Query 021858
Match_columns 306
No_of_seqs 180 out of 1922
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 10:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2E-58 6.9E-63 398.4 24.0 283 15-301 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.7E-57 5.8E-62 391.8 27.6 285 9-299 3-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.9E-36 6.5E-41 260.4 19.7 188 115-302 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3.5E-36 1.2E-40 259.4 18.2 182 120-302 4-195 (303)
5 3tgu_G UQCRQ, mitochondrial ub 35.9 21 0.00072 23.2 2.1 35 266-300 33-67 (81)
6 3f2e_A SIRV coat protein; four 27.5 26 0.00088 22.3 1.4 33 249-281 6-42 (100)
7 1pp9_G Ubiquinol-cytochrome C 26.0 43 0.0015 21.7 2.3 34 266-299 33-66 (81)
8 3fbl_A Putative uncharacterize 19.4 1.1E+02 0.0036 18.5 2.9 29 163-191 5-37 (82)
9 3tgu_G UQCRQ, mitochondrial ub 16.5 2E+02 0.0068 18.5 3.9 40 173-212 32-71 (81)
10 2acm_A Mucin-1; auto-catalytic 16.1 24 0.00082 21.2 -0.5 20 59-78 40-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2e-58 Score=398.41 Aligned_cols=283 Identities=49% Similarity=0.825 Sum_probs=251.7
Q ss_pred HHHHHhhHHHHHHHHhhccHHHHHHHHHhccccccC-CCcCCCCCCChHHHHHHHHHhhchhhhccchhhhHHHHhhccc
Q 021858 15 GTFASSAFAACFAEICTIPLDTAKVRLQLQKKAVAG-DGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGG 93 (306)
Q Consensus 15 ~~~~~g~~a~~~~~~~~~Pl~~ik~~~Q~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 93 (306)
..+++|++|++++.++++|+|+||+|+|++...... ......++++.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 468999999999999999999999999998642100 0011246889999999999999999999999999999999999
Q ss_pred chhcccHHHHHhhccCCCCCCcchHHHHHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhh
Q 021858 94 LRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQE 173 (306)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~ 173 (306)
++|.+||.+++.+.+... ..+....+++|++||+++.++++|+|++|+|+|++... .....|++.++++++|+++|
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhc
Confidence 999999999998865422 35678899999999999999999999999999998542 23357899999999999999
Q ss_pred hHhHhhccchHHHHHHHHHHhhHHhhHHHHHHHHhcCCCCCChHHHHHHHHhhhhhhhhhhcCcHHHHHHHHhcC--CCC
Q 021858 174 GFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRMMGD--SAY 251 (306)
Q Consensus 174 G~~glyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pld~i~~r~q~~--~~~ 251 (306)
|++|||||+.+++++.++..+++|.+||.+++.+.+....+.+....+++|++||++++++++|+|+||+|||.+ ..|
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y 238 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY 238 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999998876544456677899999999999999999999999999997 459
Q ss_pred CCHHHHHHHHHHhhcccccccChhHHHhhhhhhHHHHHHHHHHHHHHHhh
Q 021858 252 KSTLDCFIKTLKNDGPLAFYKGFLPNFGRLGSWNVIMFLTLEQAKKFVRS 301 (306)
Q Consensus 252 ~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 301 (306)
+++++|+++++++||++|||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 239 ~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986543
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.7e-57 Score=391.82 Aligned_cols=285 Identities=26% Similarity=0.422 Sum_probs=244.1
Q ss_pred cccchHHHHHHhhHHHHHHHHhhccHHHHHHHHHhccccccCCCcCCCCCCChHHHHHHHHHhhchhhhccchhhhHHHH
Q 021858 9 SDISLAGTFASSAFAACFAEICTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQ 88 (306)
Q Consensus 9 ~~~~~~~~~~~g~~a~~~~~~~~~Pl~~ik~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~ 88 (306)
+..+.+..+++|++|++++.++++|+|+||+|+|++..... ......+++.++++++++++||++|||||+.+++++.
