BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021860
(306 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225435806|ref|XP_002285757.1| PREDICTED: uncharacterized protein LOC100265613 [Vitis vinifera]
Length = 288
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/295 (68%), Positives = 231/295 (78%), Gaps = 25/295 (8%)
Query: 15 KTHFLFNLRASSS-----PSSWKKFTQSANFAAKNRHVCRNERPNVSCSAAAFAVQETLE 69
K HF+FN SSS P K S ++ P S +A V++ L+
Sbjct: 14 KPHFIFNFNHSSSCQFLTPLPTKLLINSKLLSS----------PRTSLRTSALTVEKPLD 63
Query: 70 KTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRR 129
K S +EM+P+IDKSGRFCSPRAARELALL+ YAACLEGSDP+RLFE+R+N+RR
Sbjct: 64 K------PSEPREMLPRIDKSGRFCSPRAARELALLIAYAACLEGSDPVRLFERRMNARR 117
Query: 130 EPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSK 189
EPGYEFDK SLLEYNHMSFGGPPVTTETVEEADELLR++E+ESAIEAEVLSAPPKLVY K
Sbjct: 118 EPGYEFDKDSLLEYNHMSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGK 177
Query: 190 LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV 249
L+LRFTRKLLVAVVDKW++HV +IDKV PP WK ++PAGRILEL ILHLAMSEI V+
Sbjct: 178 LILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWK----NEPAGRILELCILHLAMSEIAVL 233
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPS 304
GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV++LEGT AS+ ++EV S
Sbjct: 234 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLEGTGITRASETTQEVVS 288
>gi|297746508|emb|CBI16564.3| unnamed protein product [Vitis vinifera]
Length = 218
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/222 (81%), Positives = 204/222 (91%), Gaps = 4/222 (1%)
Query: 83 MMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLE 142
M+P+IDKSGRFCSPRAARELALL+ YAACLEGSDP+RLFE+R+N+RREPGYEFDK SLLE
Sbjct: 1 MLPRIDKSGRFCSPRAARELALLIAYAACLEGSDPVRLFERRMNARREPGYEFDKDSLLE 60
Query: 143 YNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAV 202
YNHMSFGGPPVTTETVEEADELLR++E+ESAIEAEVLSAPPKLVY KL+LRFTRKLLVAV
Sbjct: 61 YNHMSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAV 120
Query: 203 VDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVD 262
VDKW++HV +IDKV PP WK ++PAGRILEL ILHLAMSEI V+GTRHQIVINEAVD
Sbjct: 121 VDKWNSHVLVIDKVAPPNWK----NEPAGRILELCILHLAMSEIAVLGTRHQIVINEAVD 176
Query: 263 LAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPS 304
LAKRFCDGAAPRIINGCLRTFV++LEGT AS+ ++EV S
Sbjct: 177 LAKRFCDGAAPRIINGCLRTFVKDLEGTGITRASETTQEVVS 218
>gi|224073118|ref|XP_002303980.1| predicted protein [Populus trichocarpa]
gi|222841412|gb|EEE78959.1| predicted protein [Populus trichocarpa]
Length = 218
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/220 (82%), Positives = 202/220 (91%), Gaps = 4/220 (1%)
Query: 83 MMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLE 142
MMPKIDKSGRFCSPRAARELALL++YAACLEGSDPIRLFEKR+N+RREPGYEFDK+SLLE
Sbjct: 1 MMPKIDKSGRFCSPRAARELALLIIYAACLEGSDPIRLFEKRMNARREPGYEFDKASLLE 60
Query: 143 YNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAV 202
YNHMSFGGPPVTTETVEEADEL SDE+ESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAV
Sbjct: 61 YNHMSFGGPPVTTETVEEADELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAV 120
Query: 203 VDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVD 262
VDKWD+HV +IDKV PP WK ++PAGRILE ILH+AMSEITV+GTRHQIVINEAVD
Sbjct: 121 VDKWDSHVLVIDKVSPPNWK----NEPAGRILEFCILHMAMSEITVLGTRHQIVINEAVD 176
Query: 263 LAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 302
LAKRFCDGA PRIINGCLRTF+++L G + + S A+++V
Sbjct: 177 LAKRFCDGAGPRIINGCLRTFLKDLSGASVAQTSDANEKV 216
>gi|449463840|ref|XP_004149639.1| PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus]
Length = 378
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/214 (77%), Positives = 192/214 (89%), Gaps = 4/214 (1%)
Query: 82 EMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLL 141
EM+PK+DKSG+FCSPRAARELAL +VYAACLEGSDP+RLFEKRLN+RRE GYEFDK+SL+
Sbjct: 166 EMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLM 225
Query: 142 EYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVA 201
EYNHMSFGGPPVT ET+EEADELLR DE +S IEAE+L+APPK+VYSKL+LRFTRKLLVA
Sbjct: 226 EYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVA 285
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAV 261
V D WD+ I+KV+PP WK ++PAGRILEL ILHLAMSEITV+GTRHQIVINEAV
Sbjct: 286 VGDGWDSRALKIEKVIPPTWK----NKPAGRILELCILHLAMSEITVIGTRHQIVINEAV 341
Query: 262 DLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEA 295
DLAKRFCDGAAPRIINGCLRTFV++++ ++ A
Sbjct: 342 DLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPA 375
>gi|18416739|ref|NP_567745.1| antitermination NusB domain-containing protein [Arabidopsis
thaliana]
gi|15450968|gb|AAK96755.1| putative protein [Arabidopsis thaliana]
gi|30984514|gb|AAP42720.1| At4g26370 [Arabidopsis thaliana]
gi|332659789|gb|AEE85189.1| antitermination NusB domain-containing protein [Arabidopsis
thaliana]
Length = 301
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 168/219 (76%), Positives = 189/219 (86%), Gaps = 4/219 (1%)
Query: 84 MPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEY 143
MPKIDKSGR SPRAARELAL+++YAACLEGSDPIRLFEKR+N+RREPGYEFDKSSLLEY
Sbjct: 85 MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144
Query: 144 NHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVV 203
NHMSFGGPPV TET EE DEL+R DE+ES IEAEVLSAPPKLVYSKL+LRF +KLL AVV
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVV 204
Query: 204 DKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDL 263
DKWD+HV II+K+ PP WK PAGRILE SILHLAMSE+ V+ TRH IVINEAVDL
Sbjct: 205 DKWDSHVVIIEKISPPDWK----SAPAGRILEFSILHLAMSEVAVLETRHPIVINEAVDL 260
Query: 264 AKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 302
AKRFCDG+APRIINGCLRTFV++ T+ +A + +EV
Sbjct: 261 AKRFCDGSAPRIINGCLRTFVKDRATTSTPQALELKQEV 299
>gi|2982469|emb|CAA18233.1| putative protein [Arabidopsis thaliana]
gi|7269489|emb|CAB79492.1| putative protein [Arabidopsis thaliana]
Length = 286
Score = 332 bits (852), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 168/219 (76%), Positives = 189/219 (86%), Gaps = 4/219 (1%)
Query: 84 MPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEY 143
MPKIDKSGR SPRAARELAL+++YAACLEGSDPIRLFEKR+N+RREPGYEFDKSSLLEY
Sbjct: 70 MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 129
Query: 144 NHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVV 203
NHMSFGGPPV TET EE DEL+R DE+ES IEAEVLSAPPKLVYSKL+LRF +KLL AVV
Sbjct: 130 NHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVV 189
Query: 204 DKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDL 263
DKWD+HV II+K+ PP WK PAGRILE SILHLAMSE+ V+ TRH IVINEAVDL
Sbjct: 190 DKWDSHVVIIEKISPPDWK----SAPAGRILEFSILHLAMSEVAVLETRHPIVINEAVDL 245
Query: 264 AKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 302
AKRFCDG+APRIINGCLRTFV++ T+ +A + +EV
Sbjct: 246 AKRFCDGSAPRIINGCLRTFVKDRATTSTPQALELKQEV 284
>gi|297799366|ref|XP_002867567.1| antitermination NusB domain-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313403|gb|EFH43826.1| antitermination NusB domain-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 300
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 167/219 (76%), Positives = 189/219 (86%), Gaps = 4/219 (1%)
Query: 84 MPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEY 143
MPKIDKSGR SPRAARELAL+++YAACLEGSDPIRLFEKR+N+RREPGYEFDK+SLLEY
Sbjct: 84 MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKTSLLEY 143
Query: 144 NHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVV 203
NHMSFGGPPV TET EE DEL+R DE+ES IEAEVLSAPPKLVYSKL+LRF +KLL AVV
Sbjct: 144 NHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVV 203
Query: 204 DKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDL 263
DKWD+HV II+K+ PP WK PAGRILE SILHLAMSE+ V+ TRH IVINEAVDL
Sbjct: 204 DKWDSHVVIIEKISPPDWK----SAPAGRILEFSILHLAMSEVAVLETRHPIVINEAVDL 259
Query: 264 AKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 302
AKRFCDG+APRIINGCLRTFV++ T+ +A + +EV
Sbjct: 260 AKRFCDGSAPRIINGCLRTFVKDRAATSTPQALELKQEV 298
>gi|388512429|gb|AFK44276.1| unknown [Lotus japonicus]
Length = 288
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/274 (60%), Positives = 206/274 (75%), Gaps = 14/274 (5%)
Query: 27 SPSSW----KKFTQSANFAAKNRHVC----RNERPNVSCSAAAFAVQETLEKTRESVMAS 78
SPSS+ K F ++ NR +N+ CS A+ AV +++ S +
Sbjct: 20 SPSSFATPSKCFPLPSSLVNHNRDFFLAKPQNKTLFTRCSVASSAV--AVDRDEASGLGK 77
Query: 79 SAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKS 138
+PK+DK+GRFCSPRAARELAL ++YA+CLEG DP+RLFEKRLN RRE GY+FD+
Sbjct: 78 PDTVGLPKVDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRLNERREAGYQFDQR 137
Query: 139 SLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKL 198
