. +. |
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~----~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~---g---- 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPS----GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FF---G---- 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCcc----chhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hh---h----
Confidence 567999999999999999999888 554 221 133699999999999999999843322 22 1
Q ss_pred EEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (306)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (306)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHH
Q 021857 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVH 278 (306)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai 278 (306)
...|||+|+|+..|.++|+.+|..+|.++++++++... +|.|+|.|.++.+|.+++
T Consensus 736 ---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 736 ---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKV 794 (881)
T ss_pred ---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhc
Confidence 12389999999999999999999999999999886554 399999999999999999
Q ss_pred HHhCCceeCCCCceeE
Q 021857 279 HNLQGAVIPSSGSVGM 294 (306)
Q Consensus 279 ~~lnG~~i~~~~~~~i 294 (306)
..+.+..+... .+.|
T Consensus 795 ~s~d~~~~rE~-~~~v 809 (881)
T KOG0128|consen 795 ASVDVAGKREN-NGEV 809 (881)
T ss_pred ccchhhhhhhc-Cccc
Confidence 98888877633 3555
No 124
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=79.77 Aligned_cols=71 Identities=25% Similarity=0.508 Sum_probs=63.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..+||.+.|..+++++.|...|.+|-.+...+++++.+ +||+||.|.+.+++.+||..|||..+++. +++.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr-pikl 264 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR-PIKL 264 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccc-hhHh
Confidence 56799999999999999999999999999999887654 49999999999999999999999999843 4543
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.61 E-value=1.3e-07 Score=78.11 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=61.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC-CCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQ-PGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~-G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
....+||..+|.-+.+.++...|.+| |.+.++++-++.+ +|||||+|++++-|.-|-+.||||-+.+. .+.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~-lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH-LLEC 124 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh-eeee
Confidence 35679999999999999999999998 5677888855443 49999999999999999999999998843 4555
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.60 E-value=6.6e-08 Score=86.10 Aligned_cols=165 Identities=15% Similarity=0.226 Sum_probs=114.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe-----e---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~-----~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
...++|++++.+.+.+.++..++... |..+.. . ..+|++.|.|...+.+..|+.......++ ++.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~----g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~---~~~ 159 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEA----GLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLD---GNK 159 (285)
T ss_pred ccccccccccccchhhccccccchhh----cCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccc---ccc
Confidence 46799999999999999888888888 654332 1 34799999999999999999844333444 233
Q ss_pred EEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 120 i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
+.....+....... ...
T Consensus 160 ~~~dl~~~~~~~~~------------------n~~--------------------------------------------- 176 (285)
T KOG4210|consen 160 GEKDLNTRRGLRPK------------------NKL--------------------------------------------- 176 (285)
T ss_pred ccCccccccccccc------------------chh---------------------------------------------
Confidence 33222211110000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~ 275 (306)
.....+++...++|+||+.++++++|+..|..+|.|..+++..... +|||+|.|.+...+.
T Consensus 177 ---------------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 177 ---------------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred ---------------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 0000111233355999999999999999999999999999986443 399999999999999
Q ss_pred HHHHHhCCceeCCCCceeE-EeeCC
Q 021857 276 SVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 276 ~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.++.. +...|.+. .+.| |++.-
T Consensus 242 ~~~~~-~~~~~~~~-~~~~~~~~~~ 264 (285)
T KOG4210|consen 242 LALND-QTRSIGGR-PLRLEEDEPR 264 (285)
T ss_pred HHhhc-ccCcccCc-ccccccCCCC
Confidence 99998 77777743 5666 66543
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.59 E-value=1.5e-07 Score=81.14 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=64.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc---ceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH---TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~---g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..+|+|.|||..+++++|+++|..||.++.+-+..+..+ |.|=|.|...++|.+||+.+||..+.|. .|+|
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~-~mk~ 156 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR-PMKI 156 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc-eeee
Confidence 477999999999999999999999999988888866654 9999999999999999999999888855 6877
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1e-07 Score=89.10 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
-++.|||.+|...+--.+|+.||++||.|+-.+++++.+ ..|+||++.+-++|.+||+.||-.+|+|. -|.| -+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr-mISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR-MISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce-eeeeeec
Confidence 468899999999999999999999999999999997655 38999999999999999999999999954 5677 88
Q ss_pred eCCcc
Q 021857 297 QYPFC 301 (306)
Q Consensus 297 k~~~~ 301 (306)
||...
T Consensus 483 KNEp~ 487 (940)
T KOG4661|consen 483 KNEPG 487 (940)
T ss_pred ccCcc
Confidence 88653
No 129
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=4.8e-08 Score=82.43 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=62.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 225 tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.+||++||+.+.+.+|..+|..||.|..|.+.. ||+||+|++..+|.-|+--|||.+|.+.. +.+ |++
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e~-~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGER-LVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceeccee-eeeeccc
Confidence 599999999999999999999999999999875 89999999999999999999999999764 666 877
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.47 E-value=7.4e-07 Score=66.05 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=57.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccC--CCceEEEEEec----CCcceEEEEECCHHHHHHHHHHhCCceeCCC---CceeE
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVLRQ----ERHTVCFIEFEDVNSASSVHHNLQGAVIPSS---GSVGM 294 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~--G~i~~vkl~~~----~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~---~~~~i 294 (306)
+||.|+|||...|.++|.+++... |...-+-+.-+ .+.|||||.|.+++.|.+-.+.+||+.+... +...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888643 44544444433 2349999999999999999999999998743 33344
Q ss_pred -Eee
Q 021857 295 -RIQ 297 (306)
Q Consensus 295 -~~k 297 (306)
|++
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 665
No 131
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.44 E-value=2.1e-07 Score=83.38 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=114.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
...|.|.||.+++|.|+++.||..+ |.|-.++ .....|||.|.|..++..|.. |.+..+- +
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~l----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv---d 78 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNL----GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFV---D 78 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhc----cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceee---e
Confidence 3489999999999999999999888 7773221 224789999999999999988 6565553 3
Q ss_pred CeEEE-EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 118 SVLHT-EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPP 196 (306)
Q Consensus 118 ~~i~V-~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (306)
+.|.| -|+..-.- +..++..............+ .+.+ ++..++..++. .+
T Consensus 79 raliv~p~~~~~~p-------~r~af~~l~~~navprll~p------------------dg~L-p~~~~lt~~nh---~p 129 (479)
T KOG4676|consen 79 RALIVRPYGDEVIP-------DRFAFVELADQNAVPRLLPP------------------DGVL-PGDRPLTKINH---SP 129 (479)
T ss_pred eeEEEEecCCCCCc-------cHHHHHhcCcccccccccCC------------------CCcc-CCCCccccccC---Cc
Confidence 55555 44421110 00001000000000000000 0000 00001111110 01
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHH
Q 021857 197 VQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276 (306)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~ 276 (306)
..... .+...+.........-.+|++|.+|+..+...++.++|+.+|+|...++..+.+..++.|+|....+...
T Consensus 130 ~ailk-----tP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~h 204 (479)
T KOG4676|consen 130 NAILK-----TPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKH 204 (479)
T ss_pred cceec-----CCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHH
Confidence 00000 0111111111111123589999999999999999999999999999888876666788899999998888
Q ss_pred HHHHhCCceeC
Q 021857 277 VHHNLQGAVIP 287 (306)
Q Consensus 277 Ai~~lnG~~i~ 287 (306)
|+.. +|+++.
T Consensus 205 alr~-~gre~k 214 (479)
T KOG4676|consen 205 ALRS-HGRERK 214 (479)
T ss_pred HHHh-cchhhh
Confidence 8764 777665
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.43 E-value=6.4e-06 Score=73.90 Aligned_cols=156 Identities=11% Similarity=0.100 Sum_probs=101.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCC-cCcEEEe--eCCc-CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGY-EASQVNY--KGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~-~g~iv~~--~~~k-g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
.+..|=.++||+..++.++..+|...--. -|..+.. .+.| |.|.|.|.|.|.=+.|++ .+...+. +|.|.|-
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g---~ryievY 134 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMG---TRYIEVY 134 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhcc---CCceeee
Confidence 34556678999999999999999866322 2333333 2344 999999999988888887 4444555 6888876
Q ss_pred EccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (306)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (306)
-+...+..+-. .+ .+.
T Consensus 135 ka~ge~f~~ia---gg--------------------~s~----------------------------------------- 150 (508)
T KOG1365|consen 135 KATGEEFLKIA---GG--------------------TSN----------------------------------------- 150 (508)
T ss_pred ccCchhheEec---CC--------------------ccc-----------------------------------------
Confidence 66444432210 00 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhc---cCC-CceEEEEEec--CC-cceEEEEECCHHHHHH
Q 021857 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFS---AQP-GFKQMKVLRQ--ER-HTVCFIEFEDVNSASS 276 (306)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~---~~G-~i~~vkl~~~--~~-~g~aFV~F~~~~~A~~ 276 (306)
......+....-.|-.++||+++++.++.++|. ..+ ..+.|-++.. ++ .|-|||.|..+++|+.
T Consensus 151 ---------e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~ 221 (508)
T KOG1365|consen 151 ---------EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQF 221 (508)
T ss_pred ---------cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHH
Confidence 000000000123466899999999999999995 333 4556655543 22 2999999999999999
Q ss_pred HHHH
Q 021857 277 VHHN 280 (306)
Q Consensus 277 Ai~~ 280 (306)
|+..
T Consensus 222 aL~k 225 (508)
T KOG1365|consen 222 ALRK 225 (508)
T ss_pred HHHH
Confidence 9865
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.41 E-value=8.5e-07 Score=73.29 Aligned_cols=76 Identities=14% Similarity=0.342 Sum_probs=63.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
....-+||..+|.-+.+.++...|..+. |.+.+++ ++||||||+|++.+.|.-|-+.||++.|+ |+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~---e~ 120 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM---EH 120 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh---hh
Confidence 3456789999999999999999999883 4443332 34799999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 021857 119 VLHTEMAKKN 128 (306)
Q Consensus 119 ~i~V~~a~~~ 128 (306)
.|.|.+-.+.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999986554
No 134
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=1.1e-07 Score=78.99 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=63.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..+||||.|+-..++||.|.++|-+-|.|.+|+|...+. ..||||.|.++-+..-|++.|||-.+.+. .++|
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~-e~q~ 81 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED-EEQR 81 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc-hhhc
Confidence 478999999999999999999999999999999984332 27999999999999999999999999855 4666
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.40 E-value=4.2e-07 Score=84.43 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=56.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC--C--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE--R--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~--~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
...+|||+|||.++++++|.++|..||.|+..+|.... . ..||||+|++.+++..||++- =..|+ +.++.|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig-~~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG-GRKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC-CeeEEE
Confidence 35569999999999999999999999999988877533 2 289999999999999999874 22233 444555
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.40 E-value=1.2e-06 Score=62.07 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=46.2
Q ss_pred CEEEEcCCCCCCCHH----HHHHhhccCCC-ceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 224 NTLFIGNLGESINEE----ELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e----~L~~~F~~~G~-i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..|||.|||.+.+.. .|+.++...|+ |.+| . ++.|+|.|.+++.|.+|.+.|+|..+-|+ ++.| |..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVfG~-kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVFGN-KISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS---EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhcccccccc-eEEEEEcC
Confidence 469999999998875 45688888875 5444 3 26799999999999999999999999955 6888 774
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.38 E-value=1.9e-06 Score=61.07 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=48.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLP-GYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~-~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~~ 128 (306)
..|||.|||.+.+-..++.=+.... ..-|.++.|. .+.|.|.|.+.+.|++|+.-|+|..++ |+.|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--~~tAilrF~~~~~A~RA~KRmegEdVf---G~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--GGTAILRFPNQEFAERAQKRMEGEDVF---GNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SS---SS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--CCEEEEEeCCHHHHHHHHHhhcccccc---cceEEEEEcCCc
Confidence 3699999999988877666555432 2236777774 589999999999999999999999999 999999998433
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=1.5e-06 Score=83.29 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----------CCcCeEEEEeCCHHHHHHHHHHhcCceeCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----------GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~ 114 (306)
.+..++|||+||+.+++|+.|-..|..| |.|..++ ..+.+|||.|-+..+|++|+..|+|..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~- 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM- 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc----CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee-
Confidence 3457889999999999999999999999 8883332 23599999999999999999999999998
Q ss_pred CCCCeEEEEEccccch
Q 021857 115 ETKSVLHTEMAKKNLF 130 (306)
Q Consensus 115 ~~g~~i~V~~a~~~~~ 130 (306)
+..|++.|++.-..
