Query 021859
Match_columns 306
No_of_seqs 170 out of 754
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 1.4E-16 4.7E-21 120.2 5.9 40 163-203 2-41 (63)
2 4gat_A Nitrogen regulatory pro 99.6 3.2E-16 1.1E-20 119.0 4.6 46 165-221 6-51 (66)
3 1gnf_A Transcription factor GA 99.6 8.7E-16 3E-20 109.4 5.0 35 167-202 3-37 (46)
4 2vut_I AREA, nitrogen regulato 99.6 8.3E-16 2.8E-20 108.1 3.5 35 168-203 1-35 (43)
5 2kae_A GATA-type transcription 99.5 4.8E-15 1.6E-19 114.1 2.0 41 164-204 4-44 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 1.8E-13 6E-18 113.0 6.9 48 164-222 55-102 (115)
7 4hc9_A Trans-acting T-cell-spe 99.3 1.8E-12 6.2E-17 107.0 4.2 43 166-219 3-45 (115)
8 3cw2_K Translation initiation 66.7 2.4 8.3E-05 35.8 1.9 32 167-199 102-133 (139)
9 1dl6_A Transcription factor II 65.4 3 0.0001 30.1 2.0 34 165-201 8-41 (58)
10 2d74_B Translation initiation 63.8 2.5 8.5E-05 36.2 1.4 29 169-198 105-133 (148)
11 1nee_A EIF-2-beta, probable tr 57.3 2.5 8.7E-05 35.7 0.4 29 169-198 103-131 (138)
12 1k81_A EIF-2-beta, probable tr 55.4 1.1 3.9E-05 29.7 -1.6 28 170-198 2-29 (36)
13 3k7a_M Transcription initiatio 53.4 5.1 0.00017 37.3 1.8 33 167-200 20-52 (345)
14 3dwd_A ADP-ribosylation factor 52.4 9.1 0.00031 32.8 3.0 33 168-202 38-70 (147)
15 2iqj_A Stromal membrane-associ 51.3 7.8 0.00027 32.4 2.4 35 167-203 26-60 (134)
16 2crr_A Stromal membrane-associ 50.8 9.4 0.00032 32.1 2.8 34 168-203 29-62 (141)
17 2b0o_E UPLC1; arfgap, structur 49.0 11 0.00036 33.4 3.0 34 168-203 42-75 (301)
18 2owa_A Arfgap-like finger doma 48.8 8.1 0.00028 32.5 2.1 32 168-201 36-67 (138)
19 2crw_A ARF GAP 3, ADP-ribosyla 46.8 13 0.00045 31.7 3.2 33 168-202 29-61 (149)
20 3cng_A Nudix hydrolase; struct 45.9 5.6 0.00019 32.8 0.7 32 167-198 2-33 (189)
21 2p57_A GTPase-activating prote 43.3 9.9 0.00034 32.4 1.8 33 168-202 37-69 (144)
22 1pft_A TFIIB, PFTFIIBN; N-term 40.5 5.3 0.00018 27.3 -0.2 30 168-200 5-34 (50)
23 2g2k_A EIF-5, eukaryotic trans 39.1 4.4 0.00015 35.5 -1.0 30 169-199 97-128 (170)
24 2olm_A Nucleoporin-like protei 35.9 15 0.0005 30.9 1.7 33 168-202 25-57 (140)
25 2e9h_A EIF-5, eukaryotic trans 34.5 6.4 0.00022 34.0 -0.7 31 169-199 104-135 (157)
26 3sub_A ADP-ribosylation factor 33.8 20 0.00067 31.3 2.2 34 168-203 22-55 (163)
27 3o47_A ADP-ribosylation factor 33.4 20 0.00069 32.4 2.4 34 168-203 37-70 (329)
28 3k1f_M Transcription initiatio 27.1 15 0.0005 33.0 0.3 36 165-201 18-53 (197)
29 4bbr_M Transcription initiatio 27.1 10 0.00035 35.5 -0.7 33 167-200 20-52 (345)
30 3lju_X ARF-GAP with dual PH do 25.2 31 0.0011 32.5 2.2 33 168-202 34-66 (386)
31 3jue_A Arfgap with coiled-coil 24.8 43 0.0015 31.0 3.0 35 167-203 44-78 (368)
32 2yrk_A Zinc finger homeobox pr 24.6 10 0.00034 28.0 -1.0 18 184-201 7-24 (55)
33 1pqv_S STP-alpha, transcriptio 23.6 14 0.00047 34.4 -0.6 34 168-201 268-307 (309)
34 1dcq_A PYK2-associated protein 22.7 50 0.0017 28.6 2.8 34 168-203 17-50 (278)
35 2qiy_C Ubiquitin carboxyl-term 21.6 23 0.00077 25.5 0.3 12 33-44 16-28 (48)
36 1qyp_A RNA polymerase II; tran 20.1 20 0.00068 25.1 -0.2 33 168-200 15-53 (57)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.65 E-value=1.4e-16 Score=120.18 Aligned_cols=40 Identities=38% Similarity=0.809 Sum_probs=35.8
Q ss_pred CCCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 163 NNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 163 ~s~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
++......|++|++++||+||+||+|+ +|||||||+|++.