LLEYN MSF GPPVT ++ EEA+ELLR+ E+ES +EAE+LSAPPKLVY+KL+LRFTRKL
Sbjct: 138 KLLEYNPMSFAGPPVTVQSEEEANELLRNIEKESDLEAEILSAPPKLVYNKLILRFTRKL 197
Query: 199 LVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVIN 258
LVAV D WD+HV +I+KVVPP WK D+PAG+ILELSILHLAMSE+T + T HQIVIN
Sbjct: 198 LVAVRDSWDSHVLVINKVVPPTWK----DEPAGKILELSILHLAMSEMTKLETIHQIVIN 253
Query: 259 EAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 292
EAVDLAKR+CDGA+ RIINGCLRTF R+ E ++
Sbjct: 254 EAVDLAKRYCDGASSRIINGCLRTFYRDTEKASD 287
>gi|255564810|ref|XP_002523399.1| RNA binding protein, putative [Ricinus communis]
gi|223537349|gb|EEF38978.1| RNA binding protein, putative [Ricinus communis]
Length = 309
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/200 (77%), Positives = 173/200 (86%), Gaps = 10/200 (5%)
Query: 60 AAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIR 119
+AF V+++ E + + KEMMPKIDKSGRFCSPRAARELAL+++YAACLEGSDP+R
Sbjct: 84 SAFVVEKSAENS------TKDKEMMPKIDKSGRFCSPRAARELALMMIYAACLEGSDPVR 137
Query: 120 LFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVL 179
LFEKR+N+RRE GYEFDK+SLLEYNHMSFGGPPVTT+T+EEAD+LL SDE ESA+EAEVL
Sbjct: 138 LFEKRINARREAGYEFDKTSLLEYNHMSFGGPPVTTDTIEEADKLLSSDEIESALEAEVL 197
Query: 180 SAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSIL 239
SAPPKLVYSKLLLRFTRKLL AVV+KWD+HV IIDKV PP WK QP GRILE IL
Sbjct: 198 SAPPKLVYSKLLLRFTRKLLAAVVEKWDSHVLIIDKVAPPNWK----SQPGGRILEFCIL 253
Query: 240 HLAMSEITVVGTRHQIVINE 259
HLAMSEI VVGTRHQIVINE
Sbjct: 254 HLAMSEIAVVGTRHQIVINE 273
>gi|363807164|ref|NP_001242346.1| uncharacterized protein LOC100809333 [Glycine max]
gi|255636077|gb|ACU18383.1| unknown [Glycine max]
Length = 289
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 166/257 (64%), Positives = 201/257 (78%), Gaps = 18/257 (7%)
Query: 34 FTQSANFAAKNRHVCRNERPNVSCSAAAFAVQE--TLEKTRESVMASSAKEMMPKIDKSG 91
F+Q+A F+ +N ++ S A A E L K + +++ +PKIDK+G
Sbjct: 41 FSQNAAFSLRN---------SLRTSTFALAQHEAPVLGKPDNN---NNSSPYLPKIDKTG 88
Query: 92 RFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGP 151
RFCSPRAARELAL ++YAACLEG DP+RLFEKR+N+RRE GY+F++ LLEYNHMSFGGP
Sbjct: 89 RFCSPRAARELALSIIYAACLEGMDPVRLFEKRMNARREAGYKFNEERLLEYNHMSFGGP 148
Query: 152 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 211
PVT + EEA+ELLR EEESAIEAEVL+APPKLVY+KL+LRFT+KLLVAV D WD+HV
Sbjct: 149 PVTVGSDEEANELLRHIEEESAIEAEVLTAPPKLVYNKLILRFTKKLLVAVRDTWDSHVL 208
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
+I+K+ P WK ++PA +ILELSILHLAMSE+ V+ TRHQIVINEAVDLAKRFCDGA
Sbjct: 209 VINKIAPQNWK----NEPAAKILELSILHLAMSEMEVLETRHQIVINEAVDLAKRFCDGA 264
Query: 272 APRIINGCLRTFVRNLE 288
APRIINGCLRTF R LE
Sbjct: 265 APRIINGCLRTFFRELE 281
>gi|356521614|ref|XP_003529449.1| PREDICTED: uncharacterized protein LOC100806548 [Glycine max]
Length = 288
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 164/239 (68%), Positives = 194/239 (81%), Gaps = 10/239 (4%)
Query: 52 RPNVSCSAAAFAVQET--LEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYA 109
R ++ S A A ET L+K + S+ +PKIDK+GRFCSPRAARELAL ++YA
Sbjct: 50 RTSLRTSTFALAPHETPVLDKPDNN----SSSPSLPKIDKTGRFCSPRAARELALSIIYA 105
Query: 110 ACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDE 169
ACLEG DP+RLFEKR+N+RRE GY+F++ LLEYNHMSFGG PVT + EEA+ELLR E
Sbjct: 106 ACLEGMDPVRLFEKRMNARREAGYKFNEEKLLEYNHMSFGGSPVTVGSDEEANELLRHIE 165
Query: 170 EESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQP 229
EESAIEAEVL+APPKLVY+ L+LRFT+KLLVAV D WD+HV +I+K+VP WK ++P
Sbjct: 166 EESAIEAEVLTAPPKLVYNTLILRFTKKLLVAVRDTWDSHVLVINKIVPQNWK----NEP 221
Query: 230 AGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
AG+ILELSILHLAMSE+ V+ TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF R LE
Sbjct: 222 AGKILELSILHLAMSEMEVLETRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFFRELE 280
>gi|194688732|gb|ACF78450.1| unknown [Zea mays]
gi|414872056|tpg|DAA50613.1| TPA: RNA binding protein [Zea mays]
Length = 284
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 134/215 (62%), Positives = 169/215 (78%), Gaps = 4/215 (1%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPG+ FDK+ LL YNH
Sbjct: 73 KVDRSGRFCSPRAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFDKACLLSYNH 132
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSFGG P+ T EEA++L +E++SA EA+VLSAPPKLVY+ +LR +R+LLVAV
Sbjct: 133 MSFGGGPLEVGTEEEAEKLTSQNEKDSANEADVLSAPPKLVYNNFVLRLSRELLVAVASG 192
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV IIDK++P WK D+P RILEL ILH+AM+E+T GT H++VINEAVDLAK
Sbjct: 193 WDKHVEIIDKIIPQAWK----DEPVARILELCILHIAMAEMTSKGTPHKVVINEAVDLAK 248
Query: 266 RFCDGAAPRIINGCLRTFVRNLEGTANIEASKASK 300
RFCDG APR+INGCLRTFV++ A SK
Sbjct: 249 RFCDGGAPRVINGCLRTFVKDHVDVAGTSQGAESK 283
>gi|125587334|gb|EAZ27998.1| hypothetical protein OsJ_11964 [Oryza sativa Japonica Group]
Length = 287
Score = 286 bits (731), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/212 (62%), Positives = 170/212 (80%), Gaps = 7/212 (3%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPGY FDK+ ++ YNH
Sbjct: 75 KVDRSGRFCSPRAARELALMISYAACLEGADVVRLFDRRISARREPGYVFDKACVVNYNH 134
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSFGG P+ T EEA++L+ +E++SA EAEVLSAPPKLVY+ +LR R++LVAV
Sbjct: 135 MSFGGGPLEVGTGEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASG 194
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV II+K+ P WK D+P RILEL ILH+AM+E+T GT H+IVINEAVDLAK
Sbjct: 195 WDKHVDIINKITPQNWK----DEPVARILELCILHIAMAEMTSKGTPHKIVINEAVDLAK 250
Query: 266 RFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
RFCDG APR+INGCLRTFV++ NI+ S+
Sbjct: 251 RFCDGGAPRVINGCLRTFVKD---HMNIDTSQ 279
>gi|226509228|ref|NP_001150841.1| LOC100284474 [Zea mays]
gi|195642298|gb|ACG40617.1| RNA binding protein [Zea mays]
Length = 280
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 130/201 (64%), Positives = 165/201 (82%), Gaps = 4/201 (1%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPG+ FD + LL YNH
Sbjct: 73 KVDRSGRFCSPRAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFDXACLLSYNH 132
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSFGG P+ T EEA++L +E++SA EA+VLSAPPKLVY+ +LR +R+LLVAV
Sbjct: 133 MSFGGGPLEVGTEEEAEKLTSQNEKDSANEADVLSAPPKLVYNNFVLRLSRELLVAVASG 192
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV IIDK++P WK D+P RILEL ILH+AM+E+T GT H++VINEAVDLAK
Sbjct: 193 WDKHVEIIDKIIPQAWK----DEPVARILELCILHIAMAEMTSKGTPHKVVINEAVDLAK 248
Query: 266 RFCDGAAPRIINGCLRTFVRN 286
RFCDG APR+INGCLRTFV++
Sbjct: 249 RFCDGGAPRVINGCLRTFVKD 269
>gi|115454421|ref|NP_001050811.1| Os03g0656900 [Oryza sativa Japonica Group]
gi|31415975|gb|AAP50995.1| unknown protein [Oryza sativa Japonica Group]
gi|108710180|gb|ABF97975.1| antitermination NusB domain-containing protein, putative, expressed
[Oryza sativa Japonica Group]
gi|113549282|dbj|BAF12725.1| Os03g0656900 [Oryza sativa Japonica Group]
gi|125545109|gb|EAY91248.1| hypothetical protein OsI_12862 [Oryza sativa Indica Group]
Length = 287
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/212 (62%), Positives = 170/212 (80%), Gaps = 7/212 (3%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPGY FDK+ ++ YNH
Sbjct: 75 KVDRSGRFCSPRAARELALMISYAACLEGADVVRLFDRRISARREPGYVFDKACVVNYNH 134
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSFGG P+ T EEA++L+ +E++SA EAEVLSAPPKLVY+ +LR R++LVAV
Sbjct: 135 MSFGGGPLEVGTEEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASG 194
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV II+K+ P WK D+P RILEL ILH+AM+E+T GT H+IVINEAVDLAK
Sbjct: 195 WDKHVDIINKITPQNWK----DEPVARILELCILHIAMAEMTSKGTPHKIVINEAVDLAK 250
Query: 266 RFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
RFCDG APR+INGCLRTFV++ NI+ S+
Sbjct: 251 RFCDGGAPRVINGCLRTFVKD---HMNIDTSQ 279
>gi|345531552|dbj|BAK74849.1| plastid RNA-binding protein NUS1 [Oryza sativa Japonica Group]
Length = 287
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/212 (62%), Positives = 170/212 (80%), Gaps = 7/212 (3%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPGY FDK+ ++ YNH
Sbjct: 75 KVDRSGRFCSPRAARELALMISYAACLEGADVVRLFDRRISARREPGYVFDKACVVNYNH 134
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSFGG P+ T EEA++L+ +E++SA EAEVLSAPPKLVY+ +LR R++LVAV
Sbjct: 135 MSFGGGPLEVGTEEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASG 194
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV II+K+ P WK D+P RILEL ILH+AM+E+T GT H+IVINEAVDLAK
Sbjct: 195 WDKHVDIINKITPQNWK----DEPVARILELCILHIAMAEMTSKGTPHKIVINEAVDLAK 250
Query: 266 RFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
RFCDG APR+INGCLRTFV++ NI+ S+
Sbjct: 251 RFCDGGAPRVINGCLRTFVKD---HMNIDTSQ 279
>gi|242038659|ref|XP_002466724.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor]