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 80 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ--ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRY 80 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS--CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc--cccccccccHHHHHHHHHhccchhheecccHHHHHHH
Confidence 34567889999999999999999999999999999864321 1123468899999999999999999999999999999
Q ss_pred hhcccchhcccHHHHHhh-ccCCCCCC--cchHHHHHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 021858 89 CLFGGLRIGLYEPVKTLY-VGKDFVGD--VPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNA 165 (306)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~ 165 (306)
++..+++|.+||.+++.+ ...+.... .+....+++|++||+++.++++|+|++|+|+|++... .+....|++.+++
T Consensus 81 ~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~ 159 (297)
T 1okc_A 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK-GAAQREFTGLGNC 159 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-STTTCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC-CCcCcCCCCHHHH
Confidence 999999999999999954 32221112 2346788999999999999999999999999998532 1223578999999
Q ss_pred HHHHHHhhhHhHhhccchHHHHHHHHHHhhHHhhHHHHHHHHhcCCCCCChHHHHHHHHhhhhhhhhhhcCcHHHHHHHH
Q 021858 166 YSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRM 245 (306)
Q Consensus 166 ~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pld~i~~r~ 245 (306)
+++++++||++|||||+.+++++.++..+++|.+||.+++.+.+. .+.+....+++|++||++++++++|+|+||+||
T Consensus 160 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~ 237 (297)
T 1okc_A 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237 (297)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999999999999999999999999999999976543 234567789999999999999999999999999
Q ss_pred hcCC-------CCCCHHHHHHHHHHhhcccccccChhHHHhhhhhhHHHHHHHHHHHHHHH
Q 021858 246 MGDS-------AYKSTLDCFIKTLKNDGPLAFYKGFLPNFGRLGSWNVIMFLTLEQAKKFV 299 (306)
Q Consensus 246 q~~~-------~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~ 299 (306)
|.+. .|+++++|+++++++||++|||||+.++++|. +.++++|.+||.+|+++
T Consensus 238 q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9863 58999999999999999999999999999996 57899999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.9e-36 Score=260.44 Aligned_cols=188 Identities=26% Similarity=0.394 Sum_probs=164.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhChHHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHHHHhhhHhHhhccchHHHHHHHHHH
Q 021858 115 VPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLP-PGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIIN 193 (306)
Q Consensus 115 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~ 193 (306)
.+....+++|++||+++.++++|+|++|+|+|++.... ......|++.++++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45678899999999999999999999999999985321 11234789999999999999999999999999999999999
Q ss_pred hhHHhhHHHHHHHHhcC-CCCCC---hHHHHHHHHhhhhhhhhhhcCcHHHHHHHHhcC-------CCCCCHHHHHHHHH
Q 021858 194 AAELASYDQVKQTILKI-PGFTD---NVVTHLLSGLGAGFVAVCIGSPVDVVKSRMMGD-------SAYKSTLDCFIKTL 262 (306)
Q Consensus 194 ~~~~~~y~~~~~~~~~~-~~~~~---~~~~~~~~~~~ag~~~~~~~~Pld~i~~r~q~~-------~~~~~~~~~~~~i~ 262 (306)
+++|.+||.+++.+... ...+. .....+++|++||+++.++++|+|+||+|+|++ ..|.++++|+++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999964332 22222 346789999999999999999999999999986 25889999999999
Q ss_pred HhhcccccccChhHHHhhhhhhHHHHHHHHHHHHHHHhhh
Q 021858 263 KNDGPLAFYKGFLPNFGRLGSWNVIMFLTLEQAKKFVRSI 302 (306)
Q Consensus 263 ~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 302 (306)
++||++|||||+.++++|.+|..++.|.+||.+|+.+.+.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999976543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.5e-36 Score=259.39 Aligned_cols=182 Identities=29% Similarity=0.437 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHhcCCCCC----CCCCCCCCHHHHHHHHHHhhhHhHhhccchHHHHHHHHHHhh