T Consensus 2 ~~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~ 41 (63)
T 3dfx_A 2 AARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLH 41 (63)
T ss_dssp CCCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHH
T ss_pred CCCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHc
Confidence 346678999999999999999999996 9999999999844
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.61 E-value=3.2e-16 Score=118.98 Aligned_cols=46 Identities=41% Similarity=0.878 Sum_probs=39.3
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhhhHHHHHHhcCccccccc
Q 021859 165 TNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAA 221 (306)
Q Consensus 165 ~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~k~~~~~~~~G~~~~~a~ 221 (306)
.+..+.|++|++++||+||+||.|. +|||||||||++ +|..+|...
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~----------~~~~RP~~~ 51 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL----------HGVVRPLSL 51 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHH----------HCSCCCGGG
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHH----------cCCCCchhh
Confidence 4678999999999999999999995 999999999983 556666544
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.59 E-value=8.7e-16 Score=109.43 Aligned_cols=35 Identities=46% Similarity=1.037 Sum_probs=32.5
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 021859 167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202 (306)
Q Consensus 167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK 202 (306)
..+.|++|++++||+||+||.|+ +|||||||||++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~ 37 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKM 37 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHH
Confidence 46899999999999999999995 999999999983
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.57 E-value=8.3e-16 Score=108.10 Aligned_cols=35 Identities=46% Similarity=1.029 Sum_probs=31.7
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
++.|++|++++||+||+||+|+ +|||||||+|++.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~ 35 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLH 35 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHHHHHh
Confidence 3689999999999999999996 9999999999844
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.49 E-value=4.8e-15 Score=114.09 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=31.7
Q ss_pred CCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhh
Q 021859 164 NTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 204 (306)
Q Consensus 164 s~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~ 204 (306)
+....+.|+||+|++||+||+|+.+..+|||||||||++..
T Consensus 4 ~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~ 44 (71)
T 2kae_A 4 MNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN 44 (71)
T ss_dssp ----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH
T ss_pred CCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC
Confidence 35567999999999999999954443499999999998654
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.42 E-value=1.8e-13 Score=113.04 Aligned_cols=48 Identities=33% Similarity=0.717 Sum_probs=40.1
Q ss_pred CCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhhhHHHHHHhcCcccccccc
Q 021859 164 NTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAAD 222 (306)
Q Consensus 164 s~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~k~~~~~~~~G~~~~~a~~ 222 (306)
.......|+||+++.||+||+||+| ++|||||||||+ .+|..++....
T Consensus 55 ~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~----------~~~~~rp~~~~ 102 (115)
T 4hc9_A 55 ARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK----------LHNINRPLTMK 102 (115)
T ss_dssp CCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH----------HHSSCCCGGGC
T ss_pred cccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHH----------HhCCCCCcccc
Confidence 3456799999999999999999999 899999999998 45555555443
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.28 E-value=1.8e-12 Score=107.01 Aligned_cols=43 Identities=44% Similarity=0.930 Sum_probs=36.0
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhhhHHHHHHhcCccccc
Q 021859 166 NTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQL 219 (306)
Q Consensus 166 ~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~k~~~~~~~~G~~~~~ 219 (306)
...+.|+||++++||+||+|+.| .+|||||||||+ ++|...+.
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K----------l~G~nRP~ 45 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK----------MNGQNRPL 45 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH----------HHSSCCCC
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh----------hccccccc
Confidence 45799999999999999999999 899999999997 56666665
No 8
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=66.67 E-value=2.4 Score=35.83 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=22.6
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHH
Q 021859 167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIR 199 (306)
Q Consensus 167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~ 199 (306)
.--.|..|+.+.|-+-+.+..- -.-|+|||-.
