Query 021857
Match_columns 306
No_of_seqs 134 out of 1736
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_A U1-A; protein-RNA compl 100.0 7.1E-34 2.4E-38 252.9 27.0 240 47-298 7-282 (282)
2 2adc_A Polypyrimidine tract-bi 100.0 2.8E-33 9.5E-38 242.1 21.8 191 47-299 32-228 (229)
3 4f02_A Polyadenylate-binding p 100.0 1.6E-33 5.6E-38 240.9 19.2 157 47-298 13-180 (213)
4 3tyt_A Heterogeneous nuclear r 100.0 2E-33 6.8E-38 238.9 19.2 185 47-290 2-194 (205)
5 3nmr_A Cugbp ELAV-like family 100.0 2.8E-32 9.7E-37 224.9 19.3 157 48-296 2-174 (175)
6 1qm9_A Polypyrimidine tract-bi 100.0 3.7E-32 1.3E-36 229.4 19.9 189 49-299 3-197 (198)
7 3md3_A Nuclear and cytoplasmic 100.0 3.1E-32 1.1E-36 222.6 18.6 153 50-297 1-165 (166)
8 1b7f_A Protein (SXL-lethal pro 100.0 6.6E-32 2.3E-36 221.4 20.4 153 48-296 2-168 (168)
9 1fxl_A Paraneoplastic encephal 100.0 6E-32 2E-36 221.1 19.8 152 49-296 2-167 (167)
10 2g4b_A Splicing factor U2AF 65 100.0 6.4E-32 2.2E-36 222.5 16.4 155 48-296 3-171 (172)
11 2yh0_A Splicing factor U2AF 65 100.0 1.4E-31 4.8E-36 225.4 18.6 178 48-299 3-194 (198)
12 2qfj_A FBP-interacting repress 100.0 4.2E-31 1.4E-35 225.4 20.4 168 47-300 26-206 (216)
13 1fje_B Nucleolin RBD12, protei 100.0 2.4E-31 8.3E-36 219.9 15.4 160 46-298 10-173 (175)
14 1l3k_A Heterogeneous nuclear r 100.0 1.3E-30 4.6E-35 219.0 19.0 159 47-298 11-182 (196)
15 2cjk_A Nuclear polyadenylated 100.0 1.1E-30 3.9E-35 213.9 13.9 151 48-298 2-165 (167)
16 3sde_A Paraspeckle component 1 100.0 4.7E-29 1.6E-33 219.7 19.5 149 47-297 20-177 (261)
17 3smz_A Protein raver-1, ribonu 100.0 6.7E-29 2.3E-33 221.0 20.2 159 48-300 94-265 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 5.4E-29 1.9E-33 222.4 17.0 160 48-298 116-290 (292)
19 3smz_A Protein raver-1, ribonu 100.0 2.5E-28 8.5E-33 217.3 19.9 149 47-299 20-175 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.5E-28 8.7E-33 218.1 16.2 149 45-298 37-196 (292)
21 2i2y_A Fusion protein consists 99.9 4.1E-23 1.4E-27 166.6 11.4 136 85-299 11-148 (150)
22 2kn4_A Immunoglobulin G-bindin 99.9 1.3E-21 4.6E-26 159.0 13.4 77 222-299 69-150 (158)
23 4f25_A Polyadenylate-binding p 99.8 3.2E-21 1.1E-25 148.5 9.2 75 48-129 4-84 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 1.9E-19 6.5E-24 134.8 10.3 75 222-297 18-97 (99)
25 3r27_A HnRNP L, heterogeneous 99.8 1.4E-19 4.7E-24 134.8 9.0 77 219-298 17-96 (100)
26 2cq1_A PTB-like protein L; RRM 99.8 1.6E-18 5.6E-23 129.9 12.0 78 219-299 11-91 (101)
27 4fxv_A ELAV-like protein 1; RN 99.8 7.1E-19 2.4E-23 131.6 9.7 74 47-127 17-98 (99)
28 1sjq_A Polypyrimidine tract-bi 99.8 4.9E-19 1.7E-23 133.1 8.5 76 221-299 14-92 (105)
29 2dnh_A Bruno-like 5, RNA bindi 99.8 3.4E-18 1.2E-22 129.1 12.9 83 220-302 12-100 (105)
30 1wex_A Hypothetical protein (r 99.8 1.7E-18 5.8E-23 130.6 10.8 78 219-299 11-91 (104)
31 3s8s_A Histone-lysine N-methyl 99.8 1.8E-18 6.2E-23 131.9 10.8 78 221-299 4-86 (110)
32 3r27_A HnRNP L, heterogeneous 99.8 2.1E-18 7.3E-23 128.3 10.5 76 46-128 18-97 (100)
33 4f25_A Polyadenylate-binding p 99.8 1.3E-18 4.6E-23 133.8 9.7 75 223-298 5-82 (115)
34 1why_A Hypothetical protein ri 99.8 3.5E-18 1.2E-22 127.2 11.5 79 220-300 14-94 (97)
35 2ad9_A Polypyrimidine tract-bi 99.8 1.9E-18 6.7E-23 133.0 9.7 78 219-299 27-107 (119)
36 1x4d_A Matrin 3; structural ge 99.8 1.7E-18 5.7E-23 129.9 9.0 75 221-298 13-91 (102)
37 2e5h_A Zinc finger CCHC-type a 99.8 5.3E-18 1.8E-22 125.4 11.1 76 221-297 14-94 (94)
38 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.4E-18 1.8E-22 127.6 11.3 81 220-301 12-95 (103)
39 2cq3_A RNA-binding protein 9; 99.8 9.9E-18 3.4E-22 126.1 12.6 80 220-300 12-94 (103)
40 2xnq_A Nuclear polyadenylated 99.8 4.5E-18 1.6E-22 126.7 10.5 75 47-128 20-95 (97)
41 2do4_A Squamous cell carcinoma 99.8 9.7E-18 3.3E-22 125.5 12.3 79 220-299 14-96 (100)
42 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4E-18 1.4E-22 123.6 9.8 76 221-297 5-85 (85)
43 2lea_A Serine/arginine-rich sp 99.8 6.7E-19 2.3E-23 139.3 6.1 77 222-299 46-127 (135)
44 1sjq_A Polypyrimidine tract-bi 99.8 2.4E-18 8.2E-23 129.3 8.7 76 47-129 14-93 (105)
45 2khc_A Testis-specific RNP-typ 99.8 1.2E-17 4.2E-22 128.8 12.9 78 219-297 36-118 (118)
46 2x1f_A MRNA 3'-END-processing 99.8 3.7E-18 1.3E-22 126.8 9.6 77 222-299 1-82 (96)
47 2d9p_A Polyadenylate-binding p 99.8 8.1E-18 2.8E-22 126.6 11.5 80 221-301 13-95 (103)
48 2diu_A KIAA0430 protein; struc 99.8 4.2E-18 1.4E-22 123.8 9.4 77 47-132 6-88 (96)
49 2dgv_A HnRNP M, heterogeneous 99.7 6.9E-18 2.3E-22 124.2 10.6 78 221-299 6-86 (92)
50 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.7E-18 2E-22 123.3 10.0 77 222-299 5-86 (87)
51 2la6_A RNA-binding protein FUS 99.7 9.5E-18 3.2E-22 125.3 11.5 77 220-297 10-99 (99)
52 2cqc_A Arginine/serine-rich sp 99.7 7E-18 2.4E-22 124.9 10.6 78 220-298 12-94 (95)
53 1x4a_A Splicing factor, argini 99.7 1.1E-17 3.9E-22 127.2 12.0 80 220-300 19-100 (109)
54 4a8x_A RNA-binding protein wit 99.7 5.8E-18 2E-22 123.4 9.9 78 222-300 3-86 (88)
55 2dnz_A Probable RNA-binding pr 99.7 8.2E-18 2.8E-22 124.6 10.9 78 222-300 4-86 (95)
56 1x4f_A Matrin 3; structural ge 99.7 6.8E-18 2.3E-22 128.5 10.5 76 220-298 22-101 (112)
57 2cpj_A Non-POU domain-containi 99.7 8.4E-18 2.9E-22 125.6 10.8 77 220-299 12-89 (99)
58 2khc_A Testis-specific RNP-typ 99.7 1.5E-17 5.1E-22 128.3 12.5 75 45-126 36-118 (118)
59 2cpz_A CUG triplet repeat RNA- 99.7 1.3E-17 4.3E-22 128.1 11.9 81 219-300 21-106 (115)
60 2ytc_A PRE-mRNA-splicing facto 99.7 8E-18 2.7E-22 122.0 9.9 74 221-297 10-85 (85)
61 2dnq_A RNA-binding protein 4B; 99.7 8.5E-18 2.9E-22 123.3 10.1 76 221-301 6-82 (90)
62 3lqv_A PRE-mRNA branch site pr 99.7 3.6E-18 1.2E-22 131.2 8.4 75 47-128 6-85 (115)
63 2e5j_A Methenyltetrahydrofolat 99.7 1.1E-17 3.8E-22 124.5 10.7 77 221-299 17-94 (97)
64 2jvr_A Nucleolar protein 3; RN 99.7 2.5E-18 8.7E-23 131.1 7.3 78 222-300 27-106 (111)
65 1whw_A Hypothetical protein ri 99.7 9.1E-18 3.1E-22 125.3 10.2 79 221-300 6-89 (99)
66 3s8s_A Histone-lysine N-methyl 99.7 6.7E-18 2.3E-22 128.8 9.5 77 47-130 4-88 (110)
67 2jvo_A Nucleolar protein 3; nu 99.7 6.4E-18 2.2E-22 128.5 9.4 79 219-302 27-106 (108)
68 2ywk_A Putative RNA-binding pr 99.7 7.1E-18 2.4E-22 124.9 9.4 77 221-298 14-94 (95)
69 2cq0_A Eukaryotic translation 99.7 1.7E-17 5.9E-22 124.8 11.6 80 220-300 12-96 (103)
70 2wbr_A GW182, gawky, LD47780P; 99.7 1.1E-17 3.7E-22 120.5 9.9 72 48-126 6-79 (89)
71 2cq1_A PTB-like protein L; RRM 99.7 1.5E-17 5.2E-22 124.6 11.1 78 45-129 11-92 (101)
72 2lkz_A RNA-binding protein 5; 99.7 3.8E-18 1.3E-22 126.6 7.5 76 222-298 8-94 (95)
73 2dgs_A DAZ-associated protein 99.7 1.9E-17 6.4E-22 123.7 11.3 78 221-300 8-90 (99)
74 2dnm_A SRP46 splicing factor; 99.7 8.4E-18 2.9E-22 126.5 9.5 78 221-299 11-93 (103)
75 2a3j_A U1 small nuclear ribonu 99.7 7.7E-18 2.6E-22 131.6 9.5 79 220-299 26-110 (127)
76 1wex_A Hypothetical protein (r 99.7 1.3E-17 4.5E-22 125.7 10.5 76 47-129 13-92 (104)
77 1x4d_A Matrin 3; structural ge 99.7 5.6E-18 1.9E-22 127.1 8.3 78 46-130 12-94 (102)
78 2cph_A RNA binding motif prote 99.7 1.6E-17 5.5E-22 125.7 11.0 79 220-299 12-97 (107)
79 1sjr_A Polypyrimidine tract-bi 99.7 7.2E-18 2.5E-22 136.3 9.5 77 223-299 46-124 (164)
80 2cpf_A RNA binding motif prote 99.7 7E-18 2.4E-22 125.7 8.7 79 222-301 4-90 (98)
81 3md1_A Nuclear and cytoplasmic 99.7 1.4E-17 4.9E-22 120.0 10.1 75 224-299 2-81 (83)
82 2dgx_A KIAA0430 protein; RRM d 99.7 9.5E-18 3.2E-22 124.7 9.3 78 222-300 8-91 (96)
83 2dgo_A Cytotoxic granule-assoc 99.7 2.2E-17 7.4E-22 126.8 11.5 79 220-299 12-95 (115)
84 2hvz_A Splicing factor, argini 99.7 9.8E-18 3.4E-22 125.7 9.2 73 50-129 1-76 (101)
85 2xnq_A Nuclear polyadenylated 99.7 1.3E-17 4.6E-22 124.2 9.8 76 219-299 18-95 (97)
86 2wbr_A GW182, gawky, LD47780P; 99.7 7.8E-18 2.7E-22 121.2 8.2 72 223-297 7-79 (89)
87 1x5u_A Splicing factor 3B subu 99.7 2.2E-17 7.4E-22 124.6 11.0 81 220-301 12-97 (105)
88 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-17 4.5E-22 128.3 9.9 79 45-130 27-109 (119)
89 1x4c_A Splicing factor, argini 99.7 2.3E-17 7.7E-22 125.4 11.0 75 222-299 14-93 (108)
90 2dgt_A RNA-binding protein 30; 99.7 1.6E-17 5.6E-22 122.3 9.9 76 221-301 8-84 (92)
91 3zzy_A Polypyrimidine tract-bi 99.7 1.4E-17 4.7E-22 129.8 9.9 75 224-299 29-106 (130)
92 2e5i_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 125.8 13.3 77 221-299 21-102 (124)
93 2jrs_A RNA-binding protein 39; 99.7 2.8E-17 9.6E-22 124.9 11.4 80 219-299 22-106 (108)
94 1x4f_A Matrin 3; structural ge 99.7 1.4E-17 4.8E-22 126.8 9.6 79 45-130 21-104 (112)
95 2jvo_A Nucleolar protein 3; nu 99.7 7.5E-18 2.6E-22 128.1 8.1 76 47-129 29-104 (108)
96 1u6f_A Tcubp1, RNA-binding pro 99.7 8.6E-17 3E-21 127.6 14.6 82 219-301 38-124 (139)
97 3ulh_A THO complex subunit 4; 99.7 2.5E-17 8.6E-22 124.7 11.0 77 221-298 27-107 (107)
98 2cpd_A Apobec-1 stimulating pr 99.7 4.7E-17 1.6E-21 121.5 12.3 79 46-129 12-90 (99)
99 2la4_A Nuclear and cytoplasmic 99.7 1.2E-17 4E-22 125.3 9.0 74 222-298 26-100 (101)
100 2do0_A HnRNP M, heterogeneous 99.7 4E-17 1.4E-21 125.0 12.2 79 220-299 12-94 (114)
101 2err_A Ataxin-2-binding protei 99.7 1.4E-17 4.7E-22 126.8 9.5 79 220-299 26-107 (109)
102 2fy1_A RNA-binding motif prote 99.7 1.8E-17 6.2E-22 127.6 10.2 78 222-300 6-87 (116)
103 2kxn_B Transformer-2 protein h 99.7 1.7E-17 5.8E-22 130.2 10.2 80 219-299 42-126 (129)
104 1x5o_A RNA binding motif, sing 99.7 9.8E-17 3.4E-21 122.9 14.1 79 221-299 23-112 (114)
105 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.9E-17 9.8E-22 119.0 10.5 74 46-126 4-85 (85)
106 2div_A TRNA selenocysteine ass 99.7 1.9E-17 6.4E-22 123.6 9.8 77 222-299 8-94 (99)
107 1x5s_A Cold-inducible RNA-bind 99.7 1.7E-17 5.7E-22 124.6 9.5 80 221-301 10-94 (102)
108 1p27_B RNA-binding protein 8A; 99.7 2.1E-17 7.3E-22 124.9 10.2 78 221-299 21-103 (106)
109 2cqp_A RNA-binding protein 12; 99.7 1.5E-17 5.1E-22 123.9 9.1 78 221-299 13-95 (98)
110 2kvi_A Nuclear polyadenylated 99.7 2.1E-17 7.1E-22 122.8 9.7 75 220-299 7-83 (96)
111 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.6E-17 2.2E-21 121.6 12.6 78 46-130 12-95 (103)
112 2dnq_A RNA-binding protein 4B; 99.7 2.3E-17 8E-22 121.0 9.7 77 47-130 6-82 (90)
113 1x4e_A RNA binding motif, sing 99.7 7.1E-18 2.4E-22 122.3 6.8 75 222-297 4-83 (85)
114 2cpd_A Apobec-1 stimulating pr 99.7 3.9E-17 1.3E-21 122.0 11.0 76 220-300 12-90 (99)
115 2dnp_A RNA-binding protein 14; 99.7 1.9E-17 6.3E-22 121.5 9.0 76 221-301 7-83 (90)
116 2cpi_A CCR4-NOT transcription 99.7 2E-17 6.8E-22 126.3 9.5 79 222-301 14-103 (111)
117 2dgu_A Heterogeneous nuclear r 99.7 1.8E-17 6.1E-22 124.8 9.0 75 222-301 10-85 (103)
118 2a3j_A U1 small nuclear ribonu 99.7 2.8E-17 9.6E-22 128.4 10.4 79 47-132 27-114 (127)
119 3lqv_A PRE-mRNA branch site pr 99.7 3.1E-17 1.1E-21 125.9 10.5 76 222-298 7-84 (115)
120 1x4g_A Nucleolysin TIAR; struc 99.7 1.8E-17 6.1E-22 126.1 8.9 77 221-300 23-100 (109)
121 2dgu_A Heterogeneous nuclear r 99.7 5.7E-17 1.9E-21 122.0 11.6 77 47-130 9-85 (103)
122 3n9u_C Cleavage and polyadenyl 99.7 1.3E-17 4.3E-22 135.2 8.5 76 47-129 53-138 (156)
123 2diu_A KIAA0430 protein; struc 99.7 2.3E-17 7.7E-22 120.0 8.8 72 221-299 6-84 (96)
124 2lkz_A RNA-binding protein 5; 99.7 1.9E-17 6.4E-22 122.8 8.6 75 46-127 6-94 (95)
125 1x4a_A Splicing factor, argini 99.7 9.5E-17 3.3E-21 122.0 12.8 76 47-129 20-100 (109)
126 2dgp_A Bruno-like 4, RNA bindi 99.7 2.2E-17 7.7E-22 124.8 9.2 81 220-301 10-98 (106)
127 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-17 5.5E-22 124.7 8.3 78 222-300 11-93 (102)
128 2la4_A Nuclear and cytoplasmic 99.7 4.3E-18 1.5E-22 127.6 5.1 74 47-127 25-100 (101)
129 1x4h_A RNA-binding protein 28; 99.7 3.9E-17 1.3E-21 124.5 10.6 78 221-299 13-101 (111)
130 2cpz_A CUG triplet repeat RNA- 99.7 3.7E-17 1.3E-21 125.5 10.5 78 46-130 22-107 (115)
131 2dgt_A RNA-binding protein 30; 99.7 4.7E-17 1.6E-21 119.8 10.5 78 46-130 7-84 (92)
132 3p5t_L Cleavage and polyadenyl 99.7 7.5E-18 2.6E-22 123.7 6.1 76 224-300 2-84 (90)
133 1wi8_A EIF-4B, eukaryotic tran 99.7 4.3E-17 1.5E-21 122.9 10.5 77 221-300 13-95 (104)
134 1u6f_A Tcubp1, RNA-binding pro 99.7 1.8E-16 6.2E-21 125.8 14.6 78 46-130 39-124 (139)
135 2lxi_A RNA-binding protein 10; 99.7 1.2E-17 4E-22 123.0 7.1 74 49-129 1-84 (91)
136 1x5t_A Splicing factor 3B subu 99.7 1.5E-17 5.2E-22 123.3 7.8 78 222-300 4-87 (96)
137 3ns6_A Eukaryotic translation 99.7 1.1E-17 3.8E-22 125.3 7.1 76 222-297 5-91 (100)
138 2lxi_A RNA-binding protein 10; 99.7 4.4E-18 1.5E-22 125.3 4.7 77 223-300 1-84 (91)
139 1whx_A Hypothetical protein ri 99.7 2E-17 7E-22 126.3 8.6 74 222-298 9-83 (111)
140 2dng_A Eukaryotic translation 99.7 6.4E-17 2.2E-21 121.7 11.2 77 221-300 13-94 (103)
141 2cpx_A Hypothetical protein FL 99.7 4.3E-17 1.5E-21 125.0 10.4 81 220-301 22-107 (115)
142 2err_A Ataxin-2-binding protei 99.7 3.3E-17 1.1E-21 124.7 9.5 75 47-128 27-107 (109)
143 1nu4_A U1A RNA binding domain; 99.7 1.3E-17 4.3E-22 124.0 7.1 80 220-300 5-90 (97)
144 2e5h_A Zinc finger CCHC-type a 99.7 8.3E-17 2.9E-21 118.8 11.4 73 47-126 14-94 (94)
145 2krb_A Eukaryotic translation 99.7 1.4E-17 4.8E-22 119.7 6.9 72 223-294 1-80 (81)
146 1whw_A Hypothetical protein ri 99.7 9.7E-17 3.3E-21 119.7 11.7 78 46-130 5-90 (99)
147 2x1f_A MRNA 3'-END-processing 99.7 6E-17 2.1E-21 120.2 10.5 76 48-130 1-84 (96)
148 1wf1_A RNA-binding protein RAL 99.7 8.5E-17 2.9E-21 122.5 11.5 76 220-300 24-101 (110)
149 1x5u_A Splicing factor 3B subu 99.7 9.3E-17 3.2E-21 121.1 11.6 77 47-130 13-97 (105)
150 3tyt_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 138.9 10.0 77 221-299 2-80 (205)
151 2ytc_A PRE-mRNA-splicing facto 99.7 5.3E-17 1.8E-21 117.6 9.8 73 47-126 10-85 (85)
152 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.2E-17 1.4E-21 118.6 9.2 75 47-128 4-86 (87)
153 2dnp_A RNA-binding protein 14; 99.7 6.8E-17 2.3E-21 118.5 10.4 76 47-129 7-82 (90)
154 2kt5_A RNA and export factor-b 99.7 3.6E-16 1.2E-20 121.6 15.0 81 221-302 33-117 (124)
155 2cqc_A Arginine/serine-rich sp 99.7 8.3E-17 2.9E-21 119.0 10.7 75 46-127 12-94 (95)
156 2hvz_A Splicing factor, argini 99.7 1.5E-17 5.3E-22 124.6 6.8 75 224-300 1-76 (101)
157 1sjr_A Polypyrimidine tract-bi 99.7 5.6E-17 1.9E-21 131.1 10.5 79 47-130 44-126 (164)
158 2cpj_A Non-POU domain-containi 99.7 5.6E-17 1.9E-21 121.1 9.7 76 47-129 13-90 (99)
159 2kxn_B Transformer-2 protein h 99.7 3.6E-17 1.2E-21 128.3 9.0 77 45-128 42-126 (129)
160 2e5j_A Methenyltetrahydrofolat 99.7 1.6E-16 5.5E-21 118.2 12.1 75 47-128 17-94 (97)
161 2cq3_A RNA-binding protein 9; 99.7 1.5E-16 5.1E-21 119.6 12.0 78 46-130 12-95 (103)
162 2dnz_A Probable RNA-binding pr 99.7 8.6E-17 2.9E-21 119.0 10.5 76 47-129 3-86 (95)
163 2kvi_A Nuclear polyadenylated 99.7 2.3E-17 7.7E-22 122.6 7.2 78 46-130 7-85 (96)
164 2dhg_A TRNA selenocysteine ass 99.7 6.5E-17 2.2E-21 121.8 9.9 79 221-300 7-91 (104)
165 1s79_A Lupus LA protein; RRM, 99.7 3.4E-17 1.2E-21 123.3 8.3 75 222-298 10-88 (103)
166 2dgx_A KIAA0430 protein; RRM d 99.7 8.6E-17 2.9E-21 119.5 10.3 76 47-129 7-91 (96)
167 2nlw_A Eukaryotic translation 99.7 3.4E-17 1.1E-21 123.8 8.2 76 222-297 14-98 (105)
168 2cq2_A Hypothetical protein LO 99.7 2.2E-17 7.5E-22 125.8 7.1 76 221-298 23-105 (114)
169 2e44_A Insulin-like growth fac 99.7 6.6E-17 2.3E-21 119.9 9.6 77 222-299 14-92 (96)
170 1oo0_B CG8781-PA, drosophila Y 99.7 6E-17 2.1E-21 123.3 9.5 78 221-299 24-106 (110)
171 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.1E-17 7E-22 123.8 6.8 76 220-298 16-97 (100)
172 2jrs_A RNA-binding protein 39; 99.7 6.9E-17 2.3E-21 122.7 9.7 76 47-129 24-107 (108)
173 2do4_A Squamous cell carcinoma 99.7 1.7E-16 5.8E-21 118.6 11.8 76 47-129 15-97 (100)
174 2fc9_A NCL protein; structure 99.7 4.5E-17 1.5E-21 122.0 8.4 76 221-300 13-92 (101)
175 2cq4_A RNA binding motif prote 99.7 5.8E-17 2E-21 124.2 9.1 75 222-298 24-103 (114)
176 1x4g_A Nucleolysin TIAR; struc 99.7 1E-16 3.4E-21 121.9 10.2 78 46-130 22-101 (109)
177 1x5s_A Cold-inducible RNA-bind 99.7 8.8E-17 3E-21 120.6 9.8 78 46-130 9-94 (102)
178 2dgs_A DAZ-associated protein 99.7 1.5E-16 5.2E-21 118.7 11.0 76 47-130 8-91 (99)
179 2cpe_A RNA-binding protein EWS 99.7 8.4E-17 2.9E-21 123.1 9.8 80 220-300 12-104 (113)
180 2d9p_A Polyadenylate-binding p 99.7 9.1E-17 3.1E-21 120.8 9.8 80 44-130 10-95 (103)
181 1whx_A Hypothetical protein ri 99.7 6.8E-17 2.3E-21 123.4 9.1 76 48-130 9-86 (111)
182 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.1E-17 3.1E-21 131.4 10.5 77 222-299 71-152 (165)
183 1x5t_A Splicing factor 3B subu 99.7 6.1E-17 2.1E-21 120.1 8.6 76 47-129 3-87 (96)
184 2ek1_A RNA-binding protein 12; 99.7 2.9E-17 1E-21 121.5 6.8 76 221-297 13-93 (95)
185 3md1_A Nuclear and cytoplasmic 99.7 8.9E-17 3E-21 115.8 9.2 73 49-128 1-81 (83)
186 3ucg_A Polyadenylate-binding p 99.7 7.8E-17 2.7E-21 117.7 8.8 75 223-299 6-85 (89)
187 2cph_A RNA binding motif prote 99.7 1.9E-16 6.7E-21 119.7 11.3 78 46-130 12-99 (107)
188 3ex7_B RNA-binding protein 8A; 99.7 8.7E-17 3E-21 125.4 9.5 78 221-299 20-102 (126)
189 2jvr_A Nucleolar protein 3; RN 99.7 9.7E-17 3.3E-21 122.3 9.5 74 48-128 27-105 (111)
190 4a8x_A RNA-binding protein wit 99.7 1.9E-16 6.4E-21 115.4 10.5 74 48-128 3-85 (88)
191 2dnm_A SRP46 splicing factor; 99.7 1.3E-16 4.3E-21 120.0 9.9 76 47-129 11-94 (103)
192 2dgw_A Probable RNA-binding pr 99.7 2.1E-16 7.1E-21 116.0 10.7 75 222-299 9-87 (91)
193 2dgv_A HnRNP M, heterogeneous 99.7 1E-16 3.5E-21 117.9 9.0 76 47-129 6-87 (92)
194 2cqd_A RNA-binding region cont 99.7 1.9E-16 6.5E-21 121.7 10.9 78 220-299 14-96 (116)
195 3s7r_A Heterogeneous nuclear r 99.7 1.6E-16 5.6E-21 115.6 9.9 74 221-296 9-87 (87)
196 1x4h_A RNA-binding protein 28; 99.7 2.8E-16 9.7E-21 119.6 11.7 77 47-130 13-103 (111)
197 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.4E-16 4.8E-21 119.5 9.7 77 46-129 9-93 (102)
198 1x5p_A Negative elongation fac 99.7 2.9E-16 9.9E-21 116.8 11.3 75 221-300 13-88 (97)
199 2dgo_A Cytotoxic granule-assoc 99.7 2.3E-16 7.7E-21 121.0 11.1 78 46-130 12-97 (115)
200 1p1t_A Cleavage stimulation fa 99.7 7.9E-17 2.7E-21 121.2 8.3 77 222-299 7-88 (104)
201 2dnh_A Bruno-like 5, RNA bindi 99.7 2.2E-16 7.7E-21 119.0 10.8 80 47-130 13-99 (105)
202 1why_A Hypothetical protein ri 99.7 3.6E-16 1.2E-20 116.2 11.8 77 47-128 15-93 (97)
203 2cpf_A RNA binding motif prote 99.7 9.8E-17 3.4E-21 119.4 8.7 76 47-129 3-89 (98)
204 1nu4_A U1A RNA binding domain; 99.7 2.3E-16 7.8E-21 117.2 10.6 77 47-130 6-91 (97)
205 2la6_A RNA-binding protein FUS 99.7 1.5E-16 5.1E-21 118.7 9.6 73 47-126 11-99 (99)
206 2fc9_A NCL protein; structure 99.7 1.7E-16 5.9E-21 118.8 10.0 76 47-129 13-92 (101)
207 2cq4_A RNA binding motif prote 99.7 9.7E-17 3.3E-21 122.9 8.7 76 47-130 23-106 (114)
208 2cq0_A Eukaryotic translation 99.7 1.1E-16 3.8E-21 120.3 8.9 77 46-129 12-96 (103)
209 3zzy_A Polypyrimidine tract-bi 99.7 1.7E-16 5.9E-21 123.6 10.1 77 47-130 26-108 (130)
210 2dgp_A Bruno-like 4, RNA bindi 99.7 2E-16 6.7E-21 119.5 10.2 79 47-129 11-97 (106)
211 1p27_B RNA-binding protein 8A; 99.7 1.8E-16 6.2E-21 119.7 9.9 75 47-128 21-103 (106)
212 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.3E-16 7.9E-21 127.7 11.1 79 220-299 36-119 (156)
213 3n9u_C Cleavage and polyadenyl 99.7 1.3E-16 4.4E-21 129.2 9.5 76 222-298 54-136 (156)
214 1x4c_A Splicing factor, argini 99.7 3.2E-16 1.1E-20 118.9 11.2 75 48-129 14-94 (108)
215 2ywk_A Putative RNA-binding pr 99.7 1.2E-16 4.1E-21 118.2 8.6 74 47-127 14-94 (95)
216 2fc8_A NCL protein; structure 99.7 2.3E-16 8E-21 118.3 10.3 77 47-130 13-94 (102)
217 2dh8_A DAZ-associated protein 99.7 1.8E-16 6.2E-21 119.6 9.6 78 220-299 13-95 (105)
218 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-16 5.3E-21 120.9 9.3 76 46-129 22-105 (109)
219 3beg_B Splicing factor, argini 99.7 5E-17 1.7E-21 124.9 6.6 68 223-294 16-83 (115)
220 2cq2_A Hypothetical protein LO 99.7 1.2E-16 4.3E-21 121.6 8.6 79 46-128 22-106 (114)
221 1oo0_B CG8781-PA, drosophila Y 99.7 3E-16 1E-20 119.4 10.8 76 47-129 24-107 (110)
222 3ns6_A Eukaryotic translation 99.7 6.6E-17 2.2E-21 121.1 6.9 77 47-130 4-95 (100)
223 2m2b_A RNA-binding protein 10; 99.7 9.1E-17 3.1E-21 126.3 7.9 77 221-299 21-108 (131)
224 2cqh_A IGF-II mRNA-binding pro 99.7 1E-16 3.5E-21 118.2 7.7 74 222-299 7-83 (93)
225 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-16 8.8E-21 124.8 10.6 76 220-296 60-140 (140)
226 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.1E-17 1.7E-21 121.7 6.1 73 47-128 17-98 (100)
227 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.8E-21 118.0 7.7 76 47-129 6-84 (93)
228 2cpx_A Hypothetical protein FL 99.7 2.6E-16 8.9E-21 120.6 10.0 77 47-130 23-107 (115)
229 2ki2_A SS-DNA binding protein 99.7 3.3E-17 1.1E-21 120.1 4.7 75 224-300 2-81 (90)
230 1wf1_A RNA-binding protein RAL 99.7 3.3E-16 1.1E-20 119.2 10.4 75 47-128 25-100 (110)
231 1fjc_A Nucleolin RBD2, protein 99.7 1E-16 3.5E-21 118.9 7.2 78 220-299 13-91 (96)
232 1wg1_A KIAA1579 protein, homol 99.7 1.2E-16 4.2E-21 116.7 7.4 73 222-298 4-77 (88)
233 2div_A TRNA selenocysteine ass 99.7 1.3E-16 4.6E-21 118.9 7.8 76 46-128 6-94 (99)
234 1wez_A HnRNP H', FTP-3, hetero 99.7 4.6E-16 1.6E-20 116.9 10.5 75 222-299 14-92 (102)
235 1fj7_A Nucleolin RBD1, protein 99.7 7E-17 2.4E-21 121.0 5.7 81 222-305 16-101 (101)
236 2cpe_A RNA-binding protein EWS 99.7 3.8E-16 1.3E-20 119.4 9.7 78 46-130 12-105 (113)
237 2fc8_A NCL protein; structure 99.7 3.6E-16 1.2E-20 117.2 9.5 76 220-299 12-92 (102)
238 3ulh_A THO complex subunit 4; 99.7 4.2E-16 1.4E-20 117.9 9.9 73 47-126 27-106 (107)
239 2fy1_A RNA-binding motif prote 99.7 7.5E-16 2.6E-20 118.5 11.4 78 46-130 4-88 (116)
240 3p5t_L Cleavage and polyadenyl 99.7 4.6E-17 1.6E-21 119.5 4.3 73 50-129 2-84 (90)
241 2db1_A Heterogeneous nuclear r 99.7 3.4E-16 1.2E-20 120.8 9.4 75 221-297 15-96 (118)
242 2cqd_A RNA-binding region cont 99.7 7.5E-16 2.6E-20 118.3 11.3 76 46-129 14-97 (116)
243 1x5p_A Negative elongation fac 99.7 1.1E-15 3.7E-20 113.7 11.7 75 47-130 13-89 (97)
244 1s79_A Lupus LA protein; RRM, 99.7 2.2E-16 7.6E-21 118.8 8.0 77 46-130 8-91 (103)
245 2m2b_A RNA-binding protein 10; 99.7 2.9E-16 9.9E-21 123.4 8.9 75 47-129 21-109 (131)
246 2jwn_A Embryonic polyadenylate 99.7 2.7E-16 9.2E-21 122.3 8.6 77 222-300 35-116 (124)
247 2do0_A HnRNP M, heterogeneous 99.7 6.2E-16 2.1E-20 118.3 10.5 75 47-128 13-94 (114)
248 2cqp_A RNA-binding protein 12; 99.7 2.2E-16 7.5E-21 117.5 7.8 75 47-128 13-95 (98)
249 2mss_A Protein (musashi1); RNA 99.7 1.1E-16 3.6E-21 113.2 5.7 70 225-296 1-75 (75)
250 2rs2_A Musashi-1, RNA-binding 99.7 2.7E-16 9.4E-21 119.6 8.4 77 220-298 22-103 (109)
251 1x4b_A Heterogeneous nuclear r 99.7 3E-16 1E-20 120.6 8.6 76 222-299 26-106 (116)
252 1fj7_A Nucleolin RBD1, protein 99.7 4.4E-16 1.5E-20 116.6 9.3 75 47-129 15-96 (101)
253 1wel_A RNA-binding protein 12; 99.7 5.5E-16 1.9E-20 120.6 10.2 76 221-298 23-103 (124)
254 2cqg_A TDP-43, TAR DNA-binding 99.7 8.6E-16 3E-20 115.4 10.9 77 220-299 12-93 (103)
255 1fjc_A Nucleolin RBD2, protein 99.6 2.3E-16 8E-21 116.9 7.6 77 46-129 13-92 (96)
256 2dng_A Eukaryotic translation 99.6 6.4E-16 2.2E-20 116.1 10.0 74 47-129 13-94 (103)
257 2dhg_A TRNA selenocysteine ass 99.6 2.4E-16 8.3E-21 118.6 7.6 77 47-130 7-92 (104)
258 3ex7_B RNA-binding protein 8A; 99.6 7E-16 2.4E-20 120.2 10.5 77 47-130 20-104 (126)
259 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.2E-15 4E-20 120.9 12.0 74 45-125 59-140 (140)
260 2dis_A Unnamed protein product 99.6 3.1E-16 1.1E-20 119.1 8.2 77 222-299 7-92 (109)
261 2nlw_A Eukaryotic translation 99.6 5.3E-16 1.8E-20 117.1 9.5 75 47-128 13-100 (105)
262 2cpy_A RNA-binding protein 12; 99.6 4.3E-16 1.5E-20 119.4 9.0 76 221-298 13-93 (114)
263 1wg1_A KIAA1579 protein, homol 99.6 5.3E-16 1.8E-20 113.2 9.0 76 48-129 4-79 (88)
264 3egn_A RNA-binding protein 40; 99.6 3.7E-16 1.3E-20 124.6 8.8 78 220-298 42-129 (143)
265 1wg5_A Heterogeneous nuclear r 99.6 9.4E-16 3.2E-20 115.5 10.5 76 221-298 13-93 (104)
266 1wi8_A EIF-4B, eukaryotic tran 99.6 9.5E-16 3.2E-20 115.4 10.5 75 47-130 13-96 (104)
267 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.9E-16 6.5E-21 112.4 6.1 71 224-296 1-76 (77)
268 2cpi_A CCR4-NOT transcription 99.6 2.7E-16 9.2E-21 120.0 7.4 76 47-129 13-102 (111)
269 2e5i_A Heterogeneous nuclear r 99.6 3E-15 1E-19 116.0 13.3 75 49-130 25-104 (124)
270 2dis_A Unnamed protein product 99.6 5.3E-16 1.8E-20 117.7 8.9 77 47-130 6-94 (109)
271 3ucg_A Polyadenylate-binding p 99.6 5.9E-16 2E-20 113.0 8.8 73 48-128 5-85 (89)
272 2i2y_A Fusion protein consists 99.6 1.1E-15 3.7E-20 122.9 11.0 76 46-128 70-148 (150)
273 1x5o_A RNA binding motif, sing 99.6 1.9E-15 6.6E-20 115.6 11.8 79 46-128 22-112 (114)
274 1p1t_A Cleavage stimulation fa 99.6 2.1E-16 7.3E-21 118.8 6.1 77 47-130 6-90 (104)
275 2jwn_A Embryonic polyadenylate 99.6 3.4E-16 1.2E-20 121.7 7.3 75 47-129 34-116 (124)
276 1x4b_A Heterogeneous nuclear r 99.6 4.6E-16 1.6E-20 119.5 7.9 77 46-130 24-108 (116)
277 2hgl_A HNRPF protein, heteroge 99.6 4.8E-16 1.6E-20 122.7 8.0 74 222-297 43-123 (136)
278 2e5g_A U6 snRNA-specific termi 99.6 1.1E-15 3.6E-20 113.0 9.4 73 222-297 7-80 (94)
279 3s7r_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 111.3 9.2 72 46-125 8-87 (87)
280 2ek1_A RNA-binding protein 12; 99.6 2.4E-16 8.3E-21 116.6 5.9 73 47-126 13-93 (95)
281 2kt5_A RNA and export factor-b 99.6 2E-15 7E-20 117.3 11.4 76 47-129 33-115 (124)
282 2bz2_A Negative elongation fac 99.6 1.1E-15 3.8E-20 118.4 9.6 75 221-300 37-112 (121)
283 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.5E-20 112.0 8.5 73 221-298 9-83 (89)
284 2lea_A Serine/arginine-rich sp 99.6 4E-16 1.4E-20 123.3 6.8 77 46-129 44-128 (135)
285 1x4e_A RNA binding motif, sing 99.6 1.7E-16 5.7E-21 115.0 4.0 72 47-125 3-82 (85)
286 2dh8_A DAZ-associated protein 99.6 6.3E-16 2.1E-20 116.6 7.4 77 46-130 13-97 (105)
287 2kn4_A Immunoglobulin G-bindin 99.6 3.5E-15 1.2E-19 120.8 12.1 76 47-129 68-151 (158)
288 1wel_A RNA-binding protein 12; 99.6 5.4E-16 1.9E-20 120.6 6.9 75 47-129 23-105 (124)
289 4f02_A Polyadenylate-binding p 99.6 1.6E-15 5.6E-20 129.0 10.3 77 221-298 13-94 (213)
290 2cpy_A RNA-binding protein 12; 99.6 1.5E-15 5E-20 116.5 9.0 75 47-129 13-95 (114)
291 2cqg_A TDP-43, TAR DNA-binding 99.6 3.7E-15 1.3E-19 111.9 11.1 76 46-130 12-95 (103)
292 1h2v_Z 20 kDa nuclear CAP bind 99.6 2E-15 6.8E-20 122.1 10.2 76 47-129 37-120 (156)
293 2dgw_A Probable RNA-binding pr 99.6 3.6E-15 1.2E-19 109.4 10.6 77 47-128 8-87 (91)
294 2f3j_A RNA and export factor b 99.6 1.7E-15 5.7E-20 125.2 9.7 79 221-300 86-168 (177)
295 2hzc_A Splicing factor U2AF 65 99.6 8.9E-16 3E-20 111.5 7.2 69 222-294 5-84 (87)
296 3q2s_C Cleavage and polyadenyl 99.6 9.3E-16 3.2E-20 132.0 8.4 77 222-299 67-150 (229)
297 2dnn_A RNA-binding protein 12; 99.6 1.5E-15 5.2E-20 115.3 8.6 72 222-296 15-90 (109)
298 2mss_A Protein (musashi1); RNA 99.6 7E-16 2.4E-20 108.9 6.3 67 51-125 1-75 (75)
299 2lmi_A GRSF-1, G-rich sequence 99.6 6.4E-16 2.2E-20 117.1 6.5 74 222-297 10-90 (107)
300 2krb_A Eukaryotic translation 99.6 7.1E-16 2.4E-20 110.7 6.4 67 49-122 1-80 (81)
301 1wg5_A Heterogeneous nuclear r 99.6 4.6E-15 1.6E-19 111.8 10.5 74 47-128 13-94 (104)
302 2e44_A Insulin-like growth fac 99.6 2.7E-15 9.2E-20 111.1 9.1 75 47-128 13-92 (96)
303 2hzc_A Splicing factor U2AF 65 99.6 1.4E-15 4.7E-20 110.5 7.2 74 47-124 4-86 (87)
304 1iqt_A AUF1, heterogeneous nuc 99.6 4.7E-16 1.6E-20 109.8 4.5 70 225-296 1-75 (75)
305 2db1_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 117.6 7.3 75 47-129 15-99 (118)
306 3pgw_A U1-A; protein-RNA compl 99.6 1.7E-14 5.8E-19 127.6 15.3 75 46-126 204-281 (282)
307 2lcw_A RNA-binding protein FUS 99.4 8.1E-17 2.8E-21 123.8 0.0 78 221-299 5-95 (116)
308 3u1l_A PRE-mRNA-splicing facto 99.6 2E-15 6.8E-20 129.8 8.4 76 221-298 132-228 (240)
309 2bz2_A Negative elongation fac 99.6 4.5E-15 1.5E-19 115.0 9.6 74 47-129 37-112 (121)
310 3egn_A RNA-binding protein 40; 99.6 2.6E-15 8.8E-20 119.7 8.4 76 47-129 43-131 (143)
311 2xs2_A Deleted in azoospermia- 99.6 1.6E-15 5.3E-20 113.8 6.5 73 222-297 8-84 (102)
312 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.9E-15 1.7E-19 121.0 9.8 77 47-130 70-154 (165)
313 2ki2_A SS-DNA binding protein 99.6 4E-16 1.4E-20 114.2 2.9 72 50-129 2-81 (90)
314 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.1E-15 3.7E-20 108.4 4.9 68 50-125 1-76 (77)
315 2hgl_A HNRPF protein, heteroge 99.6 1.4E-15 4.9E-20 120.0 6.0 75 47-129 42-126 (136)
316 1b7f_A Protein (SXL-lethal pro 99.6 5.6E-15 1.9E-19 120.2 9.7 77 222-299 2-83 (168)
317 1fxl_A Paraneoplastic encephal 99.6 7.9E-15 2.7E-19 118.9 10.5 76 223-299 2-82 (167)
318 2adc_A Polypyrimidine tract-bi 99.6 3.1E-15 1.1E-19 128.7 8.5 78 220-299 31-110 (229)
319 2hgn_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 121.1 4.8 75 222-299 45-123 (139)
320 3md3_A Nuclear and cytoplasmic 99.6 5E-15 1.7E-19 120.0 8.5 75 224-299 1-79 (166)
321 3beg_B Splicing factor, argini 99.6 4.3E-15 1.5E-19 114.0 7.6 73 48-127 15-93 (115)
322 2e5g_A U6 snRNA-specific termi 99.6 5.2E-15 1.8E-19 109.3 7.7 75 47-129 6-83 (94)
323 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-15 7.3E-20 109.9 5.3 73 222-299 4-78 (88)
324 1wez_A HnRNP H', FTP-3, hetero 99.6 2.9E-15 9.8E-20 112.5 6.0 74 47-128 13-92 (102)
325 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-15 6.3E-20 114.5 4.9 75 47-129 9-93 (107)
326 2dha_A FLJ20171 protein; RRM d 99.6 4.4E-15 1.5E-19 115.2 7.0 73 222-296 22-102 (123)
327 2f3j_A RNA and export factor b 99.6 3.4E-14 1.2E-18 117.3 12.6 78 45-129 84-168 (177)
328 3d2w_A TAR DNA-binding protein 99.6 1.8E-14 6E-19 105.4 9.7 75 46-129 8-85 (89)
329 2pe8_A Splicing factor 45; RRM 99.6 1.8E-14 6.2E-19 108.6 10.0 75 222-297 7-92 (105)
330 2lcw_A RNA-binding protein FUS 99.3 3.1E-16 1.1E-20 120.5 0.0 77 47-130 5-97 (116)
331 2hgm_A HNRPF protein, heteroge 99.6 9.5E-15 3.2E-19 113.6 8.4 73 222-297 41-119 (126)
332 2dit_A HIV TAT specific factor 99.5 2.5E-14 8.5E-19 109.2 10.3 77 221-298 13-101 (112)
333 3q2s_C Cleavage and polyadenyl 99.5 4.8E-15 1.6E-19 127.5 6.8 75 48-129 67-151 (229)
334 1iqt_A AUF1, heterogeneous nuc 99.5 4E-15 1.4E-19 105.0 5.2 67 51-125 1-75 (75)
335 3u1l_A PRE-mRNA-splicing facto 99.5 9.3E-15 3.2E-19 125.6 8.5 77 47-130 132-231 (240)
336 2dnn_A RNA-binding protein 12; 99.5 1.4E-14 4.7E-19 110.0 8.2 78 47-129 14-94 (109)
337 1qm9_A Polypyrimidine tract-bi 99.5 7.8E-15 2.7E-19 122.9 7.2 75 223-299 3-79 (198)
338 3pgw_S U1-70K; protein-RNA com 99.5 1.7E-14 5.7E-19 135.4 10.1 77 221-298 100-181 (437)
339 2dnl_A Cytoplasmic polyadenyla 99.5 1E-14 3.6E-19 111.6 7.0 64 222-286 7-80 (114)
340 1wf0_A TDP-43, TAR DNA-binding 99.5 5.7E-15 2E-19 107.6 5.3 73 47-130 3-80 (88)
341 3nmr_A Cugbp ELAV-like family 99.5 1.4E-14 4.8E-19 118.5 8.2 76 222-297 2-86 (175)
342 2hgn_A Heterogeneous nuclear r 99.5 3E-15 1E-19 118.5 4.0 75 46-128 43-123 (139)
343 2qfj_A FBP-interacting repress 99.5 2.2E-14 7.6E-19 121.5 9.1 77 222-299 27-108 (216)
344 1l3k_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 118.0 9.4 75 222-298 12-91 (196)
345 1fje_B Nucleolin RBD12, protei 99.5 4E-14 1.4E-18 116.1 8.9 75 47-128 97-174 (175)
346 2dha_A FLJ20171 protein; RRM d 99.5 1.8E-14 6.1E-19 111.7 6.3 79 47-129 21-106 (123)
347 2xs2_A Deleted in azoospermia- 99.5 1.1E-14 3.8E-19 109.0 4.8 74 47-129 7-87 (102)
348 3pgw_S U1-70K; protein-RNA com 99.5 9.3E-14 3.2E-18 130.3 11.0 77 46-129 99-183 (437)
349 2hgm_A HNRPF protein, heteroge 99.5 4.1E-14 1.4E-18 110.0 6.9 73 47-127 40-120 (126)
350 2voo_A Lupus LA protein; RNA-b 99.5 9.7E-14 3.3E-18 116.2 9.5 74 223-298 109-186 (193)
351 2j8a_A Histone-lysine N-methyl 99.5 5.7E-14 1.9E-18 107.9 6.9 75 224-299 3-96 (136)
352 3sde_A Paraspeckle component 1 99.5 9.6E-14 3.3E-18 121.7 9.3 76 221-299 20-96 (261)
353 3v4m_A Splicing factor U2AF 65 99.5 1.1E-13 3.6E-18 104.4 8.2 75 221-296 3-94 (105)
354 2yh0_A Splicing factor U2AF 65 99.5 3.3E-13 1.1E-17 112.6 12.0 77 46-129 111-195 (198)
355 3tht_A Alkylated DNA repair pr 99.5 6.7E-14 2.3E-18 126.5 8.0 77 220-298 15-98 (345)
356 2g4b_A Splicing factor U2AF 65 99.5 1.4E-13 4.6E-18 112.4 8.0 71 48-125 93-171 (172)
357 2cjk_A Nuclear polyadenylated 99.4 9.6E-14 3.3E-18 112.7 7.0 73 48-128 86-166 (167)
358 3tht_A Alkylated DNA repair pr 99.4 2.2E-13 7.7E-18 123.1 9.8 78 45-126 14-97 (345)
359 3ue2_A Poly(U)-binding-splicin 99.4 3.8E-13 1.3E-17 103.4 8.9 74 222-296 19-106 (118)
360 2dnl_A Cytoplasmic polyadenyla 99.4 2.7E-13 9.2E-18 103.7 7.8 70 47-125 6-85 (114)
361 2pe8_A Splicing factor 45; RRM 99.4 6.3E-13 2.2E-17 100.1 9.1 77 47-130 6-96 (105)
362 2dit_A HIV TAT specific factor 99.4 5.7E-13 1.9E-17 101.6 8.1 77 47-130 13-104 (112)
363 2voo_A Lupus LA protein; RNA-b 99.4 5.9E-13 2E-17 111.4 8.6 74 48-129 108-188 (193)