gi|241920578|gb|EER93722.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor]
Length = 284
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 133/215 (61%), Positives = 171/215 (79%), Gaps = 7/215 (3%)
Query: 87 IDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHM 146
+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPG+ FDK+ LL YNHM
Sbjct: 74 VDRSGRFCSPRAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFDKACLLSYNHM 133
Query: 147 SFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKW 206
SFGG P+ T EEA++L +E++SA E +VLSAPPKLVY+ +LR +R+LLVAV W
Sbjct: 134 SFGGVPLEVGTEEEAEKLTSQNEKDSANEEDVLSAPPKLVYNNFVLRLSRELLVAVASGW 193
Query: 207 DAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKR 266
D HV IIDK++P WK D+P RILEL ILH+AM+E+T GT H++VINEAVDLAKR
Sbjct: 194 DKHVDIIDKIIPQAWK----DEPVARILELCILHIAMAEMTSKGTPHKVVINEAVDLAKR 249
Query: 267 FCDGAAPRIINGCLRTFVR---NLEGTANIEASKA 298
FCDG APR+INGCLRTFV+ ++ GT+ SK+
Sbjct: 250 FCDGGAPRVINGCLRTFVKDHVDIAGTSQGAESKS 284
>gi|223943803|gb|ACN25985.1| unknown [Zea mays]
gi|413933544|gb|AFW68095.1| hypothetical protein ZEAMMB73_110134 [Zea mays]
Length = 284
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/220 (59%), Positives = 174/220 (79%), Gaps = 9/220 (4%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPG+ F+K+ LL YNH
Sbjct: 73 KVDRSGRFCSPRAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFNKACLLNYNH 132
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSFGG P+ T +EA++L ++++SA EA+VLSAPPKLVY+ +LR +R+LLVAV
Sbjct: 133 MSFGGGPLEVGTEQEAEKLASQNDKDSANEADVLSAPPKLVYNNYVLRLSRELLVAVASG 192
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV IIDK++P WK D+P RILEL ILH+AM+E+ GT H++VINEAVDLAK
Sbjct: 193 WDKHVVIIDKIIPQAWK----DEPVARILELCILHIAMAEMASKGTPHKVVINEAVDLAK 248
Query: 266 RFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSE 305
RFCDG APR+INGCLRTFV++ +++ + S+E S+
Sbjct: 249 RFCDGGAPRVINGCLRTFVKD-----HVDVAGTSQEAKSK 283
>gi|357475091|ref|XP_003607831.1| N utilization substance protein B-like protein [Medicago
truncatula]
gi|355508886|gb|AES90028.1| N utilization substance protein B-like protein [Medicago
truncatula]
Length = 264
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/220 (63%), Positives = 169/220 (76%), Gaps = 13/220 (5%)
Query: 54 NVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLE 113
++ CS + ++T S + ++ +PK+DK+GRFCSPRAARELAL
Sbjct: 55 SLKCSLRGSTLALDKDETSVSEITDTSSISLPKLDKTGRFCSPRAARELAL--------- 105
Query: 114 GSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESA 173
RLFEKR+N RRE GYEF+K LLEYNHMSFGGPPV ET E+A+ELLR+ + ESA
Sbjct: 106 DWTRFRLFEKRMNERREVGYEFNKEKLLEYNHMSFGGPPVIVETDEDANELLRNIQLESA 165
Query: 174 IEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI 233
IE EVL+APPKLVYS+L+LRFTRKLLVAV D+WD+HV +I+KV+PP W+ ++PAG+I
Sbjct: 166 IEEEVLAAPPKLVYSRLILRFTRKLLVAVRDRWDSHVPVINKVIPPNWQ----EEPAGKI 221
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
LELSILHLAMSEI V+ TRHQIVINEAVDLAKRFCDGAAP
Sbjct: 222 LELSILHLAMSEIAVLDTRHQIVINEAVDLAKRFCDGAAP 261
>gi|357119751|ref|XP_003561597.1| PREDICTED: uncharacterized protein LOC100839883 [Brachypodium
distachyon]
Length = 280
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 125/201 (62%), Positives = 161/201 (80%), Gaps = 4/201 (1%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL+V YAACLEG+D +RLF++R+ +RREPGY F+K+SL YN
Sbjct: 70 KVDRSGRFCSPRAARELALMVAYAACLEGADVVRLFDRRVAARREPGYVFNKASLQSYNF 129
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSF G P+ T EEA++L+ +E++SA EAEVLSAPP+LVY+ +LR R++LVAV
Sbjct: 130 MSFCGGPLEVATEEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLAREMLVAVASG 189
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV II+K++P WK D+P RILEL ILH+AM+E+T T H++ INEAVDLAK
Sbjct: 190 WDQHVEIINKIIPQSWK----DEPVARILELCILHIAMAEMTSKETPHKVAINEAVDLAK 245
Query: 266 RFCDGAAPRIINGCLRTFVRN 286
RFCDG APR+INGCLRT+V++
Sbjct: 246 RFCDGGAPRVINGCLRTYVKD 266
>gi|326522879|dbj|BAJ88485.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 275
Score = 269 bits (688), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 126/214 (58%), Positives = 164/214 (76%), Gaps = 6/214 (2%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL+V YAACLEG+D +R F++R+ +RREPGY F+K+ + YN
Sbjct: 65 KVDRSGRFCSPRAARELALMVSYAACLEGADVVRHFDRRVAARREPGYVFNKACVQSYNF 124
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSF G P+ T EEA++L+ +E++SA EAEVLSAPP+LVY+ +LR R +LVAV
Sbjct: 125 MSFCGGPLEVATEEEAEKLMSQNEKDSANEAEVLSAPPRLVYNNFVLRLARDMLVAVASG 184
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV +I+K++P WK D+P RILEL ILH+AM+E+T GT H++ INEAVDLAK
Sbjct: 185 WDQHVEVINKIIPQHWK----DEPVARILELCILHIAMAEMTSKGTPHKVAINEAVDLAK 240
Query: 266 RFCDGAAPRIINGCLRTFVRNL--EGTANIEASK 297
RFCDG APR+INGCLRT+V++ GT+ SK
Sbjct: 241 RFCDGGAPRVINGCLRTYVKDHMSNGTSQTAESK 274
>gi|18483231|gb|AAL73975.1|AF466201_4 hypothetical protein M3E9.200 [Sorghum bicolor]
Length = 274
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 122/193 (63%), Positives = 157/193 (81%), Gaps = 4/193 (2%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPG+ FDK+ LL YNH
Sbjct: 73 KVDRSGRFCSPRAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFDKACLLSYNH 132
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSFGG P+ T EEA++L +E++SA E +VLSAPPKLVY+ +LR +R+LLVAV
Sbjct: 133 MSFGGVPLEVGTEEEAEKLTSQNEKDSANEEDVLSAPPKLVYNNFVLRLSRELLVAVASG 192
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD HV IIDK++P WK D+P RILEL ILH+AM+E+T GT H++VINEAVDLAK
Sbjct: 193 WDKHVDIIDKIIPQAWK----DEPVARILELCILHIAMAEMTSKGTPHKVVINEAVDLAK 248
Query: 266 RFCDGAAPRIING 278
RFCDG APR+++G
Sbjct: 249 RFCDGGAPRVMSG 261
>gi|116788226|gb|ABK24800.1| unknown [Picea sitchensis]
Length = 324
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/199 (57%), Positives = 156/199 (78%), Gaps = 4/199 (2%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
++DK+GRF SPRAARE AL+V+Y AC+EGSDP+RLFE+R+N + +FD++ L Y+H
Sbjct: 98 RLDKNGRFRSPRAAREFALVVLYEACVEGSDPLRLFERRMNMKTAMSAQFDQTLLEYYDH 157
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
M F G P+ TET E+A L DE+E+ EA +L+APPKLVY+K +L T+K+L AVV++
Sbjct: 158 MHFCGTPLYTETEEQARVLQMEDEKEALTEAAILAAPPKLVYNKFVLSMTKKILAAVVER 217
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
WD I+D+ +P WK D+ AGRILEL ++H+AM+EI V+GT++Q+VINEA+DLAK
Sbjct: 218 WDEQASILDESIPSKWK----DESAGRILELCLMHIAMAEIVVLGTQYQVVINEAIDLAK 273
Query: 266 RFCDGAAPRIINGCLRTFV 284
RFCDGA+PRIINGCLR+F+
Sbjct: 274 RFCDGASPRIINGCLRSFI 292
>gi|226503425|ref|NP_001146234.1| uncharacterized protein LOC100279806 [Zea mays]
gi|219886309|gb|ACL53529.1| unknown [Zea mays]
Length = 174
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 127/174 (72%), Gaps = 9/174 (5%)
Query: 132 GYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLL 191
G ++ LL YNHMSFGG P+ T +EA++L ++++SA EA+VLSAPPKLVY+ +
Sbjct: 9 GSAQGEACLLNYNHMSFGGGPLEVGTEQEAEKLASQNDKDSANEADVLSAPPKLVYNNYV 68
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
LR +R+LLVAV WD HV IIDK++P WK D+P RILEL ILH+AM+E+ GT
Sbjct: 69 LRLSRELLVAVASGWDKHVVIIDKIIPQAWK----DEPVARILELCILHIAMAEMASKGT 124
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSE 305
H++VINEAVDLAKRFCDG APR+INGCLRTFV++ +++ + S+E S+
Sbjct: 125 PHKVVINEAVDLAKRFCDGGAPRVINGCLRTFVKD-----HVDVAGTSQEAKSK 173
>gi|226530341|ref|NP_001146783.1| hypothetical protein [Zea mays]
gi|219888735|gb|ACL54742.1| unknown [Zea mays]
gi|413933543|gb|AFW68094.1| hypothetical protein ZEAMMB73_110134 [Zea mays]
Length = 292
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 114/138 (82%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPG+ F+K+ LL YNH
Sbjct: 73 KVDRSGRFCSPRAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFNKACLLNYNH 132
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
MSFGG P+ T +EA++L ++++SA EA+VLSAPPKLVY+ +LR +R+LLVAV
Sbjct: 133 MSFGGGPLEVGTEQEAEKLASQNDKDSANEADVLSAPPKLVYNNYVLRLSRELLVAVASG 192
Query: 206 WDAHVHIIDKVVPPIWKV 223
WD HV IIDK++P WKV
Sbjct: 193 WDKHVVIIDKIIPQAWKV 210
>gi|147795870|emb|CAN61043.1| hypothetical protein VITISV_037528 [Vitis vinifera]
Length = 183
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 117/184 (63%), Gaps = 40/184 (21%)
Query: 15 KTHFLFNLRASSS-----PSSWKKFTQSANFAAKNRHVCRNERPNVSCSAAAFAVQETLE 69
K HF+FN SSS P K S ++ P S +A V++ L+
Sbjct: 14 KPHFIFNFNHSSSCQFLTPLPTKLLINSKLLSS----------PRTSLRTSALTVEKPLD 63
Query: 70 KTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRR 129
K S +EM+P+IDKSGRFCSPRAARELALL+ YAACLEGSDP+RLFE+R+N+RR
Sbjct: 64 K------PSEPREMLPRIDKSGRFCSPRAARELALLIAYAACLEGSDPVRLFERRMNARR 117
Query: 130 -------------------EPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEE 170