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred HeeECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 3468999999999999876433 5689999964
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=65.44 E-value=3 Score=30.08 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=24.2
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHH
Q 021859 165 TNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 201 (306)
Q Consensus 165 ~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~r 201 (306)
......|.+|+.+. +-.....| ...|..||+-+.
T Consensus 8 ll~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~ 41 (58)
T 1dl6_A 8 ALPRVTCPNHPDAI--LVEDYRAG-DMICPECGLVVG 41 (58)
T ss_dssp CCSCCSBTTBSSSC--CEECSSSC-CEECTTTCCEEC
T ss_pred ccccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEe
Confidence 34456899998755 54555667 799999998663
No 10
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=63.81 E-value=2.5 Score=36.20 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=23.7
Q ss_pred cccccCCCCCCCcccCCCCCCcccchHHHH
Q 021859 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGI 198 (306)
Q Consensus 169 r~CsnC~tt~TP~WRrGP~G~~~LCNACGL 198 (306)
-.|..|+.+.|-+-+.+..- -.-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCC
Confidence 57999999999999876433 568999984
No 11
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=57.31 E-value=2.5 Score=35.66 Aligned_cols=29 Identities=34% Similarity=0.772 Sum_probs=23.4
Q ss_pred cccccCCCCCCCcccCCCCCCcccchHHHH
Q 021859 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGI 198 (306)
Q Consensus 169 r~CsnC~tt~TP~WRrGP~G~~~LCNACGL 198 (306)
-.|..|+.+.|-+-+.+..- -.-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 57999999999999865433 568999984
No 12
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=55.44 E-value=1.1 Score=29.72 Aligned_cols=28 Identities=29% Similarity=0.716 Sum_probs=21.3
Q ss_pred ccccCCCCCCCcccCCCCCCcccchHHHH
Q 021859 170 VCADCNTTKTPLWRSGPRGPKSLCNACGI 198 (306)
Q Consensus 170 ~CsnC~tt~TP~WRrGP~G~~~LCNACGL 198 (306)
.|..|+...|-+=+++..- -.-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 5999999999988864322 346999984
No 13
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=53.39 E-value=5.1 Score=37.30 Aligned_cols=33 Identities=18% Similarity=0.559 Sum_probs=22.6
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHH
Q 021859 167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQ 200 (306)
Q Consensus 167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~ 200 (306)
....|.+|+.+.+-.-.+-..| ..+|..||+-+
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCC-CEecCCCCeEc
Confidence 3567999988743233344567 78999999855
No 14
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=52.45 E-value=9.1 Score=32.81 Aligned_cols=33 Identities=33% Similarity=0.694 Sum_probs=28.9
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK 202 (306)
.+.|++|++.. |.|-.-..| -.+|-.|.-..|.
T Consensus 38 N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~ 70 (147)
T 3dwd_A 38 NNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRG 70 (147)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhc
Confidence 57999999875 999999999 8999999988774
No 15
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=51.32 E-value=7.8 Score=32.36 Aligned_cols=35 Identities=31% Similarity=0.655 Sum_probs=29.8
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
..+.|++|++.. |.|-.-..| -.+|-.|.-..|..
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~l 60 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNL 60 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcC
Confidence 358999999875 999999999 89999998888743
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.75 E-value=9.4 Score=32.11 Aligned_cols=34 Identities=32% Similarity=0.656 Sum_probs=29.0
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
.+.|++|++. -|.|-.-..| -.+|-.|.-..|..
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNL 62 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHH
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcC
Confidence 4799999986 5899999999 89999998877743
No 17
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=48.98 E-value=11 Score=33.43 Aligned_cols=34 Identities=29% Similarity=0.622 Sum_probs=28.6
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
.+.|.+|++.. |.|-.-.-| ..+|-.|--..|..
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~l 75 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHREL 75 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhh
Confidence 58999999965 999999999 89999997666553
No 18
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=48.77 E-value=8.1 Score=32.54 Aligned_cols=32 Identities=31% Similarity=0.691 Sum_probs=28.5
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHH
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 201 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~r 201 (306)
.+.|.+|++.. |.|-.-..| -.+|-.|.-..|
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR 67 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHR 67 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHH
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHh
Confidence 58999999875 999999999 899999988887
No 19
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.82 E-value=13 Score=31.67 Aligned_cols=33 Identities=36% Similarity=0.738 Sum_probs=28.7
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK 202 (306)
.+.|.+|++. -|.|-.-..| -.+|-.|.-..|.