364 3s6e_A RNA-binding protein 39; 99.4 1.3E-12 4.3E-17 99.8 9.6 75 222-297 6-91 (114)
365 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.2E-12 1.1E-16 95.2 10.3 74 223-300 10-91 (100)
366 1jmt_A Splicing factor U2AF 35 99.3 4.7E-13 1.6E-17 100.7 3.8 68 228-296 20-103 (104)
367 2j8a_A Histone-lysine N-methyl 99.3 1.4E-12 4.8E-17 100.1 5.5 73 50-129 3-97 (136)
368 3v4m_A Splicing factor U2AF 65 99.3 1.3E-11 4.6E-16 92.8 8.7 76 47-129 3-98 (105)
369 2d9o_A DNAJ (HSP40) homolog, s 99.2 3.8E-11 1.3E-15 89.3 9.1 72 49-129 10-91 (100)
370 1jmt_A Splicing factor U2AF 35 99.2 4.1E-12 1.4E-16 95.5 3.6 65 54-125 20-103 (104)
371 2dnr_A Synaptojanin-1; RRM dom 99.2 2.1E-11 7.3E-16 87.7 6.7 74 219-298 3-85 (91)
372 3ue2_A Poly(U)-binding-splicin 99.2 3.2E-11 1.1E-15 92.6 8.1 76 47-129 18-110 (118)
373 1owx_A Lupus LA protein, SS-B, 99.2 6.4E-11 2.2E-15 90.6 9.4 73 219-294 14-90 (121)
374 3s6e_A RNA-binding protein 39; 99.2 8.9E-11 3.1E-15 89.5 8.0 77 47-130 5-95 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.0 3.2E-10 1.1E-14 81.9 5.5 70 219-294 11-89 (95)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 1.5E-09 5.2E-14 78.0 7.9 73 47-127 5-85 (91)
377 1owx_A Lupus LA protein, SS-B, 98.9 5.6E-09 1.9E-13 79.8 8.9 74 47-127 16-95 (121)
378 3dxb_A Thioredoxin N-terminall 98.7 3.7E-08 1.3E-12 83.8 9.8 73 223-296 124-210 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 2.3E-08 7.8E-13 72.2 5.5 71 47-125 13-92 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.7 8.1E-08 2.8E-12 70.8 8.0 69 223-294 21-94 (117)
381 3dxb_A Thioredoxin N-terminall 98.4 3.8E-07 1.3E-11 77.4 6.6 63 61-130 141-215 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.2 9.1E-06 3.1E-10 59.9 9.0 76 47-125 19-97 (117)
383 1wey_A Calcipressin 1; structu 98.1 5.5E-06 1.9E-10 60.8 5.5 71 224-297 6-82 (104)
384 1wey_A Calcipressin 1; structu 97.8 7.7E-06 2.6E-10 60.0 2.5 70 50-126 6-82 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.8 0.00027 9.3E-09 51.6 9.8 74 47-124 6-80 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.7 0.00015 5.1E-09 52.9 7.7 67 222-294 7-78 (104)
387 1whv_A Poly(A)-specific ribonu 97.7 0.00017 5.8E-09 52.0 7.4 55 223-282 16-70 (100)
388 1uw4_A UPF3X; nonsense mediate 97.6 0.00028 9.5E-09 50.8 8.5 66 224-289 2-73 (91)
389 3ctr_A Poly(A)-specific ribonu 97.6 5.6E-05 1.9E-09 54.7 4.6 55 223-282 6-60 (101)
390 1uw4_A UPF3X; nonsense mediate 97.6 0.00041 1.4E-08 49.9 8.3 72 50-125 2-85 (91)
391 1wwh_A Nucleoporin 35, nucleop 97.2 0.0014 4.7E-08 49.3 7.8 63 223-289 24-86 (119)
392 1whv_A Poly(A)-specific ribonu 97.1 0.0013 4.4E-08 47.5 6.2 54 49-108 16-70 (100)
393 2l08_A Regulator of nonsense t 96.9 0.002 6.8E-08 46.6 5.7 72 49-125 9-93 (97)
394 3ctr_A Poly(A)-specific ribonu 96.8 0.0014 4.6E-08 47.5 4.3 53 50-108 7-60 (101)
395 2l08_A Regulator of nonsense t 96.7 0.0026 9E-08 46.0 5.2 66 224-289 10-81 (97)
396 3pq1_A Poly(A) RNA polymerase; 96.4 0.0019 6.4E-08 60.3 3.4 56 223-280 53-108 (464)
397 1wwh_A Nucleoporin 35, nucleop 95.9 0.04 1.4E-06 41.3 8.1 60 48-113 23-84 (119)
398 3p3d_A Nucleoporin 53; structu 95.6 0.0095 3.2E-07 45.4 3.6 65 223-289 7-89 (132)
399 3pq1_A Poly(A) RNA polymerase; 93.4 0.044 1.5E-06 51.1 3.3 55 46-105 50-107 (464)
400 3d45_A Poly(A)-specific ribonu 92.1 0.26 8.8E-06 46.6 6.7 55 223-282 440-494 (507)
401 3p3d_A Nucleoporin 53; structu 90.5 0.55 1.9E-05 35.7 5.8 70 48-126 6-97 (132)
402 3d45_A Poly(A)-specific ribonu 88.6 1.1 3.8E-05 42.3 7.7 55 49-108 440-494 (507)
403 4eyt_A Telomerase associated p 69.0 26 0.0009 24.4 7.8 57 223-283 12-68 (129)
404 2eqj_A Metal-response element- 65.9 4.5 0.00015 26.6 2.7 21 76-96 30-50 (66)
405 2m0o_A PHD finger protein 1; t 63.3 6 0.00021 26.7 2.9 20 77-96 44-63 (79)
406 2e5p_A Protein PHF1, PHD finge 62.1 5.9 0.0002 26.0 2.7 20 77-96 27-46 (68)
407 2e5q_A PHD finger protein 19; 57.1 4.4 0.00015 26.1 1.4 20 77-96 25-44 (63)
408 2g0c_A ATP-dependent RNA helic 56.4 31 0.0011 22.7 5.8 67 225-297 2-75 (76)
409 4hcz_A PHD finger protein 1; p 54.0 10 0.00034 24.2 2.7 20 77-96 21-40 (58)
410 4eyt_A Telomerase associated p 52.6 56 0.0019 22.7 7.9 57 47-107 10-66 (129)
411 3ts2_A Protein LIN-28 homolog 50.7 3.7 0.00013 31.8 0.3 28 64-95 2-29 (148)
412 4e8u_A Putative uncharacterize 48.6 33 0.0011 27.1 5.5 53 224-276 13-77 (172)
413 1g6p_A Cold shock protein TMCS 34.7 28 0.00095 22.6 2.7 18 78-95 3-20 (66)
414 2kcm_A Cold shock domain famil 32.2 36 0.0012 22.7 2.9 19 78-96 3-21 (74)
415 2k5n_A Putative cold-shock pro 31.8 37 0.0013 22.7 2.9 19 78-96 5-23 (74)
416 3a0j_A Cold shock protein; OB- 30.5 32 0.0011 22.8 2.5 18 78-95 4-21 (73)
417 3fry_A Probable copper-exporti 30.4 1E+02 0.0036 19.4 5.4 60 223-286 6-65 (73)
418 2ki0_A DS119; beta-alpha-beta, 29.9 25 0.00087 19.0 1.4 21 47-72 3-23 (36)
419 1h95_A CSD, Y-box binding prot 29.1 35 0.0012 23.1 2.5 18 78-95 11-28 (79)
420 2f06_A Conserved hypothetical 28.0 1.6E+02 0.0055 21.6 6.5 49 238-287 87-136 (144)
421 1c9o_A CSPB, cold-shock protei 27.3 49 0.0017 21.4 2.9 18 78-95 4-21 (66)
422 3ulj_A LIN28B, DNA-binding pro 27.1 44 0.0015 23.3 2.7 16 252-268 12-27 (90)
423 3cam_A Cold-shock domain famil 26.1 53 0.0018 21.3 2.9 18 78-95 4-21 (67)
424 1fme_A FSD-EY peptide; beta-BE 25.5 55 0.0019 16.7 2.2 15 61-75 13-27 (28)
425 3aqq_A Calcium-regulated heat 24.5 52 0.0018 25.3 2.9 20 77-96 64-83 (147)
426 3i2z_B RNA chaperone, negative 23.9 61 0.0021 21.3 2.9 19 78-96 8-26 (71)
427 2e7g_A Putative ribosome-bindi 22.9 1.3E+02 0.0046 22.2 5.0 37 248-284 44-84 (129)
428 2kpo_A Rossmann 2X2 fold prote 20.9 1.9E+02 0.0065 19.5 4.8 45 61-113 33-77 (110)
429 1ik9_C DNA ligase IV; DNA END 20.4 62 0.0021 18.4 2.0 15 59-73 20-34 (37)
430 2od0_A Hypothetical protein VP 20.0 58 0.002 23.1 2.3 22 235-256 4-25 (105)
No 1
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=7.1e-34 Score=252.93 Aligned_cols=240 Identities=23% Similarity=0.363 Sum_probs=149.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~----~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.++++|||+|||+++|+++|+ ++|+.| |.|+.++ ..||||||+|.+.++|++|++.|||..|. |
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~----G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 79 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF----GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY---D 79 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc----CCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC---C
Confidence 568999999999999999987 677777 9986653 24699999999999999999999999998 8
Q ss_pred CeEEEEEccccchhccccccCCccccccccccCCCCCCC----------------CCCCCCCCCCCC------CC---CC
Q 021857 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTH----------------TGYSAPSPFHAP------PA---PV 172 (306)
Q Consensus 118 ~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~----------------~~~~~~~~~~~~------~~---~~ 172 (306)
+.|+|.|++......... .+...++.+.......... ............ +. .+
T Consensus 80 ~~l~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKM--KGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred cEEEEEEeccCcchhhhh--cCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 999999997665421111 1111111110000000000 000000000000 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCce
Q 021857 173 WGPHGYMAPPPPPYDPYGGYGVPP-VQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFK 251 (306)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~ 251 (306)
.+...++.+ +...+..+..... ...........+...+........+++++|||+|||.++|+++|+++|+.||.|+
T Consensus 158 ~g~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~ 235 (282)
T 3pgw_A 158 PGQPPYMPP--PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 235 (282)
T ss_pred CCCCCCCCC--CCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE
Confidence 000011100 0000000000000 0000011111122222333344566789999999999999999999999999999
Q ss_pred EEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 252 QMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 252 ~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
+|+++. .++|||||+|.+.++|.+|++.|||+.|.++..|+| |+|.
T Consensus 236 ~v~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 236 EVRLVP-GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred EEEEec-CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 999996 445899999999999999999999999995668999 9984
No 2
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.8e-33 Score=242.09 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=142.7
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 47 DEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 47 ~~~~~LfV~nLp~-~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
+++++|||+|||+ ++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..+. |+.|+|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~----G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH---GKPIRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHH----TCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS---SSBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEE
Confidence 4689999999999 99999999999999 9986553 33799999999999999999999999998 899999
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
.|++............. ....+. .. .... ..+..
T Consensus 105 ~~a~~~~~~~~~~~~~~--~~~~~~-----------~~------~~~~-----~~~~~---------------------- 138 (229)
T 2adc_A 105 TLSKHQNVQLPREGQED--QGLTKD-----------YG------NSPL-----HRFKK---------------------- 138 (229)
T ss_dssp ECCSCCCCCCCCSSSST--TTTEEE-----------CT------TCSS-----CCCCS----------------------
T ss_pred EEecCccccCccccccc--cccccc-----------cc------cCcc-----cccCC----------------------
Confidence 99975543111000000 000000 00 0000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCC-CceEEEEEecCCcceEEEEECCHHHHHHHHHHh
Q 021857 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (306)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G-~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~l 281 (306)
+ .........+++++|||+|||.++++++|+++|+.|| .|.+|+++++ ++|||||+|.+.++|.+|++.|
T Consensus 139 -----~---~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l 209 (229)
T 2adc_A 139 -----P---GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDL 209 (229)
T ss_dssp -----T---TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHH
T ss_pred -----c---cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHH
Confidence 0 0000011234579999999999999999999999999 9999999853 4589999999999999999999
Q ss_pred CCceeCCCCceeE-EeeCC
Q 021857 282 QGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 282 nG~~i~~~~~~~i-~~k~~ 299 (306)
||..|.++..++| |++.+
T Consensus 210 ~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 210 HNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCBSSSSCBCEEEECSSC
T ss_pred CCCccCCCCeEEEEEecCC
Confidence 9999985668999 99876
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.6e-33 Score=240.92 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=135.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.+||||+|||+++||++|+++|+.| |.|+.++ ..+|||||+|.+.++|++|++.|++..+. |+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~---g~ 85 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPA----GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK---GK 85 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhh----CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC---Cc
Confidence 467899999999999999999999999 9885542 23599999999999999999999999998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|++.++........
T Consensus 86 ~i~~~~~~~~~~~~~----------------------------------------------------------------- 100 (213)
T 4f02_A 86 PVRIMWSQRDPSLRK----------------------------------------------------------------- 100 (213)
T ss_dssp ECEEEECCCCTHHHH-----------------------------------------------------------------
T ss_pred ccccccccccccccc-----------------------------------------------------------------
Confidence 999998854432211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC--cceEEEEECCHHHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASS 276 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~--~g~aFV~F~~~~~A~~ 276 (306)
....+|||+|||.++|+++|+++|+.||.|++++|+.+.+ +|||||+|.+.++|.+
T Consensus 101 ----------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 101 ----------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp ----------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHH
T ss_pred ----------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHH
Confidence 0146799999999999999999999999999999997654 4999999999999999
Q ss_pred HHHHhCCceeCCCCceeE-EeeC
Q 021857 277 VHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 277 Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
||+.|||..|.| .+|+| |++.
T Consensus 159 Ai~~lng~~~~g-~~i~V~~a~~ 180 (213)
T 4f02_A 159 AIEKMNGMLLND-RKVFVGRFKS 180 (213)
T ss_dssp HHHHHTTCEETT-EECEEEECCC
T ss_pred HHHHhCCCEECC-EEEEEEEcCC
Confidence 999999999995 48999 8864
No 4
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2e-33 Score=238.94 Aligned_cols=185 Identities=12% Similarity=0.156 Sum_probs=135.1
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 47 DEVRTIFITGLP-DDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 47 ~~~~~LfV~nLp-~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
.++++|||+||+ +++|+++|+++|+.| |.|+.++ ..||||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~----G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~---g~~l~v 74 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLY----GNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF---GQKMNV 74 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTT----SCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CceEEE
Confidence 467899999999 899999999999999 9996653 35799999999999999999999999999 899999
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
.|++......+.. .+..... ... ..+..... ..+.
T Consensus 75 ~~s~~~~~~p~~~------~~~~~~~--------~~~---~~~~~~~~-----~r~~----------------------- 109 (205)
T 3tyt_A 75 CVSKQPAIMPGQS------YGLEDGS--------CSY---KDFSESRN-----NRFS----------------------- 109 (205)
T ss_dssp EECSCSCCCCCSC------CBCTTSC--------BSE---EECTTCTT-----CSCS-----------------------
T ss_pred EEccCCccCCCcc------cccccCC--------ccc---cccCCCcc-----cccc-----------------------
Confidence 9996554211100 0000000 000 00000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCc--eEEEEEecC--CcceEEEEECCHHHHHHHH
Q 021857 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGF--KQMKVLRQE--RHTVCFIEFEDVNSASSVH 278 (306)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i--~~vkl~~~~--~~g~aFV~F~~~~~A~~Ai 278 (306)
.+. ........+++++|||+|||+++|+++|+++|+.||.| .+++++.+. ++|+|||+|++.++|.+||
T Consensus 110 ----~~~---~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 110 ----TPE---QAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp ----SHH---HHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHH
T ss_pred ----Ccc---cccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHH
Confidence 000 00001123468899999999999999999999999998 899998653 2499999999999999999
Q ss_pred HHhCCceeCCCC
Q 021857 279 HNLQGAVIPSSG 290 (306)
Q Consensus 279 ~~lnG~~i~~~~ 290 (306)
..|||+.|.+.+
T Consensus 183 ~~lng~~~~g~~ 194 (205)
T 3tyt_A 183 GFLNHYQMKNPN 194 (205)
T ss_dssp HHHTTCEECCSS
T ss_pred HHhCCCCccCCC
Confidence 999999998764
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.8e-32 Score=224.93 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=132.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee----------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~----------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..+....+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY----GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 57899999999999999999999999 8884442 246999999999999999999999998864446
Q ss_pred CeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (306)
Q Consensus 118 ~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (306)
+.+.+.++......
T Consensus 78 ~~~~~~~~~~~~~~------------------------------------------------------------------ 91 (175)
T 3nmr_A 78 HPIQMKPADSEKNN------------------------------------------------------------------ 91 (175)
T ss_dssp SCCEEEECGGGCCS------------------------------------------------------------------
T ss_pred cceEEccccccccc------------------------------------------------------------------
Confidence 77777776332110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHH
Q 021857 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSA 274 (306)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A 274 (306)
..+.++|||+|||.++|+++|+++|+.||.|.+++++.+.. +|||||+|.+.++|
T Consensus 92 ----------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A 149 (175)
T 3nmr_A 92 ----------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMA 149 (175)
T ss_dssp ----------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred ----------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHH
Confidence 01257899999999999999999999999999999997543 38999999999999
Q ss_pred HHHHHHhCCceeCCC--CceeE-Ee
Q 021857 275 SSVHHNLQGAVIPSS--GSVGM-RI 296 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~~--~~~~i-~~ 296 (306)
.+|++.|||..+.++ .+++| |+
T Consensus 150 ~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 150 QTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCcccCCCCCCeEEEec
Confidence 999999999988763 68898 86
No 6
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=3.7e-32 Score=229.44 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=141.2
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 49 VRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 49 ~~~LfV~nLp~-~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
+++|||+|||+ ++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..+. |+.|+|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH---GKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT----CCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCS---SCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeec---CeEEEEEE
Confidence 68999999999 99999999999999 8885543 33699999999999999999999999998 89999999
Q ss_pred ccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (306)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
++............. ....+. .. ..... .+..
T Consensus 76 a~~~~~~~~~~~~~~--~~~~~~-----------~~------~~~~~-----r~~~------------------------ 107 (198)
T 1qm9_A 76 SKHQNVQLPREGQED--QGLTKD-----------YG------NSPLH-----RFKK------------------------ 107 (198)
T ss_dssp CCCCSCCCSSSSSSS--SSCEEE-----------SS------CCCTT-----SSSS------------------------
T ss_pred ecCCCcCCCCcCCcc--cccccc-----------cc------CCchh-----hccC------------------------
Confidence 976543211000000 000000 00 00000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCC-CceEEEEEecCCcceEEEEECCHHHHHHHHHHhCC
Q 021857 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (306)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G-~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG 283 (306)
+. ........+++++|||+|||..+++++|+++|+.|| .|.+++++++. +|+|||+|.+.++|.+|+..|||
T Consensus 108 ---~~---~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g~afV~f~~~~~A~~A~~~l~g 180 (198)
T 1qm9_A 108 ---PG---SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RKMALIQMGSVEEAVQALIDLHN 180 (198)
T ss_dssp ---CC---CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SSCEEEECSSHHHHHHHHHHHTS
T ss_pred ---cc---ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhcC
Confidence 00 000011234689999999999999999999999999 99999998643 58999999999999999999999
Q ss_pred ceeCCCCceeE-EeeCC
Q 021857 284 AVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 284 ~~i~~~~~~~i-~~k~~ 299 (306)
..|.++..++| |++.+
T Consensus 181 ~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 181 HDLGENHHLRVSFSKST 197 (198)
T ss_dssp SCCSSCCSCCEEEECCC
T ss_pred CccCCCCeEEEEeeccc
Confidence 99985668999 99876
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=222.59 Aligned_cols=153 Identities=17% Similarity=0.294 Sum_probs=133.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
|+|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..+. |+.|+|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG----GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE---NNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG----SCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc----CCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC---CCeeEE
Confidence 699999999999999999999999 8885442 23699999999999999999999999998 899999
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
.++......
T Consensus 74 ~~~~~~~~~----------------------------------------------------------------------- 82 (166)
T 3md3_A 74 NWAFQSQQS----------------------------------------------------------------------- 82 (166)
T ss_dssp EECCCCCCC-----------------------------------------------------------------------
T ss_pred EEcCCCCCC-----------------------------------------------------------------------
Confidence 998433210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHH
Q 021857 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVH 278 (306)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai 278 (306)
...+.++|||+|||.++|+++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|+
T Consensus 83 ----------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 83 ----------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp ----------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred ----------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 011367899999999999999999999999999999986532 389999999999999999
Q ss_pred HHhCCceeCCCCceeE-Eee
Q 021857 279 HNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 279 ~~lnG~~i~~~~~~~i-~~k 297 (306)
..|||..|. +.+++| |++
T Consensus 147 ~~l~g~~~~-g~~i~v~~a~ 165 (166)
T 3md3_A 147 DSMQGQDLN-GRPLRINWAA 165 (166)
T ss_dssp HHHTTCEET-TEECEEEESC
T ss_pred HHhCCCccC-CcEEEEEecC
Confidence 999999998 558999 986
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.6e-32 Score=221.39 Aligned_cols=153 Identities=18% Similarity=0.283 Sum_probs=133.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------C--CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
++++|||+|||.++|+++|+++|+.| |.|..++ + .+|||||+|.+.++|++|++.|+|..+. |+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~ 74 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAI----GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR---NKR 74 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC---CcE
Confidence 57899999999999999999999999 9885552 1 3599999999999999999999999998 899
Q ss_pred EEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 120 i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
|+|.|++....
T Consensus 75 l~v~~~~~~~~--------------------------------------------------------------------- 85 (168)
T 1b7f_A 75 LKVSYARPGGE--------------------------------------------------------------------- 85 (168)
T ss_dssp CEEEECCCCSS---------------------------------------------------------------------
T ss_pred EEEEecCCCcc---------------------------------------------------------------------
Confidence 99999843321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~ 275 (306)
..+.++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.
T Consensus 86 --------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 86 --------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp --------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred --------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 01257899999999999999999999999999999987542 389999999999999
Q ss_pred HHHHHhCCceeCC-CCceeE-Ee
Q 021857 276 SVHHNLQGAVIPS-SGSVGM-RI 296 (306)
Q Consensus 276 ~Ai~~lnG~~i~~-~~~~~i-~~ 296 (306)
+|+..|||..|.| +.+++| |+
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999975 357888 85
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6e-32 Score=221.13 Aligned_cols=152 Identities=17% Similarity=0.272 Sum_probs=132.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..+. |+.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l 74 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI----GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ---TKTI 74 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC---CceE
Confidence 5899999999999999999999999 8885442 12499999999999999999999999998 8999
Q ss_pred EEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (306)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (306)
+|.++.......
T Consensus 75 ~v~~~~~~~~~~-------------------------------------------------------------------- 86 (167)
T 1fxl_A 75 KVSYARPSSASI-------------------------------------------------------------------- 86 (167)
T ss_dssp EEEECCCCCGGG--------------------------------------------------------------------
T ss_pred EEEecCCCcccC--------------------------------------------------------------------
Confidence 999985432110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHH
Q 021857 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASS 276 (306)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~ 276 (306)
..++|||+|||..+++++|+++|+.||.|.+++++.+. .+|||||+|.+.++|.+
T Consensus 87 ---------------------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 87 ---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp ---------------------TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ---------------------CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 25679999999999999999999999999999998654 14999999999999999
Q ss_pred HHHHhCCceeCCC-CceeE-Ee
Q 021857 277 VHHNLQGAVIPSS-GSVGM-RI 296 (306)
Q Consensus 277 Ai~~lnG~~i~~~-~~~~i-~~ 296 (306)
|++.|||..|.|+ .+++| |+
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 9999999999976 36788 85
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=6.4e-32 Score=222.47 Aligned_cols=155 Identities=17% Similarity=0.336 Sum_probs=132.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcC-------cEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g-------~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
+.++|||+|||+++|+++|+++|+.|....| .|+.+ ..++|||||+|.+.++|++|+ .|+|..+. |+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~---g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---GQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEET---TE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEec---Cc
Confidence 5789999999999999999999999943334 55444 456899999999999999999 79999998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|+|.+++....
T Consensus 79 ~i~v~~~~~~~~-------------------------------------------------------------------- 90 (172)
T 2g4b_A 79 SLKIRRPHDYQP-------------------------------------------------------------------- 90 (172)
T ss_dssp ECEEECCSSCCC--------------------------------------------------------------------
T ss_pred eeeecCCcccCC--------------------------------------------------------------------
Confidence 999987632210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A 274 (306)
....++|||+|||.++|+++|+++|+.||.|.+++++.+.. +|||||+|.+.++|
T Consensus 91 ---------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 91 ---------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp ---------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred ---------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 00156799999999999999999999999999999987532 38999999999999
Q ss_pred HHHHHHhCCceeCCCCceeE-Ee
Q 021857 275 SSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.+|++.|||..|.| .+++| |+
T Consensus 150 ~~A~~~l~g~~~~g-~~l~V~~A 171 (172)
T 2g4b_A 150 DQAIAGLNGMQLGD-KKLLVQRA 171 (172)
T ss_dssp HHHHHHHTTCEETT-EECEEEEC
T ss_pred HHHHHHcCCCEECC-eEEEEEeC
Confidence 99999999999994 57999 86
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1.4e-31 Score=225.39 Aligned_cols=178 Identities=17% Similarity=0.278 Sum_probs=137.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcC-------cEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g-------~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
..++|||+|||+++|+++|+++|+.|....| .|+.+ ..++|||||+|.+.++|++|+ .|||..|. |+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~---g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---GQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEET---TE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc---Cc
Confidence 4789999999999999999999999943233 45444 456899999999999999999 79999998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|+|.+++........ . .. .... .
T Consensus 79 ~i~v~~~~~~~~~~~~----------~-----~~----~~~~-------~------------------------------ 102 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGM----------S-----EN----PSVY-------V------------------------------ 102 (198)
T ss_dssp EEEEECCCCCCCCCCS----------S-----SC----SSCC-------C------------------------------
T ss_pred eEEEeCCCCCCCCCCC----------c-----CC----CcCC-------C------------------------------
Confidence 9999988544221100 0 00 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A 274 (306)
+ .........+.++|||+|||.++++++|+++|+.||.|.++++..+.. +|||||+|.+.++|
T Consensus 103 ---------~----~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a 169 (198)
T 2yh0_A 103 ---------P----GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 169 (198)
T ss_dssp ---------T----TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHH
T ss_pred ---------C----CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHH
Confidence 0 000001123478999999999999999999999999999999997531 49999999999999
Q ss_pred HHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 275 SSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.+|++.|||..|.| ..++| |++..
T Consensus 170 ~~A~~~l~g~~~~g-~~l~v~~a~~~ 194 (198)
T 2yh0_A 170 DQAIAGLNGMQLGD-KKLLVQRASVG 194 (198)
T ss_dssp HHHHHHHTTCEETT-EECEEEESCCC
T ss_pred HHHHHHcCCCEECC-EEEEEEECCCC
Confidence 99999999999984 57999 98765
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=4.2e-31 Score=225.44 Aligned_cols=168 Identities=11% Similarity=0.217 Sum_probs=137.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..|. |+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~ 98 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPF----GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG---GR 98 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----C
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC---Ce
Confidence 347899999999999999999999999 9885542 24799999999999999999999999998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|+|.++.......... ....
T Consensus 99 ~l~v~~~~~~~~~~~~~-------~~~~---------------------------------------------------- 119 (216)
T 2qfj_A 99 NIKVGRPSNIGQAQPII-------DQLA---------------------------------------------------- 119 (216)
T ss_dssp CCEEECCSCCGGGHHHH-------HHHH----------------------------------------------------
T ss_pred eEEEecCCCccccchhh-------hhhh----------------------------------------------------
Confidence 99998875543211100 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A 274 (306)
......++|||+|||.++|+++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|
T Consensus 120 -------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 120 -------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp -------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 0001367899999999999999999999999999999997532 49999999999999
Q ss_pred HHHHHHhCCceeCCCCceeE-EeeCCc
Q 021857 275 SSVHHNLQGAVIPSSGSVGM-RIQYPF 300 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~~~~~~i-~~k~~~ 300 (306)
.+|+..|||..|.|. .++| |++.+-
T Consensus 181 ~~A~~~l~g~~~~g~-~i~V~~a~~~~ 206 (216)
T 2qfj_A 181 QDAVSSMNLFDLGGQ-YLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHTTCBCSSS-BCEEEECSSCS
T ss_pred HHHHHHccCCEeCCc-EEEEEEecCCC
Confidence 999999999999854 7999 998764
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.4e-31 Score=219.87 Aligned_cols=160 Identities=21% Similarity=0.218 Sum_probs=131.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
..+.++|||+|||+++|+++|+++|+.|+...+.+ ... ...+|||||+|.+.++|++|++ |+|..+. |+.|+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l~v 85 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEIKL 85 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEET---TEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeC---CeEEEE
Confidence 35689999999999999999999999995444422 222 3467999999999999999995 9999999 899999
Q ss_pred EEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (306)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (306)
.+++.+....