T Consensus 246 --~~e~K~gWgk~V~i 259 (877)
T KOG0151|consen 246 --EYEMKLGWGKAVPI 259 (877)
T ss_pred --eeeeeecccccccc
Confidence 69999999965543
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.35 E-value=2.1e-06 Score=74.10 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=64.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe----e---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~----~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
...+|+|.||++.|+++||+++|..| |.+.++ . .+.|.|-|.|...++|..|++.+||..++ |+.|
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~----~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld---G~~m 154 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEF----GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD---GRPM 154 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHh----ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC---Ccee
Confidence 34789999999999999999999999 755333 1 22499999999999999999999998888 9999
Q ss_pred EEEEccccch
Q 021857 121 HTEMAKKNLF 130 (306)
Q Consensus 121 ~V~~a~~~~~ 130 (306)
.++.......
T Consensus 155 k~~~i~~~~~ 164 (243)
T KOG0533|consen 155 KIEIISSPSQ 164 (243)
T ss_pred eeEEecCccc
Confidence 9988755443
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=3.2e-06 Score=78.67 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=60.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEeeC--Cc--CeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNYKG--EK--PMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~~~--~k--g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.....+|||+|||.++|+++|+++|..| |.| +.++. .+ .||||+|.+.++++.|+++ +-..+. +
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~F----G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig---~ 356 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQF----GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIG---G 356 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhc----ccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccC---C
Confidence 3456679999999999999999999999 888 33332 33 8999999999999999984 344455 7
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.+.|+-.+...
T Consensus 357 ~kl~Veek~~~~ 368 (419)
T KOG0116|consen 357 RKLNVEEKRPGF 368 (419)
T ss_pred eeEEEEeccccc
Confidence 999998765443
No 141
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.2e-06 Score=77.83 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---e---C--CcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K---G--EKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~---~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
..+|...|||--|++-+|+|||.-+|+.| |.|+.+ + + +--||||+|.+.+++++|.=.|++..|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrF----G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID--- 307 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRF----GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID--- 307 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhc----ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec---
Confidence 34778899999999999999999999999 887443 2 1 1389999999999999999999999998
Q ss_pred CCeEEEEEccccch
Q 021857 117 KSVLHTEMAKKNLF 130 (306)
Q Consensus 117 g~~i~V~~a~~~~~ 130 (306)
.+.|.|.|+.+-+.
T Consensus 308 DrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 308 DRRIHVDFSQSVSK 321 (479)
T ss_pred cceEEeehhhhhhh
Confidence 69999999865544
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.27 E-value=2.1e-06 Score=76.03 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCce--------EEEEEecCCc---ceEEEEECCHHHHHHHHHHhCCceeCCCCc
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFK--------QMKVLRQERH---TVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~--------~vkl~~~~~~---g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~ 291 (306)
++.|||.|||.++|.+++.++|+.+|.|. .|||-++..+ |-|.+.|--.++...|++.|++..+. +..
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r-g~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR-GKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc-CcE
Confidence 66799999999999999999999999876 4788865543 89999999999999999999999999 557
Q ss_pred eeE-EeeC
Q 021857 292 VGM-RIQY 298 (306)
Q Consensus 292 ~~i-~~k~ 298 (306)
|+| -++.
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 998 5544
No 143
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.18 E-value=1.3e-06 Score=78.27 Aligned_cols=66 Identities=27% Similarity=0.415 Sum_probs=55.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHH----hCCceeC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHN----LQGAVIP 287 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~----lnG~~i~ 287 (306)
....|||++|.|++++|.|++.|++||+|.++.++.+.. .||+||+|++.+...++|.. +.|..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 357799999999999999999999999999999996432 49999999999999988865 4455444
No 144
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.16 E-value=5.3e-06 Score=62.81 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=40.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCc
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~ 284 (306)
.+|+|.+++..++.++|+++|+.||.|..|++.. +. ..|+|.|.+.++|.+|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~-~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GD-TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T--SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CC-CEEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999999985 33 58999999999999999877655
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.09 E-value=4.4e-06 Score=71.16 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=62.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEe-e--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~-~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
..+||+|.|.-++++|-|-..|.+|.++.+.- ++- + .++||+||.|.+.+++.+|+.+|+|.-+. .|+|++.-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg---srpiklRk 266 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG---SRPIKLRK 266 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc---cchhHhhh
Confidence 56899999999999999999999998776653 333 3 34699999999999999999999999887 48887654
Q ss_pred c
Q 021857 125 A 125 (306)
Q Consensus 125 a 125 (306)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 3
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.90 E-value=2.4e-05 Score=67.55 Aligned_cols=71 Identities=15% Similarity=0.363 Sum_probs=61.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
+.+.+||+|+...+|.+++...|+.+|.|..+.+..+.. +||+||+|.+.+.+..|+. |||-.|.+. .+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~-~i~v 174 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP-AIEV 174 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc-ccee
Confidence 568899999999999999999999999998777774332 4899999999999999999 999999954 5665
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.87 E-value=0.00015 Score=69.85 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=58.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCc----CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK----PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~k----g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
..-+.|-+.|+|+++|.|||.++|+.|.---+.|+.-.+.+ |-+.|-|++.++|.+|...|++++|. .|.+++
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~---nr~V~l 941 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIR---NRVVSL 941 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCccc---ceeEEE
Confidence 34447889999999999999999999943333443222222 88999999999999999999999998 478776
Q ss_pred E
Q 021857 123 E 123 (306)
Q Consensus 123 ~ 123 (306)
.
T Consensus 942 ~ 942 (944)
T KOG4307|consen 942 R 942 (944)
T ss_pred E
Confidence 5
No 148
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.86 E-value=0.00018 Score=69.27 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=106.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe-----eCCc-CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----KGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~-----~~~k-g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
.+.+=+++.++...+.|++++|-.. ...-+.+ ...+ |.++|.|....++++|+. -|...+- .|.+.|
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~---~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~---~R~~q~ 383 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR---NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDV---NRPFQT 383 (944)
T ss_pred hheeeecccccccccchhhhhcCcc---cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhh---hcceee
Confidence 3444567899999999999986543 2222222 2333 999999999999999987 3443332 377766
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
.-.......... +.. ......+.+... +.+. ..
T Consensus 384 ~P~g~~~~~~a~--------~~~------------~~~~~~~~~~~h----g~p~-----------------------~~ 416 (944)
T KOG4307|consen 384 GPPGNLGRNGAP--------PFQ------------AGVPPPVIQNNH----GRPI-----------------------AP 416 (944)
T ss_pred cCCCccccccCc--------ccc------------ccCCCCcccccC----CCCC-----------------------CC
Confidence 554322211100 000 000000000000 0000 00
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceE-EEEEe---cCCcceEEEEECCHHHHHHH
Q 021857 203 APVPAPSSYVPVQ-NTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLR---QERHTVCFIEFEDVNSASSV 277 (306)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~-vkl~~---~~~~g~aFV~F~~~~~A~~A 277 (306)
.+.... ..+ ...+..-...|||..||..+++.++.++|..--.|++ |.|.+ +...+.|||.|.+++++.+|
T Consensus 417 pr~~~~----~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a 492 (944)
T KOG4307|consen 417 PRAMVR----PGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTA 492 (944)
T ss_pred cccccC----CCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchh
Confidence 000000 000 0112234678999999999999999999987665655 55543 22348999999999999999
Q ss_pred HHHhCCceeCCCCceeE
Q 021857 278 HHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 278 i~~lnG~~i~~~~~~~i 294 (306)
..--+-+.++ ...++|
T Consensus 493 ~~~~~k~y~G-~r~irv 508 (944)
T KOG4307|consen 493 SSVKTKFYPG-HRIIRV 508 (944)
T ss_pred hhcccccccC-ceEEEe
Confidence 8766655555 324454
No 149
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.85 E-value=1.5e-05 Score=72.52 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=58.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC-----------------CcceEEEEECCHHHHHHHHHHhC
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----------------RHTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~-----------------~~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
+.+.+||.+.|||.+-.-|.|..||+.+|.|+.|+|...+ .+-+|+|+|++.+.|.+|.+.||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 3579999999999998889999999999999999998430 13689999999999999999987
Q ss_pred CceeC
Q 021857 283 GAVIP 287 (306)
Q Consensus 283 G~~i~ 287 (306)
.....
T Consensus 308 ~e~~w 312 (484)
T KOG1855|consen 308 PEQNW 312 (484)
T ss_pred hhhhh
Confidence 65443
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.79 E-value=2.8e-05 Score=67.17 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=64.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEe---e-CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNY---K-GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~---~-~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
.+...+.+||+|+.+.+|.+++...|+.+ |.+ +.. . ..|||+||+|.+.+.++.|+. |+|..+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~C----g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~--- 168 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESC----GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP--- 168 (231)
T ss_pred hccCCceEEEeccccccccchhhheeecc----CCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc---
Confidence 34568899999999999999999999988 555 222 1 347999999999999999999 9999998
Q ss_pred CCeEEEEEcccc
Q 021857 117 KSVLHTEMAKKN 128 (306)
Q Consensus 117 g~~i~V~~a~~~ 128 (306)
|+.|.|.+.+.+
T Consensus 169 ~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 169 GPAIEVTLKRTN 180 (231)
T ss_pred cccceeeeeeee
Confidence 899999887544
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.66 E-value=6.2e-05 Score=66.63 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=63.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHh--hcCCCcCcEEEe----eCC-----cCeE--EEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 50 RTIFITGLPDDVKERELQNLLR--WLPGYEASQVNY----KGE-----KPMG--FALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~--~~~~~~g~iv~~----~~~-----kg~a--FV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
.-+||-+|+..+-.|+...++. +|||.+|.|.+| ++. .+.+ ||+|.+.|+|.+|+...+|..++
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D--- 191 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD--- 191 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc---
Confidence 3479999999999998777776 468888999665 221 1444 99999999999999999999999
Q ss_pred CCeEEEEEccccc
Q 021857 117 KSVLHTEMAKKNL 129 (306)
Q Consensus 117 g~~i~V~~a~~~~ 129 (306)
||.|+..|+..+-
T Consensus 192 Gr~lkatYGTTKY 204 (480)
T COG5175 192 GRVLKATYGTTKY 204 (480)
T ss_pred CceEeeecCchHH
Confidence 9999999987663
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.59 E-value=0.00016 Score=54.66 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=37.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEeeCCcCeEEEEeCCHHHHHHHHHHhcCc
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEM 110 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~~~~kg~aFV~F~~~~~A~~Al~~l~g~ 110 (306)
+.|+|.++...++-++|+++|+.| |.| |.+...-..|+|.|.+.+.|+.|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999 888 666656678999999999999999977543
No 153
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.56 E-value=0.00031 Score=52.42 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEE------------EEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMK------------VLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vk------------l~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~ 290 (306)
.+.|.|.+.|.. ....|.+.|++||.|.+.. -.. ....+--|+|+++.+|.+||.. ||..|.|+-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~-~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIP-SGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E--CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCC-CCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 456889999987 6677889999999998764 121 2347999999999999999986 999999663
Q ss_pred ceeE-Eee
Q 021857 291 SVGM-RIQ 297 (306)
Q Consensus 291 ~~~i-~~k 297 (306)
-+-| |.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 3334 664
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.39 E-value=0.00034 Score=45.93 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=41.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHH
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai 278 (306)
+.|-|.+.+.... +++...|..||+|..+.+-. +..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 4577888887554 45556888999999988862 3368999999999999985
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.34 E-value=0.00031 Score=62.32 Aligned_cols=79 Identities=14% Similarity=0.311 Sum_probs=61.7
Q ss_pred CEEEEcCCCCCCCHHH----H--HHhhccCCCceEEEEEecCC-----cc-e-EEEEECCHHHHHHHHHHhCCceeCCCC
Q 021857 224 NTLFIGNLGESINEEE----L--RGLFSAQPGFKQMKVLRQER-----HT-V-CFIEFEDVNSASSVHHNLQGAVIPSSG 290 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~----L--~~~F~~~G~i~~vkl~~~~~-----~g-~-aFV~F~~~~~A~~Ai~~lnG~~i~~~~ 290 (306)
..+||-+|+..+-.|+ | .+.|.+||.|..|-+-.+-. .+ + -||+|.+.++|.+||.+.+|-.++|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr- 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR- 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc-
Confidence 4589999988766555 4 38899999998877753221 02 2 39999999999999999999999955
Q ss_pred ceeE-EeeCCcccc
Q 021857 291 SVGM-RIQYPFCCF 303 (306)
Q Consensus 291 ~~~i-~~k~~~~~~ 303 (306)
.++- |+-..||-+
T Consensus 194 ~lkatYGTTKYCts 207 (480)
T COG5175 194 VLKATYGTTKYCTS 207 (480)
T ss_pred eEeeecCchHHHHH
Confidence 6888 999988753
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.25 E-value=0.00047 Score=61.82 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=62.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceE--------EEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeC
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~--------vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~ 287 (306)
...+.+|||-+|+..+++++|.++|.+.|.|+. |+|-++. -++-|.|+|+|...|..||+-++|..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345788999999999999999999999998863 3333222 2489999999999999999999999999
Q ss_pred CCCceeE
Q 021857 288 SSGSVGM 294 (306)
Q Consensus 288 ~~~~~~i 294 (306)
+ +.++|
T Consensus 143 g-n~ikv 148 (351)
T KOG1995|consen 143 G-NTIKV 148 (351)
T ss_pred C-CCchh
Confidence 7 67888
No 157
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.23 E-value=0.00017 Score=61.67 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=59.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----------c------ceEEEEECCHHHHHHHHHHhCCcee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----------H------TVCFIEFEDVNSASSVHHNLQGAVI 286 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----------~------g~aFV~F~~~~~A~~Ai~~lnG~~i 286 (306)
.-+||++|||..++...|+++|+.||.|-+|-|.+... + .-|.|+|.+...|-+....|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46799999999999999999999999999988875321 0 3468999999999999999999999
Q ss_pred CCCCc
Q 021857 287 PSSGS 291 (306)
Q Consensus 287 ~~~~~ 291 (306)
+|++.