Q 021858 120 KILAGLTTGALGIMIANPTDLVKVRLQAEGKLPP----GVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAA 195 (306)
Q Consensus 120 ~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~ 195 (306)
.+++|++||+++.++++|+|++|+|+|++..... .....|++.++++++++++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999854211 123478999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhcCCCCCChHHHHHHHHhhhhhhhhhhcCcHHHHHHHHhcCC------CCCCHHHHHHHHHHhhcccc
Q 021858 196 ELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRMMGDS------AYKSTLDCFIKTLKNDGPLA 269 (306)
Q Consensus 196 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pld~i~~r~q~~~------~~~~~~~~~~~i~~~~G~~~ 269 (306)
+|.+||.+++.+.+... ..+....+++|++||+++.++++|+|+||+|+|++. .|++.++++++|+++||+++
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 99999999999876422 356788999999999999999999999999999974 58999999999999999999
Q ss_pred cccChhHHHhhhhhhHHHHHHHHHHHHHHHhhh
Q 021858 270 FYKGFLPNFGRLGSWNVIMFLTLEQAKKFVRSI 302 (306)
Q Consensus 270 ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 302 (306)
||||+.+++++.++..++.|.+||.+|+.+.+.
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999977654
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=35.92 E-value=21 Score=23.20 Aligned_cols=35 Identities=6% Similarity=0.005 Sum_probs=25.6
Q ss_pred cccccccChhHHHhhhhhhHHHHHHHHHHHHHHHh
Q 021858 266 GPLAFYKGFLPNFGRLGSWNVIMFLTLEQAKKFVR 300 (306)
Q Consensus 266 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~ 300 (306)
|+-..+|-+...++..+|..++...+|+..++-.+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 33444455567788899999999999988887443
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=27.49 E-value=26 Score=22.27 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHhhcc----cccccChhHHHhhh
Q 021858 249 SAYKSTLDCFIKTLKNDGP----LAFYKGFLPNFGRL 281 (306)
Q Consensus 249 ~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~~ 281 (306)
+++.++-+-+..++.+-|+ +++|.|++..+.|.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 4555555666667777776 45888988887764
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=26.03 E-value=43 Score=21.70 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=26.5
Q ss_pred cccccccChhHHHhhhhhhHHHHHHHHHHHHHHH
Q 021858 266 GPLAFYKGFLPNFGRLGSWNVIMFLTLEQAKKFV 299 (306)
Q Consensus 266 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~ 299 (306)
|+...+|-+...++..+|..++...+|+..++..
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 4555666677778888999999999998888744
No 8
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=19.36 E-value=1.1e+02 Score=18.49 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhH----hHhhccchHHHHHHHH
Q 021858 163 LNAYSTIVKQEGF----AALWTGVGPNVARNAI 191 (306)
Q Consensus 163 ~~~~~~i~~~~G~----~glyrG~~~~~~~~~~ 191 (306)
.-++++|.+++|+ .|+|-.++-.+++..+
T Consensus 5 rlaikeicktdgipnikwgmyiafgekllksyl 37 (82)
T 3fbl_A 5 RLAIKEICKTDGIPNIKWGMYIAFGEKLLKSYL 37 (82)
T ss_dssp HHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCcchhHHHHHHHHHHHHHHH
Confidence 3467888889886 4666666666665443
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=16.53 E-value=2e+02 Score=18.53 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=28.8
Q ss_pred hhHhHhhccchHHHHHHHHHHhhHHhhHHHHHHHHhcCCC
Q 021858 173 EGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPG 212 (306)
Q Consensus 173 ~G~~glyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 212 (306)
.|+-..+|-+...++..+|..++.+.+|+..++.-.....
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455556677888899999999999999877655433
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=16.11 E-value=24 Score=21.19 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHhhchhhhc
Q 021858 59 KGMLGTVATIAREEGMVSLW 78 (306)
Q Consensus 59 ~~~~~~~~~i~~~~G~~~ly 78 (306)
++..+.+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35677888899999988875
Done!