CGA1 protein (Arabidopsis thaliana)

STRING 9.05

CGA1 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




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Your Input:
	CGA1	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor; CYTOKININ-RESPONSIVE GATA FACTOR 1 (CGA1); FUNCTIONS IN- transcription factor activity; INVOLVED IN- response to cytokinin stimulus; LOCATED IN- nucleus; EXPRESSED IN- 12 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, NHR/GATA-type (InterPro-IPR013088), Zinc finger, GATA-type (InterPro-IPR000679); BEST Arabidopsis thaliana protein match is- GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor (TAIR-AT5G56860.1); Has 1008 Blast hits to 988 proteins i [...] (352 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G53903	unknown protein; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF581 (InterPro-IPR00 [...] (126 aa)	•	0.679
	AT1G53885	senescence-associated protein-related; senescence-associated protein-related; FUNCTIONS IN- mol [...] (126 aa)	•	0.679
	AT5G14280	DNA-binding storekeeper protein-related; DNA-binding storekeeper protein-related; FUNCTIONS IN- [...] (572 aa)	•	0.675
	AT4G00270	DNA-binding storekeeper protein-related; DNA-binding storekeeper protein-related; FUNCTIONS IN- [...] (302 aa)	•	0.657
	AT2G36340	DNA-binding storekeeper protein-related; DNA-binding storekeeper protein-related; FUNCTIONS IN- [...] (414 aa)	•	0.599
	AT1G76350	RWP-RK domain-containing protein; RWP-RK domain-containing protein; FUNCTIONS IN- transcription [...] (808 aa)	•	0.599
	AT2G25650	DNA-binding storekeeper protein-related; DNA-binding storekeeper protein-related; FUNCTIONS IN- [...] (386 aa)	•	0.591
	AT4G38340	RWP-RK domain-containing protein; RWP-RK domain-containing protein; FUNCTIONS IN- transcription [...] (767 aa)	•	0.575
	AT4G35270	RWP-RK domain-containing protein; RWP-RK domain-containing protein; FUNCTIONS IN- transcription [...] (974 aa)	•	0.565
	AT1G68360	zinc finger protein-related; zinc finger protein-related; FUNCTIONS IN- transcription factor ac [...] (244 aa)	•	0.539

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Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

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