T Consensus 154 ggkk~ 158 (278)
T KOG3152|consen 154 GGKKK 158 (278)
T ss_pred CCCCC
Confidence 98753
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00078 Score=63.64 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCceEEEcCCCC--CCCHHHHHHHHhhcCCCcCcEEEe-------eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 48 EVRTIFITGLPD--DVKERELQNLLRWLPGYEASQVNY-------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 48 ~~~~LfV~nLp~--~~tee~L~~~f~~~~~~~g~iv~~-------~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
-...|+|-|+|- ....+-|+.++.+.++..|.|+++ .+.+||.|++|.+..+|+.|+..|||..|+. ..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk--nH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK--NH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc--cc
Confidence 456899999984 566777877777777777999776 2457999999999999999999999999975 57
Q ss_pred eEEEEE
Q 021857 119 VLHTEM 124 (306)
Q Consensus 119 ~i~V~~ 124 (306)
+..|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777764
No 159
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=3.2e-05 Score=76.00 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=63.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC--C--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE--R--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~--~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
-.++||+||+..+.+++|...|..+|.+..+++..+. + +|+|+|.|.+.+++.+||....+..+. .+++ -+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---K~~v~i~g 743 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---KISVAISG 743 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---hhhhheeC
Confidence 3568999999999999999999999998877665211 1 399999999999999999987777776 3666 778
Q ss_pred CCccc
Q 021857 298 YPFCC 302 (306)
Q Consensus 298 ~~~~~ 302 (306)
.||.|
T Consensus 744 ~pf~g 748 (881)
T KOG0128|consen 744 PPFQG 748 (881)
T ss_pred CCCCC
Confidence 88887
No 160
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.08 E-value=0.0013 Score=56.51 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=47.1
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHh
Q 021857 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNL 281 (306)
Q Consensus 226 LfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~l 281 (306)
|||.||...++.|.|.+-|..||.|...-+..+.+ .+-++|.|...-.|.+|....
T Consensus 34 l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 34 LYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred EEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 99999999999999999999999987643332322 278899999999999999877
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.02 E-value=0.00043 Score=61.86 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCCCCceEE-EcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCC
Q 021857 45 AHDEVRTIF-ITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAE 115 (306)
Q Consensus 45 ~~~~~~~Lf-V~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~ 115 (306)
...+..++| |+||++.+|+++|+..|..+ |.|..++ ..+|+|+|.|.+..++..++.. +...++
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~-- 252 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG-- 252 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCc----CcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc--
Confidence 345566777 99999999999999888777 8886664 2369999999999999999986 777777
Q ss_pred CCCeEEEEEccccch
Q 021857 116 TKSVLHTEMAKKNLF 130 (306)
Q Consensus 116 ~g~~i~V~~a~~~~~ 130 (306)
|+++.+++.+....
T Consensus 253 -~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 253 -GRPLRLEEDEPRPK 266 (285)
T ss_pred -CcccccccCCCCcc
Confidence 79999999866644
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0019 Score=61.16 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=56.3
Q ss_pred CCEEEEcCCCCCC--CH----HHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCcee
Q 021857 223 CNTLFIGNLGESI--NE----EELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (306)
Q Consensus 223 ~~tLfV~NLp~~~--t~----e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~ 293 (306)
..+|+|-|+|.-- -- --|..+|+++|.|+.+-+..+.. +||.|++|.+..+|..|++.|||+.|.-.+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 5779999999621 12 23468899999998877763332 399999999999999999999999999655554
Q ss_pred E
Q 021857 294 M 294 (306)
Q Consensus 294 i 294 (306)
+
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 4
No 163
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.98 E-value=0.002 Score=61.27 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE---eeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN---YKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~---~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
.....|||.||=.-.|+-.|+.++.+- |.+|. |..-|..|||.|.+.++|..-...|+|..|...+++.|.+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rt----gg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRT----GGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhc----cCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 457899999999999999999999977 33321 23446899999999999999999999999966668999999
Q ss_pred Ecccc
Q 021857 124 MAKKN 128 (306)
Q Consensus 124 ~a~~~ 128 (306)
|+...
T Consensus 518 f~~~d 522 (718)
T KOG2416|consen 518 FVRAD 522 (718)
T ss_pred ecchh
Confidence 98544
No 164
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.94 E-value=0.00018 Score=71.29 Aligned_cols=80 Identities=19% Similarity=0.326 Sum_probs=68.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCc---ceEEEEECCHHHHHHHHHHhCCceeCCCCce
Q 021857 216 NTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH---TVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (306)
Q Consensus 216 ~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~---g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~ 292 (306)
..+....++|||++||+..+++.+|+..|..+|.|.+|+|-+...+ .||||.|.+.+.+-+|...+.|..|..+ ..
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-~~ 443 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-TH 443 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC-cc
Confidence 3445567899999999999999999999999999999998754322 8999999999999999999999999854 56
Q ss_pred eE-Ee
Q 021857 293 GM-RI 296 (306)
Q Consensus 293 ~i-~~ 296 (306)
+| |+
T Consensus 444 r~glG 448 (975)
T KOG0112|consen 444 RIGLG 448 (975)
T ss_pred ccccc
Confidence 77 65
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.93 E-value=0.0041 Score=49.35 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=50.7
Q ss_pred CCCCCCEEEEcCCC----C--CCCH---HHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 219 DNPPCNTLFIGNLG----E--SINE---EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 219 ~~~~~~tLfV~NLp----~--~~t~---e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
.+|+..||.|+=+. . ..++ ++|.+.|..||++.-||++. +.-.|+|.+-++|.+|++ |+|.+|. +
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~-g 96 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVN-G 96 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEET-T
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEEC-C
Confidence 45667777776554 1 2332 37788999999999999984 347999999999999977 6999998 4
Q ss_pred CceeEEeeC
Q 021857 290 GSVGMRIQY 298 (306)
Q Consensus 290 ~~~~i~~k~ 298 (306)
..++|.-|+
T Consensus 97 ~~l~i~LKt 105 (146)
T PF08952_consen 97 RTLKIRLKT 105 (146)
T ss_dssp EEEEEEE--
T ss_pred EEEEEEeCC
Confidence 478884343
No 166
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.79 E-value=0.015 Score=52.20 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=56.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCc--EEEe-----e---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC-
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEAS--QVNY-----K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK- 117 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~--iv~~-----~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g- 117 (306)
.-.+||+||-|.+|++||.+.+... |. +..+ + .+||||+|...+.....+-|+.|--..|. |
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~----G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH---GQ 152 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQST----GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH---GQ 152 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhh----hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec---CC
Confidence 4468999999999999999998876 43 2333 2 35799999999999999999999888886 4
Q ss_pred CeEEEEEcccc
Q 021857 118 SVLHTEMAKKN 128 (306)
Q Consensus 118 ~~i~V~~a~~~ 128 (306)
.+....|-|..
T Consensus 153 ~P~V~~~NK~~ 163 (498)
T KOG4849|consen 153 SPTVLSYNKTN 163 (498)
T ss_pred CCeeeccchhh
Confidence 45555565443
No 167
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.76 E-value=0.0081 Score=42.81 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=43.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
..+++|. .|...-..||.++|+.||.| .|..+. . .-|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~-d--TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIN-D--TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEEC-T--TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEc-C--CcEEEEeecHHHHHHHHHHhc
Confidence 5677788 89999999999999999998 566663 3 469999999999999999885
No 168
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.66 E-value=0.0022 Score=57.66 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=64.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----------EEe----e--CCcCeEEEEeCCHHHHHHHHHHhcC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----------VNY----K--GEKPMGFALFSTAQLAVAAKDALQE 109 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----------v~~----~--~~kg~aFV~F~~~~~A~~Al~~l~g 109 (306)
...+-+|||-+|+..+++++|.+.|..+ +.| +.+ . ..||-|.|.|.|..+|+.|+.-+++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qc----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQC----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhc----ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 4568899999999999999999999988 666 111 1 2369999999999999999999999
Q ss_pred ceeCCCCCCeEEEEEccccc
Q 021857 110 MIFDAETKSVLHTEMAKKNL 129 (306)
Q Consensus 110 ~~~~~~~g~~i~V~~a~~~~ 129 (306)
..+. |.+|+|.++..+.
T Consensus 139 kdf~---gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 139 KDFC---GNTIKVSLAERRT 155 (351)
T ss_pred cccc---CCCchhhhhhhcc
Confidence 9998 7899888875443
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.64 E-value=0.0059 Score=40.04 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=40.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--CCcCeEEEEeCCHHHHHHHH
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAK 104 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--~~kg~aFV~F~~~~~A~~Al 104 (306)
+.|-|.+.+.+..++-|+ .|..| |.|+++. ....+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~f----GeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASF----GEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhc----CCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 567889998887765555 78889 9998775 34799999999999999986
No 170
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.63 E-value=0.0024 Score=58.49 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=53.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 225 tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.||++||.+.++..+|..+|.....-.+-.++- +.||+||+..+..-|.+|++.|+|..-.-++++.| ++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 489999999999999999997542111112221 23899999999999999999999976554667877 54
No 171
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0049 Score=57.90 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=47.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEee-CC---cCeEEEEeCCHHHHHHHHHH
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNYK-GE---KPMGFALFSTAQLAVAAKDA 106 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~~-~~---kg~aFV~F~~~~~A~~Al~~ 106 (306)
-++.+|||||+||.-+|-++|..+|+..+ |.| |++. .. ||-|-|.|++..+=-+||+.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~ly---GgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLF---GGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhc---CceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 35789999999999999999999999554 444 3332 22 59999999999999999984
No 172
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.59 E-value=0.01 Score=40.04 Aligned_cols=54 Identities=19% Similarity=0.405 Sum_probs=44.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccC---CCceEEEEEecCCcceEEEEECCHHHHHHHHHHh
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQ---PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~---G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~l 281 (306)
..|+|++++. ++.++++..|..| ....+|..+.+.+ |-|-|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 3599999966 8889999999988 1255888885444 899999999999999876
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.59 E-value=0.0029 Score=56.57 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=63.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCC--ceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPG--FKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~--i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
...+||+||-|.+|++||.+....-|- |.++|++.++ .+|||+|-..+..+..+-|+.|--++|+|.++.-. |
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 456999999999999999988887773 6777877432 35999999999999999999999999998877766 7
Q ss_pred eeC
Q 021857 296 IQY 298 (306)
Q Consensus 296 ~k~ 298 (306)
-|.