EPGYEFDK SLLEYNHMSFGGPPVTTETVEEADELLR++E+
Sbjct: 118 GKAFIWGQLGRHYSTRDFEEPGYEFDKDSLLEYNHMSFGGPPVTTETVEEADELLRNNEK 177
Query: 171 ESAI 174
ESAI
Sbjct: 178 ESAI 181
>gi|449519042|ref|XP_004166544.1| PREDICTED: uncharacterized protein LOC101231047, partial [Cucumis
sativus]
Length = 258
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 87/93 (93%)
Query: 82 EMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLL 141
EM+PK+DKSG+FCSPRAARELAL +VYAACLEGSDP+RLFEKRLN+RRE GYEFDK+SL+
Sbjct: 166 EMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLM 225
Query: 142 EYNHMSFGGPPVTTETVEEADELLRSDEEESAI 174
EYNHMSFGGPPVT ET+EEADELLR DE +S I
Sbjct: 226 EYNHMSFGGPPVTVETIEEADELLRKDERDSTI 258
>gi|302803795|ref|XP_002983650.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii]
gi|300148487|gb|EFJ15146.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii]
Length = 196
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 134/202 (66%), Gaps = 8/202 (3%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+DK R SPRAAREL+L V+YA + GSDP+ + E R+ +RRE D+ L +Y+H
Sbjct: 1 KLDKFHRLRSPRAARELSLCVLYAGLVSGSDPLEVLEDRMQARRE---RVDEKVLHQYDH 57
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTR-KLLVAVVD 204
+ G P+ + EA EL E++S I+A +L+A P +VY+K +LR+ + K++ A +
Sbjct: 58 DAKSGEPLYVSSESEAKELEFQQEQQSEIDAALLTAHPYVVYNKFVLRYGKEKIIKATSE 117
Query: 205 KWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLA 264
+ ++ +++P WK D+ G++LE +I+H+A++EI V+GT IVINEAV+LA
Sbjct: 118 GREKQEAVVKELLPSTWK----DEGNGKLLETTIMHMAIAEIEVLGTSPNIVINEAVELA 173
Query: 265 KRFCDGAAPRIINGCLRTFVRN 286
KRFCDG APR++NGCL + R+
Sbjct: 174 KRFCDGFAPRVVNGCLGNYFRS 195
>gi|302817774|ref|XP_002990562.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii]
gi|300141730|gb|EFJ08439.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii]
Length = 196
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 133/202 (65%), Gaps = 8/202 (3%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+DK R SPRAAREL+L V+YA + GSDP+ + E R+ +RRE D+ L +Y+H
Sbjct: 1 KLDKFHRLRSPRAARELSLCVLYAGLVSGSDPLEVLEDRMQARRE---RVDEKVLDQYDH 57
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTR-KLLVAVVD 204
+ G P+ EA EL E++S I+A +L+A P +VY+K +LR+ + K++ A +
Sbjct: 58 DAKSGEPLYVSCESEAKELEFQQEQQSEIDAALLTAHPCVVYNKFVLRYGKEKIIKATSE 117
Query: 205 KWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLA 264
+ ++ +++P WK D+ G++LE +I+H+A++EI V+GT IVINEAV+LA
Sbjct: 118 GREKQEAVVKELLPSTWK----DESNGKLLETTIMHMAIAEIEVLGTSPNIVINEAVELA 173
Query: 265 KRFCDGAAPRIINGCLRTFVRN 286
KRFCDG APR++NGCL + R+
Sbjct: 174 KRFCDGFAPRVVNGCLGNYFRS 195
>gi|147795869|emb|CAN61042.1| hypothetical protein VITISV_037527 [Vitis vinifera]
Length = 360
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 116/188 (61%), Gaps = 39/188 (20%)
Query: 152 PVTTETVEEADELLRS-DEEESAIEAEVLSAPPKL--VYSKLLLR-FTRKLLVAVVDKWD 207
P +EE + L DE++ +I+ ++ + K + + R FTRKLLVAVVDKW+
Sbjct: 177 PFNDWELEEVERLFCCLDEKKVSIDLSMIGSWKKWKGCFVAWVGRSFTRKLLVAVVDKWN 236
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINE-------- 259
+HV +IDKV PP WK ++PAGRILEL ILHLAMSEI V+GTRHQIVINE
Sbjct: 237 SHVLVIDKVAPPNWK----NEPAGRILELCILHLAMSEIAVLGTRHQIVINEVNSFSFSL 292
Query: 260 -----------------------AVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEAS 296
AVDLAKRFCDGAAPRIINGCLRTFV++LEGT AS
Sbjct: 293 SFSHDLPVKCISTSLTLIWLLMKAVDLAKRFCDGAAPRIINGCLRTFVKDLEGTGITRAS 352
Query: 297 KASKEVPS 304
+ ++EV S
Sbjct: 353 ETTQEVVS 360
>gi|168011444|ref|XP_001758413.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690448|gb|EDQ76815.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 123/200 (61%), Gaps = 5/200 (2%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+DK GR +PRAARELAL V+YAA + G P+++FE R+ +R FDK+ L Y H
Sbjct: 13 KLDKFGRLRTPRAARELALSVLYAAFVSGVHPLKVFEDRVK-QRVVANSFDKTLLEGYEH 71
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDK 205
G V E A L + + E+++EA VL+APP LVY+ LR R L+ +
Sbjct: 72 RPDVGENVVVEDEATAMALEEALDAEASLEASVLTAPPPLVYNSFALRLARTLVKETAYR 131
Query: 206 WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
W I+ +++P WKV QP +L++ +L +A++EI ++V+NEAV+LAK
Sbjct: 132 WLQQEAILMEIIPLKWKV----QPKAALLQICVLQMALAEIEATDVPPRVVVNEAVELAK 187
Query: 266 RFCDGAAPRIINGCLRTFVR 285
RFCD AAPRIINGCL +++R
Sbjct: 188 RFCDLAAPRIINGCLGSYIR 207
>gi|42573051|ref|NP_974622.1| antitermination NusB domain-containing protein [Arabidopsis
thaliana]
gi|332659790|gb|AEE85190.1| antitermination NusB domain-containing protein [Arabidopsis
thaliana]
Length = 248
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 84/91 (92%)
Query: 84 MPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEY 143
MPKIDKSGR SPRAARELAL+++YAACLEGSDPIRLFEKR+N+RREPGYEFDKSSLLEY
Sbjct: 85 MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144
Query: 144 NHMSFGGPPVTTETVEEADELLRSDEEESAI 174
NHMSFGGPPV TET EE DEL+R DE+ES I
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKESKI 175
>gi|194700218|gb|ACF84193.1| unknown [Zea mays]
gi|414872057|tpg|DAA50614.1| TPA: hypothetical protein ZEAMMB73_306113 [Zea mays]
Length = 181
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 75/88 (85%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNH 145
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RREPG+ FDK+ LL YNH
Sbjct: 73 KVDRSGRFCSPRAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFDKACLLSYNH 132
Query: 146 MSFGGPPVTTETVEEADELLRSDEEESA 173
MSFGG P+ T EEA++L +E++SA
Sbjct: 133 MSFGGGPLEVGTEEEAEKLTSQNEKDSA 160
>gi|414872055|tpg|DAA50612.1| TPA: hypothetical protein ZEAMMB73_306113 [Zea mays]
Length = 59
Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 43/58 (74%)
Query: 243 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASK 300
M+E+T GT H++VINEAVDLAKRFCDG APR+INGCLRTFV++ A SK
Sbjct: 1 MAEMTSKGTPHKVVINEAVDLAKRFCDGGAPRVINGCLRTFVKDHVDVAGTSQGAESK 58
>gi|413933542|gb|AFW68093.1| hypothetical protein ZEAMMB73_110134 [Zea mays]
Length = 140
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%), Gaps = 7/65 (10%)
Query: 86 KIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRR------EPGYEFDKSS 139
K+D+SGRFCSPRAARELAL++ YAACLEG+D +RLF++R+++RR +P YE + +
Sbjct: 73 KVDRSGRFCSPRAARELALMISYAACLEGTDVVRLFDRRISARRGMPIELQP-YELWRGT 131
Query: 140 LLEYN 144
+N
Sbjct: 132 ARGWN 136
>gi|315924276|ref|ZP_07920500.1| N utilization substance protein B [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315622437|gb|EFV02394.1| N utilization substance protein B [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 158
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ L+ VVD A I +++ + K W MD+ G E +IL +A +E+ +
Sbjct: 55 YAAYLVDVVVDHLAA---IDERIAQYLRKDWHMDRLPG--AEKAILRVATAEMCYLDQPL 109
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPS 304
+I INEAV+LAKR+CD APR ING L +L A SKEV S
Sbjct: 110 EIAINEAVELAKRYCDEDAPRYINGILNNLGHHL-------AVDHSKEVQS 153
>gi|126656189|ref|ZP_01727573.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
gi|126622469|gb|EAZ93175.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
Length = 209
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + K W++ + A ++ IL LA++EI + ++ INEAV+LAKR+ D
Sbjct: 134 IDQQLEAVLKDWQLRRLAK--IDQDILRLAVAEILFLDVPEKVAINEAVELAKRYSDDDG 191
Query: 273 PRIINGCLRTF 283
R ING LR F
Sbjct: 192 YRFINGVLRRF 202
>gi|409993103|ref|ZP_11276258.1| transcription antitermination protein NusB [Arthrospira platensis
str. Paraca]
gi|291566673|dbj|BAI88945.1| transcription antitermination protein NusB [Arthrospira platensis
NIES-39]
gi|409936028|gb|EKN77537.1| transcription antitermination protein NusB [Arthrospira platensis
str. Paraca]
Length = 210
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 200 VAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVI 257
V ++ + + H +D + W++ GR+ ++ IL +A++E+ +G + QI +
Sbjct: 117 VKILVELNTHREALDSCLEAAMVDWQL----GRLPHIDRDILRIAVTELLYMGVQEQIAV 172
Query: 258 NEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
NEAV+LAKR+ D + R ING LR V ++
Sbjct: 173 NEAVELAKRYSDHNSYRFINGVLRRVVDQMK 203
>gi|408907935|emb|CCM10964.1| Transcription termination protein NusB [Helicobacter heilmannii
ASB1.4]
Length = 133
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 177 EVLSAPPKLVYSKLLLR----FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGR 232
E+ A P L+ K + F +LL V+++ +H +D + P+ K W + + GR
Sbjct: 24 EIFKAAPTLLEEKKIRNAQQCFALELLGGVLER----MHALDAALQPLLKDWDLKR-IGR 78
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+E +IL L EI T+ +VINEA++LAK + + APR++N L
Sbjct: 79 -MERAILRLGAFEILYTKTKPAVVINEAIELAKAYGEDNAPRLVNAVL 125
>gi|67921757|ref|ZP_00515274.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501]