T Consensus 86 ~~~~~~~~~~---------------------------------------------------------------------- 95 (175)
T 1fje_B 86 EKPKGRDSKK---------------------------------------------------------------------- 95 (175)
T ss_dssp ECCCCSSCST----------------------------------------------------------------------
T ss_pred ecCCCccccc----------------------------------------------------------------------
Confidence 9985432100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhC
Q 021857 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
..+.++|||+|||.++|+++|+++|+.||.|..+ ......+|||||+|.+.++|.+|+..||
T Consensus 96 -----------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 96 -----------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp -----------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred -----------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 0136789999999999999999999999988777 2222335999999999999999999999
Q ss_pred CceeCCCCceeE-EeeC
Q 021857 283 GAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 283 G~~i~~~~~~~i-~~k~ 298 (306)
|..|.| ..++| |++.
T Consensus 158 g~~~~g-~~i~v~~a~~ 173 (175)
T 1fje_B 158 GAEIDG-RSVSLYYTGE 173 (175)
T ss_dssp EEEETT-EEEEEEECSS
T ss_pred CCEECC-eEEEEEecCC
Confidence 999995 57999 9864
No 14
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.3e-30 Score=219.01 Aligned_cols=159 Identities=17% Similarity=0.312 Sum_probs=130.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|+.++ ..+|||||+|.+.++|++|++. ++..+. |+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~---g~ 82 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQW----GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD---GR 82 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC---CE
Confidence 468999999999999999999999999 8885442 1369999999999999999985 888998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|.|.++.........
T Consensus 83 ~l~v~~~~~~~~~~~~---------------------------------------------------------------- 98 (196)
T 1l3k_A 83 VVEPKRAVSREDSQRP---------------------------------------------------------------- 98 (196)
T ss_dssp ECEEEECCC-----------------------------------------------------------------------
T ss_pred EeeeecccCccccccc----------------------------------------------------------------
Confidence 9999998544321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A 274 (306)
....+.++|||+|||.++|+++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|
T Consensus 99 -------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 99 -------------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp -----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -------------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 0011358899999999999999999999999999999996532 49999999999999
Q ss_pred HHHHHHhCCceeCCCCceeE-EeeC
Q 021857 275 SSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
.+|+.. ||..|.|. .++| |+..
T Consensus 160 ~~A~~~-~~~~~~G~-~i~v~~a~~ 182 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNGH-NCEVRKALS 182 (196)
T ss_dssp HHHHHC-SCCEETTE-ECEEEECC-
T ss_pred HHHHHh-CCcEECCE-EEEEEecCC
Confidence 999987 89999954 7999 7653
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.1e-30 Score=213.91 Aligned_cols=151 Identities=17% Similarity=0.283 Sum_probs=129.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++. +..+. |+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~---g~~ 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY----GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD---GKV 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT----CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET---TEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC---CeE
Confidence 47899999999999999999999999 9986553 2369999999999999999994 56777 899
Q ss_pred EEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 120 i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
|.|.++.......
T Consensus 73 i~v~~~~~~~~~~------------------------------------------------------------------- 85 (167)
T 2cjk_A 73 IDPKRAIPRDEQD------------------------------------------------------------------- 85 (167)
T ss_dssp CCCEECCCHHHHH-------------------------------------------------------------------
T ss_pred cccccccchhhcc-------------------------------------------------------------------
Confidence 9888875433211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSAS 275 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~ 275 (306)
+.++|||+|||.++|+++|+++|+.||.|.+++++.+. .+|||||+|.+.++|.
T Consensus 86 ----------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 86 ----------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp ----------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred ----------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 14679999999999999999999999999999998653 2489999999999999
Q ss_pred HHHHHhCCceeCCCCceeE-EeeC
Q 021857 276 SVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 276 ~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
+|++ |||..|.|. +++| |++.
T Consensus 144 ~A~~-~~~~~~~g~-~i~V~~a~p 165 (167)
T 2cjk_A 144 RVCQ-NKFIDFKDR-KIEIKRAEP 165 (167)
T ss_dssp HHHH-CSEECSSSS-CEEEEECCC
T ss_pred HHHh-CCCEEeCCe-EEEEeecCC
Confidence 9998 899999954 7999 9864
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=4.7e-29 Score=219.68 Aligned_cols=149 Identities=21% Similarity=0.318 Sum_probs=130.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
.+.++|||+|||+++|+++|+++|+.| |.| +.+..++|||||+|.+.++|.+|+..|+|..+. |+.|+|.|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERY----GEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK---SRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGG----CCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEEC---CceeEeee
Confidence 567899999999999999999999999 888 444567899999999999999999999999998 89999998
Q ss_pred ccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (306)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
+..
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 721
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHh
Q 021857 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNL 281 (306)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~l 281 (306)
.++|||+|||..+|+++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+|+..|
T Consensus 96 ------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 ------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp ------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 35799999999999999999999999999999997643 399999999999999999999
Q ss_pred CC-ceeCC--CCceeE-Eee
Q 021857 282 QG-AVIPS--SGSVGM-RIQ 297 (306)
Q Consensus 282 nG-~~i~~--~~~~~i-~~k 297 (306)
|| ..+.+ +.++.| +++
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp HHSCEESSSSCCBCEEEECC
T ss_pred cCCeEEecCCCceEEEeecc
Confidence 55 44431 346777 765
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=6.7e-29 Score=220.98 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=135.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
..++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~ 166 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPF----GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG---PRT 166 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhc----CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---CcE
Confidence 46899999999999999999999999 8874432 13699999999999999999999999998 899
Q ss_pred EEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 120 i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
|.|.|+.......
T Consensus 167 i~v~~a~~~~~~~------------------------------------------------------------------- 179 (284)
T 3smz_A 167 LYVHWTDAGQLTP------------------------------------------------------------------- 179 (284)
T ss_dssp CEEEECCGGGCCT-------------------------------------------------------------------
T ss_pred EEEEECCCCCCCc-------------------------------------------------------------------
Confidence 9999985432100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCC-CHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESI-NEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSAS 275 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~-t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~ 275 (306)
...+.++|||+|||.++ |+++|+++|+.||.|.+++|+.+.. +|+|||+|.+.++|.
T Consensus 180 -------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 180 -------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp -------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHH
T ss_pred -------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHH
Confidence 01136789999999995 9999999999999999999987533 399999999999999
Q ss_pred HHHHHhCCceeCCCCceeE-EeeCCc
Q 021857 276 SVHHNLQGAVIPSSGSVGM-RIQYPF 300 (306)
Q Consensus 276 ~Ai~~lnG~~i~~~~~~~i-~~k~~~ 300 (306)
+|+..|||..|.| .+++| |++..-
T Consensus 241 ~A~~~l~g~~~~g-~~l~v~~a~~~~ 265 (284)
T 3smz_A 241 EAQQQADGLSLGG-SHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHTTCEETT-EECEEEECCSSS
T ss_pred HHHHHhCCCccCC-eEEEEEEecCCC
Confidence 9999999999984 58999 987653
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=5.4e-29 Score=222.44 Aligned_cols=160 Identities=15% Similarity=0.268 Sum_probs=134.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcC-cEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-SQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g-~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
..++|||+|||+++|+++|+++|+.| | .|..++ ..+|||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDI----NVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE---GYT 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHT----TCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcE
Confidence 57899999999999999999999999 8 764432 24799999999999999999999999998 899
Q ss_pred EEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (306)
Q Consensus 120 i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (306)
|.|.|+.......+.
T Consensus 189 l~v~~a~~~~~~~~~----------------------------------------------------------------- 203 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRT----------------------------------------------------------------- 203 (292)
T ss_dssp CEEEECCCC-----------------------------------------------------------------------
T ss_pred EEEEECCCCcccccc-----------------------------------------------------------------
Confidence 999998654322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCC-CCHHHHHHhhccCCCceEEEEEecCC-----cceEEEEECCHHH
Q 021857 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNS 273 (306)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~-~t~e~L~~~F~~~G~i~~vkl~~~~~-----~g~aFV~F~~~~~ 273 (306)
.....+.++|||+|||.+ +|+++|+++|+.||.|.+|+++.+.. +|||||+|.+.++
T Consensus 204 -----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~ 266 (292)
T 2ghp_A 204 -----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 266 (292)
T ss_dssp --------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHH
T ss_pred -----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHH
Confidence 001123688999999999 99999999999999999999986543 4999999999999
Q ss_pred HHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 274 ASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 274 A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
|.+|+ .|||..|.| .+++| |++.
T Consensus 267 A~~A~-~l~g~~~~g-~~i~V~~a~~ 290 (292)
T 2ghp_A 267 AERAL-QMNRSLLGN-REISVSLADK 290 (292)
T ss_dssp HHHHG-GGTTEEETT-EEEEEEECCC
T ss_pred HHHHH-HhcCCEECC-cEEEEEEecC
Confidence 99999 999999994 58999 9875
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=2.5e-28 Score=217.31 Aligned_cols=149 Identities=21% Similarity=0.276 Sum_probs=132.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--eeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
.+.++|||+|||+++|+++|+++|+.| | |+. +...+|||||+|.+.++|++|++.|+|..+. |+.|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~i~v~~ 91 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDY----E-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR---ERELSVQL 91 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----C-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC---CeEEEEEe
Confidence 357899999999999999999999999 8 644 4567899999999999999999999999998 89999987
Q ss_pred ccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (306)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
+.
T Consensus 92 ~~------------------------------------------------------------------------------ 93 (284)
T 3smz_A 92 QP------------------------------------------------------------------------------ 93 (284)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 41
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHH
Q 021857 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHN 280 (306)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~ 280 (306)
..++|||+|||.++|+++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|+..
T Consensus 94 -----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 -----------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp -----------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred -----------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHH
Confidence 146799999999999999999999999999999986442 38999999999999999999
Q ss_pred hCCceeCCCCceeE-EeeCC
Q 021857 281 LQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 281 lnG~~i~~~~~~~i-~~k~~ 299 (306)
|||..|.| ..++| |++..
T Consensus 157 l~~~~~~g-~~i~v~~a~~~ 175 (284)
T 3smz_A 157 LLGKPLGP-RTLYVHWTDAG 175 (284)
T ss_dssp HTTCEETT-EECEEEECCGG
T ss_pred hCCCEeCC-cEEEEEECCCC
Confidence 99999984 57999 87653
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.5e-28 Score=218.08 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=127.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
...+.++|||+|||+++|+++|+++|+.| |.|..++ +++|||||+|.+.++|++|++ |+|..+. |+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~---g~ 108 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHC----GPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVG---QN 108 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGG----SCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEET---TE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeC---Cc
Confidence 34578999999999999999999999999 9885542 247999999999999999996 9999998 89
Q ss_pred eEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021857 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (306)
Q Consensus 119 ~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.|.|.++
T Consensus 109 ~i~v~~~------------------------------------------------------------------------- 115 (292)
T 2ghp_A 109 EIIVSHL------------------------------------------------------------------------- 115 (292)
T ss_dssp ECEEEEC-------------------------------------------------------------------------
T ss_pred EEEEEEC-------------------------------------------------------------------------
Confidence 9999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCC-CceEEEEEecC---CcceEEEEECCHHHH
Q 021857 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQE---RHTVCFIEFEDVNSA 274 (306)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G-~i~~vkl~~~~---~~g~aFV~F~~~~~A 274 (306)
..++|||+|||.++++++|+++|+.|| .|.+|+++.+. .+|||||+|.+.++|
T Consensus 116 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a 172 (292)
T 2ghp_A 116 -----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDA 172 (292)
T ss_dssp -----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHH
T ss_pred -----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHH
Confidence 146799999999999999999999999 99999998644 349999999999999
Q ss_pred HHHHHHhCCceeCCCCceeE-EeeC
Q 021857 275 SSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 275 ~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
.+|+..|||..|.| ..++| |++.
T Consensus 173 ~~A~~~l~g~~~~g-~~l~v~~a~~ 196 (292)
T 2ghp_A 173 RYCVEKLNGLKIEG-YTLVTKVSNP 196 (292)
T ss_dssp HHHHHHHTTCEETT-EECEEEECCC
T ss_pred HHHHHHhCCCEeCC-cEEEEEECCC
Confidence 99999999999985 57999 8753
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=4.1e-23 Score=166.60 Aligned_cols=136 Identities=21% Similarity=0.177 Sum_probs=108.1
Q ss_pred CCcCeEEEEeCCHHHHHHHHHHh-cCceeCCCCCCeEEEEEccccchhccccccCCccccccccccCCCCCCCCCCCCCC
Q 021857 85 GEKPMGFALFSTAQLAVAAKDAL-QEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPS 163 (306)
Q Consensus 85 ~~kg~aFV~F~~~~~A~~Al~~l-~g~~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 163 (306)
..+|+++|+|.+.++|++|++.| ||..++ | .|++.++..+....... . . .
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~---G-~~~~~~a~~~~~~~~~~----------------~----~--~--- 61 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVD---G-EWTYDDATKTFTVTEGS----------------H----H--H--- 61 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCC---C-EEEEETTTTEEEEECSS----------------S----S--C---
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCC---C-ceecccccCcccccccc----------------c----c--c---
Confidence 45799999999999999999999 999999 8 99999875443211100 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHh
Q 021857 164 PFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGL 243 (306)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~NLp~~~t~e~L~~~ 243 (306)
..........+.++|||+|||+++|+++|+++
T Consensus 62 ------------------------------------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~ 93 (150)
T 2i2y_A 62 ------------------------------------------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERA 93 (150)
T ss_dssp ------------------------------------------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHH
T ss_pred ------------------------------------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 00000011224789999999999999999999
Q ss_pred hccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 244 FSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 244 F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
|+.||.|.+|+++.+ .+|||||+|.+.++|.+|++.|||..|.| .+++| |++.+
T Consensus 94 F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~ 148 (150)
T 2i2y_A 94 FGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG-CRVRVELSNGE 148 (150)
T ss_dssp HHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS-SCCEEEECCCC
T ss_pred HHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEcCCC
Confidence 999999999999965 45999999999999999999999999984 58999 98765
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=1.3e-21 Score=158.95 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+||+.|||..|.| .+++| |+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-RELRVQMA 147 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS-SEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEEC
Confidence 46899999999999999999999999999999998653 24999999999999999999999999985 58999 98
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.2e-21 Score=148.48 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=66.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
...+|||+|||+++|+++|+++|+.| |.|+.++ ++||||||+|.+.++|++|++.|+|..|. |+.|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~---g~~i~ 76 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN---DRKVF 76 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhcc----CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 35789999999999999999999999 9885442 24799999999999999999999999998 89999
Q ss_pred EEEccccc
Q 021857 122 TEMAKKNL 129 (306)
Q Consensus 122 V~~a~~~~ 129 (306)
|.+++.+.
T Consensus 77 V~~a~~~~ 84 (115)
T 4f25_A 77 VGRFKSRK 84 (115)
T ss_dssp EEESSCCC
T ss_pred EEECCCcc
Confidence 99986543
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=134.75 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.+++|||+|||.++|+++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| .+|+| |+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-r~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-KTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEe
Confidence 368899999999999999999999999999999996542 3899999999999999999999999995 58999 99
Q ss_pred e
Q 021857 297 Q 297 (306)
Q Consensus 297 k 297 (306)
|
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 6
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=134.80 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCce--eCCCCceeE-E
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAV--IPSSGSVGM-R 295 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~--i~~~~~~~i-~ 295 (306)
..+|+++|||+|||.++|+++|+++|++||.|.+|++++ .+|||||+|++.++|.+|++.|||.. |. +.+++| |
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~-Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIA-GHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEET-TEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeC-CcEEEEEe
Confidence 455799999999999999999999999999999999985 34899999999999999999999986 55 558999 9
Q ss_pred eeC
Q 021857 296 IQY 298 (306)
Q Consensus 296 ~k~ 298 (306)
|+.
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 986
No 26
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=129.94 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=68.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHh--CCceeCCCCceeE-E
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL--QGAVIPSSGSVGM-R 295 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~l--nG~~i~~~~~~~i-~ 295 (306)
..+++++|||+|||+++++++|+++|+.||.|.+|+++.+ +|||||+|++.++|.+|++.| +|..|. +.+|+| |
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~-Gr~l~V~~ 87 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR-NQPIYIQY 87 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET-TEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC-CcEEEEEE
Confidence 4456899999999999999999999999999999999853 589999999999999999987 467788 458999 9
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 88 a~~~ 91 (101)
T 2cq1_A 88 SNHK 91 (101)
T ss_dssp CSCS
T ss_pred cCcc
Confidence 9853
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=131.62 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
..+++|||+|||+++|+++|+++|+.| |.|..++ ..||||||+|.+.++|++|++.|||..|. |+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---gr 89 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSI----GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ---SK 89 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC---CE
Confidence 457899999999999999999999999 9885442 23599999999999999999999999998 89
Q ss_pred eEEEEEccc
Q 021857 119 VLHTEMAKK 127 (306)
Q Consensus 119 ~i~V~~a~~ 127 (306)
.|+|+||++
T Consensus 90 ~l~V~~AkP 98 (99)
T 4fxv_A 90 TIKVSYARP 98 (99)
T ss_dssp ECEEEECCB
T ss_pred EEEEEEeeC
Confidence 999999965
No 28
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=133.11 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCC--ceeCCCCceeE-Eee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG--AVIPSSGSVGM-RIQ 297 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG--~~i~~~~~~~i-~~k 297 (306)
++.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +|||||+|++.++|.+||+.|+| ..|.| .+|+| |++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G-r~l~V~~A~ 90 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQFSN 90 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT-EECCBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEEcC
Confidence 35789999999999999999999999999999999963 58999999999999999999874 78884 58999 987
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
..
T Consensus 91 ~~ 92 (105)
T 1sjq_A 91 HK 92 (105)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=3.4e-18 Score=129.11 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCC--CceeE
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSS--GSVGM 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~--~~~~i 294 (306)
.++.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.++ ..|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34589999999999999999999999999999999997543 39999999999999999999999999974 68999
Q ss_pred -EeeCCccc
Q 021857 295 -RIQYPFCC 302 (306)
Q Consensus 295 -~~k~~~~~ 302 (306)
|++..-.+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 99876543
No 30
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=130.60 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=68.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCce--eCCCCceeE-E
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAV--IPSSGSVGM-R 295 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~--i~~~~~~~i-~ 295 (306)
..+++++|||+|||+++++++|+++|++||.|.+|+++. .+|||||+|++.++|.+|++.|||.. |. +.+|+| |
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~-Gr~l~V~~ 87 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIA-GQQAFFNY 87 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSS-SSBCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceEC-CEEEEEEE
Confidence 345689999999999999999999999999999999985 35899999999999999999998764 77 558999 9
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 9754
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=131.92 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
++.++|||+||++++|+++|+++|++||.|.+|+|+.+.. +|||||+|++.++|.+||+.|||..|.|. .++| |
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr-~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN-IIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe-EEEEEE
Confidence 3578999999999999999999999999999999996543 49999999999999999999999999954 7999 8
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=128.34 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCce--eCCCCCCeEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMI--FDAETKSVLH 121 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~--~~~~~g~~i~ 121 (306)
.+++++|||+|||+++|+++|+++|+.| |.|..+ ...||+|||+|.+.++|..|++.|+|.. +. |++|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~---Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIA---GHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEET---TEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeC---CcEEE
Confidence 3578999999999999999999999999 998555 3578999999999999999999999886 56 89999
Q ss_pred EEEcccc
Q 021857 122 TEMAKKN 128 (306)
Q Consensus 122 V~~a~~~ 128 (306)
|+|++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999765
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1.3e-18 Score=133.76 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=68.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
..+|||+|||.++|+++|+++|+.||.|.+|+|+.+.+ +|||||+|.+.++|.+||+.|||..|.| ..++| |++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g-~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND-RKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECCC
Confidence 56899999999999999999999999999999997654 3899999999999999999999999995 47999 8764
No 34
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=127.24 Aligned_cols=79 Identities=14% Similarity=0.312 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCC-CCceeE-Eee
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS-SGSVGM-RIQ 297 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~-~~~~~i-~~k 297 (306)
.++.++|||+|||.++|+++|+++|+.||.|++|++..+ +|||||+|.+.++|++|++.|||..|.+ +..++| |++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 345789999999999999999999999999999999863 5899999999999999999999999995 558999 998
Q ss_pred CCc
Q 021857 298 YPF 300 (306)
Q Consensus 298 ~~~ 300 (306)
..-
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 35
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=132.95 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=69.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCC--ceeCCCCceeE-E
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG--AVIPSSGSVGM-R 295 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG--~~i~~~~~~~i-~ 295 (306)
..+++++|||+|||+++|+++|+++|+.||.|++|+|+.+ +|||||+|++.++|.+|++.||| ..|. +.+|+| |
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~-Gr~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR-GQPIYIQF 103 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBT-TBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceEC-CeEEEEEE
Confidence 3456899999999999999999999999999999999964 58999999999999999999985 5788 458999 9
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 104 a~~k 107 (119)
T 2ad9_A 104 SNHK 107 (119)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 8753
No 36
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=129.94 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCce--eCCCCceeE-Ee
Q 021857 221 PPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAV--IPSSGSVGM-RI 296 (306)
Q Consensus 221 ~~~~tLfV~NLp~-~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~--i~~~~~~~i-~~ 296 (306)
.++++|||+|||+ ++|+++|+++|+.||.|.+|+|+.+ +|||||+|++.++|.+||+.|||.. |. +.+|+| |+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~-Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVF-GKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEET-TEECEEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceEC-CcEEEEEEC
Confidence 3689999999999 9999999999999999999999853 3899999999999999999999754 77 558999 99
Q ss_pred eC
Q 021857 297 QY 298 (306)
Q Consensus 297 k~ 298 (306)
+.
T Consensus 90 ~~ 91 (102)
T 1x4d_A 90 QK 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=125.35 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
++.++|||+|||.++++++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+|++.|||..|. +..++| |
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF-GRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET-TEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEEEe
Confidence 4578999999999999999999999999999999986432 489999999999999999999999999 457999 9
Q ss_pred ee
Q 021857 296 IQ 297 (306)
Q Consensus 296 ~k 297 (306)
+|
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.4e-18 Score=127.59 Aligned_cols=81 Identities=25% Similarity=0.390 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| ..|+| |+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG-KEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC-CeEEEEEC
Confidence 34579999999999999999999999999999999997533 4899999999999999999999999994 58999 99
Q ss_pred eCCcc
Q 021857 297 QYPFC 301 (306)
Q Consensus 297 k~~~~ 301 (306)
+.+-.
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 87643
No 39
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.9e-18 Score=126.12 Aligned_cols=80 Identities=18% Similarity=0.345 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| ..|+| |+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEc
Confidence 34579999999999999999999999999999999996543 4999999999999999999999999994 57999 98
Q ss_pred eCCc
Q 021857 297 QYPF 300 (306)
Q Consensus 297 k~~~ 300 (306)
+..-
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7654
No 40
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=4.5e-18 Score=126.73 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 47 DEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 47 ~~~~~LfV~nLp~-~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
++.++|||+|||+ ++|+++|+++|+.| |.|..++-.+|||||+|.+.++|++|++.|||..+. |+.|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a 92 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNF---GKKLILEVS 92 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEET---TEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEec
Confidence 4689999999998 99999999999999 999777667999999999999999999999999998 899999999
Q ss_pred ccc
Q 021857 126 KKN 128 (306)
Q Consensus 126 ~~~ 128 (306)
+.+
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.7e-18 Score=125.47 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE-NIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence 34578999999999999999999999999999999997542 3999999999999999999999999995 47999 9
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++.+
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=4e-18 Score=123.55 Aligned_cols=76 Identities=16% Similarity=0.324 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEE
Confidence 3579999999999999999999999999999999986522 4899999999999999999999999984 58999 9
Q ss_pred ee
Q 021857 296 IQ 297 (306)
Q Consensus 296 ~k 297 (306)
+|
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 43
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=6.7e-19 Score=139.34 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+||+.|||..|.| ..|+| |+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g-~~l~V~~a 124 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-RELRVQMA 124 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS-SCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEEC
Confidence 46889999999999999999999999999999998643 24899999999999999999999999995 47999 98
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=129.32 Aligned_cols=76 Identities=20% Similarity=0.160 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcC--ceeCCCCCCeEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQE--MIFDAETKSVLHT 122 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g--~~~~~~~g~~i~V 122 (306)
.+.++|||+|||+++||+||+++|+.| |.|..+ ...||||||+|.+.++|+.|++.|++ ..|. |++|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V 86 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYI 86 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEET---TEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEE
Confidence 357899999999999999999999999 998554 45689999999999999999998864 6788 899999
Q ss_pred EEccccc
Q 021857 123 EMAKKNL 129 (306)
Q Consensus 123 ~~a~~~~ 129 (306)
+|++.+.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9996654
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=1.2e-17 Score=128.78 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..++.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| ..++|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT-KRLKV 114 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT-EECCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC-EEEEE
Confidence 345689999999999999999999999999999999986532 4999999999999999999999999995 57999
Q ss_pred -Eee
Q 021857 295 -RIQ 297 (306)
Q Consensus 295 -~~k 297 (306)
|+|
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 986
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=3.7e-18 Score=126.82 Aligned_cols=77 Identities=23% Similarity=0.350 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
|+++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS-RFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEEc
Confidence 468999999999999999999999999999999986532 4999999999999999999999999995 58999 98
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+.+
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 765
No 47
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.1e-18 Score=126.60 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEec--CCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ--ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~--~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+ ..+|||||+|.+.++|.+||+.|||..|.| ..++| |++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT-KPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS-SBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEEec
Confidence 35789999999999999999999999999999999965 224999999999999999999999999984 58999 987
Q ss_pred CCcc
Q 021857 298 YPFC 301 (306)
Q Consensus 298 ~~~~ 301 (306)
..-.
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6543
No 48
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=123.78 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCCce-EEEcCCCCCCCHHHHH----HHHhhcCCCcC-cEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 47 DEVRT-IFITGLPDDVKERELQ----NLLRWLPGYEA-SQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 47 ~~~~~-LfV~nLp~~~tee~L~----~~f~~~~~~~g-~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
+|+.| |||+|||+++++++|+ ++|+.| | .|+.|.. |+|||+|.+.++|++|++.|||..++ ||+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y----GG~Vl~Vtg--G~AfV~F~~~esA~~A~~~l~G~~l~---gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNC----GGKVLSITG--CSAILRFINQDSAERAQKRMENEDVF---GNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTT----TCCEEECCT--TCEEEEESSHHHHHHHHHHHTTCCSS---SSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHc----CCeeEEEec--CEEEEEECCHHHHHHHHHHhcCCccC---CceE
Confidence 45677 9999999999999966 666666 7 9999854 99999999999999999999999999 9999
Q ss_pred EEEEccccchhc
Q 021857 121 HTEMAKKNLFVK 132 (306)
Q Consensus 121 ~V~~a~~~~~~~ 132 (306)
+|.||+.+++..
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999998887644
No 49
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=6.9e-18 Score=124.23 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.+.++|||+|||.++++++|+++|+.||.|.+++++.+.+ +|||||+|.+.++|.+|++.|||..|.| ..++| |++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG-REIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT-BCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcC
Confidence 3578999999999999999999999999999999986432 3999999999999999999999999995 47999 987
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
.+
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=123.27 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-RQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEec
Confidence 578999999999999999999999999999999987532 3899999999999999999999999995 58999 98
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=9.5e-18 Score=125.32 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceE--------EEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeC
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~--------vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~ 287 (306)
.++.++|||+|||.++++++|+++|+.||.|.+ ++++.+.. +|||||+|.+.++|.+|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345799999999999999999999999999999 99987532 499999999999999999999999999
Q ss_pred CCCceeE-Eee
Q 021857 288 SSGSVGM-RIQ 297 (306)
Q Consensus 288 ~~~~~~i-~~k 297 (306)
| ..++| |++
T Consensus 90 g-~~l~V~~A~ 99 (99)
T 2la6_A 90 G-NPIKVSFAT 99 (99)
T ss_dssp S-SBCEEEECC
T ss_pred C-cEEEEEecC
Confidence 5 47999 875
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7e-18 Score=124.88 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
.+++++|||+|||.++++++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+|++.|||..|.| ..++|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence 34588999999999999999999999999999999986532 3899999999999999999999999994 57999
Q ss_pred EeeC
Q 021857 295 RIQY 298 (306)
Q Consensus 295 ~~k~ 298 (306)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=127.16 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC-cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~-~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..+.++|||+|||.++|+++|+++|+.||.|++|+|..+.+ +|||||+|.+.++|.+||+.|||..|.+ ..|+| |++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-YRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT-EECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEcc
Confidence 34578999999999999999999999999999999986544 5999999999999999999999999984 58999 987
Q ss_pred CCc
Q 021857 298 YPF 300 (306)
Q Consensus 298 ~~~ 300 (306)
..-
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=123.44 Aligned_cols=78 Identities=17% Similarity=0.368 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC-----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~-----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
..++|||+|||.++|+++|+++|+.||.|.+++++.+. .+|||||+|.+.++|.+|++.|||..|.| ..++| |
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG-QEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC-eEEEEEE
Confidence 36789999999999999999999999999999998654 35899999999999999999999999995 47999 9
Q ss_pred eeCCc
Q 021857 296 IQYPF 300 (306)
Q Consensus 296 ~k~~~ 300 (306)
++.|-
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87764
No 55
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.2e-18 Score=124.56 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
++++|||+|||.++++++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG-RPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEEc
Confidence 578999999999999999999999999999999996532 4899999999999999999999999995 57999 98
Q ss_pred eCCc
Q 021857 297 QYPF 300 (306)
Q Consensus 297 k~~~ 300 (306)
+..-
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7653
No 56
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=128.49 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCC--ceeCCCCceeE-E
Q 021857 220 NPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG--AVIPSSGSVGM-R 295 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~-~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG--~~i~~~~~~~i-~ 295 (306)
..++++|||+|||++ +++++|+++|+.||.|.+|+|++ .+|||||+|++.++|.+||+.||| ..|.| .+|+| |
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G-r~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQG-RCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS-SCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEE
Confidence 456899999999998 99999999999999999999984 358999999999999999999875 45774 57999 9
Q ss_pred eeC
Q 021857 296 IQY 298 (306)
Q Consensus 296 ~k~ 298 (306)
++.
T Consensus 99 a~~ 101 (112)
T 1x4f_A 99 SEK 101 (112)
T ss_dssp ECS
T ss_pred Ccc
Confidence 875
No 57
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-18 Score=125.62 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
.++.++|||+|||.++|+++|+++|+.||.|.+|++.. .+|||||+|.+.++|.+|++.|||..|.| ..++| |++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~~ 88 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRG-KQLRVRFACH 88 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTT-BCCEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCC-ceEEEEEcCC
Confidence 34678999999999999999999999999999999985 34899999999999999999999999995 57999 9876
Q ss_pred C
Q 021857 299 P 299 (306)
Q Consensus 299 ~ 299 (306)
.
T Consensus 89 ~ 89 (99)
T 2cpj_A 89 S 89 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=1.5e-17 Score=128.30 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=66.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
...+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 108 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPF----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG--- 108 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTS----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC---
Confidence 34678999999999999999999999999 9885542 23699999999999999999999999998
Q ss_pred CCeEEEEEcc
Q 021857 117 KSVLHTEMAK 126 (306)
Q Consensus 117 g~~i~V~~a~ 126 (306)
|+.|+|+|++
T Consensus 109 g~~l~V~~ak 118 (118)
T 2khc_A 109 TKRLKVQLKK 118 (118)
T ss_dssp TEECCEEEC-
T ss_pred CEEEEEEecC
Confidence 8999999984
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.3e-17 Score=128.13 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..++.++|||+|||.++++++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|.+||+.|||..|.+ ..|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-KRLKV 99 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC-EEEEE
Confidence 445678999999999999999999999999999999996542 3899999999999999999999999994 57999
Q ss_pred -EeeCCc
Q 021857 295 -RIQYPF 300 (306)
Q Consensus 295 -~~k~~~ 300 (306)
|++..-
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpz_A 100 QLKRSKN 106 (115)
T ss_dssp ECCCCSC
T ss_pred EEcCCCC
Confidence 887653
No 60
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=122.00 Aligned_cols=74 Identities=20% Similarity=0.411 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHh-CCceeCCCCceeE-Eee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL-QGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~l-nG~~i~~~~~~~i-~~k 297 (306)
.+.++|||+|||.++++++|+++|+.||.|.+++++.+ +|||||+|.+.++|.+|++.| ||..|.| .+++| |+|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g-~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG-RRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT-EECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC-CEEEEEecC
Confidence 45789999999999999999999999999999999963 489999999999999999999 9999995 58999 986
No 61
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=123.32 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.+.++|||+|||.++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|||..|.|. .++| |++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a~~~ 80 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGV-NINVEASKNK 80 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSC-BCEEECSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCc-EEEEEECCCC
Confidence 357999999999999999999999999999999998 38999999999999999999999999954 7999 98776
Q ss_pred cc
Q 021857 300 FC 301 (306)
Q Consensus 300 ~~ 301 (306)
-.
T Consensus 81 ~~ 82 (90)
T 2dnq_A 81 SK 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 62
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=3.6e-18 Score=131.20 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
.++++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 78 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKY----GPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS---NRYLV 78 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS---SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEE
Confidence 467999999999999999999999999 9885542 34799999999999999999999999998 89999
Q ss_pred EEEcccc
Q 021857 122 TEMAKKN 128 (306)
Q Consensus 122 V~~a~~~ 128 (306)
|.|++..
T Consensus 79 v~~a~~~ 85 (115)
T 3lqv_A 79 VLYYNAN 85 (115)
T ss_dssp EEECCHH
T ss_pred EEEecCC
Confidence 9998544
No 63
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=124.53 Aligned_cols=77 Identities=16% Similarity=0.300 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
...++|||+|||.++++++|+++|+.||.|. ++++.+..+|||||+|.+.++|.+|++.|||..|.|. .++| |++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD-TLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS-CCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEEEcCCC
Confidence 3478999999999999999999999999997 7777666679999999999999999999999999954 7999 98765
No 64
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=2.5e-18 Score=131.07 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC-CceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G-~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
...+|||+|||+++++++|+++|+.|| .|..+++..+..+|||||+|.+.++|++||+.|||..|.|. .++| +++.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr-~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS-VITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE-EEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe-EEEEEECCCC
Confidence 467899999999999999999999999 89999997545569999999999999999999999999955 7999 98876
Q ss_pred c
Q 021857 300 F 300 (306)
Q Consensus 300 ~ 300 (306)
.
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 65
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.1e-18 Score=125.34 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+||+.|||..|.| ..++| |
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-RMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS-CEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEE
Confidence 357899999999999999999999999999999998654 24999999999999999999999999995 57999 8
Q ss_pred eeCCc
Q 021857 296 IQYPF 300 (306)
Q Consensus 296 ~k~~~ 300 (306)
++..-
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 87653
No 66
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=128.77 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+||++++|+++|+++|++| |.|..++ .+||||||+|.+.++|++|++.|||..|. |+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~---gr 76 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY----GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM---GN 76 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC---Ce
Confidence 467899999999999999999999999 9885542 23699999999999999999999999999 99
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|+|+++.....
T Consensus 77 ~i~V~~a~~~~~ 88 (110)
T 3s8s_A 77 IIHAQLDIKGQQ 88 (110)
T ss_dssp ECEEEECSTTHH
T ss_pred EEEEEECCCCcH
Confidence 999999965543
No 67
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=6.4e-18 Score=128.46 Aligned_cols=79 Identities=22% Similarity=0.381 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
...+.++|||+|||.++|+++|+++|+.||.|++|+++ +|||||+|.+.++|.+|++.|||..|. +..++| |++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a~ 101 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA-NQPLEVVYSK 101 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET-TEECEEESCS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEec
Confidence 34468999999999999999999999999999999998 489999999999999999999999998 558999 998
Q ss_pred CCccc
Q 021857 298 YPFCC 302 (306)
Q Consensus 298 ~~~~~ 302 (306)
.+-.+
T Consensus 102 ~~~~r 106 (108)
T 2jvo_A 102 LPAKR 106 (108)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 76554
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=124.92 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.+.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG-RPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT-EECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC-CEEEEEEc
Confidence 3579999999999999999999999999999999997543 3899999999999999999999999995 57999 98
Q ss_pred eC
Q 021857 297 QY 298 (306)
Q Consensus 297 k~ 298 (306)
++
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 69
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=124.79 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| ..|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH-LILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEE
Confidence 34589999999999999999999999999999999986532 3899999999999999999999999994 58999
Q ss_pred EeeCCc
Q 021857 295 RIQYPF 300 (306)
Q Consensus 295 ~~k~~~ 300 (306)
|++..-
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987653
No 70
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=1.1e-17 Score=120.47 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=66.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
....|||+||++++||++|+++|..| |.|+.+ ...||||||+|.+.++|.+|++.|||..++ ||+|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~---gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLA---NTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEET---TEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEEC---CcEEEEEEC
Confidence 46789999999999999999999999 999665 467999999999999999999999999999 899999999
Q ss_pred c
Q 021857 126 K 126 (306)
Q Consensus 126 ~ 126 (306)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 71
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=124.65 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=68.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhc--CceeCCCCCCeE
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQ--EMIFDAETKSVL 120 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~--g~~~~~~~g~~i 120 (306)
...+.++|||+|||+++|+++|+++|+.| |.|+.+ ...||||||+|.+.++|++|++.|+ +..+. |++|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLR---NQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEET---TEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC---CcEE
Confidence 34678999999999999999999999999 988554 4568999999999999999999875 56788 8999
Q ss_pred EEEEccccc
Q 021857 121 HTEMAKKNL 129 (306)
Q Consensus 121 ~V~~a~~~~ 129 (306)
+|+|++.+.
T Consensus 84 ~V~~a~~~~ 92 (101)
T 2cq1_A 84 YIQYSNHKE 92 (101)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCccc
Confidence 999997554
No 72
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=126.55 Aligned_cols=76 Identities=13% Similarity=0.283 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCC--ceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCc----eeCCCCc
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPG--FKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGA----VIPSSGS 291 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~--i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~----~i~~~~~ 291 (306)
.-.||||+|||+++|+++|+++|+.||. |.+|+++.+.. +|||||+|.+.++|.+||+.|||. .|. +.+
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~-Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID-GKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET-TEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC-CEE
Confidence 3578999999999999999999999995 67899886532 499999999999999999999997 477 458
Q ss_pred eeE-EeeC
Q 021857 292 VGM-RIQY 298 (306)
Q Consensus 292 ~~i-~~k~ 298 (306)
++| |+|+
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 999 9986
No 73
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=123.67 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||.++++++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+||+ |||..|.|. .++| |
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~-~l~V~~ 85 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK-KVEVKR 85 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC-BCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe-EEEEEE
Confidence 357899999999999999999999999999999998643 24999999999999999999 999999954 7999 9
Q ss_pred eeCCc
Q 021857 296 IQYPF 300 (306)
Q Consensus 296 ~k~~~ 300 (306)
++.+-
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 87653
No 74
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=126.51 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| ..|+| |
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG-RELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT-BCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEE
Confidence 3579999999999999999999999999999999986432 4999999999999999999999999995 57999 9
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8854
No 75
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=131.56 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=69.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCCceEEEEEec-CCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 220 NPPCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQ-ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~----~~F~~~G~i~~vkl~~~-~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
.+++++|||+|||+.+++++|+ ++|+.||.|.+|.+... ..+|||||+|.+.++|.+|+..|||..|.|. +|+|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr-~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN-PLVI 104 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS-CCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC-EEEE
Confidence 3468899999999999999876 79999999999988753 2359999999999999999999999999955 8999
Q ss_pred -EeeCC
Q 021857 295 -RIQYP 299 (306)
Q Consensus 295 -~~k~~ 299 (306)
|++..