T Consensus 160 NK~ 162 (498)
T KOG4849|consen 160 NKT 162 (498)
T ss_pred chh
Confidence 653
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.56 E-value=0.0022 Score=58.16 Aligned_cols=72 Identities=14% Similarity=0.335 Sum_probs=58.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC-------cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE--
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-- 294 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~-------~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-- 294 (306)
.+|-|-||..+++.+++..||...|.|..++|+++-+ --.|||.|.|.+.+..| +.|.++.+-+. .+.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdr-aliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDR-ALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeee-eEEEEe
Confidence 3799999999999999999999999999999996332 16899999999999887 66777776633 3433
Q ss_pred Eee
Q 021857 295 RIQ 297 (306)
Q Consensus 295 ~~k 297 (306)
|+.
T Consensus 86 ~~~ 88 (479)
T KOG4676|consen 86 YGD 88 (479)
T ss_pred cCC
Confidence 653
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.51 E-value=0.016 Score=43.30 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---------------CCcCeEEEEeCCHHHHHHHHHHhcCcee
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---------------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---------------~~kg~aFV~F~~~~~A~~Al~~l~g~~~ 112 (306)
..+-|.|=+.|... .+.+.+.|++| |.|+... ....+-.|+|++..+|.+||. .||..+
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~ 78 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF 78 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE
Confidence 35678899999884 45677789999 9997763 345899999999999999999 899999
Q ss_pred CCCCCCeE-EEEEccc
Q 021857 113 DAETKSVL-HTEMAKK 127 (306)
Q Consensus 113 ~~~~g~~i-~V~~a~~ 127 (306)
. |..| -|.|+++
T Consensus 79 ~---g~~mvGV~~~~~ 91 (100)
T PF05172_consen 79 S---GSLMVGVKPCDP 91 (100)
T ss_dssp T---TCEEEEEEE-HH
T ss_pred c---CcEEEEEEEcHH
Confidence 7 5444 4677643
No 176
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.46 E-value=0.0025 Score=60.70 Aligned_cols=77 Identities=18% Similarity=0.385 Sum_probs=61.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCC-ceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCC--CCceeE-
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS--SGSVGM- 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~-i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~--~~~~~i- 294 (306)
....+.+|||.||=..+|.-+|+.+++.-|. |++. +| +.-+.-|||.|.+.++|..-+.+|||....- .++|.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3456889999999999999999999997665 5555 44 3334569999999999999999999987754 455666
Q ss_pred Eee
Q 021857 295 RIQ 297 (306)
Q Consensus 295 ~~k 297 (306)
|.+
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 865
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.30 E-value=0.0099 Score=52.07 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=55.8
Q ss_pred CCCEEEEcCC--CCCCCH---HHHHHhhccCCCceEEEEEecCC-----cceEEEEECCHHHHHHHHHHhCCceeCCCCc
Q 021857 222 PCNTLFIGNL--GESINE---EELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (306)
Q Consensus 222 ~~~tLfV~NL--p~~~t~---e~L~~~F~~~G~i~~vkl~~~~~-----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~ 291 (306)
++++|.++|+ +-.+++ +++++.+.+||.|..|-|+...+ .---||+|+..++|.+|+..|||+.++|. .
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr-~ 358 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR-V 358 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce-e
Confidence 4666888887 345554 57889999999999888774332 14579999999999999999999999965 3
Q ss_pred eeE
Q 021857 292 VGM 294 (306)
Q Consensus 292 ~~i 294 (306)
++-
T Consensus 359 v~A 361 (378)
T KOG1996|consen 359 VSA 361 (378)
T ss_pred eeh
Confidence 443
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.26 E-value=0.029 Score=37.89 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=43.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEeeCCcCeEEEEeCCHHHHHHHHHHh
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDAL 107 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~~~~kg~aFV~F~~~~~A~~Al~~l 107 (306)
.+|+|+++ .+++.+|++..|..|+...+.. |.+-.. ..+=|.|.|.+.|.+||..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 47999999 5689999999999996544433 555322 34679999999999999864
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.20 E-value=0.02 Score=45.44 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=50.9
Q ss_pred CCCceEEEcCCC-----CCCCHH----HHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLP-----DDVKER----ELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp-----~~~tee----~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
++..||.|+=+. ...-.+ +|...|..| |.++-+|--.+.=+|+|.+-++|-+|++ |+|.++. |
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~----GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~---g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY----GEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVN---G 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC----S-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEET---T
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC----CceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEEC---C
Confidence 567788887776 223333 555566666 8886555445788999999999999999 9999998 8
Q ss_pred CeEEEEEcc
Q 021857 118 SVLHTEMAK 126 (306)
Q Consensus 118 ~~i~V~~a~ 126 (306)
+.|+|....
T Consensus 97 ~~l~i~LKt 105 (146)
T PF08952_consen 97 RTLKIRLKT 105 (146)
T ss_dssp EEEEEEE--
T ss_pred EEEEEEeCC
Confidence 999998753
No 180
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.19 E-value=0.0022 Score=57.21 Aligned_cols=78 Identities=14% Similarity=0.261 Sum_probs=62.3
Q ss_pred CEEEEcCCCCCCCHH-HHH--HhhccCCCceEEEEEecCC-------cceEEEEECCHHHHHHHHHHhCCceeCCCCcee
Q 021857 224 NTLFIGNLGESINEE-ELR--GLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e-~L~--~~F~~~G~i~~vkl~~~~~-------~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~ 293 (306)
.-+||-+|+.+.-.+ .|. +.|.+||.|.+|.+..+.. ..-++|+|+..++|.+||...+|+.+.+.. ++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~-lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA-LK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh-hH
Confidence 347888888766544 443 7899999999988875431 244899999999999999999999999764 88
Q ss_pred E-EeeCCccc
Q 021857 294 M-RIQYPFCC 302 (306)
Q Consensus 294 i-~~k~~~~~ 302 (306)
. |+-++||=
T Consensus 157 a~~gttkycs 166 (327)
T KOG2068|consen 157 ASLGTTKYCS 166 (327)
T ss_pred HhhCCCcchh
Confidence 8 99999974
No 181
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.14 E-value=0.003 Score=62.50 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCC-CCceeE-EeeC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS-SGSVGM-RIQY 298 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~-~~~~~i-~~k~ 298 (306)
|-..+.++.|.+...+..-|..+|+.||.+.+.+..++-+ +|.|+|.+.++|..|+++|+|+++.- +.+.+| |+|.
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3345677888888899999999999999999999987664 79999999999999999999998853 457889 9874
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.13 E-value=0.06 Score=40.96 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=51.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC-CceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G-~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~ 288 (306)
..++.+...|.-++.++|..+.+.+- .|..+||+++.. +-.+.++|.+.++|..=...+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44555666667777778877666664 477899997654 3789999999999999999999999974
No 183
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.95 E-value=0.0076 Score=50.02 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---------eCC----cCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---------KGE----KPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---------~~~----kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
....+|.|++||+.+||+++.+.++.+. +..+.+ ... -..|+|.|.+.++...-.+.++|..|.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l---~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWL---PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS-----SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhc---ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4567999999999999999998776621 332111 111 177999999999999999999999884
Q ss_pred CCCC--CeEEEEEccc
Q 021857 114 AETK--SVLHTEMAKK 127 (306)
Q Consensus 114 ~~~g--~~i~V~~a~~ 127 (306)
...| ..-.|++|--
T Consensus 82 D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 82 DSKGNEYPAVVEFAPY 97 (176)
T ss_dssp -TTS-EEEEEEEE-SS
T ss_pred CCCCCCcceeEEEcch
Confidence 3334 3446777744
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.94 E-value=0.0036 Score=53.82 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=44.2
Q ss_pred HHHHHhhc-cCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 238 EELRGLFS-AQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 238 e~L~~~F~-~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
|+|...|+ +||+|+++++..+-. .|-.+|+|..+++|++|++.|||.-+.|. ++--
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~-pi~a 142 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR-PIHA 142 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCC-ccee
Confidence 45555555 899999998874322 28899999999999999999999999954 4433
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.93 E-value=0.0063 Score=52.37 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=40.2
Q ss_pred CcCcEEEe--e-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccc
Q 021857 76 YEASQVNY--K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (306)
Q Consensus 76 ~~g~iv~~--~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~ 127 (306)
++|.|..+ . ..+|-++|.|...++|++|++.|||..|. |++|..+++.-
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~---G~pi~ae~~pv 147 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN---GRPIHAELSPV 147 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc---CCcceeeecCc
Confidence 34887433 2 23599999999999999999999999998 89999998743
No 186
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.90 E-value=0.016 Score=56.19 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=54.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
++.-+|||+|+...+..+-++..+..+ |.|..++..+ |||.+|....-..+|+..|+-..++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~----g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKS----GFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhC----Ccchhhhhhh-hcccchhhHHHHHHHHHHhcccCCC
Confidence 467899999999999999999999999 9997776555 9999999999999999988877775
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.72 E-value=0.026 Score=44.39 Aligned_cols=65 Identities=18% Similarity=0.344 Sum_probs=50.8
Q ss_pred CCCCCCCEEEEcCCCCCCC-HHHHHH---hhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCce
Q 021857 218 KDNPPCNTLFIGNLGESIN-EEELRG---LFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAV 285 (306)
Q Consensus 218 ~~~~~~~tLfV~NLp~~~t-~e~L~~---~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~ 285 (306)
...+|-.||.|+=|..++. .|||++ -.+.||.|.+|-+.- + .-|.|.|.|..+|-+|+.+++...
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-r--qsavVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-R--QSAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-C--ceEEEEehhhHHHHHHHHhhcCCC
Confidence 3466788999988877653 345554 456899999999983 2 469999999999999999988743
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.62 E-value=0.026 Score=47.04 Aligned_cols=59 Identities=27% Similarity=0.231 Sum_probs=44.5
Q ss_pred CHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhC--CceeCCCCceeE-Eee
Q 021857 236 NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 236 t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ln--G~~i~~~~~~~i-~~k 297 (306)
..+.|+++|..|+.+..+.....-+ -..|.|.+.++|.+|...|+ +..+.|. .++| |+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~-~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK-RLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE-E-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC-ceEEEEcc
Confidence 4588999999999988888876454 58999999999999999999 9999954 6999 874
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.60 E-value=0.054 Score=38.70 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=43.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEeeCCcCeEEEEeCCHHHHHHHHHHhcC
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDALQE 109 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~~~~kg~aFV~F~~~~~A~~Al~~l~g 109 (306)
....||+ +|..+...||..+|+.| |.| |.+- +-..|||...+.+.|..++..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspf----G~I~VsWi-~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPF----GQIYVSWI-NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCC----CCEEEEEE-CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccC----CcEEEEEE-cCCcEEEEeecHHHHHHHHHHhcc
Confidence 4566777 99999999999999999 998 6664 346799999999999999998853
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.60 E-value=0.044 Score=45.51 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcc-CCCc---eEEEEEecCC------cceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSA-QPGF---KQMKVLRQER------HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~-~G~i---~~vkl~~~~~------~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
...|.|++||..+|++++.+.++. ++.- ..+.-..... ..-|+|.|.+.++...-+..++|+.+...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 567999999999999999998887 6664 3443221111 26799999999999999999999888654
No 191
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.40 E-value=0.011 Score=50.91 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=50.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe-----------e--CCc----CeEEEEeCCHHHHHHHHHHhcCce
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----------K--GEK----PMGFALFSTAQLAVAAKDALQEMI 111 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~-----------~--~~k----g~aFV~F~~~~~A~~Al~~l~g~~ 111 (306)
.-.||++|||+.+.-.-|+.+|+.| |.+|.|.-- + +++ .-|+|+|.+...|.+....|||..