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (149)
T 2crw_A 29 NKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRS 61 (149)
T ss_dssp TSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHH
T ss_pred CCcCCCCcCC-CCCcEEeccC-EEEchhcchhhcc
Confidence 5899999975 6899999999 8999999888873
No 20
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=45.88 E-value=5.6 Score=32.78 Aligned_cols=32 Identities=19% Similarity=0.543 Sum_probs=26.8
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHH
Q 021859 167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGI 198 (306)
Q Consensus 167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL 198 (306)
..+.|..||+..+.....|..+....|-.||.
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCC
Confidence 35799999999988887888877789999993
No 21
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=43.26 E-value=9.9 Score=32.39 Aligned_cols=33 Identities=33% Similarity=0.687 Sum_probs=28.6
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK 202 (306)
.+.|.+|++. -|.|-.-..| -.+|-.|.-..|.
T Consensus 37 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 69 (144)
T 2p57_A 37 NKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRS 69 (144)
T ss_dssp GGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcC
Confidence 5899999986 4999999999 8899999888873
No 22
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=40.47 E-value=5.3 Score=27.27 Aligned_cols=30 Identities=30% Similarity=0.726 Sum_probs=19.6
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHH
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQ 200 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~ 200 (306)
...|.+|+.+ ++-.....| ...|..||+-|
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 3568888763 343333445 68888888865
No 23
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=39.11 E-value=4.4 Score=35.48 Aligned_cols=30 Identities=30% Similarity=0.677 Sum_probs=23.1
Q ss_pred cccccCCCCCCCcccC--CCCCCcccchHHHHH
Q 021859 169 RVCADCNTTKTPLWRS--GPRGPKSLCNACGIR 199 (306)
Q Consensus 169 r~CsnC~tt~TP~WRr--GP~G~~~LCNACGL~ 199 (306)
-.|..|+...|-+-+. +..- -.-|+|||-.
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~-~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTI-GNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEE-EEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccccCCc
Confidence 5799999999999883 3222 3579999965
No 24
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=35.94 E-value=15 Score=30.90 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=28.5
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK 202 (306)
.+.|++|++. -|.|-.-..| -.+|-.|.-..|.
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 5899999986 6999999999 8999999887763
No 25
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.51 E-value=6.4 Score=34.00 Aligned_cols=31 Identities=29% Similarity=0.686 Sum_probs=22.5
Q ss_pred cccccCCCCCCCcccCCCCC-CcccchHHHHH
Q 021859 169 RVCADCNTTKTPLWRSGPRG-PKSLCNACGIR 199 (306)
Q Consensus 169 r~CsnC~tt~TP~WRrGP~G-~~~LCNACGL~ 199 (306)
-.|..|+...|-+-+....+ --.-|+|||-.
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 67999999999998722122 24579999953
No 26
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=33.83 E-value=20 Score=31.29 Aligned_cols=34 Identities=32% Similarity=0.605 Sum_probs=29.0
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
.+.|++|++. -|.|-.-..| -.+|-.|.-..|..
T Consensus 22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~L 55 (163)
T 3sub_A 22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSL 55 (163)
T ss_dssp GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHT
T ss_pred CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCC
Confidence 4799999996 6999999999 89999998777653
No 27
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=33.36 E-value=20 Score=32.39 Aligned_cols=34 Identities=32% Similarity=0.659 Sum_probs=28.9
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
.+.|++|++. -|.|-.-.-| -.+|-.|.--.|..
T Consensus 37 n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 37 NNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGL 70 (329)
T ss_dssp TTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhccc
Confidence 4789999985 6799999989 89999998777764
No 28
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=27.15 E-value=15 Score=33.03 Aligned_cols=36 Identities=19% Similarity=0.534 Sum_probs=25.4
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHH
Q 021859 165 TNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 201 (306)
Q Consensus 165 ~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~r 201 (306)
......|..|+...+-+--+-..| .++|..||+-+.