gi|416386818|ref|ZP_11684979.1| Transcription termination protein NusB [Crocosphaera watsonii WH
0003]
gi|67856349|gb|EAM51591.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501]
gi|357264647|gb|EHJ13507.1| Transcription termination protein NusB [Crocosphaera watsonii WH
0003]
Length = 209
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + K W++ + A ++ IL LA++EI + ++ INEAV+LAKR+ D
Sbjct: 134 IDQQLEVVLKDWQLKRLAK--IDQDILRLAVAEILFLDIPEKVAINEAVELAKRYSDDDG 191
Query: 273 PRIINGCLRTFVRNLE 288
R ING LR F ++
Sbjct: 192 YRFINGVLRRFTDQMK 207
>gi|172036538|ref|YP_001803039.1| transcription antitermination protein NusB [Cyanothece sp. ATCC
51142]
gi|354553321|ref|ZP_08972628.1| NusB antitermination factor [Cyanothece sp. ATCC 51472]
gi|254772628|sp|B1WXY6.1|NUSB_CYAA5 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|171697992|gb|ACB50973.1| transcription termination factor, N utilization substance protein B
[Cyanothece sp. ATCC 51142]
gi|353555151|gb|EHC24540.1| NusB antitermination factor [Cyanothece sp. ATCC 51472]
Length = 209
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + K W++ + A ++ IL LA++EI + ++ INEAV+LAKR+ D
Sbjct: 134 IDEQLEAVLKDWQLKRLAK--IDQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDG 191
Query: 273 PRIINGCLRTF 283
R ING LR F
Sbjct: 192 YRFINGVLRRF 202
>gi|304440279|ref|ZP_07400169.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371328|gb|EFM24944.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 135
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
+ F R+ + ++DK++ ID+++ + W +++ + ++ IL +A+ E+ T
Sbjct: 42 VEFIREHISGMIDKFEE----IDEIIKSNLEGWSLERISN--IDRQILRIAVYELYFTST 95
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
IVINEAV++A+ + AP+ ING L T R
Sbjct: 96 ASNIVINEAVEIAREYSSNEAPKFINGILGTIFR 129
>gi|322379027|ref|ZP_08053430.1| transcription antitermination protein NusB [Helicobacter suis HS1]
gi|322380793|ref|ZP_08054899.1| transcription antitermination protein NusB [Helicobacter suis HS5]
gi|321146797|gb|EFX41591.1| transcription antitermination protein NusB [Helicobacter suis HS5]
gi|321148519|gb|EFX43016.1| transcription antitermination protein NusB [Helicobacter suis HS1]
Length = 133
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVG 250
+F +LL +D+ + +D+++ P+ K W P RI +E +IL L E+
Sbjct: 44 QFALELLKGTLDRLEN----LDQILQPLLKDW----PIKRIGSMERAILRLGAYEVLYTT 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
T+ IVINEA++LAK++ + AP++IN L +
Sbjct: 96 TKPPIVINEAIELAKQYGEDQAPKLINAILDVLAKQ 131
>gi|209525659|ref|ZP_03274196.1| NusB antitermination factor [Arthrospira maxima CS-328]
gi|423067057|ref|ZP_17055847.1| NusB antitermination factor [Arthrospira platensis C1]
gi|209493828|gb|EDZ94146.1| NusB antitermination factor [Arthrospira maxima CS-328]
gi|406711343|gb|EKD06544.1| NusB antitermination factor [Arthrospira platensis C1]
Length = 209
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 200 VAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVI 257
V ++ + + H +D + W++ R+ ++ IL +A++E+ +G + QI +
Sbjct: 117 VKILVELNTHREAVDSSLEEAMVDWQL----SRLPRIDRDILRIAVTELLYLGVQEQIAV 172
Query: 258 NEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
NEAV+LAKR+ D + R ING LR V +L
Sbjct: 173 NEAVELAKRYSDQDSYRFINGVLRRVVDHL 202
>gi|268680366|ref|YP_003304797.1| transcription antitermination factor NusB [Sulfurospirillum
deleyianum DSM 6946]
gi|268618397|gb|ACZ12762.1| transcription antitermination factor NusB [Sulfurospirillum
deleyianum DSM 6946]
Length = 136
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF 267
AH+ +ID+ + K W + + +LE +IL L EI + +VINEA++LAK+
Sbjct: 55 AHLSVIDEAINRHLKEWNLSEIG--MLERAILRLGGYEILYSELDNAVVINEAIELAKKL 112
Query: 268 CDGAAPRIINGCLRTFVRNLEGTA 291
C+ +P+ ING L + E A
Sbjct: 113 CNETSPKFINGVLDAICKEGEAKA 136
>gi|119485390|ref|ZP_01619718.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
gi|119457146|gb|EAW38272.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
Length = 210
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
ID+++ W++++ P ++ IL +A++E+ +GT+ Q+ +NEA++LAKR+ D
Sbjct: 130 IDEILNQALVDWQINRLPR---IDRDILRIAVTELLYLGTQEQVALNEAIELAKRYSDED 186
Query: 272 APRIINGCLRTFVRNLEGTA 291
+ R ING LR + L+ A
Sbjct: 187 SYRFINGVLRRVLDQLKADA 206
>gi|254974736|ref|ZP_05271208.1| N utilization substance protein B [Clostridium difficile QCD-66c26]
gi|255092125|ref|ZP_05321603.1| N utilization substance protein B [Clostridium difficile CIP
107932]
gi|255100216|ref|ZP_05329193.1| N utilization substance protein B [Clostridium difficile QCD-63q42]
gi|255306105|ref|ZP_05350277.1| N utilization substance protein B [Clostridium difficile ATCC
43255]
gi|255313862|ref|ZP_05355445.1| N utilization substance protein B [Clostridium difficile QCD-76w55]
gi|255516543|ref|ZP_05384219.1| N utilization substance protein B [Clostridium difficile QCD-97b34]
gi|255649643|ref|ZP_05396545.1| N utilization substance protein B [Clostridium difficile QCD-37x79]
gi|260682807|ref|YP_003214092.1| N utilization substance protein B [Clostridium difficile CD196]
gi|260686405|ref|YP_003217538.1| N utilization substance protein B [Clostridium difficile R20291]
gi|306519760|ref|ZP_07406107.1| N utilization substance protein B [Clostridium difficile QCD-32g58]
gi|384360389|ref|YP_006198241.1| N utilization substance protein B [Clostridium difficile BI1]
gi|423082401|ref|ZP_17070993.1| transcription antitermination factor NusB [Clostridium difficile
002-P50-2011]
gi|423087813|ref|ZP_17076199.1| transcription antitermination factor NusB [Clostridium difficile
050-P50-2011]
gi|423090779|ref|ZP_17079065.1| transcription antitermination factor NusB [Clostridium difficile
70-100-2010]
gi|260208970|emb|CBA62018.1| N utilization substance protein B [Clostridium difficile CD196]
gi|260212421|emb|CBE03285.1| N utilization substance protein B [Clostridium difficile R20291]
gi|357544127|gb|EHJ26133.1| transcription antitermination factor NusB [Clostridium difficile
050-P50-2011]
gi|357548727|gb|EHJ30587.1| transcription antitermination factor NusB [Clostridium difficile
002-P50-2011]
gi|357555894|gb|EHJ37516.1| transcription antitermination factor NusB [Clostridium difficile
70-100-2010]
Length = 168
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ K W +D+ +++SIL L++ EI + T +++ INEAV+LAK +CD +
Sbjct: 94 IDELINKHAKNWTVDRMPK--VDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKS 151
Query: 273 PRIINGCLRTFV 284
P+ ING L + V
Sbjct: 152 PKFINGILGSVV 163
>gi|255655206|ref|ZP_05400615.1| N utilization substance protein B [Clostridium difficile QCD-23m63]
gi|296451191|ref|ZP_06892932.1| transcription antitermination factor NusB [Clostridium difficile
NAP08]
gi|296880457|ref|ZP_06904419.1| transcription antitermination factor NusB [Clostridium difficile
NAP07]
gi|296260012|gb|EFH06866.1| transcription antitermination factor NusB [Clostridium difficile
NAP08]
gi|296428411|gb|EFH14296.1| transcription antitermination factor NusB [Clostridium difficile
NAP07]
Length = 168
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ K W +D+ +++SIL L++ EI + T +++ INEAV+LAK +CD +
Sbjct: 94 IDELINKHAKNWTVDRMPK--VDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKS 151
Query: 273 PRIINGCLRTFV 284
P+ ING L + V
Sbjct: 152 PKFINGILGSVV 163
>gi|126698797|ref|YP_001087694.1| N utilization substance protein B [Clostridium difficile 630]
gi|119390758|sp|Q18B61.1|NUSB_CLOD6 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|115250234|emb|CAJ68055.1| N utilization substance protein B homolog (Protein NusB)
[Clostridium difficile 630]
Length = 169
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ K W +D+ +++SIL L++ EI + T +++ INEAV+LAK +CD +
Sbjct: 95 IDELINKHAKNWTVDRMPK--VDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKS 152
Query: 273 PRIINGCLRTFV 284
P+ ING L + V
Sbjct: 153 PKFINGILGSVV 164
>gi|376003156|ref|ZP_09780971.1| Transcription antitermination protein NusB (N utilization)
[Arthrospira sp. PCC 8005]
gi|375328481|emb|CCE16724.1| Transcription antitermination protein NusB (N utilization)
[Arthrospira sp. PCC 8005]
Length = 209
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
IL +A++E+ +G + QI +NEAV+LAKR+ D + R ING LR V +L+
Sbjct: 153 ILRIAVTELLYLGVQEQIAVNEAVELAKRYSDQDSYRFINGVLRRVVDHLK 203
>gi|410943277|ref|ZP_11375018.1| NusB family protein [Gluconobacter frateurii NBRC 101659]
Length = 160
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L ++++ V K D H + ++P W + ++D P R +L A+ EIT T
Sbjct: 66 LTLMQEIVRGVTLKQDKVDHTLSDLLPEQWPISRLD-PVLR----GLLRAAVFEITETDT 120
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+IVINE +D+A F G P+++NG L T R EG A
Sbjct: 121 PDRIVINEYLDVAHGFFFGDEPKMVNGILDTLSRRGEGNA 160