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y-GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY-GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc-cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4579999999999999999999988 333333110 0 111 338999999999999999999999
Q ss_pred eC
Q 021857 112 FD 113 (306)
Q Consensus 112 ~~ 113 (306)
|.
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 96
No 192
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.37 E-value=0.041 Score=50.76 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=51.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---------------------CCcCeEEEEeCCHHHHHHHH
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---------------------GEKPMGFALFSTAQLAVAAK 104 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---------------------~~kg~aFV~F~~~~~A~~Al 104 (306)
+-+.|+|.+-|||.+-.-+-|.++|..+ |.|-.|+ ..+-+|||+|...+.|.+|.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~----G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTV----GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcc----cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3579999999999998889999999999 8883332 01467999999999999999
Q ss_pred HHhcCcee
Q 021857 105 DALQEMIF 112 (306)
Q Consensus 105 ~~l~g~~~ 112 (306)
+.|+...-
T Consensus 304 e~~~~e~~ 311 (484)
T KOG1855|consen 304 ELLNPEQN 311 (484)
T ss_pred Hhhchhhh
Confidence 98865543
No 193
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=94.06 E-value=0.38 Score=42.26 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=40.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE---EEeeCCcCeEEEEeCCHH
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ---VNYKGEKPMGFALFSTAQ 98 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i---v~~~~~kg~aFV~F~~~~ 98 (306)
..-||++||+.++...||+..+.+. +++ +.|++.+|-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~----~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKR----ECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhc----CCCceeEeeecCCcceeEecCCcc
Confidence 4459999999999999999999998 776 677888999999998753
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.85 E-value=0.2 Score=46.69 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=58.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC-CceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G-~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
+..|+|--+|..++..||..++..+- .|..+++++++. .-+..|+|.+.++|..-.+.+||..++.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 78899999999999999999998764 488999998553 37889999999999999999999998743
No 195
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.84 E-value=0.12 Score=50.23 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=58.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
+.++..++||+|+-..+..+-++.+....|.|.+.+... |||.+|..+..+.+|+..|+-..+++.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 345678999999999999999999999999998877763 899999999999999999998888754
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.78 E-value=0.11 Score=43.33 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=42.2
Q ss_pred CHHHHHHHHhhcCCCcCcEEEeeC--CcCeEEEEeCCHHHHHHHHHHhc--CceeCCCCCCeEEEEEcc
Q 021857 62 KERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAKDALQ--EMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 62 tee~L~~~f~~~~~~~g~iv~~~~--~kg~aFV~F~~~~~A~~Al~~l~--g~~~~~~~g~~i~V~~a~ 126 (306)
..+.|+++|..+ +.++.+.- +-+...|.|.+.+.|.+|...|+ +..+. |..++|.|+.
T Consensus 8 ~~~~l~~l~~~~----~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~---g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTY----DPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFN---GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-----SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEET---TEE-EEE---
T ss_pred hHHHHHHHHHhc----CCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccC---CCceEEEEcc
Confidence 347788888888 88766643 33778999999999999999999 88888 8999999983
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.77 E-value=0.3 Score=33.45 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 60 DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 60 ~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
.++-+|++.-|..| +-.-......|| ||.|.|.++|+++....+|..+.
T Consensus 11 ~~~v~d~K~~Lr~y----~~~~I~~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY----RWDRIRDDRTGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcC----CcceEEecCCEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 57889999999988 543222222365 89999999999999999998886
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.60 E-value=0.41 Score=37.82 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCCCceEEEcCCCCCC-CHHHHHHHHhhcCCCcCcEEEee-CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 45 AHDEVRTIFITGLPDDV-KERELQNLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~-tee~L~~~f~~~~~~~g~iv~~~-~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
.+++..||.|+=|...+ ..+||+.+..+. +..|.|..+. -.|-.|.|.|.|..+|-+|+.+++.. .. |.-+++
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~L-s~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~-~p---gtm~qC 156 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRL-SVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSR-AP---GTMFQC 156 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHH-HhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCC-CC---CceEEe
Confidence 46788899998887653 345666665532 3339997775 35788999999999999999988763 33 577777
Q ss_pred EEc
Q 021857 123 EMA 125 (306)
Q Consensus 123 ~~a 125 (306)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 774
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.19 E-value=0.048 Score=48.88 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=56.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCc-----------CeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK-----------PMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~k-----------g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..-+||-+|+..+-.+++-+-- .+|+++|.|.+|...+ .-++|+|...++|..|+...+|..++ |
T Consensus 77 knlvyvvgl~~~~ade~~l~~~-eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d---g 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERT-EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD---G 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCc-ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh---h
Confidence 3457899999877555443332 3567778886663211 34899999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.++..++..+.
T Consensus 153 ~~lka~~gttky 164 (327)
T KOG2068|consen 153 RALKASLGTTKY 164 (327)
T ss_pred hhhHHhhCCCcc
Confidence 888888776553
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.81 E-value=2.5 Score=32.13 Aligned_cols=77 Identities=9% Similarity=-0.059 Sum_probs=49.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeC---CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG---EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~---~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
...+-+-..|.-++-++|..+.+.+......+..++. +|=.+++.|.+.+.|..-...+||+.|.+--...++|-|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 3445556666777778888776666322222222232 3467999999999999999999999883211344555554
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.68 E-value=0.46 Score=42.13 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=48.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
.=|-|.+.+.. .-.-|..+|++||.|++...- .++.+-.|.|.++.+|++||.. ||..|++.
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeeccc
Confidence 34667777763 445677899999998764333 5558999999999999999987 89888844
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.54 E-value=0.66 Score=44.48 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=57.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcc--CCCceEEEEEecCCcceEEEEECCHHHHHHHHH-------HhCCceeCCCCce
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSA--QPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH-------NLQGAVIPSSGSV 292 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~--~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~-------~lnG~~i~~~~~~ 292 (306)
.-+.|.++-||+.+-.|+++-||.. .-.+.++.+--+.+ =||+|++..||+.|.+ .+.|+.|-. ||
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykylreevk~fqgKpImA--RI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYLREEVKTFQGKPIMA--RI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHHHHHHHhhcCcchhh--hh
Confidence 4577889999999999999999985 45677888875443 5999999999999975 456776662 23
Q ss_pred e-E---EeeCCcc
Q 021857 293 G-M---RIQYPFC 301 (306)
Q Consensus 293 ~-i---~~k~~~~ 301 (306)
| | |.||-|+
T Consensus 249 Kaintf~pkngyr 261 (684)
T KOG2591|consen 249 KAINTFFPKNGYR 261 (684)
T ss_pred hhhhcccCCCCCC
Confidence 2 3 7777664
No 203
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.32 E-value=0.57 Score=41.36 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=48.4
Q ss_pred CCceEEEcCCC--CCCC---HHHHHHHHhhcCCCcCcEEEe----eCC-----cCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 48 EVRTIFITGLP--DDVK---ERELQNLLRWLPGYEASQVNY----KGE-----KPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 48 ~~~~LfV~nLp--~~~t---ee~L~~~f~~~~~~~g~iv~~----~~~-----kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
+++.|..+|.= -.++ +++++.-+++| |.+.++ ..+ .-.-||+|+..++|.+|+-.|||.-|.
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKy----g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKY----GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhh----cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 34445555552 2333 34666667777 666332 111 256899999999999999999999998
Q ss_pred CCCCCeEEEEEc
Q 021857 114 AETKSVLHTEMA 125 (306)
Q Consensus 114 ~~~g~~i~V~~a 125 (306)
||.++..|-
T Consensus 356 ---Gr~v~A~Fy 364 (378)
T KOG1996|consen 356 ---GRVVSACFY 364 (378)
T ss_pred ---ceeeeheec
Confidence 888877664
No 204
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.24 E-value=0.25 Score=42.71 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=52.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEe--e-CCcCeEEEEeCCHHHHHHHHHHhcCcee-CCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNY--K-GEKPMGFALFSTAQLAVAAKDALQEMIF-DAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~--~-~~kg~aFV~F~~~~~A~~Al~~l~g~~~-~~~~g~~i 120 (306)
...|||.||+.-++.|.|...|+.| |.| +.+ + ...+-++|.|...-.|.+|+..++-.-| +.-++++.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~f----g~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~ 106 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRF----GPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPV 106 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhc----CccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCcc
Confidence 4789999999999999999999999 666 333 2 1237899999999999999997742222 22225555
Q ss_pred EEEE
Q 021857 121 HTEM 124 (306)
Q Consensus 121 ~V~~ 124 (306)
-|+-
T Consensus 107 ~VeP 110 (275)
T KOG0115|consen 107 GVEP 110 (275)
T ss_pred CCCh
Confidence 5543
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.96 E-value=0.16 Score=50.74 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=61.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCc--CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK--PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~k--g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~~ 128 (306)
+.++-|..-..|..-|..+|+.| |.+....+.| ..|.|+|.+.+.|..|++.|+|+++. ..|-+-+|.+++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~y----g~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs-~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDY----GSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVS-VTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhh----cchhhheecccccchhhhhHHHHHHHHhhhhhcCCccc-ccCCceeEEecccc
Confidence 34455556668888999999999 9987776655 78999999999999999999999883 23789999999766
Q ss_pred ch
Q 021857 129 LF 130 (306)
Q Consensus 129 ~~ 130 (306)
..