T Consensus 105 ~~a~~~ 110 (127)
T 2a3j_A 105 TFSETP 110 (127)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 99864
No 76
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=125.70 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCce--eCCCCCCeEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMI--FDAETKSVLHT 122 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~--~~~~~g~~i~V 122 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..+ ...||||||+|.+.++|++|++.|++.. +. |++|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~---Gr~l~V 85 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIA---GQQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSS---SSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEE
Confidence 568999999999999999999999999 998554 4568999999999999999999997654 66 899999
Q ss_pred EEccccc
Q 021857 123 EMAKKNL 129 (306)
Q Consensus 123 ~~a~~~~ 129 (306)
+|++.+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9997654
No 77
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=127.07 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=68.4
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCc--eeCCCCCCeE
Q 021857 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEM--IFDAETKSVL 120 (306)
Q Consensus 46 ~~~~~~LfV~nLp~-~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~--~~~~~~g~~i 120 (306)
..+.++|||+|||+ ++|++||+++|+.| |.|..+ ...||||||+|.+.++|+.|++.||+. .|. |++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF---GKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET---TEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC---CcEE
Confidence 45789999999999 99999999999999 999555 356899999999999999999999865 477 8999
Q ss_pred EEEEccccch
Q 021857 121 HTEMAKKNLF 130 (306)
Q Consensus 121 ~V~~a~~~~~ 130 (306)
+|+|++....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999965543
No 78
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=125.72 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC-----CcceEEEEECCHHHHHHHHHHh-CCceeCCCCcee
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNL-QGAVIPSSGSVG 293 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~-----~~g~aFV~F~~~~~A~~Ai~~l-nG~~i~~~~~~~ 293 (306)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+||+.| ||..|.|. .|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~-~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR-RLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC-BCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC-EEE
Confidence 3457899999999999999999999999999999998652 2499999999999999999999 99999954 799
Q ss_pred E-EeeCC
Q 021857 294 M-RIQYP 299 (306)
Q Consensus 294 i-~~k~~ 299 (306)
| |++..
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9 98764
No 79
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=7.2e-18 Score=136.31 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=69.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCC-CCceeE-EeeCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS-SGSVGM-RIQYP 299 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~-~~~~~i-~~k~~ 299 (306)
..+|||+||++.+|+++|+++|++||.|++|+|+.+..+|||||+|++.++|++|++.|||+.|.+ +..|+| |+|..
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 456899999999999999999999999999999865556899999999999999999999999975 368999 99864
No 80
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7e-18 Score=125.71 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC-------cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~-------~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| ..++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-HKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEE
Confidence 478899999999999999999999999999999986432 3899999999999999999999999994 58999
Q ss_pred -EeeCCcc
Q 021857 295 -RIQYPFC 301 (306)
Q Consensus 295 -~~k~~~~ 301 (306)
|++..-.
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 8876543
No 81
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.4e-17 Score=120.05 Aligned_cols=75 Identities=20% Similarity=0.386 Sum_probs=68.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
.+|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|. +.+++| |++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN-GRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET-TEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC-CcEEEEEecCc
Confidence 5899999999999999999999999999999996532 499999999999999999999999998 458999 9875
Q ss_pred C
Q 021857 299 P 299 (306)
Q Consensus 299 ~ 299 (306)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 82
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.5e-18 Score=124.69 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhccCCCceEEEEEecCC-cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 222 PCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~----~~F~~~G~i~~vkl~~~~~-~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+++|||+|||+++++++|+ ++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| .+++| |
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g-r~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS-KKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence 47899999999999999999 9999999999999996432 5899999999999999999999999995 47999 9
Q ss_pred eeCCc
Q 021857 296 IQYPF 300 (306)
Q Consensus 296 ~k~~~ 300 (306)
++..-
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 87653
No 83
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=2.2e-17 Score=126.76 Aligned_cols=79 Identities=14% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|++||+.|||..|.| ..|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-RQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence 34589999999999999999999999999999999997532 3899999999999999999999999995 58999
Q ss_pred EeeCC
Q 021857 295 RIQYP 299 (306)
Q Consensus 295 ~~k~~ 299 (306)
|++..
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 88754
No 84
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.8e-18 Score=125.67 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=65.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--eeC-CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YKG-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--~~~-~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~ 126 (306)
++|||+|||+++|+++|+++|+.| |.|.. +.. .+|||||+|.+.++|++|++.|+|..+. |+.|+|+|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY----GPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVIC---GSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH----CCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSS---SCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeEC---CcEEEEEEcc
Confidence 589999999999999999999999 88733 333 5899999999999999999999999998 8999999996
Q ss_pred ccc
Q 021857 127 KNL 129 (306)
Q Consensus 127 ~~~ 129 (306)
.+.
T Consensus 74 ~~~ 76 (101)
T 2hvz_A 74 GMP 76 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 85
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=1.3e-17 Score=124.18 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 219 DNPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~-~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
..+++++|||+|||. ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|||..|. +.+++| |+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 92 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF-GKKLILEVS 92 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET-TEECEEEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEec
Confidence 345689999999998 99999999999999999999995 389999999999999999999999999 457999 98
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 86
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=7.8e-18 Score=121.23 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=66.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
+.-|||+||++.+|+++|+++|.+||.|+++++.. .+|||||+|.++++|.+|++.|||..+.|+ .|+| |+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr-~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANT-TIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTE-EEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCc-EEEEEECC
Confidence 56799999999999999999999999999999985 459999999999999999999999999955 6898 874
No 87
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=124.64 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+|++.|||..|.| ..++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG-KPIRVN 90 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS-CBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEE
Confidence 3457999999999999999999999999999999998654 23899999999999999999999999995 47999
Q ss_pred EeeCCcc
Q 021857 295 RIQYPFC 301 (306)
Q Consensus 295 ~~k~~~~ 301 (306)
|++..-+
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9876543
No 88
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=128.30 Aligned_cols=79 Identities=20% Similarity=0.166 Sum_probs=68.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--eeCCcCeEEEEeCCHHHHHHHHHHhcC--ceeCCCCCCeE
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YKGEKPMGFALFSTAQLAVAAKDALQE--MIFDAETKSVL 120 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--~~~~kg~aFV~F~~~~~A~~Al~~l~g--~~~~~~~g~~i 120 (306)
...++++|||+|||+++||++|+++|+.| |.|+. +...||||||+|.+.++|++|++.|++ ..|. |++|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~f----G~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~---Gr~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPI 99 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTT----SCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBT---TBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceEC---CeEE
Confidence 34578999999999999999999999999 88844 345689999999999999999999985 5677 8999
Q ss_pred EEEEccccch
Q 021857 121 HTEMAKKNLF 130 (306)
Q Consensus 121 ~V~~a~~~~~ 130 (306)
+|+|++.+..
T Consensus 100 ~V~~a~~k~~ 109 (119)
T 2ad9_A 100 YIQFSNHKEL 109 (119)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCCCC
Confidence 9999976543
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=125.37 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC----CceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS----GSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~----~~~~i-~~ 296 (306)
..++|||+|||+++|+++|+++|+.||.|..|+|+.+ |||||+|.+.++|.+||+.|||..|.+. ..|+| |+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 4789999999999999999999999999999999964 8999999999999999999999999961 47888 88
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 91 ~~~ 93 (108)
T 1x4c_A 91 GPR 93 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 90
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=122.31 Aligned_cols=76 Identities=14% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.+.++|||+|||.++|+++|+++|+.||.|.+|+++. +||||+|.+.++|.+|+..|||..|.| ..++| |++..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~~~ 82 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQG-KRMHVQLSTSR 82 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETT-EEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEEccCC
Confidence 3578999999999999999999999999999999984 599999999999999999999999994 58999 98765
Q ss_pred cc
Q 021857 300 FC 301 (306)
Q Consensus 300 ~~ 301 (306)
-.
T Consensus 83 ~~ 84 (92)
T 2dgt_A 83 LR 84 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 91
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=1.4e-17 Score=129.84 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=67.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcce-EEEEECCHHHHHHHHHHhCCceeCCC-CceeE-EeeCC
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTV-CFIEFEDVNSASSVHHNLQGAVIPSS-GSVGM-RIQYP 299 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~-aFV~F~~~~~A~~Ai~~lnG~~i~~~-~~~~i-~~k~~ 299 (306)
..|||+||++.+|+++|+++|++||.|.+|+++.+. +|| |||+|.+.++|.+|++.|||+.|.++ ..|+| |+|..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 456799999999999999999999999999998654 466 99999999999999999999999863 67899 99864
No 92
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=5.6e-17 Score=125.76 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=68.1
Q ss_pred CCCCE--EEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcce-EEEEECCHHHHHHHHHHhCCceeCCC-CceeE-E
Q 021857 221 PPCNT--LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTV-CFIEFEDVNSASSVHHNLQGAVIPSS-GSVGM-R 295 (306)
Q Consensus 221 ~~~~t--LfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~-aFV~F~~~~~A~~Ai~~lnG~~i~~~-~~~~i-~ 295 (306)
+++++ |||+||++.+|+++|+++|+.||.|.+|+|+. .. || |||+|++.++|..|++.|||+.|.++ ..|+| |
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-RN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-SS-SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CC-CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 45655 57999999999999999999999999999985 33 86 99999999999999999999999975 57999 9
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
+|..
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 9854
No 93
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=124.88 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..++.++|||+|||..+++++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+|++.|||..|.| ..++|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g-~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG-RPMKV 100 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEE
Confidence 344678999999999999999999999999999999996533 3899999999999999999999999995 47999
Q ss_pred -EeeCC
Q 021857 295 -RIQYP 299 (306)
Q Consensus 295 -~~k~~ 299 (306)
|++..
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 88753
No 94
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=126.77 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=68.1
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHhhcCCCcCcEE--EeeCCcCeEEEEeCCHHHHHHHHHHhcCc--eeCCCCCCe
Q 021857 45 AHDEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQV--NYKGEKPMGFALFSTAQLAVAAKDALQEM--IFDAETKSV 119 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~-~tee~L~~~f~~~~~~~g~iv--~~~~~kg~aFV~F~~~~~A~~Al~~l~g~--~~~~~~g~~ 119 (306)
...+.++|||+|||++ +|++||+++|+.| |.|. .+...||||||+|.+.++|+.|++.|++. .|. |++
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~---Gr~ 93 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQ---GRC 93 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSS---SSC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEE
Confidence 3567999999999998 9999999999999 8884 44467899999999999999999988754 477 899
Q ss_pred EEEEEccccch
Q 021857 120 LHTEMAKKNLF 130 (306)
Q Consensus 120 i~V~~a~~~~~ 130 (306)
|+|+|++.+..
T Consensus 94 l~V~~a~~~~~ 104 (112)
T 1x4f_A 94 VKVDLSEKYKK 104 (112)
T ss_dssp CEEEEECSCSS
T ss_pred EEEEECccccc
Confidence 99999965543
No 95
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=7.5e-18 Score=128.07 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~ 126 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++-.+|||||+|.+.++|++|++.|||..+. |+.|+|+|++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a~ 101 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPF----GPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFA---NQPLEVVYSK 101 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTT----SCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEESCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEec
Confidence 567999999999999999999999999 888555433899999999999999999999999998 8999999997
Q ss_pred ccc
Q 021857 127 KNL 129 (306)
Q Consensus 127 ~~~ 129 (306)
...
T Consensus 102 ~~~ 104 (108)
T 2jvo_A 102 LPA 104 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 96
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=8.6e-17 Score=127.61 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
...+.++|||+|||.++++++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|.+||+.|||..|.|. .|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK-RLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC-EEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-EEEE
Confidence 344679999999999999999999999999999999997643 49999999999999999999999999954 7999
Q ss_pred -EeeCCcc
Q 021857 295 -RIQYPFC 301 (306)
Q Consensus 295 -~~k~~~~ 301 (306)
|++..-.
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 9887544
No 97
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=2.5e-17 Score=124.70 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.+.++|||+|||..+|+++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| ..|+| |+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG-RPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEEe
Confidence 4589999999999999999999999999999999996543 3899999999999999999999999984 58999 98
Q ss_pred eC
Q 021857 297 QY 298 (306)
Q Consensus 297 k~ 298 (306)
++
T Consensus 106 ~s 107 (107)
T 3ulh_A 106 TS 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 98
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-17 Score=121.52 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
..+.++|||+|||+++|+++|+++|+.|.. |.|..++..+|||||+|.+.++|++|++.|||..|. |+.|+|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD---GSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEET---TEEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeC---CcEEEEEEC
Confidence 356899999999999999999999999843 678777777899999999999999999999999998 899999999
Q ss_pred cccc
Q 021857 126 KKNL 129 (306)
Q Consensus 126 ~~~~ 129 (306)
+.+.
T Consensus 87 ~~~~ 90 (99)
T 2cpd_A 87 KPVD 90 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 99
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=125.26 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
.+++|||+|||.++++++|+++|+.||.|.++++.. .+|||||+|.+.++|.+|+..|||..|.| ..++| |++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQG-RNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETT-EECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEeccC
Confidence 478999999999999999999999999999999983 45899999999999999999999999994 57999 9875
No 100
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=125.04 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
..+.++|||+|||.++++++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|.+||+.|||..|. +..|+| |
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF-DRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-CCEEEEEE
Confidence 34578999999999999999999999999999999997543 389999999999999999999999999 457999 9
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8754
No 101
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=126.83 Aligned_cols=79 Identities=18% Similarity=0.348 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC--cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~--~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
..+.++|||+|||.++|+++|+++|+.||.|.+|+++.+.+ +|||||+|.+.++|.+|++.|||..|.| ..++| |+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEEC
Confidence 34579999999999999999999999999999999986543 4999999999999999999999999995 58999 98
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 102
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=127.58 Aligned_cols=78 Identities=21% Similarity=0.433 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
+.++|||+|||.++|+++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|++|++.|||..|.| ..|+| |++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG-KAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS-SBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEECC
Confidence 468999999999999999999999999999999997542 3999999999999999999999999995 47999 998
Q ss_pred CCc
Q 021857 298 YPF 300 (306)
Q Consensus 298 ~~~ 300 (306)
.+-
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.7e-17 Score=130.17 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
...+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+||+.|||..|.| ..|+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g-~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRV 120 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEE
Confidence 34468899999999999999999999999999999998643 24999999999999999999999999995 47999
Q ss_pred -EeeCC
Q 021857 295 -RIQYP 299 (306)
Q Consensus 295 -~~k~~ 299 (306)
|++..
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 88754
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.8e-17 Score=122.88 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeC-------CCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIP-------SSG 290 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~-------~~~ 290 (306)
.+.++|||+|||.++|+++|+++|+.||.|.+++|+.+.. +|||||+|.+.++|.+|++.|||..|. .+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4578999999999999999999999999999999997543 389999999999999999999999995 355
Q ss_pred ceeE-EeeCC
Q 021857 291 SVGM-RIQYP 299 (306)
Q Consensus 291 ~~~i-~~k~~ 299 (306)
+++| |++.+
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 7889 99854
No 105
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=2.9e-17 Score=118.99 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 76 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---G 76 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3578999999999999999999999999 9885552 13699999999999999999999999998 8
Q ss_pred CeEEEEEcc
Q 021857 118 SVLHTEMAK 126 (306)
Q Consensus 118 ~~i~V~~a~ 126 (306)
+.|+|+|++
T Consensus 77 ~~l~v~~ak 85 (85)
T 3mdf_A 77 RTIRVNLAK 85 (85)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999985
No 106
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=123.61 Aligned_cols=77 Identities=22% Similarity=0.493 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCce-EEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCc----e
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFK-QMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS----V 292 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~-~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~----~ 292 (306)
+.++|||+|||.++++++|+++|+.||.|. +|+|+.+.. +|||||+|.+.++|++|++.|||..|.|. . +
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA-TPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC-SSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC-CcceeE
Confidence 579999999999999999999999999999 999997542 39999999999999999999999999965 5 8
Q ss_pred eE-EeeCC
Q 021857 293 GM-RIQYP 299 (306)
Q Consensus 293 ~i-~~k~~ 299 (306)
+| |++..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 88 88764
No 107
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=124.59 Aligned_cols=80 Identities=19% Similarity=0.344 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||.++++++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+|++.|||..|.| ..|+| |
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG-RQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS-CCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence 357899999999999999999999999999999998643 24899999999999999999999999995 47999 9
Q ss_pred eeCCcc
Q 021857 296 IQYPFC 301 (306)
Q Consensus 296 ~k~~~~ 301 (306)
++..-.
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 887543
No 108
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=124.88 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.++++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-QPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS-SBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC-cEEEEEe
Confidence 3578999999999999999999999999999999986543 4999999999999999999999999995 47999 8
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8653
No 109
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=123.94 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
+..++|||+|||.++++++|+++|+.||.|..++++.+.. +|||||+|.+.++|++||+.|||..|.| ..++| |
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEEEE
Confidence 3578999999999999999999999999998776664422 4999999999999999999999999995 57999 9
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++.|
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8876
No 110
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.1e-17 Score=122.80 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=67.7
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 220 NPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 220 ~~~~~tLfV~NLp~-~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.+++++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..|.| .+++| |++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG-KKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT-TTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEEEcC
Confidence 34689999999998 99999999999999999999996 3899999999999999999999999995 47999 987
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
..
T Consensus 82 ~~ 83 (96)
T 2kvi_A 82 SN 83 (96)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 111
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.6e-17 Score=121.57 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ +.+|||||+|.+.++|++|++.|+|..|. |+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI----GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL---GKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET---TEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc----CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC---CCe
Confidence 3568999999999999999999999999 8885442 34799999999999999999999999998 899
Q ss_pred EEEEEccccch
Q 021857 120 LHTEMAKKNLF 130 (306)
Q Consensus 120 i~V~~a~~~~~ 130 (306)
|+|+|++....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2cqi_A 85 VKVNWATTPSS 95 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEECCCCcc
Confidence 99999976543
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=120.97 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~ 126 (306)
.+.++|||+|||.++|+++|+++|+.| |.|..++-.||||||+|.+.++|++|++.|||..+. |+.|+|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLH---GVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCS---SCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccC---CcEEEEEECC
Confidence 568999999999999999999999999 999776555899999999999999999999999998 8999999996
Q ss_pred ccch
Q 021857 127 KNLF 130 (306)
Q Consensus 127 ~~~~ 130 (306)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 113
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-18 Score=122.31 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=67.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.|. .+++ ++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ-MAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE-SCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE-EEeecCC
Confidence 578999999999999999999999999999999986532 49999999999999999999999999954 6777 66
Q ss_pred e
Q 021857 297 Q 297 (306)
Q Consensus 297 k 297 (306)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 114
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=121.97 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccC--CCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~--G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
..+.++|||+|||.++|+++|+++|+.| |.|.+|++.+ |||||+|.+.++|.+||..|||..|.| ..|+| |+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG-SPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT-EEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC-cEEEEEEC
Confidence 3468999999999999999999999999 8999998863 799999999999999999999999994 58999 98
Q ss_pred eCCc
Q 021857 297 QYPF 300 (306)
Q Consensus 297 k~~~ 300 (306)
+..-
T Consensus 87 ~~~~ 90 (99)
T 2cpd_A 87 KPVD 90 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 115
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=121.51 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.+.++|||+|||.++|+++|+++|+.||.|.+++++. +||||+|.+.++|.+|++.|||..|.| ..++| |++..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKG-KRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEECCCC
Confidence 3578999999999999999999999999999999984 599999999999999999999999994 58999 98876
Q ss_pred cc
Q 021857 300 FC 301 (306)
Q Consensus 300 ~~ 301 (306)
-.
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 116
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=126.32 Aligned_cols=79 Identities=10% Similarity=0.219 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HhhccCCCceEEEEEecCC-------cceEEEEECCHHHHHHHHHHhCCceeCCCCc
Q 021857 222 PCNTLFIGNLGESINEEELR---GLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~---~~F~~~G~i~~vkl~~~~~-------~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~ 291 (306)
..++|||+|||+++++++|+ ++|+.||.|.+|+|+.+.. +|||||+|.+.++|++||+.|||..|.| ..
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g-r~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG-RT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-EE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-EE
Confidence 46789999999999999999 9999999999999986432 2899999999999999999999999995 48
Q ss_pred eeE-EeeCCcc
Q 021857 292 VGM-RIQYPFC 301 (306)
Q Consensus 292 ~~i-~~k~~~~ 301 (306)
++| |++..+|
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 999 9988774
No 117
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=1.8e-17 Score=124.76 Aligned_cols=75 Identities=23% Similarity=0.389 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCCc
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYPF 300 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~~ 300 (306)
+.++|||+|||.++|+++|+++|+.||.|.+|+++. +||||+|.+.++|.+||+.|||..|.+ ..|+| |++.+-
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~ 84 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEG-ENIEIVFAKPPD 84 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCC-CEEEEEEcCCCc
Confidence 578999999999999999999999999999999984 699999999999999999999999994 58999 987654
Q ss_pred c
Q 021857 301 C 301 (306)
Q Consensus 301 ~ 301 (306)
.
T Consensus 85 ~ 85 (103)
T 2dgu_A 85 Q 85 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 118
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=128.37 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~----~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.++++|||+|||+.+++++|+ ++|+.| |.|+.+. ..||||||+|.+.++|..|++.|||..|. |
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~---g 99 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ---G 99 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC---C
Confidence 467899999999999999987 578888 9986552 35799999999999999999999999998 8
Q ss_pred CeEEEEEccccchhc
Q 021857 118 SVLHTEMAKKNLFVK 132 (306)
Q Consensus 118 ~~i~V~~a~~~~~~~ 132 (306)
++|+|+|++.+....
T Consensus 100 r~l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 100 NPLVITFSETPQSQV 114 (127)
T ss_dssp SCCEEEECCCCCHHH
T ss_pred CEEEEEEccCcchhc
Confidence 999999998776533
No 119
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=3.1e-17 Score=125.89 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC-cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~-~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
++++|||+|||.++|+++|+++|+.||.|.+|+++.+.+ +|||||+|.+.++|.+|+..|||..|.| ..++| |++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN-RYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS-CBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEecC
Confidence 578999999999999999999999999999999986543 4999999999999999999999999985 47999 8874
No 120
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=126.09 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|.+|+..|||..|.| ..++| |++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG-HVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT-EECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEecCCC
Confidence 35789999999999999999999999999999999964 5899999999999999999999999994 58999 98865
Q ss_pred c
Q 021857 300 F 300 (306)
Q Consensus 300 ~ 300 (306)
-
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=5.7e-17 Score=121.99 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~ 126 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++-.+|||||+|.+.++|++|++.|||..|. |+.|+|+|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE---GENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET---TEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC---CCEEEEEEcC
Confidence 467999999999999999999999999 999888767899999999999999999999999998 8999999997
Q ss_pred ccch
Q 021857 127 KNLF 130 (306)
Q Consensus 127 ~~~~ 130 (306)
.+..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6654
No 122
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=135.16 Aligned_cols=76 Identities=9% Similarity=0.149 Sum_probs=65.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcC--cEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA--SQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g--~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
...++|||+|||+++|+++|+++|+.| | .|+.++ ..||||||+|.+.++|++|++.|||..|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~--- 125 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSI----GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN--- 125 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHT----TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHH----CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---
Confidence 467899999999999999999999999 8 664432 23699999999999999999999999999
Q ss_pred CCeEEEEEccccc
Q 021857 117 KSVLHTEMAKKNL 129 (306)
Q Consensus 117 g~~i~V~~a~~~~ 129 (306)
|+.|+|.++..+.
T Consensus 126 Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 126 GEKVDVRPATRQN 138 (156)
T ss_dssp TEECEEEECCHHH
T ss_pred CeEeEEEEcCCCc
Confidence 9999999996554
No 123
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=119.95 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=63.0
Q ss_pred CCCCE-EEEcCCCCCCCHHH----HHHhhccCC-CceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 221 PPCNT-LFIGNLGESINEEE----LRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 221 ~~~~t-LfV~NLp~~~t~e~----L~~~F~~~G-~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
+|+.| |||+|||+++++++ |+++|+.|| .|.+| . +|+|||.|.+.++|.+|++.|||+.|.|+ +|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr-~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---T---GCSAILRFINQDSAERAQKRMENEDVFGN-RIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---C---TTCEEEEESSHHHHHHHHHHHTTCCSSSS-CCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---e---cCEEEEEECCHHHHHHHHHHhcCCccCCc-eEEE
Confidence 35666 99999999999988 558999995 99887 1 28999999999999999999999999955 8999
Q ss_pred -EeeCC
Q 021857 295 -RIQYP 299 (306)
Q Consensus 295 -~~k~~ 299 (306)
|++..
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 99864
No 124
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=122.78 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=64.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEe-e-----CCcCeEEEEeCCHHHHHHHHHHhcCc----e
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNY-K-----GEKPMGFALFSTAQLAVAAKDALQEM----I 111 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~-~-----~~kg~aFV~F~~~~~A~~Al~~l~g~----~ 111 (306)
+..-.||||+|||+++|+|+|+++|+.| |.+ |++ + .+||||||+|.+.++|++|++.|||. .
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~----G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPY----ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTT----CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhh----CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 3457899999999999999999999999 742 333 1 24799999999999999999999997 3
Q ss_pred eCCCCCCeEEEEEccc
Q 021857 112 FDAETKSVLHTEMAKK 127 (306)
Q Consensus 112 ~~~~~g~~i~V~~a~~ 127 (306)
++ ||.|+|+||++
T Consensus 82 i~---Gr~i~V~~Aks 94 (95)
T 2lkz_A 82 ID---GKTIGVDFAKS 94 (95)
T ss_dssp ET---TEEEEEEECCC
T ss_pred EC---CEEEEEEEccC
Confidence 67 89999999975
No 125
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.5e-17 Score=121.99 Aligned_cols=76 Identities=17% Similarity=0.324 Sum_probs=68.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 92 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY----GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD---GYRLR 92 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEE
Confidence 467999999999999999999999999 9885442 24799999999999999999999999998 89999
Q ss_pred EEEccccc
Q 021857 122 TEMAKKNL 129 (306)
Q Consensus 122 V~~a~~~~ 129 (306)
|+|++.+.
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99996654
No 126
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=2.2e-17 Score=124.76 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCcee---CCCCce
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVI---PSSGSV 292 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i---~~~~~~ 292 (306)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+|++.|||..+ . +.++
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM-NRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC-SSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC-CceE
Confidence 3457899999999999999999999999999999998643 249999999999999999999999987 5 4679
Q ss_pred eE-EeeCCcc
Q 021857 293 GM-RIQYPFC 301 (306)
Q Consensus 293 ~i-~~k~~~~ 301 (306)
+| |++..-.
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 99 9886543
No 127
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=124.67 Aligned_cols=78 Identities=15% Similarity=0.279 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+|++.|||..|. +..|+| |+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF-GRTIRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET-TEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEeC
Confidence 57899999999999999999999999999999998642 2499999999999999999999999999 458999 98
Q ss_pred eCCc
Q 021857 297 QYPF 300 (306)
Q Consensus 297 k~~~ 300 (306)
+.+-
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.3e-18 Score=127.65 Aligned_cols=74 Identities=24% Similarity=0.260 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEE--EeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV--NYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv--~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
..+++|||+|||.++|+++|+++|+.| |.|. .+...+|||||+|.+.++|++|++.|||..+. |+.|+|+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNF----GFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQ---GRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTT----SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET---TEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhC----CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEe
Confidence 347899999999999999999999999 8884 44467899999999999999999999999998 89999999
Q ss_pred ccc
Q 021857 125 AKK 127 (306)
Q Consensus 125 a~~ 127 (306)
++.
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 129
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=124.45 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhC------CceeCCCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQ------GAVIPSSG 290 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~ln------G~~i~~~~ 290 (306)
.+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+. .+|||||+|.+.++|.+||+.|| |..|.| .
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g-~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG-R 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS-C
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC-E
Confidence 357899999999999999999999999999999999653 24999999999999999999999 999985 4
Q ss_pred ceeE-EeeCC
Q 021857 291 SVGM-RIQYP 299 (306)
Q Consensus 291 ~~~i-~~k~~ 299 (306)
.|+| |++..
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 7999 88654
No 130
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=3.7e-17 Score=125.53 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=67.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|+.+ . ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 94 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF----GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---M 94 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG----SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---T
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 3567999999999999999999999999 777332 1 12599999999999999999999999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|+|++.+..
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 9999999976643
No 131
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=119.81 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++-.++||||+|.+.++|++|++.|||..|. |+.|+|+|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ---GKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEET---TEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEEEEc
Confidence 3568999999999999999999999999 998777666889999999999999999999999998 899999999
Q ss_pred cccch
Q 021857 126 KKNLF 130 (306)
Q Consensus 126 ~~~~~ 130 (306)
+.+..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 76543
No 132
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=7.5e-18 Score=123.70 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=63.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCC--CceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G--~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.+|||+|||+++|+++|+++|+.|| .|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.|. .++| ++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr-~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ-NPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC-CCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE-EEEEEEC
Confidence 4799999999999999999999999 999999997532 49999999999999999999999999955 7999 87
Q ss_pred eCCc
Q 021857 297 QYPF 300 (306)
Q Consensus 297 k~~~ 300 (306)
+.+-
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 133
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=122.86 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC-----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~-----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
.+.++|||+|||.++++++|+++|+.|| |.+|+|+.+.. +|||||+|.+.++|.+|| .|||..|.| ..|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-KRIRVD 89 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT-EECEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC-cEEEEE
Confidence 3578999999999999999999999999 99999986532 489999999999999999 999999985 47999
Q ss_pred EeeCCc
Q 021857 295 RIQYPF 300 (306)
Q Consensus 295 ~~k~~~ 300 (306)
|++..-
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987653
No 134
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-16 Score=125.75 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 111 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY----GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL---N 111 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH----SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 4568999999999999999999999999 8885442 12699999999999999999999999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|+|++.+..
T Consensus 112 ~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 112 KRLKVALAASGHQ 124 (139)
T ss_dssp CEEEEEESSCCCC
T ss_pred eEEEEEECCCCCC
Confidence 9999999976543
No 135
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=123.02 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=62.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcC-cEEEee--------CCcCeEEEEeCCHHHHHHHHHHhc-CceeCCCCCC
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEA-SQVNYK--------GEKPMGFALFSTAQLAVAAKDALQ-EMIFDAETKS 118 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g-~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~-g~~~~~~~g~ 118 (306)
+++|||+|||+++||++|+++|+.| | .|..++ ..||||||+|.+.++|++|++.|+ +..+. |+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---gr 73 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH----GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL---GQ 73 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH----TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET---TE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh----CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC---CE
Confidence 3699999999999999999999999 7 453321 347999999999999999999874 55677 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|+|++++.
T Consensus 74 ~i~V~~a~~~~ 84 (91)
T 2lxi_A 74 KVSMHYSDPKP 84 (91)
T ss_dssp EEEEECCCSCC
T ss_pred EEEEEEcCCCC
Confidence 99999997654
No 136
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=123.33 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEE-EEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQM-KVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~v-kl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
++++|||+|||.++++++|+++|+.||.|.++ +|+.+. .+|||||+|.+.++|.+|++.|||..|. +..++| |
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC-NRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET-TEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEE
Confidence 47899999999999999999999999999999 998642 2489999999999999999999999998 458999 9
Q ss_pred eeCCc
Q 021857 296 IQYPF 300 (306)
Q Consensus 296 ~k~~~ 300 (306)
++..-
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87653
No 137
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=1.1e-17 Score=125.30 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCc
Q 021857 222 PCNTLFIGNLGE------SINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (306)
Q Consensus 222 ~~~tLfV~NLp~------~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~ 291 (306)
.+++|||+|||. ++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.|+..
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 999999999999999999999986553 4999999999999999999999999997468
Q ss_pred eeE-Eee
Q 021857 292 VGM-RIQ 297 (306)
Q Consensus 292 ~~i-~~k 297 (306)
++| +++
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 999 875
No 138
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-18 Score=125.26 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=66.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC-CceEEEEEecC----CcceEEEEECCHHHHHHHHHHhC-CceeCCCCceeE-E
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQ-GAVIPSSGSVGM-R 295 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G-~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~ln-G~~i~~~~~~~i-~ 295 (306)
+++|||+|||.++|+++|+++|+.|| .|++|+|+.+. .+|||||+|.+.++|.+||+.|+ |..|. +.+++| |
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~-gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL-GQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET-TEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC-CEEEEEEE
Confidence 36899999999999999999999999 79999998643 24999999999999999999885 56787 458999 9
Q ss_pred eeCCc
Q 021857 296 IQYPF 300 (306)
Q Consensus 296 ~k~~~ 300 (306)
++..-
T Consensus 80 a~~~~ 84 (91)
T 2lxi_A 80 SDPKP 84 (91)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 97653
No 139
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=126.29 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
..++|||+|||.++++++|+++|+.||.|.+|+|.. .+|||||+|.+.++|.+||..|||..|.|. +++| |++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHV-PLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSS-BCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCe-EEEEEECCC
Confidence 368999999999999999999999999999999874 448999999999999999999999999954 7999 9875
No 140
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.4e-17 Score=121.66 Aligned_cols=77 Identities=19% Similarity=0.437 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||.++++++|+++|+.|| |.+|+|+.+.. +|||||+|.+.++|.+|| .|||..|.| ..|+| |
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~ 89 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD-RSLRVDI 89 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT-EECEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC-eEEEEEE
Confidence 3578999999999999999999999996 99999997543 489999999999999999 999999995 47999 9
Q ss_pred eeCCc
Q 021857 296 IQYPF 300 (306)
Q Consensus 296 ~k~~~ 300 (306)
++..-
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 87643
No 141
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=125.03 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCc----eEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGF----KQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i----~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..++++|||+|||.++|+++|+++|+.||.| ..+++.....+|||||+|.+.++|.+||+.|||..|. +..|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY-GKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS-SCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEE
Confidence 4468999999999999999999999999998 6777775555699999999999999999999999998 558999
Q ss_pred EeeCCcc
Q 021857 295 RIQYPFC 301 (306)
Q Consensus 295 ~~k~~~~ 301 (306)
|++..-.
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9986543
No 142
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=124.71 Aligned_cols=75 Identities=15% Similarity=0.344 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--ee----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--~~----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
.+.++|||+|||.++|+++|+++|+.| |.|.. +. +.+|||||+|.+.++|++|++.|+|..+. |+.|
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l 99 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKI 99 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGT----CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhc----CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 568999999999999999999999999 87733 32 24799999999999999999999999998 8999
Q ss_pred EEEEcccc
Q 021857 121 HTEMAKKN 128 (306)
Q Consensus 121 ~V~~a~~~ 128 (306)
+|+|++.+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999654
No 143
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.3e-17 Score=124.03 Aligned_cols=80 Identities=25% Similarity=0.380 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCCceEEEEEecC-CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 220 NPPCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQE-RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~----~~F~~~G~i~~vkl~~~~-~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
.+++++|||+|||.++++++|+ ++|+.||.|.+|++...+ .+|||||+|.+.++|.+|++.|||..|. +..++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY-DKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET-TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC-CcEEEE
Confidence 3468999999999999999999 999999999999997422 2489999999999999999999999998 458999
Q ss_pred -EeeCCc
Q 021857 295 -RIQYPF 300 (306)
Q Consensus 295 -~~k~~~ 300 (306)
|++.+-
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 998753
No 144
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.3e-17 Score=118.84 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=65.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
++.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 86 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKY----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF---GR 86 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTT----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET---TE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC---Cc
Confidence 467899999999999999999999999 8885542 23699999999999999999999999998 89
Q ss_pred eEEEEEcc
Q 021857 119 VLHTEMAK 126 (306)
Q Consensus 119 ~i~V~~a~ 126 (306)
.|+|+|++
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999985
No 145
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=119.70 Aligned_cols=72 Identities=11% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhhccCCCceEEEEEecC--CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESI------NEEELRGLFSAQPGFKQMKVLRQE--RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~------t~e~L~~~F~~~G~i~~vkl~~~~--~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
+++|||+|||..+ ++++|+++|+.||.|.+|++.... .+|||||+|.+.++|.+|++.|||..|.|.++++|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 779999999999999999988432 24999999999999999999999999996645654
No 146
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.7e-17 Score=119.71 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=69.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 77 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ---G 77 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3568999999999999999999999999 9885552 13599999999999999999999999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|.|++.+..
T Consensus 78 ~~l~V~~a~~~~~ 90 (99)
T 1whw_A 78 RMLHVLPSTIKKE 90 (99)
T ss_dssp CEEEEEECCCCST
T ss_pred cEEEEEEcCCCcc
Confidence 9999999976643
No 147
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=6e-17 Score=120.21 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 73 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG---SRF 73 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 46899999999999999999999999 9885552 22699999999999999999999999998 899
Q ss_pred EEEEEccccch
Q 021857 120 LHTEMAKKNLF 130 (306)
Q Consensus 120 i~V~~a~~~~~ 130 (306)
|+|+|++.+..
T Consensus 74 l~V~~a~~~~~ 84 (96)
T 2x1f_A 74 LKCGYSSNSDI 84 (96)
T ss_dssp CEEEECSCSSG
T ss_pred EEEEEcCCCCC
Confidence 99999977654
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=8.5e-17 Score=122.49 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=68.5
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 220 NPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~-~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
...+++|||+|||.+ +++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..|.| ..|+| |++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~ 98 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH----KGYAFVQYSNERHARAAVLGENGRVLAG-QTLDINMAG 98 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE----TTEEEEECSSSHHHHHHHHHHTTCEETT-EECCEEESC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEECC
Confidence 335789999999999 9999999999999999999993 3899999999999999999999999994 57999 998
Q ss_pred CCc
Q 021857 298 YPF 300 (306)
Q Consensus 298 ~~~ 300 (306)
.+-
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 149
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.3e-17 Score=121.12 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..|. |+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 85 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY---GK 85 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS---SC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC---Ce
Confidence 567999999999999999999999999 9885552 23699999999999999999999999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|+|.|++.+..
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 999999966543
No 150
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=3.1e-17 Score=138.93 Aligned_cols=77 Identities=12% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 221 PPCNTLFIGNLG-ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 221 ~~~~tLfV~NLp-~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
+++++|||+||+ +.+|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++||+.|||..|.| ..|+| |++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFG-QKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECC-ceEEEEEccC
Confidence 357899999999 89999999999999999999999964 45999999999999999999999999995 57999 9975
Q ss_pred C
Q 021857 299 P 299 (306)
Q Consensus 299 ~ 299 (306)
.
T Consensus 80 ~ 80 (205)
T 3tyt_A 80 P 80 (205)
T ss_dssp S
T ss_pred C
Confidence 3
No 151
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=117.61 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHh-cCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDAL-QEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l-~g~~~~~~~g~~i~V~ 123 (306)
.+.++|||+|||.++|+++|+++|+.| |.|..+ ..+||||||+|.+.++|++|++.| +|..+. |+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~---g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVN---GRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEET---TEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeEC---CCEEEEE
Confidence 457899999999999999999999999 988554 456899999999999999999998 999998 8999999
Q ss_pred Ecc
Q 021857 124 MAK 126 (306)
Q Consensus 124 ~a~ 126 (306)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 152
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=118.64 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 76 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GR 76 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---Ce
Confidence 467899999999999999999999999 8885442 12699999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 021857 119 VLHTEMAKKN 128 (306)
Q Consensus 119 ~i~V~~a~~~ 128 (306)
.|+|+|++.+
T Consensus 77 ~l~v~~a~~k 86 (87)
T 3bs9_A 77 QIRTNWATRK 86 (87)
T ss_dssp ECEEEEEC--
T ss_pred EEEEEecCCC
Confidence 9999999654
No 153
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.8e-17 Score=118.46 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~ 126 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++-.++||||+|.+.++|++|++.|||..+. |+.|+|+|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVK---GKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEET---TEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEECC
Confidence 568999999999999999999999999 999877766889999999999999999999999998 8999999996
Q ss_pred ccc
Q 021857 127 KNL 129 (306)
Q Consensus 127 ~~~ 129 (306)
...