>gi|284929125|ref|YP_003421647.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
gi|284809584|gb|ADB95289.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
Length = 216
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
+D + + K W++ + A ++ IL +A++EI ++ ++ INEAV+LAKR+ D
Sbjct: 134 LDNQLETVLKDWQLRRLAK--IDQDILRIAVAEILLLNIPEKVAINEAVELAKRYSDDDG 191
Query: 273 PRIINGCLRTFVRNL 287
R ING LR FV ++
Sbjct: 192 YRFINGVLRRFVDHI 206
>gi|453331241|dbj|GAC86820.1| NusB family protein [Gluconobacter thailandicus NBRC 3255]
Length = 160
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L ++++ V K D H + ++P W + ++D P R S+L A+ EI T
Sbjct: 66 LTLMQEIVRGVTLKQDKVDHTLSDLLPEQWPISRLD-PVLR----SLLRAAVFEIAETDT 120
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+IVINE +D+A F G P+++NG L T R EG A
Sbjct: 121 PDRIVINEYLDVAHGFFFGDEPKMVNGILDTLSRRGEGNA 160
>gi|434387720|ref|YP_007098331.1| transcription antitermination factor NusB [Chamaesiphon minutus PCC
6605]
gi|428018710|gb|AFY94804.1| transcription antitermination factor NusB [Chamaesiphon minutus PCC
6605]
Length = 213
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 224 WKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
W++ GR+ ++ IL LA++EI +G +I INEA++LAKR+ D ++ING LR
Sbjct: 148 WQL----GRLPKIDRDILRLAVTEIVYLGLEERIAINEAIELAKRYSDDQGRKLINGVLR 203
Query: 282 TFVRNL 287
L
Sbjct: 204 RVTEQL 209
>gi|414343516|ref|YP_006985037.1| NusB family protein [Gluconobacter oxydans H24]
gi|411028851|gb|AFW02106.1| NusB family protein [Gluconobacter oxydans H24]
Length = 160
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L ++++ V K D H + ++P W + ++D P R S+L A+ EI T
Sbjct: 66 LTLMQEIVRGVTLKQDKVDHTLSDLLPEQWPISRLD-PVLR----SLLRAAVFEIAETDT 120
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+IVINE +D+A F G P+++NG L T R EG A
Sbjct: 121 PDRIVINEYLDVAHGFFFGDEPKMVNGILDTLSRRGEGNA 160
>gi|56751642|ref|YP_172343.1| transcription antitermination protein NusB [Synechococcus elongatus
PCC 6301]
gi|81301280|ref|YP_401488.1| transcription antitermination protein NusB [Synechococcus elongatus
PCC 7942]
gi|34222700|sp|Q8GIR7.1|NUSB_SYNE7 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|81561842|sp|Q5N1J7.1|NUSB_SYNP6 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|25019707|gb|AAN71793.1| unknown [Synechococcus elongatus PCC 7942]
gi|56686601|dbj|BAD79823.1| N utilization substance protein B [Synechococcus elongatus PCC
6301]
gi|81170161|gb|ABB58501.1| transcription antitermination factor NusB [Synechococcus elongatus
PCC 7942]
Length = 213
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + W++ + L+ IL LA +EI +GT Q+ INEAV+LA R+ D
Sbjct: 130 IDRTLNDVMVDWQLHRVPR--LDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEG 187
Query: 273 PRIINGCLRTF 283
R ING LR
Sbjct: 188 RRFINGVLRRL 198
>gi|428305545|ref|YP_007142370.1| NusB antitermination factor [Crinalium epipsammum PCC 9333]
gi|428247080|gb|AFZ12860.1| NusB antitermination factor [Crinalium epipsammum PCC 9333]
Length = 209
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ K W++ + RI + IL +A++EI +G ++ INEAVDLAKR+ D
Sbjct: 131 IDELLSSTLKEWQLSR-VPRI-DRDILRIAVAEIWFLGVPDKVAINEAVDLAKRYSDEDG 188
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 189 RRFINGVLR 197
>gi|220909702|ref|YP_002485013.1| transcription antitermination protein NusB [Cyanothece sp. PCC
7425]
gi|254772629|sp|B8HYJ8.1|NUSB_CYAP4 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|219866313|gb|ACL46652.1| NusB antitermination factor [Cyanothece sp. PCC 7425]
Length = 209
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H ID ++ W+ ++ A ++ +IL +A++EI + T Q+ INEAV+LAKR+
Sbjct: 126 HRTAIDHLLETALVDWQFNRLAQ--IDRNILRIAVAEILYLKTPTQVTINEAVELAKRYS 183
Query: 269 DGAAPRIINGCLRTFVRNLEGTAN 292
D R +NG LR + +LE A
Sbjct: 184 DEDGYRFVNGVLRRTIPHLEAQAQ 207
>gi|428775700|ref|YP_007167487.1| NusB antitermination factor [Halothece sp. PCC 7418]
gi|428689979|gb|AFZ43273.1| NusB antitermination factor [Halothece sp. PCC 7418]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+T +LL +V H ID + W D+ ++ S+L +A++E+ + T
Sbjct: 118 YTLQLLTTIV----KHRQEIDDAIRESLVDWNFDRLPK--IDRSLLRIAVAEMVFLETPV 171
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
QI INEAV+L KR+ D R ING LR + LE
Sbjct: 172 QIAINEAVELGKRYSDEEGYRFINGVLRRVSKKLE 206
>gi|428309668|ref|YP_007120645.1| NusB antitermination factor [Microcoleus sp. PCC 7113]
gi|428251280|gb|AFZ17239.1| NusB antitermination factor [Microcoleus sp. PCC 7113]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + W++++ A ++ IL +A++E+T +G ++ INEAV+LAKR+ D
Sbjct: 131 IDQSLTQALQDWQLNRLAH--IDRDILRIAVAEMTFLGIPDRVAINEAVELAKRYSDDEG 188
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 189 HRFINGVLR 197
>gi|336452960|ref|YP_004607426.1| transcription termination protein NusB [Helicobacter bizzozeronii
CIII-1]
gi|335332987|emb|CCB79714.1| transcription termination protein NusB [Helicobacter bizzozeronii
CIII-1]
Length = 135
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
RF +LL + + ++ +D + P+ K W + + +E +IL L EI T+
Sbjct: 44 RFALELLEGTLTRLES----LDNTLKPLLKDWDLKRMGS--MERAILRLGAYEILHTSTK 97
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
IVINEA++LAK + + AP++IN L + +E
Sbjct: 98 SPIVINEAIELAKNYGEEQAPKLINAVLDALSKKIE 133
>gi|206901052|ref|YP_002250763.1| transcription antitermination factor NusB [Dictyoglomus
thermophilum H-6-12]
gi|254772635|sp|B5YE05.1|NUSB_DICT6 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|206740155|gb|ACI19213.1| transcription antitermination factor NusB [Dictyoglomus
thermophilum H-6-12]
Length = 144
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRF 267
+ + D ++ K WK+++ LE +IL LA++E+ T + +NEAV+LAK++
Sbjct: 50 YKDLADSIISRFSKNWKLERMGA--LERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKY 107
Query: 268 CDGAAPRIINGCLRTFVRNLE 288
A R +NG LR VRN E
Sbjct: 108 VSPEAGRFVNGILRNIVRNWE 128
>gi|428226913|ref|YP_007111010.1| NusB antitermination factor [Geitlerinema sp. PCC 7407]
gi|427986814|gb|AFY67958.1| NusB antitermination factor [Geitlerinema sp. PCC 7407]
Length = 208
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
IL +A+SEI +GT Q+ I+EAV+LAKR+ D R ING LR + L+ A
Sbjct: 153 ILRIAVSEIMYLGTPAQVAIDEAVELAKRYSDDDGRRFINGVLRRVMDYLKTKA 206
>gi|428779023|ref|YP_007170809.1| transcription antitermination factor NusB [Dactylococcopsis salina
PCC 8305]
gi|428693302|gb|AFZ49452.1| transcription antitermination factor NusB [Dactylococcopsis salina
PCC 8305]
Length = 209
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+T +LL +V+ H ID ++ W D+ ++ S+L +A++E+ + T
Sbjct: 118 YTVQLLTTIVE----HREKIDDLIRASLVDWNFDRLPK--IDRSVLRIAVAEMVFLDTPL 171
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
QI INEAV+L KR+ D R +NG LR + L
Sbjct: 172 QIAINEAVELGKRYSDEEGYRFLNGVLRRVSKQL 205
>gi|186680628|ref|YP_001863824.1| transcription antitermination protein NusB [Nostoc punctiforme PCC
73102]
gi|238689253|sp|B2J3F1.1|NUSB_NOSP7 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|186463080|gb|ACC78881.1| NusB antitermination factor [Nostoc punctiforme PCC 73102]
Length = 213
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ ++L++ V + + HIID+++ W++ + A L+ IL +A++E+ +G
Sbjct: 123 YAKELVITV----NENRHIIDELLSTALVDWQVTRLAQ--LDRDILQIAVAEMKFLGVPD 176
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLR 281
I INEAV+LAKR+ R ING LR
Sbjct: 177 SIAINEAVELAKRYSGDDGHRFINGVLR 204
>gi|319892510|ref|YP_004149385.1| transcription termination protein NusB [Staphylococcus
pseudintermedius HKU10-03]
gi|386319217|ref|YP_006015380.1| transcription antitermination factor NusB [Staphylococcus
pseudintermedius ED99]
gi|317162206|gb|ADV05749.1| Transcription termination protein NusB [Staphylococcus
pseudintermedius HKU10-03]
gi|323464388|gb|ADX76541.1| transcription antitermination factor NusB [Staphylococcus
pseudintermedius ED99]
Length = 130
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMS 244
Y L F + L+ V D H H++D+ + P W + R+L+ IL +A
Sbjct: 37 YPDLDFDFIKWLVSGVKD----HQHVLDETISPHLNGWTI----ARLLKTDRIILRMATF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
E+ T +++INEAV+LAK+F D + ING L RN
Sbjct: 89 EMNHSDTPEKVIINEAVELAKQFSDDDHYKFINGVLSHIKRN 130
>gi|197301786|ref|ZP_03166856.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
29176]
gi|197299226|gb|EDY33756.1| transcription antitermination factor NusB [Ruminococcus lactaris
ATCC 29176]
Length = 140
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 208 AHVHIIDKVVPPIWKVWK---MDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLA 264
H+ ID+++ K WK M++ IL L++ + E VG + INEAV+LA
Sbjct: 56 GHIAEIDELINQYAKGWKTTRMNKVDLAILRLAVYEMKWDEEVPVG----VAINEAVELA 111