T Consensus 18 ln~~~~CPECGs~~t~IV~D~erG-E~VCsdCGLVLE 53 (197)
T 3k1f_M 18 LNIVLTCPECKVYPPKIVERFSEG-DVVCALCGLVLS 53 (197)
T ss_dssp CCCCCCCTTTCCSSCCEEEEGGGT-EEEETTTCBBCC
T ss_pred cccCeECcCCCCcCCeEEEeCCCC-EEEEcCCCCCcC
Confidence 344568999998654444344556 899999999653
No 29
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=27.07 E-value=10 Score=35.52 Aligned_cols=33 Identities=18% Similarity=0.559 Sum_probs=21.6
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHH
Q 021859 167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQ 200 (306)
Q Consensus 167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~ 200 (306)
....|.+|+...+-+--+-..| .++|..||+-+
T Consensus 20 ~~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlVl 52 (345)
T 4bbr_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp --CCCSSCCCSSCCEEEEGGGT-EEEETTTCBEE
T ss_pred cCCcCCCCCCCCCceeEECCCC-cEEeCCCCCCc
Confidence 3457999997444344444567 78999999854
No 30
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=25.20 E-value=31 Score=32.50 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=28.4
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK 202 (306)
.+.|++|++. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 34 N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr~ 66 (386)
T 3lju_X 34 NARCADCGAP-DPDWASYTLG-VFICLSCSGIHRN 66 (386)
T ss_dssp GSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHT
T ss_pred CCcCccCCCC-CCCeEEeccc-EEEhhhhchHhhC
Confidence 4689999997 7899999999 8999999876665
No 31
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=24.84 E-value=43 Score=30.96 Aligned_cols=35 Identities=31% Similarity=0.618 Sum_probs=29.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
..+.|.+|++. -|.|-.-..| -.+|-.|.-..|..
T Consensus 44 ~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~l 78 (368)
T 3jue_A 44 GNAQCCDCREP-APEWASINLG-VTLCIQCSGIHRSL 78 (368)
T ss_dssp TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHH
T ss_pred CcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhcc
Confidence 35899999985 6999999999 89999998666654
No 32
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=24.61 E-value=10 Score=27.95 Aligned_cols=18 Identities=33% Similarity=0.872 Sum_probs=14.3
Q ss_pred CCCCCCcccchHHHHHHH
Q 021859 184 SGPRGPKSLCNACGIRQR 201 (306)
Q Consensus 184 rGP~G~~~LCNACGL~~r 201 (306)
.+|.||++-|.-||+.|.
T Consensus 7 ~~~~~P~~eC~lC~vkYs 24 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYS 24 (55)
T ss_dssp CCCCCCCSCCTTTTCCCC
T ss_pred CCCCCCCccccccCcccc
Confidence 567888888999988763
No 33
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=23.64 E-value=14 Score=34.35 Aligned_cols=34 Identities=29% Similarity=0.626 Sum_probs=24.9
Q ss_pred CcccccCCCCCCCcc----cCCCCCCc--ccchHHHHHHH
Q 021859 168 IRVCADCNTTKTPLW----RSGPRGPK--SLCNACGIRQR 201 (306)
Q Consensus 168 ~r~CsnC~tt~TP~W----RrGP~G~~--~LCNACGL~~r 201 (306)
...|..|+-...-.| |....|-. +.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 458999998886555 55655532 48999999885
No 34
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=22.67 E-value=50 Score=28.65 Aligned_cols=34 Identities=32% Similarity=0.658 Sum_probs=28.3
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859 168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 203 (306)
Q Consensus 168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~ 203 (306)
...|.+|++.. |.|-.-.-| -.+|-.|--..|..
T Consensus 17 n~~c~dc~~~~-p~w~s~~~g-~~~c~~c~~~hr~l 50 (278)
T 1dcq_A 17 NDVCCDCGAPD-PTWLSTNLG-ILTCIECSGIHREL 50 (278)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCcCCCCCCCC-CCeEEecCC-eEEcHHHHHHHhhc
Confidence 57999999984 699999999 78999996666643
No 35
>2qiy_C Ubiquitin carboxyl-terminal hydrolase 3; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae}
Probab=21.63 E-value=23 Score=25.46 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=7.3
Q ss_pred CC-CcccccccCC
Q 021859 33 SP-ASCHNFFEPV 44 (306)
Q Consensus 33 ss-~s~~~~fn~~ 44 (306)
.+ ++||+|||..
T Consensus 16 ~~~ie~Plf~NT~ 28 (48)
T 2qiy_C 16 SNLIQLPLFINTT 28 (48)
T ss_dssp -----CCEEESSC
T ss_pred ccceeeeeEeeCC
Confidence 45 7999999975
No 36
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.10 E-value=20 Score=25.12 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=23.9
Q ss_pred CcccccCCCCC----CCcccCCCCCCc--ccchHHHHHH
Q 021859 168 IRVCADCNTTK----TPLWRSGPRGPK--SLCNACGIRQ 200 (306)
Q Consensus 168 ~r~CsnC~tt~----TP~WRrGP~G~~--~LCNACGL~~ 200 (306)
...|..|+-.. +-+||....+.. +.|..||-.|
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 56799999854 346887766622 4899998765
Done!