T Consensus 80 ~~~ 82 (90)
T 2dnp_A 80 KGQ 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 154
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=3.6e-16 Score=121.60 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC---CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~---~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.++++|||+|||.++++++|+++|+.||.|++|+|+.+. .+|||||+|.+.++|.+|++.|||..|.| ..++| |+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG-RPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEEe
Confidence 457899999999999999999999999999999998654 24999999999999999999999999985 47999 99
Q ss_pred eCCccc
Q 021857 297 QYPFCC 302 (306)
Q Consensus 297 k~~~~~ 302 (306)
..+...
T Consensus 112 ~~~~~~ 117 (124)
T 2kt5_A 112 ASQIDL 117 (124)
T ss_dssp CCTTCC
T ss_pred CCCCCC
Confidence 876543
No 155
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=119.02 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 84 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---G 84 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT----SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET---T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3568999999999999999999999999 8885442 22599999999999999999999999998 8
Q ss_pred CeEEEEEccc
Q 021857 118 SVLHTEMAKK 127 (306)
Q Consensus 118 ~~i~V~~a~~ 127 (306)
+.|+|+|++.
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999864
No 156
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=124.59 Aligned_cols=75 Identities=28% Similarity=0.368 Sum_probs=69.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCCc
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYPF 300 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~~ 300 (306)
++|||+|||.++|+++|+++|+.||.|.+|+++.+ .+|||||+|.+.++|.+|++.|||..|.|. .++| |++..-
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGS-RVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSC-CCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCc-EEEEEEccCCC
Confidence 47999999999999999999999999999999975 559999999999999999999999999955 6999 987754
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=5.6e-17 Score=131.12 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe----eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~----~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
....+|||+||++.+|+++|+++|++| |.|.++ +..+|||||+|.+.++|++|++.|||..|+. .|+.|+|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~f----G~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V 118 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRI 118 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHH----SCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEE
Confidence 346789999999999999999999999 988554 2346899999999999999999999999961 0399999
Q ss_pred EEccccch
Q 021857 123 EMAKKNLF 130 (306)
Q Consensus 123 ~~a~~~~~ 130 (306)
+|++.+..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99987654
No 158
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=121.11 Aligned_cols=76 Identities=26% Similarity=0.377 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
.+.++|||+|||+++|+++|+++|+.| |.| +.+...||||||+|.+.++|++|++.|+|..|. |+.|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY----GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR---GKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT----CCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBT---TBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeC---CceEEEEE
Confidence 467899999999999999999999999 887 444567899999999999999999999999998 89999999
Q ss_pred ccccc
Q 021857 125 AKKNL 129 (306)
Q Consensus 125 a~~~~ 129 (306)
++.+.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97654
No 159
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=3.6e-17 Score=128.30 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
..++.++|||+|||+++|+++|+++|+.| |.|+.++ ..+|||||+|.+.++|++|++.|||..|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~--- 114 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--- 114 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTT----SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 34678999999999999999999999999 8885542 23699999999999999999999999998
Q ss_pred CCeEEEEEcccc
Q 021857 117 KSVLHTEMAKKN 128 (306)
Q Consensus 117 g~~i~V~~a~~~ 128 (306)
|+.|+|+|++.+
T Consensus 115 g~~l~V~~a~~~ 126 (129)
T 2kxn_B 115 GRRIRVDFSITK 126 (129)
T ss_dssp SSCCEESCCSSS
T ss_pred CEEEEEEEecCC
Confidence 899999998654
No 160
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=118.16 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE---EEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ---VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i---v~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
...++|||+|||+++|+++|+++|+.| |.| +.....+|||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~ 89 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL----GSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG---TDTLRVA 89 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT----TCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS---SSCCEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc----CCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEE
Confidence 457899999999999999999999999 665 222456899999999999999999999999998 8999999
Q ss_pred Ecccc
Q 021857 124 MAKKN 128 (306)
Q Consensus 124 ~a~~~ 128 (306)
+++.+
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99665
No 161
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=119.59 Aligned_cols=78 Identities=14% Similarity=0.352 Sum_probs=69.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ +.+|||||+|.+.++|++|++.|+|..|. |+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 84 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRK 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT----SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 3567999999999999999999999999 8885542 23799999999999999999999999998 899
Q ss_pred EEEEEccccch
Q 021857 120 LHTEMAKKNLF 130 (306)
Q Consensus 120 i~V~~a~~~~~ 130 (306)
|+|+|++.+..
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cq3_A 85 IEVNNATARVM 95 (103)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEcccCCC
Confidence 99999976643
No 162
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=119.01 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
++.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 75 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA---GR 75 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS---SS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC---Cc
Confidence 467899999999999999999999999 8885542 23699999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|+|++.+.
T Consensus 76 ~l~V~~a~~~~ 86 (95)
T 2dnz_A 76 PMRVGHVTERL 86 (95)
T ss_dssp CCEEEESSCCC
T ss_pred EEEEEEccccc
Confidence 99999996654
No 163
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.3e-17 Score=122.61 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 46 ~~~~~~LfV~nLp~-~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
.++.++|||+|||+ ++|+++|+++|+.| |.|..++-.+|||||+|.+.++|++|++.|+|..+. |+.|+|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNF---GKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCB---TTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeC---CcEEEEEE
Confidence 35789999999998 99999999999999 988666556899999999999999999999999998 89999999
Q ss_pred ccccch
Q 021857 125 AKKNLF 130 (306)
Q Consensus 125 a~~~~~ 130 (306)
++.+..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 976654
No 164
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=121.76 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcc-CCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCce-eCCCCceeE-
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSA-QPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAV-IPSSGSVGM- 294 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~-~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~-i~~~~~~~i- 294 (306)
.+.++|||+|||.++|+++|+++|+. ||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||.. |.| ..++|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g-~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS-KPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS-SCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC-EeEEEE
Confidence 35788999999999999999999999 99999999997532 3999999999999999999999999 885 47999
Q ss_pred EeeCCc
Q 021857 295 RIQYPF 300 (306)
Q Consensus 295 ~~k~~~ 300 (306)
|++..-
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 886543
No 165
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=123.28 Aligned_cols=75 Identities=9% Similarity=0.189 Sum_probs=67.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||. +||..|.|. .++| +++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr-~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKET-DLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT-TCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCE-EEEEEEch
Confidence 468999999999999999999999999999999996432 4999999999999999999 899999955 7888 765
Q ss_pred C
Q 021857 298 Y 298 (306)
Q Consensus 298 ~ 298 (306)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.6e-17 Score=119.47 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~----~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+++|||+|||+++|+++|+ ++|+.| |.|..++ ..||||||+|.+.++|++|++.|||..+. |
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~---g 79 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG---S 79 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET---T
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 457899999999999999999 999999 9885553 12899999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|++++...
T Consensus 80 r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 KKILVSLATGAS 91 (96)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEEcCCCC
Confidence 999999996553
No 167
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=123.77 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=67.4
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHhhccCCCceEEEEEecC--CcceEEEEECCHHHHHHHHHHhCCceeCCCCcee
Q 021857 222 PCNTLFIGNLGESI------NEEELRGLFSAQPGFKQMKVLRQE--RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (306)
Q Consensus 222 ~~~tLfV~NLp~~~------t~e~L~~~F~~~G~i~~vkl~~~~--~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~ 293 (306)
..++|||+|||..+ ++++|+++|+.||.|.+|+|+... .+|||||+|.+.++|.+||..|||..|.|.+.++
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 46899999999999 789999999999999999998422 2499999999999999999999999999655799
Q ss_pred E-Eee
Q 021857 294 M-RIQ 297 (306)
Q Consensus 294 i-~~k 297 (306)
| |++
T Consensus 94 V~~a~ 98 (105)
T 2nlw_A 94 VNLFT 98 (105)
T ss_dssp EECSC
T ss_pred EEEcc
Confidence 9 775
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=125.84 Aligned_cols=76 Identities=11% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCcee-C---CCCceeE
Q 021857 221 PPCNTLFI--GNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI-P---SSGSVGM 294 (306)
Q Consensus 221 ~~~~tLfV--~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i-~---~~~~~~i 294 (306)
.++++||| +||++++|+++|+++|++||.|.+|.|.. .+|||||+|.+.++|.+|++.|||.+| . .+.++.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 35789999 77999999999999999999999999874 358999999999999999999999988 1 2456777
Q ss_pred -EeeC
Q 021857 295 -RIQY 298 (306)
Q Consensus 295 -~~k~ 298 (306)
|+++
T Consensus 101 ~~a~~ 105 (114)
T 2cq2_A 101 NFVEK 105 (114)
T ss_dssp EEESC
T ss_pred Eeccc
Confidence 8864
No 169
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=119.91 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEE-EEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMK-VLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vk-l~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
..++|||+|||.++++++|+++|+.||.|.+++ ++.+...+.|||+|.+.++|.+|+..|||..|.| ..++| |++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a~~~ 92 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN-FTLKVAYIPDE 92 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS-CBCEEEECCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcCcc
Confidence 468899999999999999999999999999995 7765555779999999999999999999999995 47999 88753
No 170
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=6e-17 Score=123.27 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.++++|||+|||.++|+++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+|+..|||..|.| ..++| |
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEE
Confidence 3578999999999999999999999999999999986432 4999999999999999999999999984 58999 8
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8754
No 171
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=123.80 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=65.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC-----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~-----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
....++|||+|||.++++++|+++|+.|| |.+|+|+.+. .+|||||+|.+.++|.+|| .|||..|.|. .++|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~-~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR-RIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB-CCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe-EEEE
Confidence 34579999999999999999999999999 9999998654 2499999999999999999 9999999954 7999
Q ss_pred -EeeC
Q 021857 295 -RIQY 298 (306)
Q Consensus 295 -~~k~ 298 (306)
|++.
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 8875
No 172
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=122.72 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=67.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
++.++|||+|||..+|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..+. |+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~---g~ 96 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA---GR 96 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTT----SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CE
Confidence 457899999999999999999999999 8884442 12599999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|++++.+.
T Consensus 97 ~l~V~~a~~k~ 107 (108)
T 2jrs_A 97 PMKVGHVTERT 107 (108)
T ss_dssp CCEEECSCSSC
T ss_pred EEEEEEcccCC
Confidence 99999997653
No 173
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=118.62 Aligned_cols=76 Identities=16% Similarity=0.309 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 87 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAH----GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK---ENI 87 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 567899999999999999999999999 8885442 12599999999999999999999999998 899
Q ss_pred EEEEEccccc
Q 021857 120 LHTEMAKKNL 129 (306)
Q Consensus 120 i~V~~a~~~~ 129 (306)
|+|.|++.+.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999996653
No 174
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.5e-17 Score=122.03 Aligned_cols=76 Identities=22% Similarity=0.244 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEec---CCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ---ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~---~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.+.++|||+|||.++|+++|+++|+.||.| +++.+ ..+|||||+|.+.++|.+||+.|||..|. +..|+| |+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-GRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET-TEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC-CeEEEEEEc
Confidence 358999999999999999999999999987 34432 23499999999999999999999999999 457999 99
Q ss_pred eCCc
Q 021857 297 QYPF 300 (306)
Q Consensus 297 k~~~ 300 (306)
+.+-
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 175
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.8e-17 Score=124.22 Aligned_cols=75 Identities=19% Similarity=0.343 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+|| .|||..|.| ..|+| |+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-VPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT-EEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-eEEEEEec
Confidence 468999999999999999999999999999999986432 489999999999999999 999999985 57999 87
Q ss_pred eC
Q 021857 297 QY 298 (306)
Q Consensus 297 k~ 298 (306)
+.
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 176
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=121.92 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
....++|||+|||.++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|++|++.|+|..|. |+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE---GHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CcEEEEE
Confidence 3568999999999999999999999999 988554 456899999999999999999999999998 8999999
Q ss_pred Eccccch
Q 021857 124 MAKKNLF 130 (306)
Q Consensus 124 ~a~~~~~ 130 (306)
|++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9976654
No 177
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.8e-17 Score=120.61 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 81 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKY----GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD---G 81 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHH----SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT---S
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3568999999999999999999999999 8774331 23699999999999999999999999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|+|++.+..
T Consensus 82 ~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 82 RQIRVDQAGKSSD 94 (102)
T ss_dssp CCCEEEEEECCCC
T ss_pred eEEEEEECCCCCC
Confidence 9999999976654
No 178
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=118.67 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++ |+|..|. |+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~ 79 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM---GK 79 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS---SC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC---Ce
Confidence 567999999999999999999999999 8885542 246999999999999999999 9999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|+|.|++.+..
T Consensus 80 ~l~V~~a~~~~~ 91 (99)
T 2dgs_A 80 KVEVKRAEPRDS 91 (99)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999976543
No 179
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.4e-17 Score=123.05 Aligned_cols=80 Identities=11% Similarity=0.221 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCce--------EEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeC
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFK--------QMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~--------~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~ 287 (306)
..+.++|||+|||.++|+++|+++|+.||.|. .|+|+.+.. +|||||+|.+.++|.+||+.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34579999999999999999999999999998 599986532 489999999999999999999999999
Q ss_pred CCCceeE-EeeCCc
Q 021857 288 SSGSVGM-RIQYPF 300 (306)
Q Consensus 288 ~~~~~~i-~~k~~~ 300 (306)
| ..|+| |++..-
T Consensus 92 g-~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 G-SKLKVSLARKKP 104 (113)
T ss_dssp T-EECEEECSSCCC
T ss_pred C-CEEEEEECCCCC
Confidence 4 57999 887643
No 180
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.1e-17 Score=120.80 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=70.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 44 ~~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
....+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 82 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPF----GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA---T 82 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTT----SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS---S
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC---C
Confidence 344678999999999999999999999999 8885442 23699999999999999999999999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|.|++.+..
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 83 KPLYVALAQRKEE 95 (103)
T ss_dssp SBCEEEECSSCCC
T ss_pred cEEEEEEeccccc
Confidence 9999999976643
No 181
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.8e-17 Score=123.37 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=69.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
..++|||+|||+++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|++|++.|||..|. |+.|+|+|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFH---HVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSS---SSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC---CeEEEEEEC
Confidence 47899999999999999999999999 999655 357899999999999999999999999998 899999999
Q ss_pred cccch
Q 021857 126 KKNLF 130 (306)
Q Consensus 126 ~~~~~ 130 (306)
+....
T Consensus 82 ~~~~~ 86 (111)
T 1whx_A 82 PIGVF 86 (111)
T ss_dssp ETTTT
T ss_pred CCCcc
Confidence 76543
No 182
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=9.1e-17 Score=131.37 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
++++|||+|||..+++++|+++|+.||.|..|+|+.+.. +|||||+|.+.++|.+||..|||..|.| ..|+| |+
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 149 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQVDWC 149 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEe
Confidence 478999999999999999999999999999999996532 4999999999999999999999999984 57999 87
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 150 ~~~ 152 (165)
T 1rk8_A 150 FVK 152 (165)
T ss_dssp EEC
T ss_pred cCC
Confidence 653
No 183
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=120.06 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEE---Eee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV---NYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv---~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.+.++|||+|||+++|+++|+++|+.| |.|. .+. ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 75 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAF----GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---N 75 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTT----SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 568999999999999999999999999 7763 331 23699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|+|++.+.
T Consensus 76 ~~l~v~~a~~~~ 87 (96)
T 1x5t_A 76 RPITVSYAFKKD 87 (96)
T ss_dssp EECEEEESCCCC
T ss_pred EEEEEEEecccC
Confidence 999999997654
No 184
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.9e-17 Score=121.54 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
++.++|||+|||.++++++|+++|+.||.|..++++.+.. +|||||+|.+.++|.+||+.|||..|.| .+++| |
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-r~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC-cEEEEEe
Confidence 3468999999999999999999999999998777775432 3999999999999999999999999995 47999 8
Q ss_pred ee
Q 021857 296 IQ 297 (306)
Q Consensus 296 ~k 297 (306)
++
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 185
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=8.9e-17 Score=115.81 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=65.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
..+|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |+.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l 73 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPL 73 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC---CcEE
Confidence 3689999999999999999999999 8885442 12699999999999999999999999998 8999
Q ss_pred EEEEcccc
Q 021857 121 HTEMAKKN 128 (306)
Q Consensus 121 ~V~~a~~~ 128 (306)
+|+|++.+
T Consensus 74 ~v~~a~~~ 81 (83)
T 3md1_A 74 RINWAAKL 81 (83)
T ss_dssp EEEECCCC
T ss_pred EEEecCcC
Confidence 99999654
No 186
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=7.8e-17 Score=117.71 Aligned_cols=75 Identities=17% Similarity=0.335 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|+ .|||..|.| ..++| +++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG-RQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT-EECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC-cEEEEEEcc
Confidence 58999999999999999999999999999999986532 489999999999999999 999999994 47999 987
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
.+
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 187
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=119.71 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--C-------CcCeEEEEeCCHHHHHHHHHHh-cCceeCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G-------EKPMGFALFSTAQLAVAAKDAL-QEMIFDAE 115 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--~-------~kg~aFV~F~~~~~A~~Al~~l-~g~~~~~~ 115 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ . .+|||||+|.+.++|++|++.| ||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~-- 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY-- 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC--
Confidence 3568999999999999999999999999 9885542 1 2699999999999999999999 999998
Q ss_pred CCCeEEEEEccccch
Q 021857 116 TKSVLHTEMAKKNLF 130 (306)
Q Consensus 116 ~g~~i~V~~a~~~~~ 130 (306)
|+.|+|+|++.+..
T Consensus 86 -g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 -GRRLVLEWADSEVT 99 (107)
T ss_dssp -SCBCEEEECCCCCC
T ss_pred -CCEEEEEeCCCCCC
Confidence 89999999976643
No 188
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=8.7e-17 Score=125.42 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.++++|||+|||.++|+++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| ..|+| |
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-QPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS-SBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEEEE
Confidence 3578999999999999999999999999999999986431 4899999999999999999999999985 57999 8
Q ss_pred eeCC
Q 021857 296 IQYP 299 (306)
Q Consensus 296 ~k~~ 299 (306)
++..
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8643
No 189
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=9.7e-17 Score=122.27 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcC-cE--EEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-SQ--VNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g-~i--v~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
..++|||+|||+++|+++|+++|+.| | .| +.+ +..+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~----G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~---Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN----SLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR---GSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH----TCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET---TEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 46899999999999999999999999 8 66 333 245799999999999999999999999998 899999
Q ss_pred EEcccc
Q 021857 123 EMAKKN 128 (306)
Q Consensus 123 ~~a~~~ 128 (306)
++++..
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998543
No 190
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=115.36 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=66.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------C-CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~-~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
..++|||+|||+++|+++|+++|+.| |.|..++ + .+|||||+|.+.++|++|++.|||..+. |+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 75 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID---GQ 75 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC---Ce
Confidence 46899999999999999999999999 9885542 1 5799999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 021857 119 VLHTEMAKKN 128 (306)
Q Consensus 119 ~i~V~~a~~~ 128 (306)
.|+|+++...
T Consensus 76 ~l~v~~a~~~ 85 (88)
T 4a8x_A 76 EITATAVLAP 85 (88)
T ss_dssp ECEEEEECCC
T ss_pred EEEEEECCCC
Confidence 9999998543
No 191
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=120.00 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 83 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD---GR 83 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT---TB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC---Cc
Confidence 467999999999999999999999999 9885552 23699999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|+|++...
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999997654
No 192
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=116.05 Aligned_cols=75 Identities=9% Similarity=0.220 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..++|||+|||.++++++|+++|+.| .|.+|+|+.+.. +|||||+|.+.++|.+||+ |||..|.|. .++| +++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr-~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR-YIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE-EEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc-EEEEEECC
Confidence 47899999999999999999999999 999999997633 3899999999999999999 999999954 7999 887
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 193
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=1e-16 Score=117.90 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee----C--CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~----~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ + .+|||||+|.+.++|++|++.|+|..+. |+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC----GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS---GREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT----SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT---TBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEE
Confidence 568999999999999999999999999 8885442 1 3699999999999999999999999998 8999
Q ss_pred EEEEccccc
Q 021857 121 HTEMAKKNL 129 (306)
Q Consensus 121 ~V~~a~~~~ 129 (306)
+|+|++...
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 999996654
No 194
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=121.71 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++|+++|+++|+.||.|++|+|+.+. .+|||||+|.+.++|.+||+.||+ .|. +.+|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~-g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID-GRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET-TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC-CEEEEEE
Confidence 3468999999999999999999999999999999998653 248999999999999999999999 788 458999
Q ss_pred EeeCC
Q 021857 295 RIQYP 299 (306)
Q Consensus 295 ~~k~~ 299 (306)
|++..
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98653
No 195
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.6e-16 Score=115.58 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++. +|..|.| ..++| +
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g-~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDG-RVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETT-EEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECC-EEEEEEe
Confidence 4578999999999999999999999999999999986543 49999999999999999965 8888884 47887 6
Q ss_pred e
Q 021857 296 I 296 (306)
Q Consensus 296 ~ 296 (306)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 196
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=119.61 Aligned_cols=77 Identities=25% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhc------Ccee
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQ------EMIF 112 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~------g~~~ 112 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|| |..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF----GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 568999999999999999999999999 9885542 236999999999999999999999 9999
Q ss_pred CCCCCCeEEEEEccccch
Q 021857 113 DAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 113 ~~~~g~~i~V~~a~~~~~ 130 (306)
. |+.|+|.|++.+..
T Consensus 89 ~---g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 D---GRQLKVDLAVTRDE 103 (111)
T ss_dssp S---SCEEEEECCCCCCC
T ss_pred c---CEEEEEEECCCCcc
Confidence 8 89999999976643
No 197
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=119.51 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=68.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 81 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---G 81 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTT----SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3568999999999999999999999999 8774332 24699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|+|++.+.
T Consensus 82 ~~l~V~~a~~~~ 93 (102)
T 2cqb_A 82 RTIRVNLAKPMR 93 (102)
T ss_dssp EEEEEEECCCCC
T ss_pred cEEEEEeCCCCC
Confidence 999999997654
No 198
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-16 Score=116.76 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.+.++|||+|| ++|+++|+++|+.||.|.+|+|. ..+|||||+|.+.++|.+||..|||..|. +..++| |++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE-SVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET-TEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEECCCC
Confidence 35789999996 89999999999999999999996 34589999999999999999999999998 458999 98765
Q ss_pred c
Q 021857 300 F 300 (306)
Q Consensus 300 ~ 300 (306)
-
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 199
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=2.3e-16 Score=121.03 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..|. |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 84 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---G 84 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET---T
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3568999999999999999999999999 8885442 12599999999999999999999999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|+|++.+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 85 RQIRTNWATRKPP 97 (115)
T ss_dssp EECEEEESSCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999976643
No 200
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=121.24 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG-RALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-SCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEeC
Confidence 468899999999999999999999999999999996532 4999999999999999999999999985 47999 98
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 764
No 201
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=2.2e-16 Score=119.00 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--C-----CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--~-----~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ . .+|||||+|.+.++|++|++.|||..+....++.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF----GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 468999999999999999999999999 8885442 1 2699999999999999999999999997211199
Q ss_pred EEEEEccccch
Q 021857 120 LHTEMAKKNLF 130 (306)
Q Consensus 120 i~V~~a~~~~~ 130 (306)
|+|.|++.+..
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999976643
No 202
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-16 Score=116.22 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|++|++.|||..+.. .|+.|+|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGG-PDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSS-SSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCC-CCcEEEEEE
Confidence 567999999999999999999999999 998554 4568999999999999999999999998851 159999999
Q ss_pred cccc
Q 021857 125 AKKN 128 (306)
Q Consensus 125 a~~~ 128 (306)
++.+
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9665
No 203
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.8e-17 Score=119.44 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----------GEKPMGFALFSTAQLAVAAKDALQEMIFDAE 115 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~ 115 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKV----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD-- 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC--
Confidence 568999999999999999999999999 8884431 23599999999999999999999999998
Q ss_pred CCCeEEEEEccccc
Q 021857 116 TKSVLHTEMAKKNL 129 (306)
Q Consensus 116 ~g~~i~V~~a~~~~ 129 (306)
|+.|+|+|++.+.
T Consensus 77 -g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 77 -GHKLEVRISERAT 89 (98)
T ss_dssp -TEECEEECSSCSS
T ss_pred -CeEEEEEEccCCC
Confidence 8999999996654
No 204
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=2.3e-16 Score=117.16 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~----~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.+.++|||+|||.++|+++|+ ++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 78 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY---D 78 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC---C
Confidence 568999999999999999999 888888 9986653 24699999999999999999999999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|+|++.+..
T Consensus 79 ~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 KPMRIQYAKTDSD 91 (97)
T ss_dssp EECEEEECSSCCT
T ss_pred cEEEEEEccCCCc
Confidence 9999999977654
No 205
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=118.75 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=64.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--------e---e-----CCcCeEEEEeCCHHHHHHHHHHhcCc
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--------Y---K-----GEKPMGFALFSTAQLAVAAKDALQEM 110 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--------~---~-----~~kg~aFV~F~~~~~A~~Al~~l~g~ 110 (306)
.+.++|||+|||+++|+++|+++|+.| |.|.. + + ..+|||||+|.+.++|++|++.|||.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 357899999999999999999999999 66543 2 1 12699999999999999999999999
Q ss_pred eeCCCCCCeEEEEEcc
Q 021857 111 IFDAETKSVLHTEMAK 126 (306)
Q Consensus 111 ~~~~~~g~~i~V~~a~ 126 (306)
.+. |+.|+|++|+
T Consensus 87 ~~~---g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFS---GNPIKVSFAT 99 (99)
T ss_dssp BSS---SSBCEEEECC
T ss_pred EeC---CcEEEEEecC
Confidence 998 8999999984
No 206
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=118.83 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 85 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA----TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE---GRAIRL 85 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC----SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET---TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC---CeEEEE
Confidence 568999999999999999999999999 8874332 24799999999999999999999999998 899999
Q ss_pred EEccccc
Q 021857 123 EMAKKNL 129 (306)
Q Consensus 123 ~~a~~~~ 129 (306)
+|++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9996654
No 207
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.7e-17 Score=122.94 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
...++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|+ .|||..|. |+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~ 94 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV----GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL---GV 94 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC---Ce
Confidence 457899999999999999999999999 8885542 23699999999999999999 89999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|+|+|++.+..
T Consensus 95 ~l~V~~a~~~~~ 106 (114)
T 2cq4_A 95 PIIVQASQAEKN 106 (114)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEEEecCCCcc
Confidence 999999976544
No 208
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=120.28 Aligned_cols=77 Identities=29% Similarity=0.354 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 84 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF----GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD---H 84 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT----CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC---C
Confidence 4578999999999999999999999999 8885442 12599999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|.|++.+.
T Consensus 85 ~~l~v~~a~~~~ 96 (103)
T 2cq0_A 85 LILNVEWAKPST 96 (103)
T ss_dssp EECEEEESSCCC
T ss_pred cEEEEEECCCCC
Confidence 999999997654
No 209
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=1.7e-16 Score=123.63 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---eCCcCe-EEEEeCCHHHHHHHHHHhcCceeCCCCC--CeE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPM-GFALFSTAQLAVAAKDALQEMIFDAETK--SVL 120 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~~~kg~-aFV~F~~~~~A~~Al~~l~g~~~~~~~g--~~i 120 (306)
...-+|||+||++.+|+++|+++|++| |.|.++ +..+|+ |||+|.+.++|++|++.|||..|+ | +.|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~y----G~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~---g~~~~L 98 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY---NACCTL 98 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTS----SCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE---TTEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCc----CCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec---CCCcEE
Confidence 345678899999999999999999999 988554 345677 999999999999999999999998 5 899
Q ss_pred EEEEccccch
Q 021857 121 HTEMAKKNLF 130 (306)
Q Consensus 121 ~V~~a~~~~~ 130 (306)
+|+|++....
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999987754
No 210
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=2e-16 Score=119.54 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..||||||+|.+.++|++|++.|||..+....|+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF----GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH----SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 568999999999999999999999999 8874442 2469999999999999999999999987222289
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|.|++.+.
T Consensus 87 ~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 PIQVKPADSES 97 (106)
T ss_dssp CCEEEECCCCS
T ss_pred eEEEEECCccc
Confidence 99999997654
No 211
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=119.74 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.++++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 93 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQ 93 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC---Cc
Confidence 467999999999999999999999999 8885442 12699999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 021857 119 VLHTEMAKKN 128 (306)
Q Consensus 119 ~i~V~~a~~~ 128 (306)
.|+|+|++.+
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 9999999654
No 212
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2.3e-16 Score=127.67 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++|+++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|.+||+.|||..|. +..|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD-DRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET-TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEE
Confidence 34679999999999999999999999999999999986542 389999999999999999999999998 458999
Q ss_pred EeeCC
Q 021857 295 RIQYP 299 (306)
Q Consensus 295 ~~k~~ 299 (306)
|++.+
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99754
No 213
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=129.23 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--CceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G--~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| ..++|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G-r~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG-EKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT-EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-eEeEEE
Confidence 468999999999999999999999999 999999986532 3999999999999999999999999995 47999
Q ss_pred EeeC
Q 021857 295 RIQY 298 (306)
Q Consensus 295 ~~k~ 298 (306)
|++.
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8853
No 214
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=118.94 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCc-CeEEEEeCCHHHHHHHHHHhcCceeCCCCC-----CeEE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETK-----SVLH 121 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~k-g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g-----~~i~ 121 (306)
..++|||+|||+++|+++|+++|+.| |.|+.++-.+ |||||+|.+.++|++|++.|||..|. | +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEE---CTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCcc---CCcCcceEEE
Confidence 47899999999999999999999999 9986654222 99999999999999999999999998 8 9999
Q ss_pred EEEccccc
Q 021857 122 TEMAKKNL 129 (306)
Q Consensus 122 V~~a~~~~ 129 (306)
|++++.+.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99997654
No 215
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=118.20 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 86 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQA----GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY---GRP 86 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CCE
Confidence 567999999999999999999999999 8885542 12699999999999999999999999998 899
Q ss_pred EEEEEccc
Q 021857 120 LHTEMAKK 127 (306)
Q Consensus 120 i~V~~a~~ 127 (306)
|+|+|++.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999853
No 216
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=118.26 Aligned_cols=77 Identities=25% Similarity=0.315 Sum_probs=67.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
.+.++|||+|||+++|+++|+++|+.| +.+..+. ..+|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID---GNKVT 85 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC---CeEEE
Confidence 568999999999999999999999988 6664432 23699999999999999999999999998 89999
Q ss_pred EEEccccch
Q 021857 122 TEMAKKNLF 130 (306)
Q Consensus 122 V~~a~~~~~ 130 (306)
|+|++.+..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999976643
No 217
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=119.57 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=69.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||.. ||..|.|. .|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~-~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR-NIDPK 90 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE-EEBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE-EEEEE
Confidence 34579999999999999999999999999999999997532 38999999999999999999 99999954 7999
Q ss_pred EeeCC
Q 021857 295 RIQYP 299 (306)
Q Consensus 295 ~~k~~ 299 (306)
|++..
T Consensus 91 ~a~~~ 95 (105)
T 2dh8_A 91 PCTPR 95 (105)
T ss_dssp CSCCS
T ss_pred EccCC
Confidence 88654
No 218
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=120.95 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=63.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.+ |..|. |
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~---g 93 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD---S 93 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC---C
Confidence 3568999999999999999999999999 8885542 23699999999999999999976 57888 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|+++..+.
T Consensus 94 ~~l~V~~a~~~~ 105 (109)
T 2rs2_A 94 KTIDPKVAFPRR 105 (109)
T ss_dssp EEEEEEECCCCC
T ss_pred EEEEEEEccCCC
Confidence 999999997654
No 219
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=5e-17 Score=124.93 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
..+|||+|||+++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+||+.|||..|.|. .++|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr-~~~~ 83 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSH-EGET 83 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCT-TSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCc-Eeee
Confidence 678999999999999999999999999999999864 8999999999999999999999999965 5443
No 220
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=121.64 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=67.0
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCcee-C-CCCCCe
Q 021857 46 HDEVRTIFI--TGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIF-D-AETKSV 119 (306)
Q Consensus 46 ~~~~~~LfV--~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~-~-~~~g~~ 119 (306)
..+.++||| +||++++|+++|+++|++| |.|..+ ...||||||+|.+.++|++|++.|||..+ . -..|++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 356889999 7799999999999999999 988554 45689999999999999999999999987 1 001789
Q ss_pred EEEEEcccc
Q 021857 120 LHTEMAKKN 128 (306)
Q Consensus 120 i~V~~a~~~ 128 (306)
|+|.|++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998543
No 221
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=3e-16 Score=119.38 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 96 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQ 96 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---Cc
Confidence 567999999999999999999999999 9885552 12699999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|.|++.+.
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 99999996543
No 222
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=6.6e-17 Score=121.07 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCcee
Q 021857 47 DEVRTIFITGLPD------DVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (306)
Q Consensus 47 ~~~~~LfV~nLp~------~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~ 112 (306)
..+++|||+|||+ ++++++|+++|+.| |.|..++ .+||||||+|.+.++|++|++.|||..|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 4578999999999 99999999999999 9886552 2369999999999999999999999999
Q ss_pred CCCCC-CeEEEEEccccch
Q 021857 113 DAETK-SVLHTEMAKKNLF 130 (306)
Q Consensus 113 ~~~~g-~~i~V~~a~~~~~ 130 (306)
. | +.|+|.++.++..
T Consensus 80 ~---g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 80 D---LKHRLFLYTMKDVER 95 (100)
T ss_dssp S---SSCBCEEEESHHHHH
T ss_pred C---CCeEEEEEECchhhh
Confidence 8 8 9999999976543
No 223
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=9.1e-17 Score=126.33 Aligned_cols=77 Identities=14% Similarity=0.297 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceE--EEEEecC----CcceEEEEECCHHHHHHHHHHhCCc----eeCCCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--MKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGA----VIPSSG 290 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~--vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~----~i~~~~ 290 (306)
.++++|||+|||+++|+++|+++|+.||.|.. |+|+.+. .+|||||+|.+. +|.+|+..|||. .|.|.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr- 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK- 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE-
Confidence 45789999999999999999999999999977 9998655 249999999999 999999999999 99954
Q ss_pred ceeE-EeeCC
Q 021857 291 SVGM-RIQYP 299 (306)
Q Consensus 291 ~~~i-~~k~~ 299 (306)
.|+| |++..
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 7999 98754
No 224
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=118.21 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCC-ceEEEEEecCCcceEEEEECCHHHHHHHHHHhCC-ceeCCCCceeE-EeeC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG-AVIPSSGSVGM-RIQY 298 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~-i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG-~~i~~~~~~~i-~~k~ 298 (306)
+.++|||+|||.++|+++|+++|+.||. |..+.+.. +|||||+|.+.++|.+|++.||| ..|.| ..++| |++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~l~v~~a~~ 82 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELHG-KIMEVDYSVS 82 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEETT-EECEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeECC-EEEEEEEccC
Confidence 4788999999999999999999999999 66666642 48999999999999999999999 99984 58999 9876
Q ss_pred C
Q 021857 299 P 299 (306)
Q Consensus 299 ~ 299 (306)
.
T Consensus 83 ~ 83 (93)
T 2cqh_A 83 K 83 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 225
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=124.79 Aligned_cols=76 Identities=16% Similarity=0.317 Sum_probs=67.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++++++|+++|+.||.|++|+++.+. .+|||||+|.+.++|.+|++.|||..|.| ..|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT-EEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence 3458999999999999999999999999999999998652 24999999999999999999999999994 47888
Q ss_pred Ee
Q 021857 295 RI 296 (306)
Q Consensus 295 ~~ 296 (306)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 226
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-17 Score=121.65 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=63.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee----C-----CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~----~-----~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
...++|||+|||+++|+++|+++|+.| | |..++ . .+|||||+|.+.++|++|+ .|+|..|. |
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~---g 87 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---N 87 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSS----C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT---T
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC---C
Confidence 457999999999999999999999999 8 75442 1 2699999999999999999 89999998 8
Q ss_pred CeEEEEEcccc
Q 021857 118 SVLHTEMAKKN 128 (306)
Q Consensus 118 ~~i~V~~a~~~ 128 (306)
+.|+|++++.+
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999999655
No 227
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=118.01 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcC-ceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQE-MIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g-~~~~~~~g~~i~V~ 123 (306)
.+.++|||+|||+++|+++|+++|+.| |.|+.. ...+|||||+|.+.++|++|++.||| ..+. |+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR----KLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELH---GKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT----TCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEET---TEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeEC---CEEEEEE
Confidence 467899999999999999999999999 773211 13579999999999999999999999 8998 8999999
Q ss_pred Eccccc
Q 021857 124 MAKKNL 129 (306)
Q Consensus 124 ~a~~~~ 129 (306)
|++.+.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 228
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=120.65 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEe--e--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNY--K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~--~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.| +.+ . ..+|||||+|.+.++|++|++.|+|..|. |+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF----QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY---GK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH----HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS---SC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---Cc
Confidence 568999999999999999999999999 765 333 2 34799999999999999999999999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|+|+|++.+..
T Consensus 96 ~l~v~~a~~~~~ 107 (115)
T 2cpx_A 96 ILVIEFGKNKKQ 107 (115)
T ss_dssp BCEEEECCCCSC
T ss_pred EEEEEEccCCCC
Confidence 999999976543
No 229
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=3.3e-17 Score=120.05 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=65.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.+ |.+|+..|||..|.|. .++| |+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-TIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-SCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe-EEEEEEcCC
Confidence 5899999999999999999999999999999986532 499999999999 9999999999999954 7999 8876
Q ss_pred Cc
Q 021857 299 PF 300 (306)
Q Consensus 299 ~~ 300 (306)
+-
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 230
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=3.3e-16 Score=119.18 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 021857 47 DEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (306)
Q Consensus 47 ~~~~~LfV~nLp~~-~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a 125 (306)
...++|||+|||++ +|+++|+++|+.| |.|..++-.+|||||+|.+.++|++|++.|+|..|. |+.|+|+|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLA---GQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEET---TEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEC
Confidence 45789999999999 9999999999999 888555447899999999999999999999999998 899999999
Q ss_pred ccc
Q 021857 126 KKN 128 (306)
Q Consensus 126 ~~~ 128 (306)
+..
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 231
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=118.86 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
..+.++|||+|||.++++++|+++|+.||.|..+ ......+|||||+|.+.++|.+|++.|||..|.| ..++| |++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-RSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT-EEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEEcCC
Confidence 3457999999999999999999999999988777 2222234999999999999999999999999995 47999 9876
Q ss_pred C
Q 021857 299 P 299 (306)
Q Consensus 299 ~ 299 (306)
.
T Consensus 91 ~ 91 (96)
T 1fjc_A 91 K 91 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 232
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=1.2e-16 Score=116.66 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
..++|||+|||+++++++|+++|+.| .|.++++. ..+|||||+|.+.++|.+|++.|||..|.| .+++| |++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-KDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT-EEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC-cEEEEEEcCC
Confidence 36789999999999999999999999 99999996 345999999999999999999999999995 47999 8865
No 233
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=118.92 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=66.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEE-Eee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV-NYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv-~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
..+.++|||+|||+++|+++|+++|+.| |.|+ .++ ..+|||||+|.+.++|++|++.|||..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 78 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATM----GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP--- 78 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHT----TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES---
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC---
Confidence 3568999999999999999999999999 7654 331 23599999999999999999999999998
Q ss_pred CCe----EEEEEcccc
Q 021857 117 KSV----LHTEMAKKN 128 (306)
Q Consensus 117 g~~----i~V~~a~~~ 128 (306)
|+. |+|+|++..