Query: 265 KRFCDGAAPRIINGCLRTFVRNLEG 289
KRF G +P ING L R+ +G
Sbjct: 112 KRFSGGDSPSFINGVLGKIARSADG 136
>gi|154173840|ref|YP_001407739.1| transcription antitermination protein NusB [Campylobacter curvus
525.92]
gi|166215674|sp|A7GWZ7.1|NUSB_CAMC5 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|112803582|gb|EAU00926.1| transcription antitermination factor NusB [Campylobacter curvus
525.92]
Length = 131
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
+D+++ P K +++ I+EL+IL L + E+ GT ++INEA++LAK +A
Sbjct: 59 LDEILKPYLKEKDIERIG--IVELAILRLGVYEMKFTGTDKAVIINEAIELAKELGGDSA 116
Query: 273 PRIINGCL 280
P+ ING L
Sbjct: 117 PKFINGVL 124
>gi|428215039|ref|YP_007088183.1| NusB antitermination factor [Oscillatoria acuminata PCC 6304]
gi|428003420|gb|AFY84263.1| NusB antitermination factor [Oscillatoria acuminata PCC 6304]
Length = 209
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 207 DAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKR 266
+AH ID ++ W++++ A ++ IL +A++E+ +G + +I INEAV+LAKR
Sbjct: 124 NAHREEIDAILQEAMINWQLNRIAR--IDRDILRIAVAEMRYLGLQERIAINEAVELAKR 181
Query: 267 FCDGAAPRIINGCLR 281
+ R +NG LR
Sbjct: 182 YSGEDGYRFVNGVLR 196
>gi|443312393|ref|ZP_21042011.1| NusB antitermination factor [Synechocystis sp. PCC 7509]
gi|442777631|gb|ELR87906.1| NusB antitermination factor [Synechocystis sp. PCC 7509]
Length = 213
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 196 RKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQI 255
R ++VV A V ID+++ W++ + A ++ IL +A++EI +G +I
Sbjct: 116 RSYTISVVGTVSAKVKQIDEILGNALVDWQVHRLAK--IDRDILRIAIAEILFLGIPDRI 173
Query: 256 VINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 289
INEAVD+AKR+ + ING +R L+
Sbjct: 174 AINEAVDIAKRYSSDEGHKFINGVMRRVTEQLKA 207
>gi|254423258|ref|ZP_05036976.1| transcription antitermination factor NusB, putative [Synechococcus
sp. PCC 7335]
gi|196190747|gb|EDX85711.1| transcription antitermination factor NusB, putative [Synechococcus
sp. PCC 7335]
Length = 281
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 21/145 (14%)
Query: 156 ETVEEADELLRSDEEESA----IEAEVLSA--PPKLVYSKLLLRFTRKLLVAVVDK---- 205
++VE AD+LLR +++ A + +++ SA KL +K+ + LVA++ +
Sbjct: 133 KSVEAADQLLREHQQKVADIETVRSQIQSAIITAKLTITKIKTTLEPEQLVALLSRDDIR 192
Query: 206 ---------WDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
W ++ ID + + W + + A ++ IL LAM EI + ++
Sbjct: 193 GYACELLGNWISYQKAIDAQLNEAMEKWSIRRLAR--VDRDILRLAMIEIVYMDVPKKVA 250
Query: 257 INEAVDLAKRFCDGAAPRIINGCLR 281
I+EA+++AKR+ D R ING LR
Sbjct: 251 IDEAIEMAKRYSDEDGYRFINGVLR 275
>gi|242278127|ref|YP_002990256.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
gi|242121021|gb|ACS78717.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
Length = 155
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 17/104 (16%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
L+ F R+LL+ + W+A + D+V+ K WK+++ A +EL+IL LA+ E+
Sbjct: 53 LILFARELLIGI---WNAQEEL-DEVIGRYSKHWKIERIAK--VELAILRLAVYELV--- 103
Query: 251 TRHQ------IVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
H+ + INE ++LAK+F DG + ING L R+++
Sbjct: 104 --HKPDIPLKVGINEGIELAKKFGDGNSRNFINGILDAVARDID 145
>gi|218246294|ref|YP_002371665.1| transcription antitermination protein NusB [Cyanothece sp. PCC
8801]
gi|254772631|sp|B7K4P4.1|NUSB_CYAP8 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|218166772|gb|ACK65509.1| NusB antitermination factor [Cyanothece sp. PCC 8801]
Length = 211
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + W++++ ++ IL +A++EI + +++ INEA+++AKR+ D
Sbjct: 134 IDQQLEAVLVDWQLNRLPK--IDRDILRIAVAEILFLEIPNKVAINEAIEMAKRYSDDEG 191
Query: 273 PRIINGCLRTFVRNLEGTAN 292
R ING LR F L T N
Sbjct: 192 YRFINGVLRRFTERLRITNN 211
>gi|257059341|ref|YP_003137229.1| transcription antitermination protein NusB [Cyanothece sp. PCC
8802]
gi|256589507|gb|ACV00394.1| NusB antitermination factor [Cyanothece sp. PCC 8802]
Length = 235
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + W++++ ++ IL +A++EI + +++ INEA+++AKR+ D
Sbjct: 158 IDQQLEAVLVDWQLNRLPK--IDRDILRIAVAEILFLEIPNKVAINEAIEMAKRYSDDEG 215
Query: 273 PRIINGCLRTFVRNLEGTAN 292
R ING LR F L T N
Sbjct: 216 YRFINGVLRRFTERLRITNN 235
>gi|390940950|ref|YP_006404687.1| NusB antitermination factor [Sulfurospirillum barnesii SES-3]
gi|390194057|gb|AFL69112.1| NusB antitermination factor [Sulfurospirillum barnesii SES-3]
Length = 135
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF 267
AH+ ID+ + K W + + +LE +IL L E+ + +VINEA++L+K+
Sbjct: 55 AHLGTIDEAINGHLKEWNLSEIG--MLERAILRLGAYEVLYSELDNAVVINEAIELSKKL 112
Query: 268 CDGAAPRIINGCL 280
C+ +P+ ING L
Sbjct: 113 CNETSPKFINGVL 125
>gi|419596407|ref|ZP_14131412.1| transcription antitermination protein NusB [Campylobacter coli LMG
23341]
gi|419598224|ref|ZP_14133109.1| transcription antitermination protein NusB [Campylobacter coli LMG
23342]
gi|380576453|gb|EIA98509.1| transcription antitermination protein NusB [Campylobacter coli LMG
23341]
gi|380577429|gb|EIA99442.1| transcription antitermination protein NusB [Campylobacter coli LMG
23342]
Length = 132
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
FT L ++ +D IDK + P ++++ G I E +IL L E+ T +
Sbjct: 44 FTLSLYEGIIKNFDD----IDKNLNPYLNENEIEK-LGHI-ERAILRLGAYELLFTDTPN 97
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
IVINEA++LAK + +P+ ING L T V+
Sbjct: 98 AIVINEAIELAKELANDNSPKFINGVLDTLVK 129
>gi|163816787|ref|ZP_02208150.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
gi|158448044|gb|EDP25039.1| transcription antitermination factor NusB [Coprococcus eutactus
ATCC 27759]
Length = 153
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKR 266
AH ID + I + WK+ P EL+IL L + E+ T ++ INEAV+LAK+
Sbjct: 68 AHKDAIDNTISEISEGWKL--PRIGKEELAILRLGVYEVVYDETIPEKVAINEAVELAKK 125
Query: 267 FCDGAAPRIINGCLRTFVRNLE 288
+CD +A + +N L V+ E
Sbjct: 126 YCDVSASKFVNALLAKLVKKEE 147
>gi|152976586|ref|YP_001376103.1| transcription antitermination protein NusB [Bacillus cytotoxicus
NVH 391-98]
gi|189035878|sp|A7GSK0.1|NUSB_BACCN RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|152025338|gb|ABS23108.1| NusB antitermination factor [Bacillus cytotoxicus NVH 391-98]
Length = 130
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRH 253
T + L ++V + H ID+++ K WK+++ + I++ SIL LA+ E+ + H
Sbjct: 39 TNEFLDSLVGGFVEHKETIDELIRQNLKKWKLERIS--IVDRSILRLAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|379011172|ref|YP_005268984.1| N-utilization substance protein B [Acetobacterium woodii DSM 1030]
gi|375301961|gb|AFA48095.1| N-utilization substance protein B [Acetobacterium woodii DSM 1030]
Length = 138
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 188 SKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEI 246
++L L++ + L +D +AH+ ID ++ KV WK+D+ +E S+L LA+ E+
Sbjct: 37 NELDLKYGKTL----IDNTEAHLAEIDSILDDYLKVTWKIDRIPK--VEKSVLRLAICEL 90
Query: 247 TVVGTR--HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+ + ++VINEA++L K+F D +NG L V++
Sbjct: 91 KYMDEKVPFEVVINEAIELTKKFGDEDGKNYVNGILNKIVKD 132
>gi|269120364|ref|YP_003308541.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
gi|268614242|gb|ACZ08610.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
Length = 130
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+E ++L ++ EIT GT H+IVINE V+LAK++ + P ING L V
Sbjct: 79 VEKTLLKMSFYEITEAGTGHEIVINETVELAKKYGEDKTPDFINGILADLV 129
>gi|217967431|ref|YP_002352937.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
gi|254772636|sp|B8E246.1|NUSB_DICTD RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|217336530|gb|ACK42323.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
Length = 144
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRF 267
+ + D+++ K WK+++ +E +IL +A++E+ T + +NEAV+LAK++
Sbjct: 50 YKDLADEIISKFSKNWKLERIG--TIEKNILRMAIAEMFTFSDIPQGVTVNEAVELAKKY 107
Query: 268 CDGAAPRIINGCLRTFVRN 286
A R ING LR VRN
Sbjct: 108 VSPEAGRFINGILRNIVRN 126
>gi|383762525|ref|YP_005441507.1| antitermination protein NusB [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381382793|dbj|BAL99609.1| antitermination protein NusB [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 182
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 183 PKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLA 242
P++ SK F R L+ VV A II + P W ++Q A I++ IL LA
Sbjct: 77 PQIPVSKEAENFLRFLVAGVVKHQAALDEIIARYAPE----WPVEQLA--IIDRVILRLA 130
Query: 243 MSEI--TVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+ EI + T ++VINEAV+LAK F +PR +NG L
Sbjct: 131 LFEIGSSEAQTPAKVVINEAVELAKCFGGDGSPRFVNGVL 170
>gi|78183594|ref|YP_376028.1| transcription antitermination protein NusB [Synechococcus sp.