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 43
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.32 E-value=2.3 Score=29.70 Aligned_cols=56 Identities=18% Similarity=0.429 Sum_probs=35.2
Q ss_pred CCCCHHHHHHhhccCCCc-----eEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 233 ESINEEELRGLFSAQPGF-----KQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 233 ~~~t~e~L~~~F~~~G~i-----~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..++..+|..+++..++| -.|+|.. .|+||+-.. +.|..++..|++..+.|. +++|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~-~~a~~v~~~l~~~~~~gk-~v~v 71 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPE-EVAEKVLEALNGKKIKGK-KVRV 71 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-T-T-HHHHHHHHTT--SSS-----E
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECH-HHHHHHHHHhcCCCCCCe-eEEE
Confidence 468899999999877664 4678874 579998765 488999999999999955 5665
No 207
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.23 E-value=2.6 Score=40.81 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhccC---C-CceEEEEEec--------------C---------------------
Q 021857 220 NPPCNTLFIGNLGE-SINEEELRGLFSAQ---P-GFKQMKVLRQ--------------E--------------------- 259 (306)
Q Consensus 220 ~~~~~tLfV~NLp~-~~t~e~L~~~F~~~---G-~i~~vkl~~~--------------~--------------------- 259 (306)
....++|-|-||.| .+.-++|.-+|+.| | .|.+|+|.+. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 34578899999999 58999999999865 4 6999988631 1
Q ss_pred --------C--------cceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 260 --------R--------HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 260 --------~--------~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
+ ..||.|+|++.+.|........|.++..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 0 16899999999999999999999999865
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.63 E-value=3.3 Score=28.89 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHhhcCCCcCc-EEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 59 DDVKERELQNLLRWLPGYEAS-QVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 59 ~~~tee~L~~~f~~~~~~~g~-iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
..++.-+|..++....+..+. |=+|+-...|+||+-.. +.|..+++.|++..+. |+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~---gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIK---GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SS---S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCC---CeeEEEEEC
Confidence 457888999999988554443 32333335789999865 4789999999999998 899999864
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.87 E-value=5.1 Score=27.42 Aligned_cols=50 Identities=12% Similarity=0.311 Sum_probs=39.7
Q ss_pred CCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCC
Q 021857 234 SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (306)
Q Consensus 234 ~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~ 288 (306)
.++-++++..+..|+ ..+|+ .+.. | =||.|.|..+|+++....||..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDRT-G-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecCC-E-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 578899999999997 33444 3333 4 3999999999999999999998873
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=83.82 E-value=0.63 Score=43.73 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=55.9
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 222 PCNTLFIGNLGESI-NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 222 ~~~tLfV~NLp~~~-t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..+.|-+.-.+... |-++|...|.+||.|+.|.+-... --|.|+|.+..+|.+|- +.+|..|+|. .+|| |-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~-~s~~avlnnr-~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAY-ASHGAVLNNR-FIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchh-ccccceecCc-eeEEEEec
Confidence 45667776667654 558999999999999998887532 35999999999997774 4689999965 6888 544
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.66 E-value=13 Score=33.34 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=43.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCC--cCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE--KPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 52 LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~--kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
|=|-+++...+ ..|-.+|+++ |.||+.... -.+=.|.|.++.+|++||. -||..|+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~c----G~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRC----GEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred EEEeccCccch-hHHHHHHHhh----CeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 44556665544 4566789999 999886433 3899999999999999999 7898887
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=81.54 E-value=3.5 Score=29.99 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhc
Q 021857 223 CNTLFIGNLGESINEEELRGLFS 245 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~ 245 (306)
.++|.|.|||...++|+|++..+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 68899999999999999987653
No 213
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=79.48 E-value=4.2 Score=39.27 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=40.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhc-CCCcCcEEEee--CCcCeEEEEeCCHHHHHHHHHHhc
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWL-PGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQ 108 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~-~~~~g~iv~~~--~~kg~aFV~F~~~~~A~~Al~~l~ 108 (306)
.|-|.++.||..+-+|+++.+|..- | =..+.+. .+.+ =||+|++..+|+.|...|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~enc---Pk~iscefa~N~n-WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENC---PKVISCEFAHNDN-WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCC---CCceeeeeeecCc-eEEEeecchhHHHHHHHHH
Confidence 4557899999999999999999852 1 1223331 1222 4899999999999987664
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.42 E-value=9.5 Score=35.95 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=53.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeC---CcCeEEEEeCCHHHHHHHHHHhcCcee
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG---EKPMGFALFSTAQLAVAAKDALQEMIF 112 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~---~kg~aFV~F~~~~~A~~Al~~l~g~~~ 112 (306)
++.|.|=-+|-.+|-.||-.++..+......|..+|. ++=..+|.|++.++|..-.+.+||..|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 7899999999999999999999877555555544442 356799999999999999999999987
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.05 E-value=12 Score=36.40 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=63.7
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCCcCcEEEee-----------------CC---------------------
Q 021857 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYK-----------------GE--------------------- 86 (306)
Q Consensus 46 ~~~~~~LfV~nLp~-~~tee~L~~~f~~~~~~~g~iv~~~-----------------~~--------------------- 86 (306)
+.+.++|-|-||.| .+.-.||..+|+.|+-.-|.|+.|. +-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 46789999999998 5999999999999987777885552 00
Q ss_pred --------c---------CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 87 --------K---------PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 87 --------k---------g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
| =||.|+|.+.+.|....+.++|..|.+ .|..|.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs-S~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES-SANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc-ccceeeeeec
Confidence 1 369999999999999999999999953 2556666664
No 216
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=71.05 E-value=1.5 Score=31.87 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLP 74 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~ 74 (306)
-..|+|.|+|||..+.||+|++.++-+|
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~LeIhF 77 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLEIHF 77 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEEEEE
Confidence 4478999999999999999999887664
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.94 E-value=2.8 Score=36.84 Aligned_cols=65 Identities=15% Similarity=0.304 Sum_probs=46.3
Q ss_pred CCEEEEcCCCC------------CCCHHHHHHhhccCCCceEEEEEe--------cCC------cceE---------EEE
Q 021857 223 CNTLFIGNLGE------------SINEEELRGLFSAQPGFKQMKVLR--------QER------HTVC---------FIE 267 (306)
Q Consensus 223 ~~tLfV~NLp~------------~~t~e~L~~~F~~~G~i~~vkl~~--------~~~------~g~a---------FV~ 267 (306)
..|||+.+||- --+++.|+..|..||.|..|+|.- +++ +||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 35677777762 246788999999999999888751 011 2443 577
Q ss_pred ECCHHHHHHHHHHhCCceeC
Q 021857 268 FEDVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 268 F~~~~~A~~Ai~~lnG~~i~ 287 (306)
|.....-..||.+|-|..+-
T Consensus 229 fmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHhHHHHHHHHhcchHH
Confidence 77777778899999887663
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.20 E-value=3.5 Score=33.98 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=49.4
Q ss_pred CEEEEcCCCCCC--CH---HHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 224 NTLFIGNLGESI--NE---EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 224 ~tLfV~NLp~~~--t~---e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.++++-+++..+ +. .....+|-+|-+..-.++++.. +.--|.|.+.+.|..|...++++.+.+++.++. |+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 457888887643 22 2334666666655444555322 345789999999999999999999998866666 44
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.31 E-value=9.5 Score=30.23 Aligned_cols=56 Identities=5% Similarity=-0.063 Sum_probs=38.1
Q ss_pred ceEEEcCCC--CCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHH
Q 021857 50 RTIFITGLP--DDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 105 (306)
Q Consensus 50 ~~LfV~nLp--~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~ 105 (306)
+...|+.+. ...+.+.|...+...-+..+.+--..-..++..+.|.+.+++.++++
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~ 73 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK 73 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe
Confidence 345566553 34778888888887544444332222356999999999999988876
No 220
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=64.98 E-value=38 Score=22.51 Aligned_cols=50 Identities=8% Similarity=0.169 Sum_probs=32.7
Q ss_pred CHHHHHHhhccCC-CceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCcee
Q 021857 236 NEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI 286 (306)
Q Consensus 236 t~e~L~~~F~~~G-~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i 286 (306)
.=.++.++|...| +|.++-......+++--+.+++.+.|.+++.. +|+++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~v 64 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFAV 64 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCEE
Confidence 4467888888877 58888776544444545566666666666654 57765
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.69 E-value=11 Score=34.92 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=44.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCC-ceEEEEEecCCcceEEEEECCHHHHHHHHHH
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~-i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ 280 (306)
.++|=|+|+|...-.+||..+|+.|++ ==+|+++. .. .||--|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-dt--halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-DT--HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-cc--eeEEeecchHHHHHHhhc
Confidence 578999999999888999999999975 22566663 32 489999999999999875
No 222
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=64.57 E-value=1.7 Score=39.58 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=42.5
Q ss_pred CHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCc
Q 021857 236 NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (306)
Q Consensus 236 t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~ 284 (306)
+...+.++.++.|+|..-.+.+..+.|.+||-...+++++++++.|.++
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3567888888999988777777778899999999999999999999986
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.86 E-value=17 Score=33.78 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=45.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHH
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDA 106 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~ 106 (306)
=-+.|=|.++|.....+||..+|+.|.+ .|.-|+|- ..-.||-.|++...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 3567889999998888899999999832 24445553 356899999999999999973
No 224
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=63.74 E-value=16 Score=29.33 Aligned_cols=58 Identities=21% Similarity=0.115 Sum_probs=42.6
Q ss_pred eEEEcCCC-CCCCHHHHHHHHhhcCCCcCcEEEeeCC--cCeEEEEeCCHHHHHHHHHHhc
Q 021857 51 TIFITGLP-DDVKERELQNLLRWLPGYEASQVNYKGE--KPMGFALFSTAQLAVAAKDALQ 108 (306)
Q Consensus 51 ~LfV~nLp-~~~tee~L~~~f~~~~~~~g~iv~~~~~--kg~aFV~F~~~~~A~~Al~~l~ 108 (306)
-.|+|+|. +.-+-|+|+.++...+......+..++- -+.++|+|.-..+|..-|..|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccCceEEEEEechHHHHHHHHHHh
Confidence 36788986 4677788888888875544444554433 2889999999999988888774
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.02 E-value=11 Score=28.94 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=27.7
Q ss_pred CEEEEcCCCCC---------CCHHHHHHhhccCCCceEEEEEecCCc--ceEEEEECCHHHHHH
Q 021857 224 NTLFIGNLGES---------INEEELRGLFSAQPGFKQMKVLRQERH--TVCFIEFEDVNSASS 276 (306)
Q Consensus 224 ~tLfV~NLp~~---------~t~e~L~~~F~~~G~i~~vkl~~~~~~--g~aFV~F~~~~~A~~ 276 (306)
-++.|-|++.. .+-++|.+.|..|..++ |+..-...+ |++.|+|.+--..-+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHH
Confidence 35778888643 35589999999998875 454433432 999999998544443
No 226
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=58.49 E-value=7.3 Score=36.90 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=54.8
Q ss_pred CceEEEcCCCCC-CCHHHHHHHHhhcCCCcCcEEEeeC--CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 49 VRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 49 ~~~LfV~nLp~~-~tee~L~~~f~~~~~~~g~iv~~~~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
++.|-+.-.++. -|-++|-..|..| |.|..|.- ..-.|.|+|.+..+|-+|-. ..+..|. +|.|+|.|-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~f----G~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avln---nr~iKl~wh 443 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQF----GEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLN---NRFIKLFWH 443 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhc----CccccccccCchhhheeeeeccccccchhc-cccceec---CceeEEEEe
Confidence 455555555554 3567888999999 99977642 23679999999999977765 5788888 799999997
Q ss_pred cccc
Q 021857 126 KKNL 129 (306)
Q Consensus 126 ~~~~ 129 (306)
+...
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 6543
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.75 E-value=18 Score=32.26 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=57.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC-----------CcceEEEEECCHHHHHH----HHHHhCCc--e
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----------RHTVCFIEFEDVNSASS----VHHNLQGA--V 285 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~-----------~~g~aFV~F~~~~~A~~----Ai~~lnG~--~ 285 (306)
.|.|.+.|+..+++-..+...|-.||.|++|.++.+. ......+.|-+.+.... -++.|+-+ .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5779999999999999999999999999999999644 02678899999876543 33444433 3
Q ss_pred eCCCCceeE-EeeCCc
Q 021857 286 IPSSGSVGM-RIQYPF 300 (306)
Q Consensus 286 i~~~~~~~i-~~k~~~ 300 (306)
+. +..+++ |..-.|
T Consensus 95 L~-S~~L~lsFV~l~y 109 (309)
T PF10567_consen 95 LK-SESLTLSFVSLNY 109 (309)
T ss_pred cC-CcceeEEEEEEec
Confidence 44 556777 765443
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=50.70 E-value=1.2e+02 Score=27.04 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=36.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCc-eEEEEEecCCcceEEEEECCHH
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGF-KQMKVLRQERHTVCFIEFEDVN 272 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i-~~vkl~~~~~~g~aFV~F~~~~ 272 (306)
..-|+|+||+.++--.||+..+..-+.+ .++-+. +..|-||++|.|..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk--g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK--GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee--cCCcceeEecCCcc
Confidence 3459999999999999999888877653 344443 33367999998853
No 229
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.39 E-value=83 Score=20.93 Aligned_cols=51 Identities=6% Similarity=0.088 Sum_probs=31.1
Q ss_pred CHHHHHHhhccCC-CceEEEEEecCCcceE--EEEEC--CHHHHHHHHHHhCCceeC
Q 021857 236 NEEELRGLFSAQP-GFKQMKVLRQERHTVC--FIEFE--DVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 236 t~e~L~~~F~~~G-~i~~vkl~~~~~~g~a--FV~F~--~~~~A~~Ai~~lnG~~i~ 287 (306)
.-.++.++|..+| +|.++........+.+ +|.++ +.+++.+++.. +|+.+.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v~ 69 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR-AGYEVL 69 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH-CCCeee
Confidence 4467788898887 5777765543223444 45554 55556666655 577665
No 230
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=46.27 E-value=71 Score=22.09 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=32.9
Q ss_pred HHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhC
Q 021857 238 EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 238 e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
+++++....+| +...++.--+.+++.|+-+++.+.++++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677778888 666777643335889999989999998887763
No 231
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=45.33 E-value=33 Score=31.76 Aligned_cols=71 Identities=11% Similarity=0.224 Sum_probs=51.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCC-ceEEEEEec------CCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQ------ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~-i~~vkl~~~------~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..|.|.+||...++++|.+-...|-. +.+..+... ...+.|+|.|.+.++...=...++|+.+.....+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kggti 85 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKGGTI 85 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCCCCc
Confidence 45789999999999999887777643 444444311 012889999999999888889999998865543343
No 232
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=44.68 E-value=62 Score=23.26 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=39.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-CCc--CeEEEEeCCHHHHHHHHHHh
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-GEK--PMGFALFSTAQLAVAAKDAL 107 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-~~k--g~aFV~F~~~~~A~~Al~~l 107 (306)
+-|+=..+.+++..++++.++.+|+....-|+.- ..+ -=|||.+..-.+|......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 5666677889999999999999876433333321 122 34999999988887765433
No 233
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=44.13 E-value=92 Score=22.57 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=35.1
Q ss_pred HHHHHhhccCCC-ceEEEEEecCCcceEEEEECCHHHHHHHHHHhCC
Q 021857 238 EELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (306)
Q Consensus 238 e~L~~~F~~~G~-i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG 283 (306)
+.++.+++..|. ++++.+....-.....+++.|.+.|.++...+..