T Consensus 79 g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 79 GATPAKRFKLNYATYS 94 (99)
T ss_dssp SCSSCEECCEEETTCC
T ss_pred CCCcceeEEEeecCCC
Confidence 788 999998654
No 234
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=116.88 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..++|||+|||+++|+++|+++|+.|| +++|+|+.+.. +|||||+|.+.++|.+|| .+||..|.+. .++| .+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr-~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHR-YVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSS-CCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCc-EEEEEECC
Confidence 478999999999999999999999999 45999986543 389999999999999999 5799999855 6888 766
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
.+
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 235
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=7e-17 Score=120.99 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEe----cCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLR----QERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~----~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++|+++|+++|+.||.|.. +++. ...+|||||+|.+.++|.+||+ |||..|.| ..++| |+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-NEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT-BCCEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC-cEEEEEEc
Confidence 5789999999999999999999999998776 3332 2335999999999999999999 99999994 57999 99
Q ss_pred eCCcccccC
Q 021857 297 QYPFCCFCC 305 (306)
Q Consensus 297 k~~~~~~~~ 305 (306)
+..-..+-|
T Consensus 93 ~~~~~~~g~ 101 (101)
T 1fj7_A 93 KGRDGTRGC 101 (101)
T ss_dssp SCCCCSSCC
T ss_pred CCCCCCCCC
Confidence 877666555
No 236
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=119.40 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=67.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEE--------Eee--------CCcCeEEEEeCCHHHHHHHHHHhcC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV--------NYK--------GEKPMGFALFSTAQLAVAAKDALQE 109 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv--------~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g 109 (306)
..+.++|||+|||+++|+++|+++|+.| |.|. .++ ..+|||||+|.+.++|++|++.|||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 3568999999999999999999999999 7664 221 2369999999999999999999999
Q ss_pred ceeCCCCCCeEEEEEccccch
Q 021857 110 MIFDAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 110 ~~~~~~~g~~i~V~~a~~~~~ 130 (306)
..|. |+.|+|.|++.+..
T Consensus 88 ~~~~---g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 88 KDFQ---GSKLKVSLARKKPP 105 (113)
T ss_dssp CEET---TEECEEECSSCCCC
T ss_pred CccC---CCEEEEEECCCCCC
Confidence 9998 89999999976543
No 237
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=117.21 Aligned_cols=76 Identities=20% Similarity=0.402 Sum_probs=64.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++|+++|+++|+.|+ .|+++.+.. +|||||+|.+.++|.+||+.|||..|.| ..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG-NKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEE
Confidence 34578999999999999999999999874 555654321 3899999999999999999999999995 47999
Q ss_pred EeeCC
Q 021857 295 RIQYP 299 (306)
Q Consensus 295 ~~k~~ 299 (306)
|++..
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98764
No 238
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=4.2e-16 Score=117.89 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=66.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.++|||+|||+.+|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|+|..|. |+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 99 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD---GRP 99 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcE
Confidence 568999999999999999999999999 8885442 23699999999999999999999999998 899
Q ss_pred EEEEEcc
Q 021857 120 LHTEMAK 126 (306)
Q Consensus 120 i~V~~a~ 126 (306)
|+|+|++
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999985
No 239
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=7.5e-16 Score=118.49 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--ee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.++.++|||+|||+++|+++|+++|+.| |.|.. +. ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~ 76 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKH----GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH---GK 76 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTS----SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS---SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CE
Confidence 3567899999999999999999999999 87733 32 23599999999999999999999999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|+|+|++....
T Consensus 77 ~l~V~~a~~~~~ 88 (116)
T 2fy1_A 77 AIKVEQAKKPSF 88 (116)
T ss_dssp BCEEEECCCSSC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 240
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=4.6e-17 Score=119.47 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=59.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcC--cEEEe---e-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEA--SQVNY---K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g--~iv~~---~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+|||+|||+++|+++|+++|+.| | .|..+ + .+||||||+|.+.++|++|++.|||..+. |+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~----G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~---gr~ 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQN 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT----TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS---SCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh----CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC---CEE
Confidence 589999999999999999999999 7 55222 1 23699999999999999999999999998 899
Q ss_pred EEEEEccccc
Q 021857 120 LHTEMAKKNL 129 (306)
Q Consensus 120 i~V~~a~~~~ 129 (306)
|+|.+++...
T Consensus 75 i~V~~~~~~~ 84 (90)
T 3p5t_L 75 PVVTPSNKLE 84 (90)
T ss_dssp CEECCC----
T ss_pred EEEEECCCCc
Confidence 9999986553
No 241
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=3.4e-16 Score=120.79 Aligned_cols=75 Identities=9% Similarity=0.094 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCC---ceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~---i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.. +|||||+|.+.++|.+||+ |||..|.+. .++|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr-~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHR-YIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE-EEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCe-EEEE
Confidence 35789999999999999999999999998 89999986543 3899999999999999999 999999854 7899
Q ss_pred -Eee
Q 021857 295 -RIQ 297 (306)
Q Consensus 295 -~~k 297 (306)
+++
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 764
No 242
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.5e-16 Score=118.32 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=66.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|++ .|. |
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~---g 85 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID---G 85 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC---C
Confidence 4568999999999999999999999999 9885542 2369999999999999999999998 787 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|+|++...
T Consensus 86 ~~l~V~~a~~~~ 97 (116)
T 2cqd_A 86 RKANVNLAYLGA 97 (116)
T ss_dssp EECEEEESTTTC
T ss_pred EEEEEEEcccCC
Confidence 999999996543
No 243
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=113.66 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=67.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
.+.++|||+|| ++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|++|++.|+|..|. |+.|+|+|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVNI 83 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEET---TEEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEE
Confidence 46799999996 99999999999999 998554 467899999999999999999999999998 89999999
Q ss_pred ccccch
Q 021857 125 AKKNLF 130 (306)
Q Consensus 125 a~~~~~ 130 (306)
++.+..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 966543
No 244
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=118.80 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
....++|||+|||+++|+++|+++|+.| |.|..++ ..||||||+|.+.++|++|++ ++|..|. |+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~----G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~---gr 79 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK---ET 79 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTS----SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT---TT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhc----CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC---CE
Confidence 3457999999999999999999999999 9885542 247999999999999999999 9999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|.|.++.....
T Consensus 80 ~l~V~~~~~~~~ 91 (103)
T 1s79_A 80 DLLILFKDDYFA 91 (103)
T ss_dssp TCEEEEHHHHHH
T ss_pred EEEEEEchHHHH
Confidence 999999865443
No 245
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=123.43 Aligned_cols=75 Identities=21% Similarity=0.187 Sum_probs=65.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----EEee------CCcCeEEEEeCCHHHHHHHHHHhcCc----ee
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNYK------GEKPMGFALFSTAQLAVAAKDALQEM----IF 112 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----v~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~----~~ 112 (306)
.+.++|||+|||+++||++|+++|+.| |.| +++- ..||||||+|.+. +|.+|++.|||. .+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~----G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPY----AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGG----CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 568899999999999999999999999 766 3331 2469999999999 999999999999 88
Q ss_pred CCCCCCeEEEEEccccc
Q 021857 113 DAETKSVLHTEMAKKNL 129 (306)
Q Consensus 113 ~~~~g~~i~V~~a~~~~ 129 (306)
. |+.|+|+|++...
T Consensus 96 ~---gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 D---GKTINVEFAKGSK 109 (131)
T ss_dssp G---GCCCCCEECCCSC
T ss_pred C---CEEEEEEECCCCC
Confidence 8 8999999996653
No 246
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=2.7e-16 Score=122.26 Aligned_cols=77 Identities=16% Similarity=0.333 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++|+++|+++|+.||.|.+|+++.+. .+|||||+|.+.++|.+|| .|||..|.| ..|+| |+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG-RTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT-EECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC-eEEEEEEC
Confidence 36899999999999999999999999999999998653 2499999999999999999 899999995 57999 98
Q ss_pred eCCc
Q 021857 297 QYPF 300 (306)
Q Consensus 297 k~~~ 300 (306)
+.+-
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 247
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=118.33 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 85 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA----GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF---DRP 85 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC---CCE
Confidence 568999999999999999999999999 8885442 12699999999999999999999999998 899
Q ss_pred EEEEEcccc
Q 021857 120 LHTEMAKKN 128 (306)
Q Consensus 120 i~V~~a~~~ 128 (306)
|+|+|++..
T Consensus 86 l~v~~a~~~ 94 (114)
T 2do0_A 86 MHVKMDERA 94 (114)
T ss_dssp CEEEECSCC
T ss_pred EEEEEcccC
Confidence 999998543
No 248
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=117.52 Aligned_cols=75 Identities=12% Similarity=0.032 Sum_probs=64.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEE----Ee-e---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV----NY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv----~~-~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
+..++|||+|||+++|+++|+++|+.| |.|. .. + ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~ 85 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SR 85 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTS----CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC---Ce
Confidence 457899999999999999999999999 6552 11 1 23699999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 021857 119 VLHTEMAKKN 128 (306)
Q Consensus 119 ~i~V~~a~~~ 128 (306)
.|+|++++..
T Consensus 86 ~l~V~~a~~~ 95 (98)
T 2cqp_A 86 KVKLVLGSGP 95 (98)
T ss_dssp ECEEEESSCS
T ss_pred EEEEEEcCCC
Confidence 9999998643
No 249
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.1e-16 Score=113.20 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=62.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 225 tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|++|++ |||..|.|. +++| |+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~-~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK-MVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC-CCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE-EEEEEeC
Confidence 499999999999999999999999999999986542 4999999999999999998 999999955 6888 64
No 250
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=2.7e-16 Score=119.57 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=65.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+.+ |..|.| ..++|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g-~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS-KTIDPK 99 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT-EEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC-EEEEEE
Confidence 34578999999999999999999999999999999986532 499999999999999999987 588884 57999
Q ss_pred EeeC
Q 021857 295 RIQY 298 (306)
Q Consensus 295 ~~k~ 298 (306)
|++.
T Consensus 100 ~a~~ 103 (109)
T 2rs2_A 100 VAFP 103 (109)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8764
No 251
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=120.60 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++|+++|+++|+.||.|..|+|+.+.. +|||||+|.+.++|.+||+. ||..|.| ..|+| |+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-RVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT-EEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC-EEEEEEEC
Confidence 468999999999999999999999999999999997532 48999999999999999999 9999985 47999 87
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 252
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=116.58 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=65.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE-------eeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN-------YKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~-------~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.++|||+|||+++|+++|+++|+.| |.|.. ....+|||||+|.+.++|++|++ |||..|. |+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~ 86 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL----FAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNE 86 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH----HHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT---TBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC---CcE
Confidence 457899999999999999999999999 65421 12457999999999999999999 9999998 899
Q ss_pred EEEEEccccc
Q 021857 120 LHTEMAKKNL 129 (306)
Q Consensus 120 i~V~~a~~~~ 129 (306)
|+|.+++.+.
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 9999996553
No 253
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.5e-16 Score=120.62 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=64.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEe-cCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLR-QER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~-~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
...++|||+|||+++|+++|+++|+.||.|.++.++. +.. +|||||+|.+.++|.+||+ |||..|.|. .++| +
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr-~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR-FIQVHP 100 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS-CBEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc-EEEEEE
Confidence 3568999999999999999999999999987743332 222 4999999999999999999 999999955 7999 8
Q ss_pred eeC
Q 021857 296 IQY 298 (306)
Q Consensus 296 ~k~ 298 (306)
++.
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 254
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.6e-16 Score=115.38 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=67.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||. +|..|.| ..++|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g-~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG-RWCDCK 88 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT-EEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC-eEEEEE
Confidence 34578899999999999999999999999999999987533 3899999999999999999 5788884 47999
Q ss_pred EeeCC
Q 021857 295 RIQYP 299 (306)
Q Consensus 295 ~~k~~ 299 (306)
|++..
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 88764
No 255
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=116.91 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe-e--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~-~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..+ . ..+|||||+|.+.++|++|++.|+|..|. |+.|+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEET---TEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 3568999999999999999999999999 887444 2 23699999999999999999999999998 899999
Q ss_pred EEccccc
Q 021857 123 EMAKKNL 129 (306)
Q Consensus 123 ~~a~~~~ 129 (306)
+|++.+.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9996654
No 256
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=6.4e-16 Score=116.15 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=64.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---e-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| | |+.+ + ..+|||||+|.+.++|++|+ .|||..|. |+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~ 83 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL----S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG---DR 83 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS----C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET---TE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC----C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC---Ce
Confidence 467999999999999999999999999 6 5332 1 12699999999999999999 89999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|+|++.+.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999997654
No 257
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=118.59 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh-cCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCce-eCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRW-LPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMI-FDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~-~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~-~~~~~g 117 (306)
.+.++|||+|||+++|+++|+++|+. | |.|..++ ..+|||||+|.+.++|++|++.|+|.. +. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~----G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~---g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY----PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG---S 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC----TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS---S
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC----CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC---C
Confidence 56799999999999999999999999 9 8874442 136999999999999999999999999 88 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|+|++.+..
T Consensus 80 ~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 80 KPVRLSVAIPKAS 92 (104)
T ss_dssp SCCCCCBCCCCCS
T ss_pred EeEEEEEccCCCc
Confidence 9999999966543
No 258
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=7e-16 Score=120.23 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=68.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..+. ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 92 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQ 92 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---Ce
Confidence 467999999999999999999999999 9885552 12699999999999999999999999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|+|+|++.+..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999976543
No 259
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=120.94 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=65.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
...+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 131 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--- 131 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET---
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 34568999999999999999999999999 9885552 23699999999999999999999999998
Q ss_pred CCeEEEEEc
Q 021857 117 KSVLHTEMA 125 (306)
Q Consensus 117 g~~i~V~~a 125 (306)
|+.|+|+||
T Consensus 132 g~~l~v~~A 140 (140)
T 2ku7_A 132 GRTIRVNLA 140 (140)
T ss_dssp TEEEEEEC-
T ss_pred CEEEEEEeC
Confidence 899999985
No 260
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=119.06 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCC-ceEEEEE-ec----CCcceEEEEECCHHHHHHHHHHhC--CceeCCCCcee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVL-RQ----ERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVG 293 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~-i~~vkl~-~~----~~~g~aFV~F~~~~~A~~Ai~~ln--G~~i~~~~~~~ 293 (306)
+.++|||+|||.++|+++|+++|+.||. |.+|+++ .+ ..+|||||+|.+.++|.+|++.|| +..|.| ..++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g-~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG-HQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT-BCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC-CeEE
Confidence 5789999999999999999999999998 9999998 32 234999999999999999999996 588885 5799
Q ss_pred E-EeeCC
Q 021857 294 M-RIQYP 299 (306)
Q Consensus 294 i-~~k~~ 299 (306)
| |++..
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9 88753
No 261
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=5.3e-16 Score=117.12 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCC
Q 021857 47 DEVRTIFITGLPDDV------KERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~------tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~ 114 (306)
...++|||+|||+.+ |+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~- 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD- 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS-
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC-
Confidence 457899999999999 889999999999 9886553 23699999999999999999999999998
Q ss_pred CCCC-eEEEEEcccc
Q 021857 115 ETKS-VLHTEMAKKN 128 (306)
Q Consensus 115 ~~g~-~i~V~~a~~~ 128 (306)
|+ .|+|.++...
T Consensus 88 --g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 --KQHTFRVNLFTDF 100 (105)
T ss_dssp --TTCEEEEECSCCC
T ss_pred --CCceEEEEEcchH
Confidence 88 9999998644
No 262
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=119.44 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=67.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCc-eEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGF-KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i-~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||+++|+++|+++|+.||.| .+|+|+.+.. +|||||+|.+.++|.+||+. ||..|.| ..|+| +
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g-r~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG-REAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT-EEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC-eEEEEEE
Confidence 357899999999999999999999999999 8899986542 49999999999999999998 9999995 47999 8
Q ss_pred eeC
Q 021857 296 IQY 298 (306)
Q Consensus 296 ~k~ 298 (306)
++.
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 263
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=5.3e-16 Score=113.24 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=65.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccc
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~ 127 (306)
..++|||+|||+++|+++|+++|+.| .... +.+...||||||+|.+.++|++|++.|||..+. |+.|+|+|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~--~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKY--CYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFR---GKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCC--EEEEGGGTEEEECCSCHHHHHHHHHHHTTEEET---TEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE--EEEeCCCcEEEEEECCHHHHHHHHHHhCCCeEC---CcEEEEEEcCC
Confidence 57899999999999999999999998 4322 233367899999999999999999999999998 89999999865
Q ss_pred cc
Q 021857 128 NL 129 (306)
Q Consensus 128 ~~ 129 (306)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 264
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=124.61 Aligned_cols=78 Identities=15% Similarity=0.345 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCceE--------EEEEec-CCcceEEEEECCHHHHHHHHHHhCCceeCCCC
Q 021857 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLRQ-ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (306)
Q Consensus 220 ~~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~--------vkl~~~-~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~ 290 (306)
..++++|||+|||.++|+++|+++|+.||.|.+ +++... ..+|||||+|.+.++|.+||..|||..|. +.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~-g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF-GK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET-TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC-Cc
Confidence 446899999999999999999999999999875 444432 33599999999999999999999999998 45
Q ss_pred ceeE-EeeC
Q 021857 291 SVGM-RIQY 298 (306)
Q Consensus 291 ~~~i-~~k~ 298 (306)
.|+| |++.
T Consensus 121 ~l~V~~a~~ 129 (143)
T 3egn_A 121 PMVVQFARS 129 (143)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 8999 9875
No 265
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.4e-16 Score=115.54 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceE-EEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~-vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
...++|||+|||+++|+++|+++|+.||.|.. |+|+.+.. +|||||+|.+.++|.+||+. ||..|.+. .++| +
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr-~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR-YIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS-CCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc-EEEEEE
Confidence 35789999999999999999999999999987 88875422 49999999999999999998 99999955 6899 7
Q ss_pred eeC
Q 021857 296 IQY 298 (306)
Q Consensus 296 ~k~ 298 (306)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 653
No 266
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.5e-16 Score=115.41 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.+.++|||+|||+++|+++|+++|+.| | |+.++ ..+|||||+|.+.++|++|+ .|+|..|. |
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g 83 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---N 83 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS----C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET---T
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC----C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC---C
Confidence 456999999999999999999999999 8 75442 12699999999999999999 89999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|++++.+..
T Consensus 84 ~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 KRIRVDVADQAQD 96 (104)
T ss_dssp EECEEEECCCCCC
T ss_pred cEEEEEEccCCCC
Confidence 9999999976643
No 267
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-16 Score=112.37 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=63.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|| ..|.|. .++| ++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~-~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK-TIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC-CCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE-EEEEEec
Confidence 4699999999999999999999999999999986542 4899999999999999999999 888854 6888 65
No 268
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=119.98 Aligned_cols=76 Identities=12% Similarity=0.269 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHHhhcCCCcCcEEEee-----------CCcCeEEEEeCCHHHHHHHHHHhcCcee
Q 021857 47 DEVRTIFITGLPDDVKERELQ---NLLRWLPGYEASQVNYK-----------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~---~~f~~~~~~~g~iv~~~-----------~~kg~aFV~F~~~~~A~~Al~~l~g~~~ 112 (306)
.+.++|||+|||+++|+++|+ ++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF----GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT----SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc----CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 457899999999999999999 999999 9885442 1248999999999999999999999999
Q ss_pred CCCCCCeEEEEEccccc
Q 021857 113 DAETKSVLHTEMAKKNL 129 (306)
Q Consensus 113 ~~~~g~~i~V~~a~~~~ 129 (306)
. |+.|+|+|++.+.
T Consensus 89 ~---gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 D---GRTLKASLGTTKY 102 (111)
T ss_dssp T---TEEEEEESCCCCS
T ss_pred C---CEEEEEEeccccc
Confidence 8 8999999996654
No 269
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=3e-15 Score=116.01 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=64.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--CCcCe-EEEEeCCHHHHHHHHHHhcCceeCCCCC--CeEEEE
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPM-GFALFSTAQLAVAAKDALQEMIFDAETK--SVLHTE 123 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--~~kg~-aFV~F~~~~~A~~Al~~l~g~~~~~~~g--~~i~V~ 123 (306)
...|||+||++.+|+++|+++|+.| |.|.+++ ...|+ |||+|.+.++|+.|++.|||..|+ | +.|+|+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~y----G~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~---g~~~~l~V~ 97 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPV----GKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIY---AGCCTLKIE 97 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTT----SCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCB---TTBSEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEec---CCCeEEEEE
Confidence 3446899999999999999999999 9885442 22495 999999999999999999999997 5 699999
Q ss_pred Eccccch
Q 021857 124 MAKKNLF 130 (306)
Q Consensus 124 ~a~~~~~ 130 (306)
|++.+..
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9987764
No 270
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=117.75 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCc-EEEee---------CCcCeEEEEeCCHHHHHHHHHHhc--CceeCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS-QVNYK---------GEKPMGFALFSTAQLAVAAKDALQ--EMIFDA 114 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~-iv~~~---------~~kg~aFV~F~~~~~A~~Al~~l~--g~~~~~ 114 (306)
.+.++|||+|||+++|+++|+++|+.| |. |..+. ..||||||+|.+.++|++|++.|+ +..+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~- 80 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW- 80 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT-
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec-
Confidence 468999999999999999999999999 87 74442 347999999999999999999996 58888
Q ss_pred CCCCeEEEEEccccch
Q 021857 115 ETKSVLHTEMAKKNLF 130 (306)
Q Consensus 115 ~~g~~i~V~~a~~~~~ 130 (306)
|+.|+|+|++.+..
T Consensus 81 --g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 81 --GHQIAVDWAEPEID 94 (109)
T ss_dssp --TBCCEEEESCSSCS
T ss_pred --CCeEEEEEcCCCCC
Confidence 89999999976543
No 271
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=5.9e-16 Score=112.99 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=64.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
..++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|+ .|+|..+. |+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~---g~~ 76 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGC----GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR---GRQ 76 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGG----CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET---TEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC---CcE
Confidence 46899999999999999999999999 8885442 23699999999999999999 89999998 899
Q ss_pred EEEEEcccc
Q 021857 120 LHTEMAKKN 128 (306)
Q Consensus 120 i~V~~a~~~ 128 (306)
|+|.+++..
T Consensus 77 l~V~~a~~~ 85 (89)
T 3ucg_A 77 IKVIPKRTN 85 (89)
T ss_dssp CEEEETTTT
T ss_pred EEEEEccCC
Confidence 999998653
No 272
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=1.1e-15 Score=122.86 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 142 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY----GPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLC---GCRVRV 142 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH----SCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh----CCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 3568999999999999999999999999 9985553 34899999999999999999999999998 899999
Q ss_pred EEcccc
Q 021857 123 EMAKKN 128 (306)
Q Consensus 123 ~~a~~~ 128 (306)
+|++.+
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999654
No 273
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-15 Score=115.59 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=66.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCC---
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAE--- 115 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~--- 115 (306)
+.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+...
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF----GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3567999999999999999999999999 8885442 1369999999999999999999999998311
Q ss_pred --CCCeEEEEEcccc
Q 021857 116 --TKSVLHTEMAKKN 128 (306)
Q Consensus 116 --~g~~i~V~~a~~~ 128 (306)
.+++|.|.|+++.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 2789999999754
No 274
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-16 Score=118.85 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..+ . ..+|||||+|.+.++|++|++.|||..+. |+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 78 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS---GR 78 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTT----SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS---SS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhc----CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---Cc
Confidence 457899999999999999999999999 777332 1 12699999999999999999999999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|+|.|++.+..
T Consensus 79 ~l~v~~a~~~~~ 90 (104)
T 1p1t_A 79 ALRVDNAASEKN 90 (104)
T ss_dssp CBEEEETTCTTH
T ss_pred EEEEEeCCCccc
Confidence 999999977654
No 275
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=3.4e-16 Score=121.68 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|+ .|+|..|. |+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~ 105 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSC----GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR---GR 105 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTT----SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC---Ce
Confidence 357999999999999999999999999 8884432 23699999999999999999 79999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|+|++...
T Consensus 106 ~l~V~~a~~~~ 116 (124)
T 2jwn_A 106 TIKVLPKRTNM 116 (124)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999986543
No 276
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.6e-16 Score=119.54 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|+.+ . ..+|||||+|.+.++|++|++. +|..|. |
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g 95 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQW----GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID---G 95 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSS----CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET---T
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC---C
Confidence 3457999999999999999999999999 777333 1 2369999999999999999997 999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|++++.+..
T Consensus 96 ~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 96 RVVEPKRAVAREE 108 (116)
T ss_dssp EEEEEECCSSCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999976654
No 277
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=4.8e-16 Score=122.74 Aligned_cols=74 Identities=8% Similarity=0.071 Sum_probs=66.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCC---ceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~---i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..++|||+|||+++|+++|+++|+.||. |.+|+|+.+.. +|||||+|.+.++|.+||+ |||..|.+. .++|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr-~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHR-YIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS-EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE-EEEEE
Confidence 4789999999999999999999999999 88999986543 3999999999999999999 999999955 7888
Q ss_pred Eee
Q 021857 295 RIQ 297 (306)
Q Consensus 295 ~~k 297 (306)
+++
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 278
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=113.01 Aligned_cols=73 Identities=12% Similarity=0.251 Sum_probs=62.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..++|||+|||+++|+++|+++|+.||.|.+| +.....+.||||+|.+.++|.+||+ |||..|.| ..++| +++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g-~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG-HRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT-EECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC-EEEEEEECC
Confidence 36799999999999999999999999999998 4422222399999999999999999 99999995 47888 765
No 279
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1e-15 Score=111.27 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=62.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
+.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++ +++..|. |
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g 79 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKF----GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD---G 79 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC---C
Confidence 3578999999999999999999999999 8884442 126999999999999999997 5888888 8
Q ss_pred CeEEEEEc
Q 021857 118 SVLHTEMA 125 (306)
Q Consensus 118 ~~i~V~~a 125 (306)
+.|+|++|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999875
No 280
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=2.4e-16 Score=116.56 Aligned_cols=73 Identities=12% Similarity=0.024 Sum_probs=62.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEE----Ee-e---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV----NY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv----~~-~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
++.++|||+|||+++|+++|+++|+.| |.|. .. + ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr 85 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SR 85 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTS----CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC---Cc
Confidence 456899999999999999999999999 6652 11 1 23699999999999999999999999998 89
Q ss_pred eEEEEEcc
Q 021857 119 VLHTEMAK 126 (306)
Q Consensus 119 ~i~V~~a~ 126 (306)
.|+|+++.
T Consensus 86 ~l~v~~a~ 93 (95)
T 2ek1_A 86 KVKLSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEecc
Confidence 99999875
No 281
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=2e-15 Score=117.30 Aligned_cols=76 Identities=11% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--ee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.++|||+|||+++|+++|+++|+.| |.|.. +. ..+|||||+|.+.++|++|++.|||..+. |+.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 105 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRP 105 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTT----SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC---CcE
Confidence 568999999999999999999999999 77733 31 24699999999999999999999999998 899
Q ss_pred EEEEEccccc
Q 021857 120 LHTEMAKKNL 129 (306)
Q Consensus 120 i~V~~a~~~~ 129 (306)
|+|+|+....
T Consensus 106 l~V~~a~~~~ 115 (124)
T 2kt5_A 106 MDIQLVASQI 115 (124)
T ss_dssp EEEEEECCTT
T ss_pred EEEEEeCCCC
Confidence 9999996543
No 282
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=1.1e-15 Score=118.42 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.++++|||+|| ++|+++|+++|+.||.|.+|++. ..+|||||+|.+.++|.+||+.|||..|.| ..++| |++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g-~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES-VQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS-CBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEEeCCC
Confidence 45789999996 69999999999999999999997 345899999999999999999999999984 57999 98865
Q ss_pred c
Q 021857 300 F 300 (306)
Q Consensus 300 ~ 300 (306)
-
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 283
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1e-15 Score=112.01 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=60.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCC-CCceeE-EeeC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS-SGSVGM-RIQY 298 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~-~~~~~i-~~k~ 298 (306)
++..+|||+|||+++|+++|+++|++||.|.+|+|+.+ .+|||||+|++.++|. .|+|..+.+ +.+++| +++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcCC
Confidence 35789999999999999999999999999999999964 5599999999999998 367877652 446777 7764
No 284
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=4e-16 Score=123.26 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=67.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~---g 116 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---G 116 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGG----SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 3568999999999999999999999999 8774331 23699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|+|++...
T Consensus 117 ~~l~V~~a~~~~ 128 (135)
T 2lea_A 117 RELRVQMARYGR 128 (135)
T ss_dssp SCCEEEECCCCC
T ss_pred EEEEEEECCCCC
Confidence 999999997654
No 285
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-16 Score=115.02 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=63.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+. |+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 75 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPY----GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ---AQ 75 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTT----SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC---EE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe---eE
Confidence 468999999999999999999999999 8885542 23699999999999999999999999998 78
Q ss_pred eEEEEEc
Q 021857 119 VLHTEMA 125 (306)
Q Consensus 119 ~i~V~~a 125 (306)
.|++.++
T Consensus 76 ~~~~~~~ 82 (85)
T 1x4e_A 76 MAKQSGP 82 (85)
T ss_dssp SCCSSCC
T ss_pred EEeecCC
Confidence 8876654
No 286
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=116.57 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=67.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++. +|..|. |
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g 84 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY----GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD---G 84 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC---C
Confidence 3568999999999999999999999999 8885442 1259999999999999999998 999998 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|++++.+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 RNIDPKPCTPRGM 97 (105)
T ss_dssp EEEBCCCSCCSSC
T ss_pred EEEEEEEccCCCC
Confidence 9999999976543
No 287
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=3.5e-15 Score=120.79 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
...++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 140 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GR 140 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---Ce
Confidence 457899999999999999999999999 9885542 24699999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|.|++...
T Consensus 141 ~l~v~~a~~~~ 151 (158)
T 2kn4_A 141 ELRVQMARYGR 151 (158)
T ss_dssp EEEEEEECCSS
T ss_pred EEEEEECCCCC
Confidence 99999996653
No 288
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.4e-16 Score=120.64 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEE---Ee--e---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV---NY--K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv---~~--~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|. .+ + ..+|||||+|.+.++|++||+ |||..|. |+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr 94 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKL----DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG---NR 94 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSS----CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST---TS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC---Cc
Confidence 467899999999999999999999999 6551 12 1 236999999999999999999 9999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|.++..+.
T Consensus 95 ~i~V~~a~~~~ 105 (124)
T 1wel_A 95 FIQVHPITKKG 105 (124)
T ss_dssp CBEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999996654
No 289
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.6e-15 Score=128.96 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.|.+||||+|||.++|+++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|.+||+.|||..+.|. .+++ +
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~-~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK-PVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-ECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc-cccccc
Confidence 3578999999999999999999999999999999997532 39999999999999999999999999954 6888 7
Q ss_pred eeC
Q 021857 296 IQY 298 (306)
Q Consensus 296 ~k~ 298 (306)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 290
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=116.45 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=65.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE---EEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ---VNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i---v~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.| +.+. ..+|||||+|.+.++|++||+. ||..|. |+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~---gr 84 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI----PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN---GR 84 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS----CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET---TE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC----CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC---Ce
Confidence 567999999999999999999999999 665 4442 2479999999999999999996 999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|.++..+.
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999996554
No 291
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-15 Score=111.86 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=65.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++ ++..|. |
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~---g 82 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF----GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID---G 82 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET---T
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC---C
Confidence 3567899999999999999999999999 8884442 125999999999999999998 477787 8
Q ss_pred CeEEEEEccccch
Q 021857 118 SVLHTEMAKKNLF 130 (306)
Q Consensus 118 ~~i~V~~a~~~~~ 130 (306)
+.|+|.|++.+..
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 9999999976654
No 292
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=2e-15 Score=122.14 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 109 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS----GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD---DR 109 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---Ce
Confidence 467999999999999999999999999 8885442 13599999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
.|+|+|++...
T Consensus 110 ~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 IIRTDWDAGFK 120 (156)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 293
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=109.38 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=64.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-C--CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
...++|||+|||+++|+++|+++|+.| ......+... + .+|||||+|.+.++|++|++ |||..|. |+.|+|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~---gr~i~v~ 82 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG---GRYIEVF 82 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET---TEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC---CcEEEEE
Confidence 457899999999999999999999998 4322222221 2 36999999999999999999 9999998 8999999
Q ss_pred Ecccc
Q 021857 124 MAKKN 128 (306)
Q Consensus 124 ~a~~~ 128 (306)
+++.+
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98654
No 294
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.7e-15 Score=125.23 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC---CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~---~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
.++++|||+|||..+++++|+++|+.||.|++|+|+.+. .+|||||+|.+.++|.+|++.|||..|.| ..|+| |+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G-r~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG-RPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS-SBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC-EEEEEEEe
Confidence 457899999999999999999999999999999998643 24999999999999999999999999995 57999 98
Q ss_pred eCCc
Q 021857 297 QYPF 300 (306)
Q Consensus 297 k~~~ 300 (306)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7643
No 295
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=8.9e-16 Score=111.52 Aligned_cols=69 Identities=22% Similarity=0.472 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------CceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQ----P-------GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~----G-------~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~ 290 (306)
+.++|||+|||.++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..|.|.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~- 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ- 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe-
Confidence 47899999999999999999999999 8 8999999853 589999999999999999 9999999954
Q ss_pred ceeE
Q 021857 291 SVGM 294 (306)
Q Consensus 291 ~~~i 294 (306)
.++|
T Consensus 81 ~l~V 84 (87)
T 2hzc_A 81 SLKI 84 (87)
T ss_dssp ECEE
T ss_pred EEEE
Confidence 6766
No 296
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=9.3e-16 Score=131.96 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--CceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G--~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..++|||+||++++|+++|+++|+.|| .|++|+|+.+.. +|||||+|.+.++|.+||+.|||..|.|. .|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr-~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ-NPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB-CCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE-EeEEE
Confidence 467899999999999999999999999 999999997532 49999999999999999999999999954 7999
Q ss_pred EeeCC
Q 021857 295 RIQYP 299 (306)
Q Consensus 295 ~~k~~ 299 (306)
|++..
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98643
No 297
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=115.28 Aligned_cols=72 Identities=10% Similarity=0.105 Sum_probs=63.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
...+|||+|||+++|+++|+++|+.| .|.+|+|+.+.. +|||||+|.+.++|.+|| .|||..|.+. .+.| .+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr-~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR-YVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE-EEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe-EEEEEEC
Confidence 35799999999999999999999999 899999986433 499999999999999999 7999999955 6777 44
No 298
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=7e-16 Score=108.94 Aligned_cols=67 Identities=12% Similarity=0.281 Sum_probs=59.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
+|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++ |+|..+. |+.|+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~---g~~l~v 72 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF----GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN---NKMVEC 72 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT----SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS---SCCCEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC---CEEEEE
Confidence 69999999999999999999999 8874432 236999999999999999998 9999998 899999
Q ss_pred EEc
Q 021857 123 EMA 125 (306)
Q Consensus 123 ~~a 125 (306)
++|
T Consensus 73 ~~A 75 (75)
T 2mss_A 73 KKA 75 (75)
T ss_dssp ECC
T ss_pred EeC
Confidence 875
No 299
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=6.4e-16 Score=117.09 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCC---ceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~---i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..++|||+|||+++|+++|+++|+.||. |.+|+|+.+.. +|||||+|.+.++|.+||+ |||..|.|. .++|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr-~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQR-YVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS-CCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCe-EEEEE
Confidence 5789999999999999999999999887 89999986543 4899999999999999999 999999855 6888
Q ss_pred Eee
Q 021857 295 RIQ 297 (306)
Q Consensus 295 ~~k 297 (306)
+++
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 300
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=7.1e-16 Score=110.70 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=59.6
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhhcCCCcCcEEEee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 49 VRTIFITGLPDDV------KERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 49 ~~~LfV~nLp~~~------tee~L~~~f~~~~~~~g~iv~~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
+++|||+|||+.+ |+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--- 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--- 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS---
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC---
Confidence 4799999999999 789999999999 9886553 23699999999999999999999999998
Q ss_pred CC-eEEE
Q 021857 117 KS-VLHT 122 (306)
Q Consensus 117 g~-~i~V 122 (306)
|+ .|+|
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 88 8775
No 301
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-15 Score=111.75 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=64.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE-ee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN-YK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~-~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
...++|||+|||+++|+++|+++|+.| |.|.. ++ ..+|||||+|.+.++|++|++. +|..|. ||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~---gr 84 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGL----EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG---HR 84 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTC----CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC---Cc
Confidence 457899999999999999999999999 87754 31 2369999999999999999997 999998 89
Q ss_pred eEEEEEcccc
Q 021857 119 VLHTEMAKKN 128 (306)
Q Consensus 119 ~i~V~~a~~~ 128 (306)
.|+|.++..+
T Consensus 85 ~i~v~~~~~~ 94 (104)
T 1wg5_A 85 YIEIFKSSRA 94 (104)
T ss_dssp CCEEEEECTT
T ss_pred EEEEEECCHH
Confidence 9999987543
No 302
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=111.14 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---C--CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
...++|||+|||+++|+++|+++|+.| |.|..++ . ..|.|||+|.+.++|++|++.|||..|. |+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY----GVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE---NFTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH----SCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS---SCBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEE
Confidence 346899999999999999999999999 9885552 2 2366999999999999999999999998 89999
Q ss_pred EEEcccc
Q 021857 122 TEMAKKN 128 (306)
Q Consensus 122 V~~a~~~ 128 (306)
|+|++.+
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9999765
No 303
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.4e-15 Score=110.51 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=63.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcC-------cEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g-------~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.+.++|||+|||+++|+++|+++|+.|....| .|..+ ..+||||||+|.+.++|++|+ .|||..+. |
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~---g 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---G 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC---C
Confidence 45799999999999999999999999832223 56444 456899999999999999999 89999998 8
Q ss_pred CeEEEEE
Q 021857 118 SVLHTEM 124 (306)
Q Consensus 118 ~~i~V~~ 124 (306)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999873
No 304
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=4.7e-16 Score=109.80 Aligned_cols=70 Identities=17% Similarity=0.378 Sum_probs=62.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 225 tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++. +|..|.|. .++| ++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~-~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS-KCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB-CCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCE-EEEEEEC
Confidence 599999999999999999999999999999986432 49999999999999999996 99999854 6877 64
No 305
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1.3e-15 Score=117.59 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=64.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCc---E--EEe---e--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS---Q--VNY---K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~---i--v~~---~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
...++|||+|||+++|+++|+++|+.| |. | +.+ + ..||||||+|.+.++|++|++ |+|..|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--- 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC----TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG--- 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS----CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---
Confidence 457899999999999999999999998 55 3 222 1 236999999999999999999 9999998
Q ss_pred CCeEEEEEccccc
Q 021857 117 KSVLHTEMAKKNL 129 (306)
Q Consensus 117 g~~i~V~~a~~~~ 129 (306)
|+.|+|.++..+.
T Consensus 87 gr~i~V~~a~~~~ 99 (118)
T 2db1_A 87 HRYIEVFKSHRTE 99 (118)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 8999999985443
No 306
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=1.7e-14 Score=127.59 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=66.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--C-CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--~-~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
..++++|||+|||.++|+++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..|.. |+.|+|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~----G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~l~v 277 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQF----PGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQ--NNAMKI 277 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhc----CCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCC--CCEEEE
Confidence 3568999999999999999999999999 9885542 3 35999999999999999999999999974 799999
Q ss_pred EEcc
Q 021857 123 EMAK 126 (306)
Q Consensus 123 ~~a~ 126 (306)
.|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9985
No 307
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=8.1e-17 Score=123.82 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceE--------EEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~--------vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~ 288 (306)
.+.++|||+|||.++++++|+++|+.||.|.+ |+|+.+.. +|||||+|.+.++|.+|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999998 88886532 4899999999999999999999999995
Q ss_pred CCceeE-EeeCC
Q 021857 289 SGSVGM-RIQYP 299 (306)
Q Consensus 289 ~~~~~i-~~k~~ 299 (306)
. .++| |++..
T Consensus 85 ~-~l~V~~a~~~ 95 (116)
T 2lcw_A 85 N-PIKVSFATRR 95 (116)
Confidence 4 7999 88754
No 308
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=2e-15 Score=129.83 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCC---------CHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeC----
Q 021857 221 PPCNTLFIGNLGESI---------NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP---- 287 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~---------t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~---- 287 (306)
..+++|||+||+..+ ++++|+++|+.||.|++|+|+. ++|||||+|.+.++|+.|+++|||..|.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 358999999999998 7999999999999999999995 3489999999999999999999999991
Q ss_pred -------CCCceeE-EeeC
Q 021857 288 -------SSGSVGM-RIQY 298 (306)
Q Consensus 288 -------~~~~~~i-~~k~ 298 (306)
.+..|.| |++.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-
T ss_pred ccccccCCCCEEEEEEccC
Confidence 3557999 9874
No 309
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=4.5e-15 Score=114.97 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
.+.++|||+|| ++|+++|+++|+.| |.| +.+...+|||||+|.+.++|++|++.|||..+. |+.|+|.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~----G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~---g~~l~V~~ 107 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVNI 107 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT----CCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCS---SCBCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc----CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEEE
Confidence 46899999996 79999999999999 887 444567899999999999999999999999998 89999999
Q ss_pred ccccc
Q 021857 125 AKKNL 129 (306)
Q Consensus 125 a~~~~ 129 (306)
++.+.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 97654
No 310
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=119.67 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE----------EEe-e--CCcCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----------VNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i----------v~~-~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
.++++|||+|||+++|+++|+++|+.| |.| +.+ . ..+|||||+|.+.++|.+|++.|||..|.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRY----VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGG----CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 567999999999999999999999999 643 211 2 34799999999999999999999999998
Q ss_pred CCCCCeEEEEEccccc
Q 021857 114 AETKSVLHTEMAKKNL 129 (306)
Q Consensus 114 ~~~g~~i~V~~a~~~~ 129 (306)
|+.|+|.|++...
T Consensus 119 ---g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 ---GKPMVVQFARSAR 131 (143)
T ss_dssp ---TEECEEEECCCSC
T ss_pred ---CcEEEEEECCCCC
Confidence 8999999997654
No 311
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=1.6e-15 Score=113.75 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
+.++|||+|||.++++++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+|++ ||..|+|. .+.| ++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~-~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK-KLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTE-ECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCE-EEEEEECC
Confidence 468999999999999999999999999999999997543 3999999999999999999 88888844 6887 654
No 312
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=4.9e-15 Score=121.03 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--C------CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G------EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--~------~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.+.++|||+|||+.+|+++|+.+|+.| |.|..+. . .+|||||+|.+.++|++|++.|||..|. |+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 142 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQ 142 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcC----CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC---CE
Confidence 467899999999999999999999999 8885442 1 2699999999999999999999999998 89
Q ss_pred eEEEEEccccch
Q 021857 119 VLHTEMAKKNLF 130 (306)
Q Consensus 119 ~i~V~~a~~~~~ 130 (306)
.|.|.|++.+..
T Consensus 143 ~l~V~~a~~~~~ 154 (165)
T 1rk8_A 143 TIQVDWCFVKGP 154 (165)
T ss_dssp ECEEEESEECC-
T ss_pred EEEEEEecCCCC
Confidence 999999976543
No 313
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=4e-16 Score=114.22 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=61.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
++|||+|||.++|+++|+++|+.| |.|..+ . ..+|||||+|.+.+ |++|+..|||..+. |+.|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~---g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF----GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM---GRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH----TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS---SSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc----CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC---CeEEE
Confidence 699999999999999999999999 877333 1 23699999999999 99999999999998 89999
Q ss_pred EEEccccc
Q 021857 122 TEMAKKNL 129 (306)
Q Consensus 122 V~~a~~~~ 129 (306)
|++|....
T Consensus 74 V~~a~~~~ 81 (90)
T 2ki2_A 74 VTEANPKK 81 (90)
T ss_dssp EEEC----
T ss_pred EEEcCCCC
Confidence 99996554
No 314
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=108.43 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=59.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--ee------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--~~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~ 121 (306)
++|||+|||+++|+++|+++|+.| |.|.. +. ..+|||||+|.+.++|++|++.++ ..+. |+.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~---g~~l~ 72 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD---SKTID 72 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT----SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS---SCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC---CEEEE
Confidence 589999999999999999999999 77632 21 236999999999999999999998 7887 89999
Q ss_pred EEEc
Q 021857 122 TEMA 125 (306)
Q Consensus 122 V~~a 125 (306)
|++|
T Consensus 73 v~~a 76 (77)
T 1uaw_A 73 PKVA 76 (77)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 315
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.4e-15 Score=120.01 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=64.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCc---E--EEe---e--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS---Q--VNY---K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~---i--v~~---~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
...++|||+|||+++|++||+++|+.| |. | +.+ + ..||||||+|.+.++|++|++ |||..|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~----G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--- 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDC----TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--- 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTC----CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---
Confidence 467899999999999999999999999 55 3 222 1 236999999999999999999 9999998
Q ss_pred CCeEEEEEccccc
Q 021857 117 KSVLHTEMAKKNL 129 (306)
Q Consensus 117 g~~i~V~~a~~~~ 129 (306)
||.|+|.++..+.
T Consensus 114 gr~i~V~~a~~~e 126 (136)
T 2hgl_A 114 HRYIEVFKSHRTE 126 (136)
T ss_dssp SSEEEEEECCHHH
T ss_pred CEEEEEEECChHH
Confidence 8999999985443
No 316
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=5.6e-15 Score=120.16 Aligned_cols=77 Identities=16% Similarity=0.286 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
++++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|. +..++| |+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR-NKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC-CcEEEEEec
Confidence 478999999999999999999999999999999986542 389999999999999999999999998 457999 88
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
+..
T Consensus 81 ~~~ 83 (168)
T 1b7f_A 81 RPG 83 (168)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 317
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=7.9e-15 Score=118.94 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.++|||+|||.++|+++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| ..++| |++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-KTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC-ceEEEEecC
Confidence 68999999999999999999999999999999997541 2899999999999999999999999994 57999 887
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
..
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 318
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=3.1e-15 Score=128.65 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 220 NPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 220 ~~~~~tLfV~NLp~-~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.+++++|||+|||. ++++++|+++|+.||.|.+|+++.+. +|||||+|.+.++|.+|++.|||..|.| ..++| |++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g-~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG-KPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSS-SBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEEec
Confidence 45689999999999 99999999999999999999999754 5899999999999999999999999985 57999 887
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
..
T Consensus 109 ~~ 110 (229)
T 2adc_A 109 HQ 110 (229)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 319
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=1.1e-15 Score=121.12 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=65.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
..++|||+|||+++|+++|+++|+.|| |++|+|+.+.. +|||||+|++.++|.+|| .|||..|.+. .++| .++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR-~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHR-YIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC-CCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCE-EEEEEECC
Confidence 467899999999999999999999999 77999986543 489999999999999999 8899999965 6888 665
Q ss_pred CC
Q 021857 298 YP 299 (306)
Q Consensus 298 ~~ 299 (306)
.+
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 320
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5e-15 Score=119.99 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=67.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
++|||+|||.++|+++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+|+..|||..|. +..++| |++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE-NNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC-CCeeEEEEcCCC
Confidence 5899999999999999999999999999999986543 399999999999999999999999998 457999 87543
No 321
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=4.3e-15 Score=114.03 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=61.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCc-CeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe-----EE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSV-----LH 121 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~k-g~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~-----i~ 121 (306)
..++|||+|||+++|+++|+++|+.| |.|+.+.-.+ |||||+|.+.++|++|++.|||..|. |+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCC---CTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEeeeEEEE
Confidence 46899999999999999999999999 9986664333 99999999999999999999999998 888 55
Q ss_pred EEEccc
Q 021857 122 TEMAKK 127 (306)
Q Consensus 122 V~~a~~ 127 (306)
|..+..
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 555533
No 322
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.2e-15 Score=109.26 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=64.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCC--cC-eEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE--KP-MGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~--kg-~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
...++|||+|||+++|+++|+++|+.| |.|..+... .| ||||+|.+.++|++|++ |+|..|. |+.|+|+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~---g~~l~V~ 77 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAF----GPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG---GHRLRVR 77 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGT----SCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEET---TEECCCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC---CEEEEEE
Confidence 457899999999999999999999999 888655211 12 99999999999999999 9999998 8999999
Q ss_pred Eccccc
Q 021857 124 MAKKNL 129 (306)
Q Consensus 124 ~a~~~~ 129 (306)
++..+.
T Consensus 78 ~a~~~~ 83 (94)
T 2e5g_A 78 PREQKE 83 (94)
T ss_dssp CSCCSC
T ss_pred ECCcCC
Confidence 875443
No 323
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.1e-15 Score=109.92 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeC-CCCceeE-EeeCC
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP-SSGSVGM-RIQYP 299 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~-~~~~~~i-~~k~~ 299 (306)
++++|||+|||.++|+++|+++|+.||.|.+|+|+.+ .+|||||+|.+.++|++ |+|..+. .+.+++| |++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCCC
Confidence 4789999999999999999999999999999999864 45999999999999975 4555542 2456778 77653
No 324
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.9e-15 Score=112.51 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEe---e--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY---K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~---~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
...++|||+|||+++||+||+++|+.| |.+ +.+ + ..||||||+|.+.++|++||+ +|+..|. ||.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPL----NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ---HRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSC----CCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS---SSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC---CcEE
Confidence 457899999999999999999999998 532 222 1 236999999999999999995 7999998 8999
Q ss_pred EEEEcccc
Q 021857 121 HTEMAKKN 128 (306)
Q Consensus 121 ~V~~a~~~ 128 (306)
+|.++...
T Consensus 85 ~V~~~~~~ 92 (102)
T 1wez_A 85 ELFLNSTA 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99987543
No 325
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=114.54 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=64.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCc---E--EEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS---Q--VNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~---i--v~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
...++|||+|||+++|+++|+++|+.| |. | +.+. ..+|||||+|.+.++|++|++ |+|..|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~----g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--- 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDC----RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG--- 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTS----CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS---
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhc----CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC---
Confidence 467899999999999999999999998 55 4 3331 246999999999999999999 9999998
Q ss_pred CCeEEEEEccccc
Q 021857 117 KSVLHTEMAKKNL 129 (306)
Q Consensus 117 g~~i~V~~a~~~~ 129 (306)
|+.|+|.++..+.
T Consensus 81 gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 81 QRYVEVYEINNED 93 (107)
T ss_dssp SSCCCCEECCHHH
T ss_pred CeEEEEEECCHHH
Confidence 8999999986544
No 326
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=115.15 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=63.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCc----eEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGF----KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i----~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
...+|||+|||+++|+++|+++|+.||.| ..|+|+.+.. +|||||+|.+.++|.+||+. ||..|.+. .++|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR-~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR-YIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC-EECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe-EEEE
Confidence 46899999999999999999999999975 6888886533 39999999999999999997 99999855 6777
Q ss_pred -Ee
Q 021857 295 -RI 296 (306)
Q Consensus 295 -~~ 296 (306)
.+
T Consensus 100 ~~a 102 (123)
T 2dha_A 100 FRS 102 (123)
T ss_dssp EEE
T ss_pred EEC
Confidence 55
No 327
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=3.4e-14 Score=117.35 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=68.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe--e-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 45 ~~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~--~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
...+.++|||+|||+.+|+++|+++|+.| |.|+.+ . ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~---G 156 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---G 156 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHT----SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS---S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC---C
Confidence 34568999999999999999999999999 877333 1 24699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|+|+....
T Consensus 157 r~l~V~~a~~~~ 168 (177)
T 2f3j_A 157 RPMDIQLVASQI 168 (177)
T ss_dssp SBCEEEEESSGG
T ss_pred EEEEEEEecCCC
Confidence 999999996554
No 328
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=1.8e-14 Score=105.39 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
..+..+|||+|||+++||++|+++|+.| |.|..++ .+||||||+|.+.++|++ |+|..+. ..|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~-~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLI-IKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEE-ETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcc-cCCEEEEE
Confidence 3567899999999999999999999999 9986653 458999999999999983 5666552 01799999
Q ss_pred EEccccc
Q 021857 123 EMAKKNL 129 (306)
Q Consensus 123 ~~a~~~~ 129 (306)
.+++.+.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9986553
No 329
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.8e-14 Score=108.61 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHhhccCCCceEEEEEecC-----CcceEEEEECCHHHHHHHHHHhCCceeCCCCc
Q 021857 222 PCNTLFIGNLGE-----SINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (306)
Q Consensus 222 ~~~tLfV~NLp~-----~~t~e~L~~~F~~~G~i~~vkl~~~~-----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~ 291 (306)
++++|+|+||-. +-++++|+++|++||.|.+|+|+.+. .+|||||+|.+.++|.+|++.|||..+.| ..
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G-r~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG-RV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-EE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-cE
Confidence 589999999963 23789999999999999999998642 25999999999999999999999999995 47
Q ss_pred eeE-Eee
Q 021857 292 VGM-RIQ 297 (306)
Q Consensus 292 ~~i-~~k 297 (306)
++| |++
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 888 764
No 330
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.1e-16 Score=120.49 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE--------ee--------CCcCeEEEEeCCHHHHHHHHHHhcCc
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--------YK--------GEKPMGFALFSTAQLAVAAKDALQEM 110 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~--------~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~ 110 (306)
.+.++|||+|||+++|+++|+++|+.| |.|.. ++ ..+|||||+|.+.++|++|++.|||.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 568999999999999999999999999 76644 21 23699999999999999999999999
Q ss_pred eeCCCCCCeEEEEEccccch
Q 021857 111 IFDAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 111 ~~~~~~g~~i~V~~a~~~~~ 130 (306)
.|. |+.|+|+|++.+..
T Consensus 81 ~~~---g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 81 EFS---GNPIKVSFATRRAD 97 (116)
Confidence 998 89999999976654
No 331
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=9.5e-15 Score=113.62 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCce--EEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFK--QMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~--~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
..++|||+|||+++|+++|+++|+.| .|+ +|+|+.+.. +|||||+|.+.++|.+||+. +|..|.|. .++| +
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR-~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHR-YIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB-CCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCE-EEEEEE
Confidence 46889999999999999999999999 677 899986433 49999999999999999985 78888854 6888 6
Q ss_pred ee
Q 021857 296 IQ 297 (306)
Q Consensus 296 ~k 297 (306)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 332
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=109.17 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=64.8
Q ss_pred CCCCEEEEcCCCCCCC-----------HHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 221 PPCNTLFIGNLGESIN-----------EEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t-----------~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
.++++|+|+||-...+ +++|+++|++||.|.+|.|.....+|||||+|.+.++|.+|+..|||..|. +
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG-G 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET-T
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 3589999999954332 689999999999999997764344699999999999999999999999998 4
Q ss_pred CceeE-EeeC
Q 021857 290 GSVGM-RIQY 298 (306)
Q Consensus 290 ~~~~i-~~k~ 298 (306)
..++| |++.
T Consensus 92 r~l~v~~a~~ 101 (112)
T 2dit_A 92 RQITAQAWDG 101 (112)
T ss_dssp EECEEEECCS
T ss_pred cEEEEEEeCC
Confidence 57999 8643
No 333
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=4.8e-15 Score=127.51 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=65.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcC--cEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA--SQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g--~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..++|||+||++++|+++|+++|+.| | .|+.++ .+||||||+|.+.++|++||+.|||..|. |
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~---G 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---G 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT----TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT---T
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH----CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC---C
Confidence 57899999999999999999999999 8 674432 23699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|.+++...
T Consensus 140 r~l~V~~a~~~~ 151 (229)
T 3q2s_C 140 QNPVVTPVNKQF 151 (229)
T ss_dssp BCCEEEECCHHH
T ss_pred EEeEEEECCCCc
Confidence 999999996554
No 334
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=4e-15 Score=104.96 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=58.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 51 ~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
||||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++ +++..+. |+.|+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~---g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF----GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVG---LSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH----SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBT---TBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeEC---CEEEEE
Confidence 69999999999999999999999 8874431 236999999999999999999 5888888 899999
Q ss_pred EEc
Q 021857 123 EMA 125 (306)
Q Consensus 123 ~~a 125 (306)
.+|
T Consensus 73 ~~a 75 (75)
T 1iqt_A 73 KVA 75 (75)
T ss_dssp EEC
T ss_pred EEC
Confidence 875
No 335
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=9.3e-15 Score=125.64 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHHhhcCCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCcee---
Q 021857 47 DEVRTIFITGLPDDV---------KERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIF--- 112 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~---------tee~L~~~f~~~~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~--- 112 (306)
..+++|||+||+..+ ||++|+++|+.| |.|..| -.+||||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 468999999999998 799999999999 999554 46789999999999999999999999999
Q ss_pred ---------CCCCCCeEEEEEccccch
Q 021857 113 ---------DAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 113 ---------~~~~g~~i~V~~a~~~~~ 130 (306)
. |+.|.|.||+....
T Consensus 208 ~~~e~~~~~~---gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRRE---GTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGG---SCCCEEEECC----
T ss_pred ccccccccCC---CCEEEEEEccCCCC
Confidence 5 89999999976543
No 336
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=110.01 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=62.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
.+.++|||+|||+++|++||+++|+.| ......+... ..+|||||+|.+.++|++|| .|||..|. ||.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI---QRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET---TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEEE
Confidence 346899999999999999999999998 3221112111 24799999999999999999 59999998 8999998
Q ss_pred Eccccc
Q 021857 124 MAKKNL 129 (306)
Q Consensus 124 ~a~~~~ 129 (306)
.+..+.
T Consensus 89 ~a~~~~ 94 (109)
T 2dnn_A 89 PATERQ 94 (109)
T ss_dssp ECCHHH
T ss_pred ECCccc
Confidence 885443
No 337
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=7.8e-15 Score=122.94 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=69.0
Q ss_pred CCEEEEcCCCC-CCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 223 CNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 223 ~~tLfV~NLp~-~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
+++|||+|||. ++++++|+++|+.||.|.+|+++.+. +|||||+|.+.++|.+|++.|||..|.| ..++| |++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG-KPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSS-CCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecC-eEEEEEEecCC
Confidence 68999999999 99999999999999999999999654 5899999999999999999999999985 57999 98754
No 338
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.54 E-value=1.7e-14 Score=135.38 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-E
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-R 295 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~ 295 (306)
.+.++|||+|||..+|+++|.++|+.||.|+.|+|+.+. .+|||||+|.+.++|.+||..|||..|.| ..|.| |
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g-r~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG-RRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence 357899999999999999999999999999999998642 24999999999999999999999999984 57999 9
Q ss_pred eeC
Q 021857 296 IQY 298 (306)
Q Consensus 296 ~k~ 298 (306)
++.
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 874
No 339
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=111.63 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=56.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEec-------CCcceEEEEECCHHHHHHHHHHh---CCcee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ-------ERHTVCFIEFEDVNSASSVHHNL---QGAVI 286 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~-------~~~g~aFV~F~~~~~A~~Ai~~l---nG~~i 286 (306)
..++|||+|||.++|+++|+++|+.||.|. ++++.+ ..+|||||+|.+.++|++||+.| ||..|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 468899999999999999999999999998 777643 22599999999999999999998 77644
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.7e-15 Score=107.61 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=60.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCcee--CCCCCCeEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIF--DAETKSVLH 121 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~--~~~~g~~i~ 121 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..||||||+|.+.++|++| ++..+ . |+.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~---g~~l~ 71 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIK---GISVH 71 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEET---TEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeC---CEEEE
Confidence 467999999999999999999999999 8885442 4589999999999999754 44444 5 79999
Q ss_pred EEEccccch
Q 021857 122 TEMAKKNLF 130 (306)
Q Consensus 122 V~~a~~~~~ 130 (306)
|.+++.+..
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999866543
No 341
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.53 E-value=1.4e-14 Score=118.49 Aligned_cols=76 Identities=21% Similarity=0.420 Sum_probs=65.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC------CcceEEEEECCHHHHHHHHHHhCCceeCCC--Ccee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE------RHTVCFIEFEDVNSASSVHHNLQGAVIPSS--GSVG 293 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~------~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~--~~~~ 293 (306)
+.++|||+|||.++|+++|+++|+.||.|.+|+++.+. .+|||||+|.+.++|.+|++.|||..+.++ ..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999653 248999999999999999999999988644 3344
Q ss_pred E-Eee
Q 021857 294 M-RIQ 297 (306)
Q Consensus 294 i-~~k 297 (306)
+ +++
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 4 544
No 342
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=3e-15 Score=118.54 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=62.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
....++|||+|||+++||+||+++|+.| |.+ +.+. ..||||||+|.+.++|++|| .+|+..|. ||.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~----Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~---gR~ 114 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ---HRY 114 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSC----CCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS---SCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC---CEE
Confidence 3567899999999999999999999999 622 2221 24699999999999999999 68999998 899
Q ss_pred EEEEEcccc
Q 021857 120 LHTEMAKKN 128 (306)
Q Consensus 120 i~V~~a~~~ 128 (306)
|+|.++...
T Consensus 115 i~V~~a~~~ 123 (139)
T 2hgn_A 115 IELFLNSTT 123 (139)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999987544
No 343
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=2.2e-14 Score=121.49 Aligned_cols=77 Identities=13% Similarity=0.282 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC----CcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~----~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++|+++|+++|+.||.|.+|+++.+. .+|||||+|.+.++|.+|++.|||..|.|. .++| ++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR-NIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C-CCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe-eEEEecC
Confidence 36899999999999999999999999999999998643 359999999999999999999999999954 7888 76
Q ss_pred eCC
Q 021857 297 QYP 299 (306)
Q Consensus 297 k~~ 299 (306)
++.
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 344
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=4.2e-14 Score=117.96 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Ee
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RI 296 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~ 296 (306)
+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+.. +|||||+|.+.++|.+||+. +|..|.| ..++| ++
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g-~~l~v~~~ 89 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG-RVVEPKRA 89 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT-EECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC-EEeeeecc
Confidence 578999999999999999999999999999999997543 48999999999999999987 9999984 47888 76
Q ss_pred eC
Q 021857 297 QY 298 (306)
Q Consensus 297 k~ 298 (306)
..
T Consensus 90 ~~ 91 (196)
T 1l3k_A 90 VS 91 (196)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 345
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=4e-14 Score=116.10 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|||..|. |+.|+|.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~ 169 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSLY 169 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET---TEEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEE
Confidence 457899999999999999999999999 8886552 34699999999999999999999999998 8999999
Q ss_pred Ecccc
Q 021857 124 MAKKN 128 (306)
Q Consensus 124 ~a~~~ 128 (306)
|++++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99765
No 346
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=111.71 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=63.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEe---eC--CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY---KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~---~~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
...++|||+|||+++|++||+++|+.|+...|.| +.+ ++ .+|||||+|.+.++|++||+. ++..|. ||.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~---gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG---KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC---CeE
Confidence 4578999999999999999999999993321111 222 12 369999999999999999995 998888 899
Q ss_pred EEEEEccccc
Q 021857 120 LHTEMAKKNL 129 (306)
Q Consensus 120 i~V~~a~~~~ 129 (306)
|+|..+..+.
T Consensus 97 i~V~~a~~~e 106 (123)
T 2dha_A 97 IELFRSTAAE 106 (123)
T ss_dssp ECCEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999885443
No 347
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=1.1e-14 Score=109.03 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=64.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++ +|..|. |+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~---g~~ 77 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY----GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH---GKK 77 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC---CEE
Confidence 457899999999999999999999999 8885442 136999999999999999999 898898 899
Q ss_pred EEEEEccccc
Q 021857 120 LHTEMAKKNL 129 (306)
Q Consensus 120 i~V~~a~~~~ 129 (306)
|.|.++..+.
T Consensus 78 l~v~~a~~~~ 87 (102)
T 2xs2_A 78 LKLGPAIRKQ 87 (102)
T ss_dssp CEEEEEEECC
T ss_pred EEEEECCcCc
Confidence 9999986543
No 348
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=9.3e-14 Score=130.31 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=68.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+.+|+++|+.+|+.| |.|+.|. ..+|||||+|.+.++|..||+.|||..|. |
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~---g 171 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVY----GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID---G 171 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC---C
Confidence 4567899999999999999999999999 8884442 13699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|.|.|++...
T Consensus 172 r~i~V~~a~~~~ 183 (437)
T 3pgw_S 172 RRVLVDVERGRT 183 (437)
T ss_pred EEEEEEEeCCCC
Confidence 999999997553
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.48 E-value=4.1e-14 Score=110.00 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=60.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE---EEee-----CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ---VNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i---v~~~-----~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
...++|||+|||+++||++|+++|+.| +.+ +.+. ..||||||+|.+.++|++|++ +++..|. ||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~----~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~---gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL----EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG---HR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS----CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT---TB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC----CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC---CE
Confidence 356899999999999999999999999 432 2221 247999999999999999999 5778888 89
Q ss_pred eEEEEEccc
Q 021857 119 VLHTEMAKK 127 (306)
Q Consensus 119 ~i~V~~a~~ 127 (306)
.|+|.++..
T Consensus 112 ~I~V~~a~~ 120 (126)
T 2hgm_A 112 YIEVFKSSQ 120 (126)
T ss_dssp CCCCEEECH
T ss_pred EEEEEECCH
Confidence 999988743
No 350
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.48 E-value=9.7e-14 Score=116.20 Aligned_cols=74 Identities=8% Similarity=0.147 Sum_probs=64.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQY 298 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~ 298 (306)
.++|||+|||.++|+++|+++|+.||.|.+|+|..+.. +|||||+|++.++|.+|+..++ ..|.| ..++| +.+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G-r~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE-TDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT-EECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC-EEEEEEEhHH
Confidence 58999999999999999999999999999999986433 3999999999999999998775 48884 47888 6543
No 351
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.7e-14 Score=107.88 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=64.5
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhccCCCceEEEEEecCC----cceEEEEECC----HHH----HHHHHH--HhCCce
Q 021857 224 NTLFIGNL----GESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFED----VNS----ASSVHH--NLQGAV 285 (306)
Q Consensus 224 ~tLfV~NL----p~~~t~e~L~~~F~~~G~i~~vkl~~~~~----~g~aFV~F~~----~~~----A~~Ai~--~lnG~~ 285 (306)
..|||+|| |+.+++++|+++|+.||.|.+++++.++. .|||||+|.| +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 56999999 99999999999999999999999997664 3999999996 433 899999 899999
Q ss_pred eCCCCceeE-EeeCC
Q 021857 286 IPSSGSVGM-RIQYP 299 (306)
Q Consensus 286 i~~~~~~~i-~~k~~ 299 (306)
|.|. .++| +-++=
T Consensus 83 I~Gr-~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGF-KFEVILNKHS 96 (136)
T ss_dssp ETTE-EEEEEECCTT
T ss_pred ecCc-EEEEEECccc
Confidence 9955 7999 87653
No 352
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=9.6e-14 Score=121.67 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-EeeCC
Q 021857 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQYP 299 (306)
Q Consensus 221 ~~~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k~~ 299 (306)
.+.++|||+|||.++|+++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|+..|||..|.| ..++| |++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKS-RPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECC-ceeEeeecccC
Confidence 3578999999999999999999999999999999974 35899999999999999999999999984 57999 88653
No 353
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=1.1e-13 Score=104.38 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=63.5
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHhhccCCCceEEEEEecC------CcceEEEEECCHHHHHHHHHHhCCc
Q 021857 221 PPCNTLFIGNL--GESIN--------EEELRGLFSAQPGFKQMKVLRQE------RHTVCFIEFEDVNSASSVHHNLQGA 284 (306)
Q Consensus 221 ~~~~tLfV~NL--p~~~t--------~e~L~~~F~~~G~i~~vkl~~~~------~~g~aFV~F~~~~~A~~Ai~~lnG~ 284 (306)
.|+++|.|.|+ +.++. +++|++.|++||.|.+|+|+.+. .+|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999999 43443 37999999999999999998643 2499999999999999999999999
Q ss_pred eeCCCCceeE-Ee
Q 021857 285 VIPSSGSVGM-RI 296 (306)
Q Consensus 285 ~i~~~~~~~i-~~ 296 (306)
.+.|+ .++| |.
T Consensus 83 ~f~GR-~i~v~~~ 94 (105)
T 3v4m_A 83 KFANR-VVVTKYC 94 (105)
T ss_dssp EETTE-ECEEEEE
T ss_pred EeCCC-EEEEEEe
Confidence 99954 7888 54
No 354
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=3.3e-13 Score=112.64 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---C-----CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~-----~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
..+.++|||+|||+++|+++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..|. |
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~----G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 183 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSF----GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG---D 183 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTB----SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 3568999999999999999999999999 8884442 1 2699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 021857 118 SVLHTEMAKKNL 129 (306)
Q Consensus 118 ~~i~V~~a~~~~ 129 (306)
+.|+|.|++.+.
T Consensus 184 ~~l~v~~a~~~~ 195 (198)
T 2yh0_A 184 KKLLVQRASVGA 195 (198)
T ss_dssp EECEEEESCCCC
T ss_pred EEEEEEECCCCC
Confidence 999999996653
No 355
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=6.7e-14 Score=126.53 Aligned_cols=77 Identities=10% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC--C--cee
Q 021857 220 NPPCNTLFIGN--LGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS--G--SVG 293 (306)
Q Consensus 220 ~~~~~tLfV~N--Lp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~--~--~~~ 293 (306)
..|+++|||+| |+..+|+++|+++|++||.|++|++.+ ++|||||+|.+.++|.+||+.|||.++.+. . .+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 34689999999 578999999999999999999998864 459999999999999999999999999422 2 355
Q ss_pred E-EeeC
Q 021857 294 M-RIQY 298 (306)
Q Consensus 294 i-~~k~ 298 (306)
| |.+.
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 5 7743
No 356
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=1.4e-13 Score=112.40 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=64.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee---C-----CcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~---~-----~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
..++|||+|||.++|+++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..+. |+.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 165 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSF----GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKK 165 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET---TEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhc----CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC---CeE
Confidence 37899999999999999999999999 8885442 1 2699999999999999999999999998 899
Q ss_pred EEEEEc
Q 021857 120 LHTEMA 125 (306)
Q Consensus 120 i~V~~a 125 (306)
|+|+||
T Consensus 166 l~V~~A 171 (172)
T 2g4b_A 166 LLVQRA 171 (172)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
No 357
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=9.6e-14 Score=112.74 Aligned_cols=73 Identities=15% Similarity=0.320 Sum_probs=64.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
+.++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++ ++|..+. |+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~ 157 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQW----GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK---DRK 157 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTT----SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS---SSC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhC----ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC---CeE
Confidence 46799999999999999999999999 8874432 236999999999999999998 8999998 899
Q ss_pred EEEEEcccc
Q 021857 120 LHTEMAKKN 128 (306)
Q Consensus 120 i~V~~a~~~ 128 (306)
|+|.|++++
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999764
No 358
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=2.2e-13 Score=123.09 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=67.2
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHHhhcCCCcCcEEEee--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC--
Q 021857 45 AHDEVRTIFITG--LPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS-- 118 (306)
Q Consensus 45 ~~~~~~~LfV~n--Lp~~~tee~L~~~f~~~~~~~g~iv~~~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~-- 118 (306)
...+.++|||+| |++.+||++|+++|++| |.|..+. .+||||||+|.+.++|++|++.|||..+....|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 457889999999 57899999999999999 9885553 5789999999999999999999999998544466
Q ss_pred eEEEEEcc
Q 021857 119 VLHTEMAK 126 (306)
Q Consensus 119 ~i~V~~a~ 126 (306)
+|+|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888884
No 359
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=3.8e-13 Score=103.37 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHhhccCCCceEEEEEecCC--------cceEEEEECCHHHHHHHHHHhCCceeCC
Q 021857 222 PCNTLFIGNLGE--SI---NEEELRGLFSAQPGFKQMKVLRQER--------HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (306)
Q Consensus 222 ~~~tLfV~NLp~--~~---t~e~L~~~F~~~G~i~~vkl~~~~~--------~g~aFV~F~~~~~A~~Ai~~lnG~~i~~ 288 (306)
++++|+|.|+-. ++ -+++|++.|++||.|.+|+|+.+.. +|++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 589999999942 22 3689999999999999999996532 2899999999999999999999999995
Q ss_pred CCceeE-Ee
Q 021857 289 SGSVGM-RI 296 (306)
Q Consensus 289 ~~~~~i-~~ 296 (306)
+ .++| |.
T Consensus 99 R-~i~v~~~ 106 (118)
T 3ue2_A 99 R-KVVAEVY 106 (118)
T ss_dssp E-ECEEEEE
T ss_pred c-EEEEEEc
Confidence 4 7888 54
No 360
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=103.70 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=57.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEE-Ee-e--------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV-NY-K--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv-~~-~--------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~ 116 (306)
...++|||+|||+++|+++|+++|+.| |.|. .+ . ..||||||+|.+.++|++|++.|++ +.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~--- 76 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRF----GPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED--- 76 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTT----CCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET---
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC---
Confidence 457999999999999999999999999 7663 22 1 2379999999999999999999843 55
Q ss_pred CCeEEEEEc
Q 021857 117 KSVLHTEMA 125 (306)
Q Consensus 117 g~~i~V~~a 125 (306)
|+.|.+..+
T Consensus 77 G~~~~~~~~ 85 (114)
T 2dnl_A 77 GKLYLCVSS 85 (114)
T ss_dssp TEEEEEECC
T ss_pred CcEEEeccC
Confidence 677777654
No 361
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=6.3e-13 Score=100.08 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHhhcCCCcCcEEEe---e------CCcCeEEEEeCCHHHHHHHHHHhcCcee
Q 021857 47 DEVRTIFITGLPD-----DVKERELQNLLRWLPGYEASQVNY---K------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (306)
Q Consensus 47 ~~~~~LfV~nLp~-----~~tee~L~~~f~~~~~~~g~iv~~---~------~~kg~aFV~F~~~~~A~~Al~~l~g~~~ 112 (306)
.+.++|+|+||.. +-+++||++.|++| |.|..+ + .++|+|||+|.+.++|.+|++.|||..|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 5789999999963 24789999999999 988444 1 2379999999999999999999999999
Q ss_pred CCCCCCeEEEEEccccch
Q 021857 113 DAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 113 ~~~~g~~i~V~~a~~~~~ 130 (306)
. ||.|+|.|+.....
T Consensus 82 ~---Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 82 G---GRVVKACFYNLDKF 96 (105)
T ss_dssp T---TEECEEEECCHHHH
T ss_pred C---CcEEEEEEcCHHHh
Confidence 8 99999999966443
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.7e-13 Score=101.56 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=63.9
Q ss_pred CCCceEEEcCCCCCC-----------CHHHHHHHHhhcCCCcCcEEE--e--eCCcCeEEEEeCCHHHHHHHHHHhcCce
Q 021857 47 DEVRTIFITGLPDDV-----------KERELQNLLRWLPGYEASQVN--Y--KGEKPMGFALFSTAQLAVAAKDALQEMI 111 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~-----------tee~L~~~f~~~~~~~g~iv~--~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~ 111 (306)
.+.++|+|+||-... ++++|+++|++| |.|.. | +..+|||||+|.+.++|++|++.|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 468999999994332 268999999999 77733 2 2457999999999999999999999999
Q ss_pred eCCCCCCeEEEEEccccch
Q 021857 112 FDAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 112 ~~~~~g~~i~V~~a~~~~~ 130 (306)
|. |+.|+|.|+..+..
T Consensus 89 ~~---gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FG---GRQITAQAWDGTTD 104 (112)
T ss_dssp ET---TEECEEEECCSCCC
T ss_pred EC---CcEEEEEEeCCCCC
Confidence 98 89999999966543
No 363
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.40 E-value=5.9e-13 Score=111.40 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=63.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i 120 (306)
..++|||+|||+++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.++ ..+. |+.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~---Gr~l 179 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK---ETDL 179 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTS----CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET---TEEC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcC----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC---CEEE
Confidence 46899999999999999999999999 8885442 236999999999999999998664 5787 8999
Q ss_pred EEEEccccc
Q 021857 121 HTEMAKKNL 129 (306)
Q Consensus 121 ~V~~a~~~~ 129 (306)
+|.+++.-.
T Consensus 180 ~V~~~~~y~ 188 (193)
T 2voo_A 180 LILFKDDYF 188 (193)
T ss_dssp EEEETTTC-
T ss_pred EEEEhHHHH
Confidence 999986544
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=1.3e-12 Score=99.78 Aligned_cols=75 Identities=8% Similarity=0.150 Sum_probs=63.1
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCc
Q 021857 222 PCNTLFIGNLGESI----------NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (306)
Q Consensus 222 ~~~tLfV~NLp~~~----------t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~ 291 (306)
++++|.|.|+=..- -+++|++.|++||.|.+|+|.++..+|+|||+|.+.++|.+|++.|||..+.|+ .
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR-~ 84 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK-M 84 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE-E
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-E
Confidence 57899999993221 136889999999999999998655569999999999999999999999999954 7
Q ss_pred eeE-Eee
Q 021857 292 VGM-RIQ 297 (306)
Q Consensus 292 ~~i-~~k 297 (306)
++| |+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 888 653
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.2e-12 Score=95.16 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=61.5
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-
Q 021857 223 CNTLFIGNLG-------ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM- 294 (306)
Q Consensus 223 ~~tLfV~NLp-------~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i- 294 (306)
..+|.|.-.. .++++++|+++|++||.|.+|+|+. ..+|||||+|++.++|..||+.++|. . +.+|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~~--~-g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVGL--V-DNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCBC--S-SSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCCC--C-CCeEEEE
Confidence 4567776554 4589999999999999999999984 55699999999999999999997764 4 458999
Q ss_pred EeeCCc
Q 021857 295 RIQYPF 300 (306)
Q Consensus 295 ~~k~~~ 300 (306)
|++.+-
T Consensus 86 ~a~~~~ 91 (100)
T 2d9o_A 86 WLEGQP 91 (100)
T ss_dssp CSSCCC
T ss_pred EccCCC
Confidence 988764
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=4.7e-13 Score=100.66 Aligned_cols=68 Identities=10% Similarity=0.163 Sum_probs=56.5
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCCceEEEEEecCC---cceEEEEECCHHHHHHHHHHhCCceeCCCCce
Q 021857 228 IGNLGESINEEELRGLF------------SAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (306)
Q Consensus 228 V~NLp~~~t~e~L~~~F------------~~~G~i~~vkl~~~~~---~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~ 292 (306)
+.||++.+++++|++.| ++||.|.+|+|+.+.. +|||||+|.+.++|.+|+..|||..+.|+ .+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr-~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ-PI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE-EC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE-EE
Confidence 45666667777777666 9999999999996542 49999999999999999999999999954 78
Q ss_pred eE-Ee
Q 021857 293 GM-RI 296 (306)
Q Consensus 293 ~i-~~ 296 (306)
+| |+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 88 75
No 367
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.4e-12 Score=100.13 Aligned_cols=73 Identities=7% Similarity=0.063 Sum_probs=60.0
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCCCcCcEEEe--e------CCcCeEEEEeCC----HHH----HHHHHH--Hh
Q 021857 50 RTIFITGL----PDDVKERELQNLLRWLPGYEASQVNY--K------GEKPMGFALFST----AQL----AVAAKD--AL 107 (306)
Q Consensus 50 ~~LfV~nL----p~~~tee~L~~~f~~~~~~~g~iv~~--~------~~kg~aFV~F~~----~~~----A~~Al~--~l 107 (306)
.+|||+|| |+.+++++|+++|+.| |.|..+ . .++|||||+|.| .++ |.+|+. .|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f----GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY----GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT----SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 68999999 9999999999999999 887333 1 236999999996 433 788988 78
Q ss_pred cCceeCCCCCCeEEEEEccccc
Q 021857 108 QEMIFDAETKSVLHTEMAKKNL 129 (306)
Q Consensus 108 ~g~~~~~~~g~~i~V~~a~~~~ 129 (306)
+|..|+ |+.|+|++-+...