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 567888888874 8888888644347888899999999887765543
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.91 E-value=83 Score=22.61 Aligned_cols=55 Identities=4% Similarity=0.116 Sum_probs=40.1
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-CceEEEEEecCCc-ceEEEEECCHHHHHHHHHH
Q 021857 226 LFIGNLGESINEEELRGLFSA-QP-GFKQMKVLRQERH-TVCFIEFEDVNSASSVHHN 280 (306)
Q Consensus 226 LfV~NLp~~~t~e~L~~~F~~-~G-~i~~vkl~~~~~~-g~aFV~F~~~~~A~~Ai~~ 280 (306)
-|+...+.+.+..+++..++. || .|.+|+.+....+ .-|||++...+.|...-..
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 566667888999999988876 66 3677776643332 5699999998888776444
No 235
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.44 E-value=89 Score=20.14 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHhhccCC-CceEEEEEecC--CcceEEEEECCHHHHHHHHHHhCCcee
Q 021857 238 EELRGLFSAQP-GFKQMKVLRQE--RHTVCFIEFEDVNSASSVHHNLQGAVI 286 (306)
Q Consensus 238 e~L~~~F~~~G-~i~~vkl~~~~--~~g~aFV~F~~~~~A~~Ai~~lnG~~i 286 (306)
.+|.+++..+| +|.++...... +...-.+..++.+.+.++++. +|+.+
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~~v 64 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGVEL 64 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCceE
Confidence 56777788776 57777665433 223344556676666666655 56654
No 236
>PRK15464 cold shock-like protein CspH; Provisional
Probab=43.34 E-value=21 Score=24.68 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=15.5
Q ss_pred cCcEEEeeCCcCeEEEEeCC
Q 021857 77 EASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 77 ~g~iv~~~~~kg~aFV~F~~ 96 (306)
.|.|.-+...||||||+=.+
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSD 25 (70)
T ss_pred eEEEEEEECCCCeEEEccCC
Confidence 37777778889999998543
No 237
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=41.82 E-value=1.1e+02 Score=20.97 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCcC-cEEEeeCC--cCeEEEEeCCHHHHHHHHHHhc
Q 021857 64 RELQNLLRWLPGYEA-SQVNYKGE--KPMGFALFSTAQLAVAAKDALQ 108 (306)
Q Consensus 64 e~L~~~f~~~~~~~g-~iv~~~~~--kg~aFV~F~~~~~A~~Al~~l~ 108 (306)
+++++.+..+ | .-..+.+. -++.|+.+.+.+.++++.+.|.
T Consensus 37 ~~~~~~~~~~----Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEEN----GALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHT----TESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHC----CCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4566666677 7 33666666 7999999999999998888763
No 238
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.35 E-value=31 Score=31.25 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=26.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccccch
Q 021857 90 GFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 90 aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~~~~ 130 (306)
|||+|++..+|..|.+.+...+- +.++++.|.+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCCCccc
Confidence 79999999999999996554332 4557777754443
No 239
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.23 E-value=1e+02 Score=21.72 Aligned_cols=54 Identities=6% Similarity=0.129 Sum_probs=38.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-CceEEEEEecCCc-ceEEEEECCHHHHHHHHH
Q 021857 226 LFIGNLGESINEEELRGLFSA-QP-GFKQMKVLRQERH-TVCFIEFEDVNSASSVHH 279 (306)
Q Consensus 226 LfV~NLp~~~t~e~L~~~F~~-~G-~i~~vkl~~~~~~-g~aFV~F~~~~~A~~Ai~ 279 (306)
-|+...+.+.+..+++..++. || .|.+|+.+.-..+ .-|||++..-+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 677778889999999988876 55 3666666532222 569999988888776543
No 240
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=40.66 E-value=26 Score=24.04 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=14.7
Q ss_pred cCcEEEeeCCcCeEEEEeC
Q 021857 77 EASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 77 ~g~iv~~~~~kg~aFV~F~ 95 (306)
.|.|..+...||||||+=.
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~ 23 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPE 23 (69)
T ss_pred ceEEEEEeCCCCcEEEecC
Confidence 3677777778999999854
No 241
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.00 E-value=35 Score=31.61 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=49.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe----------eCC-cCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----------KGE-KPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~----------~~~-kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
.-..|.|++||..+|+++|.+-+..+. .-+.+ +.. .+.++|.|...++...-..-.+|+.|..+-
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~----~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFP----EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCc----cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 356899999999999999988888762 22222 111 388999999999988888888888874333
Q ss_pred C
Q 021857 117 K 117 (306)
Q Consensus 117 g 117 (306)
|
T Consensus 82 g 82 (376)
T KOG1295|consen 82 G 82 (376)
T ss_pred C
Confidence 4
No 242
>PRK10943 cold shock-like protein CspC; Provisional
Probab=39.91 E-value=27 Score=23.93 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=15.1
Q ss_pred cCcEEEeeCCcCeEEEEeCC
Q 021857 77 EASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 77 ~g~iv~~~~~kg~aFV~F~~ 96 (306)
.|.|..+...||||||+=.+
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPAD 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 36777777889999998543
No 243
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=39.83 E-value=97 Score=19.55 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=29.6
Q ss_pred HHHHHHhhccCC-CceEEEEEecC-CcceEEEEECCHHHHHHHH
Q 021857 237 EEELRGLFSAQP-GFKQMKVLRQE-RHTVCFIEFEDVNSASSVH 278 (306)
Q Consensus 237 ~e~L~~~F~~~G-~i~~vkl~~~~-~~g~aFV~F~~~~~A~~Ai 278 (306)
-.++.+++...| +|.++.+.... ..+...+.+++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 356667787776 58888877544 3467777888888777765
No 244
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=39.58 E-value=18 Score=21.46 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=10.2
Q ss_pred CCCCHHHHHHhhccCC
Q 021857 233 ESINEEELRGLFSAQP 248 (306)
Q Consensus 233 ~~~t~e~L~~~F~~~G 248 (306)
.++++++|+++|.+-+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3689999999998754
No 245
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=39.23 E-value=85 Score=22.14 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=38.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHH
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKD 105 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~ 105 (306)
+-|+=..+..++..++++.++.+|+....-|+.. ...-=|||.+..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 5677778999999999999999876433323321 122349999988777776443
No 246
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=39.16 E-value=29 Score=24.27 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=13.9
Q ss_pred CcEEEeeCCcCeEEEEeC
Q 021857 78 ASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~ 95 (306)
|.|.-+...||||||+=.
T Consensus 4 G~Vkwfn~~KGfGFI~~~ 21 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPE 21 (74)
T ss_pred eEEEEEeCCCCeEEEeeC
Confidence 666667778999999753
No 247
>PRK14998 cold shock-like protein CspD; Provisional
Probab=38.48 E-value=30 Score=24.09 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.6
Q ss_pred CcEEEeeCCcCeEEEEeCC
Q 021857 78 ASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~~ 96 (306)
|.|.-+...||||||.=.+
T Consensus 4 G~Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 4 GTVKWFNNAKGFGFICPEG 22 (73)
T ss_pred eEEEEEeCCCceEEEecCC
Confidence 6677777889999997543
No 248
>PRK15463 cold shock-like protein CspF; Provisional
Probab=37.20 E-value=30 Score=23.82 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=14.8
Q ss_pred CcEEEeeCCcCeEEEEeCC
Q 021857 78 ASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~~ 96 (306)
|.|..+...||||||+=.+
T Consensus 7 G~Vk~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 7 GIVKTFDGKSGKGLITPSD 25 (70)
T ss_pred EEEEEEeCCCceEEEecCC
Confidence 7777777889999998543
No 249
>PHA01632 hypothetical protein
Probab=36.78 E-value=35 Score=22.30 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.3
Q ss_pred EEcCCCCCCCHHHHHHHHhhc
Q 021857 53 FITGLPDDVKERELQNLLRWL 73 (306)
Q Consensus 53 fV~nLp~~~tee~L~~~f~~~ 73 (306)
.|-.+|..-||++|+.++.+.
T Consensus 20 lieqvp~kpteeelrkvlpki 40 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPKI 40 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHHH
Confidence 467899999999999999876
No 250
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=36.43 E-value=43 Score=22.33 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred CcEEEeeCCcCeEEEEeCC
Q 021857 78 ASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~~ 96 (306)
|.|..+...+|||||.-.+
T Consensus 3 G~V~~~~~~kgyGFI~~~~ 21 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDD 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCceEEEEcc
Confidence 6677777789999999864
No 251
>PF14893 PNMA: PNMA
Probab=34.14 E-value=39 Score=31.03 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=35.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe-----e-CCcCeEEEEeCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K-GEKPMGFALFST 96 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~-----~-~~kg~aFV~F~~ 96 (306)
-+.-|.|.|.+||.+++++++.+.+..-....|.--.. + .+.--++|+|..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 35678999999999999999999998754333433111 1 123668888864
No 252
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=33.72 E-value=37 Score=23.33 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=14.4
Q ss_pred CcEEEeeCCcCeEEEEeC
Q 021857 78 ASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~ 95 (306)
|.|..+...||||||.=.
T Consensus 7 G~Vk~f~~~kGfGFI~~~ 24 (70)
T PRK10354 7 GIVKWFNADKGFGFITPD 24 (70)
T ss_pred EEEEEEeCCCCcEEEecC
Confidence 777777778999999843
No 253
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.34 E-value=5.1 Score=38.69 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
..++||++|+.+.++-++|..+++.+.++.=.- +-.+....+++|+|+---.-..|...||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 357899999999999999999999884321111 111233477889998655555566666776664
No 254
>PRK09890 cold shock protein CspG; Provisional
Probab=32.47 E-value=40 Score=23.19 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=14.5
Q ss_pred CcEEEeeCCcCeEEEEeC
Q 021857 78 ASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~ 95 (306)
|.|..+...||||||+=.
T Consensus 7 G~Vk~f~~~kGfGFI~~~ 24 (70)
T PRK09890 7 GLVKWFNADKGFGFITPD 24 (70)
T ss_pred EEEEEEECCCCcEEEecC
Confidence 777777778999999854
No 255
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=32.41 E-value=1.8e+02 Score=20.38 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=41.1
Q ss_pred EEEcCCCCCCCHHHHHHhhc-------cCCCceEEEEEec--CCcceEEEEECCHHHHHHHHHHhCCceeC
Q 021857 226 LFIGNLGESINEEELRGLFS-------AQPGFKQMKVLRQ--ERHTVCFIEFEDVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 226 LfV~NLp~~~t~e~L~~~F~-------~~G~i~~vkl~~~--~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~ 287 (306)
|-.++||..+|.++|..... .+.+|..++-.-. .++-||+.+=.|.+...++-+. .|....
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~d 72 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLPAD 72 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCCcc
Confidence 55689999899999876655 4445666654433 4457777777777777776555 477665
No 256
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=31.34 E-value=45 Score=22.72 Aligned_cols=19 Identities=16% Similarity=0.143 Sum_probs=14.5
Q ss_pred CcEEEeeCCcCeEEEEeCC
Q 021857 78 ASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~~ 96 (306)
|.|.-+...||||||.=.+
T Consensus 4 G~Vk~f~~~kGfGFI~~~~ 22 (68)
T TIGR02381 4 GIVKWFNNAKGFGFICPEG 22 (68)
T ss_pred eEEEEEeCCCCeEEEecCC
Confidence 6666667789999998654
No 257
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=30.63 E-value=53 Score=21.80 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.6
Q ss_pred CcEEEeeCCcCeEEEEeCC
Q 021857 78 ASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~~ 96 (306)
|.|..+...||||||.=.+
T Consensus 3 G~Vk~~~~~kGfGFI~~~~ 21 (65)
T cd04458 3 GTVKWFDDEKGFGFITPDD 21 (65)
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 6666667779999998655
No 258
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=30.36 E-value=94 Score=22.51 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe-e--CCcCeEEEEeCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GEKPMGFALFST 96 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~-~--~~kg~aFV~F~~ 96 (306)
...-|||++++..+-|. |.+....++...|.++.+ . +..||.|-++.+
T Consensus 24 v~~GVyVg~~s~rVRe~-lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRER-IWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHH-HHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 34569999998877654 444444443344666554 2 346888887754
No 259
>PF14893 PNMA: PNMA
Probab=29.94 E-value=31 Score=31.63 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=39.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhc----cCCCceEE-EEE-ecCCcceEEEEECCHHHHHHHHHHhCCceeCC-CCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFS----AQPGFKQM-KVL-RQERHTVCFIEFEDVNSASSVHHNLQGAVIPS-SGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~----~~G~i~~v-kl~-~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~-~~~~~i 294 (306)
-+.|.|.+||.+++++++.+..+ ..|...-+ +++ ++.+-..|+|+|...-+-.. ==.+|.| ++.++|
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~-----iP~~i~g~gg~W~V 91 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSL-----IPREIPGKGGPWRV 91 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhh-----CchhcCCCCCceEE
Confidence 57799999999999999887765 44543221 222 22233678888876433221 1234444 456676
No 260
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=29.06 E-value=1e+02 Score=25.67 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=46.3
Q ss_pred ceEEEcCCCCCC-CHHHHHHHHhhcCCCcCcEEEee--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC-eEEEEEc
Q 021857 50 RTIFITGLPDDV-KERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS-VLHTEMA 125 (306)
Q Consensus 50 ~~LfV~nLp~~~-tee~L~~~f~~~~~~~g~iv~~~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~-~i~V~~a 125 (306)
.++.+.++...+ ++.+.+..|+..|-.+-..+-.+ .+.+.-.|.|.+.+.|..|.-.+++..|. |+ .+..-++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~---~~~~~k~yfa 87 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFN---GKNELKLYFA 87 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccC---CCceEEEEEc
Confidence 457778887543 33344444444422112222221 23466778999999999999999999997 55 6666666
No 261
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=28.71 E-value=1.1e+02 Score=20.70 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=11.1
Q ss_pred HHHHHHHhhcCCCcCcE
Q 021857 64 RELQNLLRWLPGYEASQ 80 (306)
Q Consensus 64 e~L~~~f~~~~~~~g~i 80 (306)
.+||+.|+.+ |.|
T Consensus 9 ~~iR~~fs~l----G~I 21 (62)
T PF15513_consen 9 AEIRQFFSQL----GEI 21 (62)
T ss_pred HHHHHHHHhc----CcE
Confidence 5788888888 998
No 262
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=28.08 E-value=1.3e+02 Score=21.74 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---eCCcCeEEEEeC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFS 95 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~~~kg~aFV~F~ 95 (306)
...-|||+|++..+-|.-...+.+.. ..|..+.+ .+..||+|-...
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~--~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWI--GDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhC--CCccEEEEEccCCCCCEEEEEeC
Confidence 34569999999888775544444432 23555444 244699988873
No 263
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=28.04 E-value=25 Score=24.03 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhc
Q 021857 64 RELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (306)
Q Consensus 64 e~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~ 108 (306)
++|++.|..+ ...+.+|+.+ +|..|.|.++|-.++..+.
T Consensus 27 ~~v~~~~~~~-~~f~k~vkL~-----aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDP-EKFSKIVKLK-----AFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCH-HHHhhhhhhh-----hccCCCCHHHHHHHHHHhh
Confidence 5777777654 1114455544 8999999999988877653
No 264
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=27.95 E-value=13 Score=35.93 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=51.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC--C--cceEEEEECCHHHHHHHHHHhCCceeC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE--R--HTVCFIEFEDVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~--~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~ 287 (306)
.++||++|++.+++-++|..+|..+-.+..+-+-... + ..++.|+|.--..-..|+.+|||.-+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4679999999999999999999998777666554211 1 256889999887788888888887665
No 265
>PRK10672 rare lipoprotein A; Provisional
Probab=27.63 E-value=3.2e+02 Score=25.46 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=43.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEE---EeCCHHHHHHHHHHhcCcee
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFA---LFSTAQLAVAAKDALQEMIF 112 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV---~F~~~~~A~~Al~~l~g~~~ 112 (306)
.....|-|+-+.....-+.|++-++..++..+.|.. ..++=-| -|.+.++|+++++.|...-+
T Consensus 287 ~g~y~VQVGAFsn~a~Ae~L~akL~~~~gvpa~V~~---~g~lYRVrLGPF~sr~eA~kl~~rLk~~g~ 352 (361)
T PRK10672 287 SGNFVVQVGAVSDQQRAQQWQQSLSQRFGVPGRVTQ---NGAVYRVQLGPFASRQQASALQQRLQTEAQ 352 (361)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHhCCCeEEee---CCCEEEEEeCCCCCHHHHHHHHHHHHhccC
Confidence 456789999999999999999999864443333321 1122122 48899999999998875444
No 266
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=27.38 E-value=60 Score=34.80 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=19.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhc
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWL 73 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~ 73 (306)
.++++|--+-..+-.+.|+++.+.+
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~ 96 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPC 96 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCcc
Confidence 4567777777788888888888877
No 267
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=25.47 E-value=80 Score=26.20 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccC-CCceEEEEEecCC-----cceEEEEECCHHHHHHHHHH
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQ-PGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHN 280 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~-G~i~~vkl~~~~~-----~g~aFV~F~~~~~A~~Ai~~ 280 (306)
.+++|.. .|++.|.++-.-- |.+..|.+..+.. +|--||+|.+.++|...++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4667777 4555544333311 6787877765433 38889999999999987664
No 268
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=24.48 E-value=2e+02 Score=18.37 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=26.6
Q ss_pred EEEcCCCCCCCHHHHHHhhccCC-CceEEEEEecCCcceEEE--EECC
Q 021857 226 LFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFI--EFED 270 (306)
Q Consensus 226 LfV~NLp~~~t~e~L~~~F~~~G-~i~~vkl~~~~~~g~aFV--~F~~ 270 (306)
|+|..-...-.-.+|.++|+.+| +|.++........+++.+ ++++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 34433333445678889998887 588888775431244444 4444
No 269
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.06 E-value=2.1e+02 Score=18.39 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=25.6
Q ss_pred CHHHHHHhhccCC-CceEEEEEecCCcceEE--EEECCHHHHHHHHHHhC
Q 021857 236 NEEELRGLFSAQP-GFKQMKVLRQERHTVCF--IEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 236 t~e~L~~~F~~~G-~i~~vkl~~~~~~g~aF--V~F~~~~~A~~Ai~~ln 282 (306)
.-.+|..+|..+| .|.++........+.+. |..++. ....+++.|.
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~l~ 60 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-IDEEVIEEIK 60 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-CCHHHHHHHH
Confidence 4567888888886 57777765422234444 444443 3334444433
No 270
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.56 E-value=1.5e+02 Score=22.03 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=29.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---eCCcCeEEEEeCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFST 96 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~~~kg~aFV~F~~ 96 (306)
...-|||++++..+-|. |.+....+.+. |..+.+ .+..||+|-++.+
T Consensus 26 v~~GVyVg~~S~rVRd~-lW~~v~~~~~~-G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREM-IWQQVTQLAEE-GNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHH-HHHHHHHhCCC-CcEEEEEcCCCCCCcEEEecCC
Confidence 34569999998777654 44445444332 555444 2346999888754
No 271
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=23.02 E-value=1.6e+02 Score=27.18 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=21.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhcc-CCCceEEEEEe
Q 021857 225 TLFIGNLGESINEEELRGLFSA-QPGFKQMKVLR 257 (306)
Q Consensus 225 tLfV~NLp~~~t~e~L~~~F~~-~G~i~~vkl~~ 257 (306)
|+++. |...++.++|+.+|.. |.+-.-|+|+.
T Consensus 248 Ti~~~-l~~~~t~~~i~~~y~~~Y~~epfVrv~~ 280 (349)
T COG0002 248 TIYLK-LKDLVTLEELHAAYEEFYAGEPFVRVVP 280 (349)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHhCCCCeEEEec
Confidence 34443 4455999999999976 56655667664
No 272
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=22.80 E-value=98 Score=25.69 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=34.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e-------CCcCeEEEEeCCHHHHHHHHHH
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K-------GEKPMGFALFSTAQLAVAAKDA 106 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~-------~~kg~aFV~F~~~~~A~~Al~~ 106 (306)
...|++|.. .|++.|..+.... + |...++ + +.+|--||+|.+.++|...++.
T Consensus 109 ~~~r~v~~K-----~td~ql~~l~qw~-~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK-----ITDDQLDDLNQWA-S--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc-----CCHHHHHHHHHHh-c--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 346788887 5555555555433 2 344333 2 2359999999999999987774
No 273
>PF08576 DUF1764: Eukaryotic protein of unknown function (DUF1764); InterPro: IPR013885 This entry consists of eukaryotic proteins of unknown function, including many hypothetical proteins.
Probab=21.80 E-value=38 Score=25.21 Aligned_cols=9 Identities=56% Similarity=1.453 Sum_probs=6.1
Q ss_pred eCCcccccC
Q 021857 297 QYPFCCFCC 305 (306)
Q Consensus 297 k~~~~~~~~ 305 (306)
.=||-|-||
T Consensus 93 ~CPFDC~CC 101 (102)
T PF08576_consen 93 LCPFDCDCC 101 (102)
T ss_pred CCCCcCCCC
Confidence 347777777
No 274
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=21.73 E-value=63 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=28.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKV 255 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl 255 (306)
...+||+-|+|..+|++.|..+.++.|.+..+-+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 4678999999999999999999999886554443
No 275
>PRK12450 foldase protein PrsA; Reviewed
Probab=20.86 E-value=1.9e+02 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhc--Ccee
Q 021857 60 DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ--EMIF 112 (306)
Q Consensus 60 ~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~--g~~~ 112 (306)
.+|++|++.+|..+ ...+.+ ..|.+.+.+.|+.+++.|. |..|
T Consensus 132 ~Vtd~evk~~y~~~----~~~~~~------~~I~~~~~~~A~~i~~~l~~~G~dF 176 (309)
T PRK12450 132 TISKKDYRQAYDAY----TPTMTA------EIMQFEKEEDAKAALEAVKAEGADF 176 (309)
T ss_pred CCCHHHHHHHHHHh----Ccccee------EEEEeCCHHHHHHHHHHHHhcCCCH
Confidence 48999999999987 222222 2478899999999999885 5554
No 276
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.20 E-value=2.4e+02 Score=17.72 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=31.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHH
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQL 99 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~ 99 (306)
.++||.+.....+.++|.+++..+ |-.+.-.-....-+|.+.+.+.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~----Gg~v~~~~~~~~thvI~~~~~~ 47 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKL----GGKVTSSVSKKTTHVIVGSDAG 47 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHc----CCEEeccccCCceEEEECCCCC
Confidence 578888887789999999999999 5544333233455666665544
Done!