T Consensus 79 ng~~I~---Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 79 SGCFIM---GFKFEVILNKHSI 97 (136)
T ss_dssp TCEEET---TEEEEEEECCTTH
T ss_pred cCCeec---CcEEEEEECcccH
Confidence 999999 9999999976543
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=1.3e-11 Score=92.78 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=63.7
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHHhhcCCCcCcEEEee----------CCcCeEEEEeCCHHHHHHHHHH
Q 021857 47 DEVRTIFITGL--PDDVK--------ERELQNLLRWLPGYEASQVNYK----------GEKPMGFALFSTAQLAVAAKDA 106 (306)
Q Consensus 47 ~~~~~LfV~nL--p~~~t--------ee~L~~~f~~~~~~~g~iv~~~----------~~kg~aFV~F~~~~~A~~Al~~ 106 (306)
.|.+.|.|.|+ +.++. ++||++.|++| |.|..++ .++|+|||+|.+.++|++|++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH
Confidence 46889999998 44443 47999999999 9996552 1369999999999999999999
Q ss_pred hcCceeCCCCCCeEEEEEccccc
Q 021857 107 LQEMIFDAETKSVLHTEMAKKNL 129 (306)
Q Consensus 107 l~g~~~~~~~g~~i~V~~a~~~~ 129 (306)
|||..+. ||.|+|.|.....
T Consensus 79 lnG~~f~---GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 79 LTGRKFA---NRVVVTKYCDPDS 98 (105)
T ss_dssp HTTCEET---TEECEEEEECHHH
T ss_pred hCCCEeC---CCEEEEEEeCHHH
Confidence 9999998 9999999985543
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.8e-11 Score=89.34 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=59.1
Q ss_pred CceEEEcCCC-------CCCCHHHHHHHHhhcCCCcCcEEEe---eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 49 VRTIFITGLP-------DDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 49 ~~~LfV~nLp-------~~~tee~L~~~f~~~~~~~g~iv~~---~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
.++|-|.-.. ..+|+++|+++|+.| |.|+.+ +..||||||+|.+.++|+.|++.+++ +. |+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~----G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~---g~ 80 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY----GEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LV---DN 80 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT----SCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CS---SS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhc----CCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CC---CC
Confidence 5677777665 459999999999999 988554 35689999999999999999997554 45 79
Q ss_pred eEEEEEccccc
Q 021857 119 VLHTEMAKKNL 129 (306)
Q Consensus 119 ~i~V~~a~~~~ 129 (306)
+|+|.|++...
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999986554
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.23 E-value=4.1e-12 Score=95.46 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=54.8
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCCcCcEEEee-------CCcCeEEEEeCCHHHHHHHHHHhcCceeCC
Q 021857 54 ITGLPDDVKERELQNLL------------RWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (306)
Q Consensus 54 V~nLp~~~tee~L~~~f------------~~~~~~~g~iv~~~-------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~ 114 (306)
+.||++.+|+++|++.| ++| |.|..++ .++|||||+|.+.++|++|++.|||..+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~----G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~- 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY----GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN- 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC----CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 56677778888887777 888 9985552 23799999999999999999999999998
Q ss_pred CCCCeEEEEEc
Q 021857 115 ETKSVLHTEMA 125 (306)
Q Consensus 115 ~~g~~i~V~~a 125 (306)
||.|+|+|+
T Consensus 95 --Gr~i~v~~s 103 (104)
T 1jmt_A 95 --GQPIHAELS 103 (104)
T ss_dssp --TEECCEEEC
T ss_pred --CEEEEEEEc
Confidence 999999986
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=87.68 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCCCCCEEEEcCCCC----CCCH----HHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCC
Q 021857 219 DNPPCNTLFIGNLGE----SINE----EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~----~~t~----e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~ 290 (306)
.+||..||+|...+. +.-+ .+|.+.|++||.|..+|++. +.+||+|++.++|.+||+ |||+.|.|+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr- 76 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE----DKMWVTFLEGSSALNVLS-LNGKELLNR- 76 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS----SSEEEEESSHHHHHHGGG-GTTCEETTE-
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec----CCEEEEECChHHHHHHHh-cCCeEeCCe-
Confidence 356788999988762 2333 67889999999999999996 238999999999999998 999999954
Q ss_pred ceeE-EeeC
Q 021857 291 SVGM-RIQY 298 (306)
Q Consensus 291 ~~~i-~~k~ 298 (306)
.++| +.+.
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 7999 7653
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.21 E-value=3.2e-11 Score=92.58 Aligned_cols=76 Identities=20% Similarity=0.152 Sum_probs=62.6
Q ss_pred CCCceEEEcCCCC--CC---CHHHHHHHHhhcCCCcCcEEEee------C------CcCeEEEEeCCHHHHHHHHHHhcC
Q 021857 47 DEVRTIFITGLPD--DV---KERELQNLLRWLPGYEASQVNYK------G------EKPMGFALFSTAQLAVAAKDALQE 109 (306)
Q Consensus 47 ~~~~~LfV~nLp~--~~---tee~L~~~f~~~~~~~g~iv~~~------~------~kg~aFV~F~~~~~A~~Al~~l~g 109 (306)
.+.++|+|+|+-. ++ .++||++.|++| |.|..+. + ++|++||+|.+.++|.+|++.|||
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 4689999999942 22 368999999999 8885441 1 249999999999999999999999
Q ss_pred ceeCCCCCCeEEEEEccccc
Q 021857 110 MIFDAETKSVLHTEMAKKNL 129 (306)
Q Consensus 110 ~~~~~~~g~~i~V~~a~~~~ 129 (306)
..|. ||.|+|.|+....
T Consensus 94 r~f~---GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 94 RWFA---GRKVVAEVYDQER 110 (118)
T ss_dssp CEET---TEECEEEEECHHH
T ss_pred CEEC---CcEEEEEEcChHh
Confidence 9998 9999999985543
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=6.4e-11 Score=90.63 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHhhccCCCceEEEEEecCCcceEEEEECC-HHHHHHHHHHhC--CceeCCCCceeE
Q 021857 219 DNPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFED-VNSASSVHHNLQ--GAVIPSSGSVGM 294 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~-~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~-~~~A~~Ai~~ln--G~~i~~~~~~~i 294 (306)
..+++..|||+||+.+ +++++|+++|+.||.|.+|++..+. ..|||.|.+ ..+|..|+..|| |..|.+ ..+++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g-~~~~~ 90 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKDANNGNLQLRN-KEVTW 90 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHHTTTSCBCTTS-SSEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHHhhcCCcEEeC-cEEEE
Confidence 3456899999999999 9999999999999999999998644 479999999 899999999995 677775 34443
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=8.9e-11 Score=89.46 Aligned_cols=77 Identities=8% Similarity=0.064 Sum_probs=61.3
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHHHhhcCCCcCcEEEee----CCcCeEEEEeCCHHHHHHHHHHhcCcee
Q 021857 47 DEVRTIFITGLPDDV----------KERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~----------tee~L~~~f~~~~~~~g~iv~~~----~~kg~aFV~F~~~~~A~~Al~~l~g~~~ 112 (306)
.+.+.|.+.|+=..- .++||++.|++| |.|..+. ..+|+|||+|.+.++|++|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf----G~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH----GGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT----TCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc----CCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 357899999993221 234778888888 8874432 3479999999999999999999999999
Q ss_pred CCCCCCeEEEEEccccch
Q 021857 113 DAETKSVLHTEMAKKNLF 130 (306)
Q Consensus 113 ~~~~g~~i~V~~a~~~~~ 130 (306)
. ||.|+|+|+.....
T Consensus 81 ~---GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 81 A---GKMITAAYVPLPTY 95 (114)
T ss_dssp T---TEECEEEEECHHHH
T ss_pred C---CEEEEEEEEcHHHH
Confidence 8 99999999865544
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=3.2e-10 Score=81.92 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=59.1
Q ss_pred CCCCCCEEEEcCCCCC------CCH---HHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 219 DNPPCNTLFIGNLGES------INE---EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 219 ~~~~~~tLfV~NLp~~------~t~---e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
.+||..||+|..++.. .++ .+|.+.|+.||.|..+|++.+. +||+|.+.++|.+||+ |||..|.|+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 5677899999988742 332 5688999999999999999632 9999999999999999 999999955
Q ss_pred CceeE
Q 021857 290 GSVGM 294 (306)
Q Consensus 290 ~~~~i 294 (306)
.++|
T Consensus 86 -~L~V 89 (95)
T 1ufw_A 86 -AVKI 89 (95)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 6888
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-09 Score=78.00 Aligned_cols=73 Identities=8% Similarity=0.054 Sum_probs=59.9
Q ss_pred CCCceEEEcCCC----CCCCH----HHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 021857 47 DEVRTIFITGLP----DDVKE----RELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (306)
Q Consensus 47 ~~~~~LfV~nLp----~~~te----e~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~ 118 (306)
++..||+|.-++ ..+-. .+|.+.|+.| |.|+.++--.+.+||+|.+.++|.+|++ |||..+. ||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~---Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELL---NR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEET---TE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeC---Ce
Confidence 567899999987 23444 5677888888 9887766444559999999999999999 9999999 99
Q ss_pred eEEEEEccc
Q 021857 119 VLHTEMAKK 127 (306)
Q Consensus 119 ~i~V~~a~~ 127 (306)
.|+|+++++
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999853
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=5.6e-09 Score=79.81 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhhcCCCcCcEE--EeeCCcCeEEEEeCC-HHHHHHHHHHhc--CceeCCCCCCeE
Q 021857 47 DEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQV--NYKGEKPMGFALFST-AQLAVAAKDALQ--EMIFDAETKSVL 120 (306)
Q Consensus 47 ~~~~~LfV~nLp~~-~tee~L~~~f~~~~~~~g~iv--~~~~~kg~aFV~F~~-~~~A~~Al~~l~--g~~~~~~~g~~i 120 (306)
..++.|||+||++. +|+++|+++|+.| |.|. .+...+-.|||.|.+ .++|..|+..|| |..|. |..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~---g~~~ 88 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLR---NKEV 88 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTT---SSSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEe---CcEE
Confidence 46899999999999 9999999999999 9984 444566789999999 899999999995 66676 6888
Q ss_pred EEEEccc
Q 021857 121 HTEMAKK 127 (306)
Q Consensus 121 ~V~~a~~ 127 (306)
+++....
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 8887543
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=3.7e-08 Score=83.76 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCEEEEcCCC-----CCCCHHHHHHhhccCCCceEEEEEecC--------CcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 223 CNTLFIGNLG-----ESINEEELRGLFSAQPGFKQMKVLRQE--------RHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 223 ~~tLfV~NLp-----~~~t~e~L~~~F~~~G~i~~vkl~~~~--------~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
..++.+.|+- ..-.+++|++.|++||.|.+++|.++. ..|++||+|.+.++|.+|++.|||+.+.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4566666663 234568999999999999999998432 239999999999999999999999999965
Q ss_pred CceeE-Ee
Q 021857 290 GSVGM-RI 296 (306)
Q Consensus 290 ~~~~i-~~ 296 (306)
.+.+ |.
T Consensus 204 -~i~~~~~ 210 (222)
T 3dxb_A 204 -KVVAEVY 210 (222)
T ss_dssp -BCEEEEC
T ss_pred -EEEEEEc
Confidence 6888 54
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=2.3e-08 Score=72.24 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=56.4
Q ss_pred CCCceEEEcCCCCC-----CCH----HHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 47 DEVRTIFITGLPDD-----VKE----RELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 47 ~~~~~LfV~nLp~~-----~te----e~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
+|..||+|.-++.. +-. .+|.+.|+.| |.++.++--..-+||+|.+.++|.+|++ |+|..+. |
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~---G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVK---G 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEET---T
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeC---C
Confidence 67789999999743 333 5688888888 8774443222339999999999999999 9999999 8
Q ss_pred CeEEEEEc
Q 021857 118 SVLHTEMA 125 (306)
Q Consensus 118 ~~i~V~~a 125 (306)
|.|+|++.
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999874
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=8.1e-08 Score=70.76 Aligned_cols=69 Identities=10% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccC-----CCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQ-----PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~-----G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
.++|-+.|||..++++.++.+.+.| |.|+.+-++++- +-|+|+|.|...|.+|..+|||.+|.|. .+++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~gr-~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQGK-VIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEETTE-EEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeecCe-EEEe
Confidence 6889999999999999999999999 999999998644 5599999999999999999999999944 4554
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.40 E-value=3.8e-07 Score=77.41 Aligned_cols=63 Identities=19% Similarity=0.047 Sum_probs=52.8
Q ss_pred CCHHHHHHHHhhcCCCcCcEEEee------------CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 021857 61 VKERELQNLLRWLPGYEASQVNYK------------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (306)
Q Consensus 61 ~tee~L~~~f~~~~~~~g~iv~~~------------~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~a~~~ 128 (306)
-.+++|++.|++| |.|..+. .++|++||+|.+.++|++|++.|||..+. ||+|++.|....
T Consensus 141 e~~~dl~~e~~~~----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~---gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA---GRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTT----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCEEEECCHH
T ss_pred HHHHHHHHHHHcc----CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC---CeEEEEEEcCHH
Confidence 4567899999999 8884441 23599999999999999999999999998 999999998644
Q ss_pred ch
Q 021857 129 LF 130 (306)
Q Consensus 129 ~~ 130 (306)
..
T Consensus 214 ~f 215 (222)
T 3dxb_A 214 RF 215 (222)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=9.1e-06 Score=59.90 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc-CCCcCcEEEe--eCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWL-PGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~-~~~~g~iv~~--~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~ 123 (306)
+..|+|=+=|||..+++..++.+++.+ ...+|.++++ ..+-+=|+|+|.|...|.+|.-.|+|..|. ||.|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~---gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ---GKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET---TEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec---CeEEEec
Confidence 347899999999999999999999988 4567777555 566788999999999999999899999999 8999987
Q ss_pred Ec
Q 021857 124 MA 125 (306)
Q Consensus 124 ~a 125 (306)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=5.5e-06 Score=60.81 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=60.2
Q ss_pred CEEEEcCCCCCC-CH----HHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 224 NTLFIGNLGESI-NE----EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 224 ~tLfV~NLp~~~-t~----e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
.+|+|-||+.++ +. +.++++|..|+.+........-+ -..|.|.+.++|.+|...|||..+.|. +++| |+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~-~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK-EMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE-ECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc-eeEEEecC
Confidence 579999998754 32 56789999999998888886554 379999999999999999999999955 7999 886
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=7.7e-06 Score=60.00 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCC-CHH----HHHHHHhhcCCCcCcEEEee--CCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 021857 50 RTIFITGLPDDV-KER----ELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (306)
Q Consensus 50 ~~LfV~nLp~~~-tee----~L~~~f~~~~~~~g~iv~~~--~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V 122 (306)
.+|+|.||+.++ +.+ .++++|..+ +.++.+. .+=.-..|.|.+.++|.+|...|++..+. |+.|+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~----~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~---g~~~r~ 78 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY----DKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFL---GKEMKL 78 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT----CSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEET---TEECEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh----CcCcceeecCcceEEEEEeCChHHHHHHHHHhccceec---CceeEE
Confidence 689999998866 444 556777777 8775553 23246789999999999999999999998 899999
Q ss_pred EEcc
Q 021857 123 EMAK 126 (306)
Q Consensus 123 ~~a~ 126 (306)
-|+.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9985
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00027 Score=51.58 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=56.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLP-GYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~-~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~i~V~~ 124 (306)
.-.++|.|.|||..+.+|.|.-.|+.-. +=-|.+..+....+-|+|+|.+.+.|++.|+. ....|. |..|.|.-
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~---~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELH---GAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSS---SSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-Ccceec---CeEEEEEc
Confidence 4578999999999999999999999732 33367766654458999999999999998872 244555 56666643
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=0.00015 Score=52.93 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=54.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcc---CC--CceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE
Q 021857 222 PCNTLFIGNLGESINEEELRGLFSA---QP--GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (306)
Q Consensus 222 ~~~tLfV~NLp~~~t~e~L~~~F~~---~G--~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i 294 (306)
...+|.|.|||..++++.|.-.|+. -| .|.+|+... +-|+|+|.+.+.|++.++. .-+.|++ .++.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~-~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG-AQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS-SBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC-eEEEE
Confidence 3688999999999999999999987 33 588888874 4699999999999998874 3556664 46777
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.65 E-value=0.00017 Score=52.02 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=47.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
.++++| +.|..+-..||.++|+.||.| .|+.+. . .-|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid-D--TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-D--TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE-T--TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc-C--CeEEEEecCHHHHHHHHHhcc
Confidence 567777 999999999999999999976 566664 3 369999999999999999874
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00028 Score=50.76 Aligned_cols=66 Identities=14% Similarity=0.314 Sum_probs=57.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCC------cceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER------HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~------~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
..|.|++||..+||+++.+.++....+.....+.... ..-|+|.|.+.+++..-.+.++|+.+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 3589999999999999999999999888888774221 27899999999999999999999998654
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.63 E-value=5.6e-05 Score=54.69 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=47.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
.++|+| +.|..+-..||.++|+.||.| .|+.+. . .-|||.|.+++.|..|+..++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid-D--TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-D--TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE-T--TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc-C--CeEEEEecCHHHHHHHHHhcc
Confidence 466777 999999999999999999965 677774 3 369999999999999999875
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.55 E-value=0.00041 Score=49.87 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=55.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE--EEe-eCC-------cCeEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY-KGE-------KPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i--v~~-~~~-------kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g~~ 119 (306)
.+|.|++||+.+||+++.+.++.+ ..+ ... .+. -+.|+|.|.+.+++..-.+.++|..+....|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~ 77 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQE 77 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCE
Confidence 589999999999999999999987 443 222 111 178999999999999999999999984433432
Q ss_pred E--EEEEc
Q 021857 120 L--HTEMA 125 (306)
Q Consensus 120 i--~V~~a 125 (306)
. .|+||
T Consensus 78 ~~a~VE~A 85 (91)
T 1uw4_A 78 YPAIVEFA 85 (91)
T ss_dssp EECEEEEC
T ss_pred eeeEEEEc
Confidence 2 46666
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0014 Score=49.34 Aligned_cols=63 Identities=8% Similarity=0.035 Sum_probs=53.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
.+-|.|.+.|.. .-..|...|++||.|.+.... .+..+-.|+|.++.+|++||.. ||..|.++
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~ 86 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKALSK-DGRIFGES 86 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHHTT-TTCEETTT
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHHHh-CCeEecCC
Confidence 567889999886 467788999999999987763 3447999999999999999987 99999855
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.07 E-value=0.0013 Score=47.47 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=44.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEeeCCcCeEEEEeCCHHHHHHHHHHhc
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~~~~kg~aFV~F~~~~~A~~Al~~l~ 108 (306)
.+.++| ++|..+.-.||..+|+.| |-+ |++. +-..|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~f----ggv~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAF----GNIQISWI-DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTT----CSCCCEEE-ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhcc----CCEEEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 355667 999999999999999999 544 5553 24689999999999999999875
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.86 E-value=0.002 Score=46.62 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=54.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe------e----CC-cCeEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY------K----GE-KPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~------~----~~-kg~aFV~F~~~~~A~~Al~~l~g~~~~~~~g 117 (306)
.-+|.|+.||+.+||+++.+.++.+.. + .+ + .. -..|+|.|.+.++...-.+..+|..+....|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~----~-d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA----H-DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS----E-EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc----c-ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 458999999999999999888877632 2 22 1 11 1789999999999999999999999843334
Q ss_pred C--eEEEEEc
Q 021857 118 S--VLHTEMA 125 (306)
Q Consensus 118 ~--~i~V~~a 125 (306)
. +-.|+||
T Consensus 84 ~~~~a~VE~A 93 (97)
T 2l08_A 84 LEYPAVVEFA 93 (97)
T ss_dssp CEEEEEEEEC
T ss_pred CEeeeEEEec
Confidence 2 3346666
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.79 E-value=0.0014 Score=47.47 Aligned_cols=53 Identities=13% Similarity=0.293 Sum_probs=44.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCCcCcE-EEeeCCcCeEEEEeCCHHHHHHHHHHhc
Q 021857 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (306)
Q Consensus 50 ~~LfV~nLp~~~tee~L~~~f~~~~~~~g~i-v~~~~~kg~aFV~F~~~~~A~~Al~~l~ 108 (306)
+.++| ++|..+.-.||..+|+.| |-+ |++. +-..|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f----ggv~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF----GNIQISWI-DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS----EEEEEEEE-ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc----CCEEEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999 654 5554 34689999999999999999875
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.69 E-value=0.0026 Score=45.99 Aligned_cols=66 Identities=14% Similarity=0.296 Sum_probs=52.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecC------CcceEEEEECCHHHHHHHHHHhCCceeCCC
Q 021857 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE------RHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (306)
Q Consensus 224 ~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~------~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~ 289 (306)
-.|.|+.||..+||+++.+.++..-.+.+...+... .-.-|+|.|.+.++...-.+.++|+.+...
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 459999999999999998888876555554444211 016799999999999999999999998654
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.35 E-value=0.0019 Score=60.28 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHH
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ 280 (306)
.++|||. .+..+++.+|.+.|++||.|.++-+-. .++-||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHhc
Confidence 5889998 788999999999999999999988874 5558999999999999976543
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.90 E-value=0.04 Score=41.34 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=51.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeC--CcCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~--~kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
..+-|-|-++|... -+.+...|++| |.|++... ...+-.|.|.+..+|++||. .||..+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~----G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY----GNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT----SCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh----CcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 46789999999986 55667789999 99988753 56999999999999999999 7999886
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.58 E-value=0.0095 Score=45.43 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceE-EEEE----------------ec-CCcceEEEEECCHHHHHHHHHHhCCc
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVL----------------RQ-ERHTVCFIEFEDVNSASSVHHNLQGA 284 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~-vkl~----------------~~-~~~g~aFV~F~~~~~A~~Ai~~lnG~ 284 (306)
..-|.|.+.|... ...+.+.|++||.|.+ +.+. +- .+..+-.|+|++..+|.+|+.. ||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 3558888887754 4566788999999865 2111 00 0237889999999999999986 999
Q ss_pred eeCCC
Q 021857 285 VIPSS 289 (306)
Q Consensus 285 ~i~~~ 289 (306)
.|.|.
T Consensus 85 ii~G~ 89 (132)
T 3p3d_A 85 VFNGV 89 (132)
T ss_dssp EETTE
T ss_pred EeCcE
Confidence 99854
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.37 E-value=0.044 Score=51.07 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=39.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEe---eCCcCeEEEEeCCHHHHHHHHH
Q 021857 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKD 105 (306)
Q Consensus 46 ~~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~---~~~kg~aFV~F~~~~~A~~Al~ 105 (306)
+...|+|||. .+..+++.+|.+.|+.| |.|.++ +...-||.|+|++.+++..+++
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 3457899998 79999999999999999 888443 3334799999999999997765
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.09 E-value=0.26 Score=46.61 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=46.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~ln 282 (306)
..+|+|+ ++..+...+|.++|+.||.+ +|+.+. . ..|||.|.+.+.|..++.+++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-d--t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-D--TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-S--SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-C--CeEEEEECCHHHHHHHHHHHH
Confidence 4678887 88888999999999999965 667763 3 469999999999999999986
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.47 E-value=0.55 Score=35.68 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=52.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEE-ee---------------------CCcCeEEEEeCCHHHHHHHHH
Q 021857 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN-YK---------------------GEKPMGFALFSTAQLAVAAKD 105 (306)
Q Consensus 48 ~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~-~~---------------------~~kg~aFV~F~~~~~A~~Al~ 105 (306)
....|.|-+.|.+.+.. +-+.|++| |.|+. +. ....+-.|+|++..+|.+||+
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~ 80 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEF----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL 80 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGG----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhh----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH
Confidence 35678888997776654 55679999 98866 21 124778999999999999999
Q ss_pred HhcCceeCCCCCCeEEEEEcc
Q 021857 106 ALQEMIFDAETKSVLHTEMAK 126 (306)
Q Consensus 106 ~l~g~~~~~~~g~~i~V~~a~ 126 (306)
.||..|. |.-|-|....
T Consensus 81 -~NG~ii~---G~mIGV~Py~ 97 (132)
T 3p3d_A 81 -ENGAVFN---GVLLGVIPYT 97 (132)
T ss_dssp -TTTCEET---TEECEEEECC
T ss_pred -hCCeEeC---cEEEEEEECC
Confidence 8999997 7766666653
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.62 E-value=1.1 Score=42.25 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=44.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhc
Q 021857 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (306)
Q Consensus 49 ~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~ 108 (306)
...++|+ ++..+...+|.++|+.| |.+....-+...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f----g~v~V~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF----GNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG----CCCEEEECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc----CCEEEEEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 3577777 99999999999999999 6542222356789999999999999999885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=68.98 E-value=26 Score=24.40 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=46.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCC
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG 283 (306)
++.+-|-|+|..+-..++.-.-...|---.++.+. |.|+|.|.+-++...|++.|-+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHHh
Confidence 67788999999988888765555666555778875 6799999999999999987744
No 404
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=65.88 E-value=4.5 Score=26.60 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.1
Q ss_pred CcCcEEEeeCCcCeEEEEeCC
Q 021857 76 YEASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 76 ~~g~iv~~~~~kg~aFV~F~~ 96 (306)
++|.|++|...+|.++|.|.|
T Consensus 30 Y~gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 30 YLGTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETT
T ss_pred EEeEEEEEccCCcEEEEEEcc
Confidence 468889998889999999975
No 405
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=63.27 E-value=6 Score=26.68 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=18.0
Q ss_pred cCcEEEeeCCcCeEEEEeCC
Q 021857 77 EASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 77 ~g~iv~~~~~kg~aFV~F~~ 96 (306)
.|.|++|...++.+||.|.|
T Consensus 44 LGTI~kV~~~~e~ClV~F~D 63 (79)
T 2m0o_A 44 LGTIKKVDSAREVCLVQFED 63 (79)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred eEEEEEeccCCCEEEEEEcC
Confidence 48999999889999999976
No 406
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.07 E-value=5.9 Score=25.97 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=17.3
Q ss_pred cCcEEEeeCCcCeEEEEeCC
Q 021857 77 EASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 77 ~g~iv~~~~~kg~aFV~F~~ 96 (306)
.|.|++|...++.+||.|.|
T Consensus 27 lGtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred EeEEEEEecCCcEEEEEEcc
Confidence 47888888889999999975
No 407
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.07 E-value=4.4 Score=26.14 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=16.5
Q ss_pred cCcEEEeeCCcCeEEEEeCC
Q 021857 77 EASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 77 ~g~iv~~~~~kg~aFV~F~~ 96 (306)
.|.|++|...++.+||.|.|
T Consensus 25 lgtV~kV~~~~~~ClV~FeD 44 (63)
T 2e5q_A 25 LGKIKRVSSSKQSCLVTFED 44 (63)
T ss_dssp EEEECCCCSTTSEEEEEETT
T ss_pred EEEEEEEecCCCEEEEEEcc
Confidence 47777887788999999976
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=56.38 E-value=31 Score=22.75 Aligned_cols=67 Identities=9% Similarity=0.283 Sum_probs=41.6
Q ss_pred EEEEcCC-CCCCCHHHHHHhhccCCC-----ceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeCCCCceeE-Eee
Q 021857 225 TLFIGNL-GESINEEELRGLFSAQPG-----FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM-RIQ 297 (306)
Q Consensus 225 tLfV~NL-p~~~t~e~L~~~F~~~G~-----i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~~~~~~~i-~~k 297 (306)
+|||..= -..++.-+|...++.-+. |-.+++.. .|.||+-.. +.|..+++.|++..+.|. .++| .++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~-~~~~~~~~~l~~~~i~g~-~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILN-GKGPHVLKVMKNTTVKGK-QLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECT-TCHHHHHHHHTTCCC----CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECH-HHHHHHHHHhccccCcCc-eEEEEECC
Confidence 4666311 235777788777776554 44677764 478998765 458889999999999855 5777 543
No 409
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=53.99 E-value=10 Score=24.17 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=17.3
Q ss_pred cCcEEEeeCCcCeEEEEeCC
Q 021857 77 EASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 77 ~g~iv~~~~~kg~aFV~F~~ 96 (306)
.|.|+++...++.++|.|.|
T Consensus 21 lGtI~~V~~~~~~clV~F~D 40 (58)
T 4hcz_A 21 LGTIKKVDSAREVCLVQFED 40 (58)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred eEEEEEEecCCCEEEEEEcC
Confidence 47888988888999999976
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=52.55 E-value=56 Score=22.74 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=45.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHh
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDAL 107 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l 107 (306)
..++-+-|=|+|..+-..++.-..... |-..-+.--.|.|++.|.+-++-..|++.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhl----gyefycdyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHL----GYEFYCDYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTT----CCCEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhc----CeeEeeeeecCeeEEEecCChHHHHHHHHH
Confidence 357888899999999888888777776 554333333589999999999999999876
No 411
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=50.74 E-value=3.7 Score=31.82 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeC
Q 021857 64 RELQNLLRWLPGYEASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 64 e~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~ 95 (306)
+|+..+|... |.|.-+...||||||.-.
T Consensus 2 ~~~~~l~~~~----G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGA----GICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEE----EEEEEEETTTTEEEEEEE
T ss_pred Ccccccccce----eEEEEEECCCCeeEEeeC
Confidence 4455556655 887777788999999975
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.63 E-value=33 Score=27.14 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=36.0
Q ss_pred CEEEEcCCCC-C--------CCHHHHHHhh--ccCCCceEEEEEecCCc-ceEEEEECCHHHHHH
Q 021857 224 NTLFIGNLGE-S--------INEEELRGLF--SAQPGFKQMKVLRQERH-TVCFIEFEDVNSASS 276 (306)
Q Consensus 224 ~tLfV~NLp~-~--------~t~e~L~~~F--~~~G~i~~vkl~~~~~~-g~aFV~F~~~~~A~~ 276 (306)
.++.|-|++. . .+..+|++.| ..|..++..-+.....+ |+|.|+|.+--..-+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~ 77 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLH 77 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHH
Confidence 4578889886 2 3447899977 99988764444432222 899999998544433
No 413
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=34.68 E-value=28 Score=22.61 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=14.3
Q ss_pred CcEEEeeCCcCeEEEEeC
Q 021857 78 ASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~ 95 (306)
|.|..+...||||||.=.
T Consensus 3 G~Vk~fn~~kGfGFI~~~ 20 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKD 20 (66)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred EEEEEEECCCCEEEEecC
Confidence 666666778999999965
No 414
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=32.22 E-value=36 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=14.8
Q ss_pred CcEEEeeCCcCeEEEEeCC
Q 021857 78 ASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~~ 96 (306)
|.|..+...||||||+=.+
T Consensus 3 G~Vkwfn~~KGfGFI~~~d 21 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDD 21 (74)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 6666667789999999754
No 415
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=31.84 E-value=37 Score=22.68 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=14.5
Q ss_pred CcEEEeeCCcCeEEEEeCC
Q 021857 78 ASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~~ 96 (306)
|.|..+...||||||+=.+
T Consensus 5 G~Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 5 GTITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEEEETTTTEEEEEESS
T ss_pred eEEEEEECCCCeEEEecCC
Confidence 6666667789999998654
No 416
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=30.49 E-value=32 Score=22.82 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.0
Q ss_pred CcEEEeeCCcCeEEEEeC
Q 021857 78 ASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~ 95 (306)
|.|..+...||||||.=.
T Consensus 4 G~Vk~fn~~kGfGFI~~~ 21 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIERE 21 (73)
T ss_dssp EEEEEEETTTTEEEEECT
T ss_pred EEEEEEECCCCEEEEecC
Confidence 666666778999999864
No 417
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=30.39 E-value=1e+02 Score=19.38 Aligned_cols=60 Identities=18% Similarity=0.050 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCcee
Q 021857 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI 286 (306)
Q Consensus 223 ~~tLfV~NLp~~~t~e~L~~~F~~~G~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i 286 (306)
..+|.|.++.=.-....+...+.. ..|..+.+-. ..+-+.|+|++.++-..+|+. -|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~--~~~~~~v~~~~~~~i~~~i~~-~Gy~~ 65 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL--NEAVVAGNKEDVDKYIKAVEA-AGYQA 65 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS--SEEEEEEEGGGHHHHHHHHHH-TTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc--cCCEEEEEECCHHHHHHHHHH-cCCce
Confidence 356889999887788889988888 8888887754 225688888866666777775 36654
No 418
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=29.86 E-value=25 Score=19.05 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=14.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh
Q 021857 47 DEVRTIFITGLPDDVKERELQNLLRW 72 (306)
Q Consensus 47 ~~~~~LfV~nLp~~~tee~L~~~f~~ 72 (306)
...|+|||++-| ++|+.+-+.
T Consensus 3 gqvrtiwvggtp-----eelkklkee 23 (36)
T 2ki0_A 3 GQVRTIWVGGTP-----EELKKLKEE 23 (36)
T ss_dssp CSCCCCCBCCCH-----HHHHHHHHH
T ss_pred ceeEEEEecCCH-----HHHHHHHHH
Confidence 357899999864 566665443
No 419
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.12 E-value=35 Score=23.08 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=13.7
Q ss_pred CcEEEeeCCcCeEEEEeC
Q 021857 78 ASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~ 95 (306)
|.|..+...||||||+=.
T Consensus 11 G~Vkwfn~~kGfGFI~~~ 28 (79)
T 1h95_A 11 GTVKWFNVRNGYGFINRN 28 (79)
T ss_dssp EEEEEEETTTTEEEEEEG
T ss_pred eEEEEEECCCCcEEEecC
Confidence 556666778999999964
No 420
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.04 E-value=1.6e+02 Score=21.65 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=33.7
Q ss_pred HHHHHhhccCC-CceEEEEEecCCcceEEEEECCHHHHHHHHHHhCCceeC
Q 021857 238 EELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP 287 (306)
Q Consensus 238 e~L~~~F~~~G-~i~~vkl~~~~~~g~aFV~F~~~~~A~~Ai~~lnG~~i~ 287 (306)
.++.+.+...| +|..+.......+....|.+++.+.|.+++.. +|+.+.
T Consensus 87 a~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v~ 136 (144)
T 2f06_A 87 AKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDLL 136 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEEe
Confidence 55666666666 46554444223346777899999999999887 788875
No 421
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=27.28 E-value=49 Score=21.35 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.0
Q ss_pred CcEEEeeCCcCeEEEEeC
Q 021857 78 ASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~ 95 (306)
|.|..+...||||||.=.
T Consensus 4 G~Vk~fn~~kGfGFI~~~ 21 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEEEEEECCCCeEEEecC
Confidence 666666778999999864
No 422
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=27.14 E-value=44 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=11.7
Q ss_pred EEEEEecCCcceEEEEE
Q 021857 252 QMKVLRQERHTVCFIEF 268 (306)
Q Consensus 252 ~vkl~~~~~~g~aFV~F 268 (306)
.||++ +..+||+||+-
T Consensus 12 ~VKWF-n~~KGfGFI~~ 27 (90)
T 3ulj_A 12 HCKWF-NVRMGFGFISM 27 (90)
T ss_dssp EEEEE-ETTTTEEEEEE
T ss_pred EEEEe-eCCCCeEEeEe
Confidence 37787 45669999963
No 423
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=26.06 E-value=53 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=13.9
Q ss_pred CcEEEeeCCcCeEEEEeC
Q 021857 78 ASQVNYKGEKPMGFALFS 95 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~ 95 (306)
|.|..+...||||||+=.
T Consensus 4 G~Vk~fn~~kGfGFI~~~ 21 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPD 21 (67)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred EEEEEEECCCCeEEEecC
Confidence 666666778999999964
No 424
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=25.50 E-value=55 Score=16.71 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=12.1
Q ss_pred CCHHHHHHHHhhcCC
Q 021857 61 VKERELQNLLRWLPG 75 (306)
Q Consensus 61 ~tee~L~~~f~~~~~ 75 (306)
-.|.+|++++++|.|
T Consensus 13 rnekelrdfiekfkg 27 (28)
T 1fme_A 13 RNEKELRDFIEKFKG 27 (28)
T ss_dssp CCHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHhcC
Confidence 368899999999854
No 425
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=24.51 E-value=52 Score=25.27 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=15.5
Q ss_pred cCcEEEeeCCcCeEEEEeCC
Q 021857 77 EASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 77 ~g~iv~~~~~kg~aFV~F~~ 96 (306)
.|.|..+...||||||.-.+
T Consensus 64 ~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 64 KGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEeCCCCeEEeccCC
Confidence 36666677789999999854
No 426
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=23.92 E-value=61 Score=21.28 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=14.8
Q ss_pred CcEEEeeCCcCeEEEEeCC
Q 021857 78 ASQVNYKGEKPMGFALFST 96 (306)
Q Consensus 78 g~iv~~~~~kg~aFV~F~~ 96 (306)
|.|..+...||||||.=.+
T Consensus 8 G~Vk~fn~~kGfGFI~~~~ 26 (71)
T 3i2z_B 8 GNVKWFNESKGFGFITPED 26 (71)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCcEEEecCC
Confidence 6676677789999998643
No 427
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=22.91 E-value=1.3e+02 Score=22.17 Aligned_cols=37 Identities=3% Similarity=0.001 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCcceEEEE-ECCHHHHH---HHHHHhCCc
Q 021857 248 PGFKQMKVLRQERHTVCFIE-FEDVNSAS---SVHHNLQGA 284 (306)
Q Consensus 248 G~i~~vkl~~~~~~g~aFV~-F~~~~~A~---~Ai~~lnG~ 284 (306)
=.|..|++-.+-+....||. |-+.++.. .|++...|+
T Consensus 44 vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~a~g~ 84 (129)
T 2e7g_A 44 VELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAH 84 (129)
T ss_dssp CCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHHHTHHH
T ss_pred eEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHHHhHHH
Confidence 35889999876665666777 55544433 444444443
No 428
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.85 E-value=1.9e+02 Score=19.50 Aligned_cols=45 Identities=24% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCHHHHHHHHhhcCCCcCcEEEeeCCcCeEEEEeCCHHHHHHHHHHhcCceeC
Q 021857 61 VKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (306)
Q Consensus 61 ~tee~L~~~f~~~~~~~g~iv~~~~~kg~aFV~F~~~~~A~~Al~~l~g~~~~ 113 (306)
-|||+|+..++.|...-..| + .++..++-++-.+|.+..+...++
T Consensus 33 ktedelkkyleefrkesqni-k-------vlilvsndeeldkakelaqkmeid 77 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNI-K-------VLILVSNDEELDKAKELAQKMEID 77 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSE-E-------EEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHhhccCe-E-------EEEEEcChHHHHHHHHHHHhhcee
Confidence 58999999999984332333 2 246677888888888876666665
No 429
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.43 E-value=62 Score=18.43 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHhhc
Q 021857 59 DDVKERELQNLLRWL 73 (306)
Q Consensus 59 ~~~tee~L~~~f~~~ 73 (306)
.++|.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999876
No 430
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=20.01 E-value=58 Score=23.07 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=18.3
Q ss_pred CCHHHHHHhhccCCCceEEEEE
Q 021857 235 INEEELRGLFSAQPGFKQMKVL 256 (306)
Q Consensus 235 ~t~e~L~~~F~~~G~i~~vkl~ 256 (306)
.+++.|++.|+..|.|..-+++
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4678899999999999877766
Done!