CC9902]
gi|78167888|gb|ABB24985.1| NusB antitermination factor [Synechococcus sp. CC9902]
Length = 211
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 270
ID + + + W++ GR+ ++ IL LA+ ++ +GT + NEAV+LA R+ D
Sbjct: 134 IDARLDQVMEGWRL----GRLPRIDRDILRLAVVDLQTMGTPAPVAFNEAVELANRYSDE 189
Query: 271 AAPRIINGCLRTF 283
R+ING LR F
Sbjct: 190 QGRRMINGVLRRF 202
>gi|289168504|ref|YP_003446773.1| transcription termination factor nusB [Streptococcus mitis B6]
gi|288908071|emb|CBJ22911.1| transcription termination factor nusB [Streptococcus mitis B6]
Length = 139
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + D I++ + P W V ++ ++E ++L L + EIT T
Sbjct: 51 FLLNLVSGVQTQKDELDKQINQHLKPGWTVERL-----TLVEKNLLRLGIFEITSFDTPQ 105
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEA++LAK F D + R ING L FV
Sbjct: 106 LVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|332705392|ref|ZP_08425470.1| transcription antitermination factor NusB [Moorea producens 3L]
gi|332355752|gb|EGJ35214.1| transcription antitermination factor NusB [Moorea producens 3L]
Length = 209
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ K W++ + ++ IL +A++EI +G ++ INEAV+LAKR+ D
Sbjct: 130 IDQMLNQSLKDWQLKRLPR--IDRDILRMAVAEIAFLGIPDRVAINEAVELAKRYSDEEG 187
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 188 HRFINGVLR 196
>gi|335029569|ref|ZP_08523076.1| transcription antitermination factor NusB [Streptococcus infantis
SK1076]
gi|334268866|gb|EGL87298.1| transcription antitermination factor NusB [Streptococcus infantis
SK1076]
Length = 140
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +D+ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAQKEELDKQITQHLKAGWTIDRLT--LVEKNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKSFSDQKSARFINGLLSQFV 136
>gi|385261243|ref|ZP_10039374.1| transcription antitermination factor NusB [Streptococcus sp. SK140]
gi|385189328|gb|EIF36796.1| transcription antitermination factor NusB [Streptococcus sp. SK140]
Length = 140
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
LV +V A +DK + K W +D+ ++E ++L L + EIT T +
Sbjct: 51 FLVELVSGVQAKKDDLDKQITQHLKTGWTIDRLT--LVEKNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKSFSDQKSARFINGLLSQFV 136
>gi|322391457|ref|ZP_08064926.1| N utilization substance protein B [Streptococcus peroris ATCC
700780]
gi|321145540|gb|EFX40932.1| N utilization substance protein B [Streptococcus peroris ATCC
700780]
Length = 140
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +D+ ++E ++L L + EIT T +
Sbjct: 51 FLINLVTGVQAQKEELDKQITQHLKAGWTIDRLT--LVEKNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKSFSDQKSARFINGLLSQFV 136
>gi|188586319|ref|YP_001917864.1| NusB antitermination factor [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229620365|sp|B2A534.1|NUSB_NATTJ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|179351006|gb|ACB85276.1| NusB antitermination factor [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 139
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV---VGTRHQIVIN 258
VV + ++++ ID+ + + WK+D+ + ++LSIL LA+SEI + TR + IN
Sbjct: 51 VVSRTESNLQKIDEYIEKFSENWKIDRLSK--VDLSILRLAISEILFFDDIPTR--VSIN 106
Query: 259 EAVDLAKRFCDGAAPRIINGCL 280
EAV+LAK+F A ING L
Sbjct: 107 EAVELAKKFSTDKASGYINGIL 128
>gi|417936331|ref|ZP_12579648.1| transcription antitermination factor NusB [Streptococcus infantis
X]
gi|343403240|gb|EGV15745.1| transcription antitermination factor NusB [Streptococcus infantis
X]
Length = 140
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +D+ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAQKEELDKQITQHLKAGWTIDRLT--LVEKNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D R ING L FV
Sbjct: 109 VNEAIELAKSFSDKKTARFINGLLSQFV 136
>gi|57168521|ref|ZP_00367654.1| transcription antitermination factor NusB [Campylobacter coli
RM2228]
gi|305432938|ref|ZP_07402096.1| transcription antitermination factor NusB [Campylobacter coli JV20]
gi|419536334|ref|ZP_14075816.1| transcription antitermination protein NusB [Campylobacter coli
111-3]
gi|419539778|ref|ZP_14079025.1| transcription antitermination protein NusB [Campylobacter coli
Z163]
gi|419542032|ref|ZP_14081165.1| transcription antitermination protein NusB [Campylobacter coli
2548]
gi|419546117|ref|ZP_14084879.1| transcription antitermination protein NusB [Campylobacter coli
2680]
gi|419550455|ref|ZP_14088960.1| transcription antitermination protein NusB [Campylobacter coli
2688]
gi|419552543|ref|ZP_14090846.1| transcription antitermination protein NusB [Campylobacter coli
2692]
gi|419553939|ref|ZP_14092092.1| transcription antitermination protein NusB [Campylobacter coli
2698]
gi|419560032|ref|ZP_14097683.1| transcription antitermination protein NusB [Campylobacter coli
86119]
gi|419562546|ref|ZP_14100053.1| transcription antitermination protein NusB [Campylobacter coli
1091]
gi|419565663|ref|ZP_14102935.1| transcription antitermination protein NusB [Campylobacter coli
1148]
gi|419567789|ref|ZP_14104942.1| transcription antitermination protein NusB [Campylobacter coli
1417]
gi|419569674|ref|ZP_14106732.1| transcription antitermination protein NusB [Campylobacter coli
7--1]
gi|419571375|ref|ZP_14108329.1| transcription antitermination protein NusB [Campylobacter coli
132-6]
gi|419573406|ref|ZP_14110209.1| transcription antitermination protein NusB [Campylobacter coli
1891]
gi|419575919|ref|ZP_14112594.1| transcription antitermination protein NusB [Campylobacter coli
1909]
gi|419577492|ref|ZP_14114045.1| transcription antitermination protein NusB [Campylobacter coli
59-2]
gi|419581133|ref|ZP_14117442.1| transcription antitermination protein NusB [Campylobacter coli
1957]
gi|419582949|ref|ZP_14119141.1| transcription antitermination protein NusB [Campylobacter coli
1961]
gi|419584728|ref|ZP_14120793.1| transcription antitermination protein NusB [Campylobacter coli
202/04]
gi|419586857|ref|ZP_14122813.1| transcription antitermination protein NusB [Campylobacter coli
67-8]
gi|419590702|ref|ZP_14126066.1| transcription antitermination protein NusB [Campylobacter coli
37/05]
gi|419592469|ref|ZP_14127717.1| transcription antitermination protein NusB [Campylobacter coli LMG
9854]
gi|419594428|ref|ZP_14129556.1| transcription antitermination protein NusB [Campylobacter coli LMG
23336]
gi|419601310|ref|ZP_14136028.1| transcription antitermination protein NusB [Campylobacter coli LMG
23344]
gi|419604105|ref|ZP_14138579.1| transcription antitermination protein NusB [Campylobacter coli LMG
9853]
gi|419607954|ref|ZP_14142156.1| transcription antitermination protein NusB [Campylobacter coli H6]
gi|419610564|ref|ZP_14144625.1| transcription antitermination protein NusB [Campylobacter coli H8]
gi|419612127|ref|ZP_14146009.1| transcription antitermination protein NusB [Campylobacter coli H9]
gi|419613855|ref|ZP_14147649.1| transcription antitermination protein NusB [Campylobacter coli H56]
gi|419616859|ref|ZP_14150494.1| transcription antitermination protein NusB [Campylobacter coli
Z156]
gi|57020026|gb|EAL56703.1| transcription antitermination factor NusB [Campylobacter coli
RM2228]
gi|304444092|gb|EFM36747.1| transcription antitermination factor NusB [Campylobacter coli JV20]
gi|380518488|gb|EIA44583.1| transcription antitermination protein NusB [Campylobacter coli
111-3]
gi|380518796|gb|EIA44887.1| transcription antitermination protein NusB [Campylobacter coli
Z163]
gi|380523059|gb|EIA48719.1| transcription antitermination protein NusB [Campylobacter coli
2680]
gi|380524025|gb|EIA49653.1| transcription antitermination protein NusB [Campylobacter coli
2548]
gi|380530617|gb|EIA55684.1| transcription antitermination protein NusB [Campylobacter coli
2688]
gi|380531188|gb|EIA56220.1| transcription antitermination protein NusB [Campylobacter coli
2692]
gi|380533581|gb|EIA58503.1| transcription antitermination protein NusB [Campylobacter coli
2698]
gi|380537713|gb|EIA62255.1| transcription antitermination protein NusB [Campylobacter coli
86119]
gi|380540725|gb|EIA65022.1| transcription antitermination protein NusB [Campylobacter coli
1091]
gi|380547269|gb|EIA71192.1| transcription antitermination protein NusB [Campylobacter coli
1417]
gi|380548583|gb|EIA72483.1| transcription antitermination protein NusB [Campylobacter coli
1148]
gi|380548924|gb|EIA72813.1| transcription antitermination protein NusB [Campylobacter coli
7--1]
gi|380551646|gb|EIA75232.1| transcription antitermination protein NusB [Campylobacter coli
1891]
gi|380552615|gb|EIA76171.1| transcription antitermination protein NusB [Campylobacter coli
1909]
gi|380553733|gb|EIA77235.1| transcription antitermination protein NusB [Campylobacter coli
132-6]
gi|380557200|gb|EIA80419.1| transcription antitermination protein NusB [Campylobacter coli
59-2]
gi|380559864|gb|EIA82992.1| transcription antitermination protein NusB [Campylobacter coli
1957]
gi|380563332|gb|EIA86170.1| transcription antitermination protein NusB [Campylobacter coli
202/04]
gi|380564354|gb|EIA87164.1| transcription antitermination protein NusB [Campylobacter coli
1961]
gi|380565625|gb|EIA88346.1| transcription antitermination protein NusB [Campylobacter coli
67-8]
gi|380570305|gb|EIA92733.1| transcription antitermination protein NusB [Campylobacter coli
37/05]
gi|380572176|gb|EIA94510.1| transcription antitermination protein NusB [Campylobacter coli LMG
9854]
gi|380576028|gb|EIA98089.1| transcription antitermination protein NusB [Campylobacter coli LMG
23336]
gi|380580756|gb|EIB02493.1| transcription antitermination protein NusB [Campylobacter coli LMG
9853]
gi|380581824|gb|EIB03534.1| transcription antitermination protein NusB [Campylobacter coli LMG
23344]
gi|380586250|gb|EIB07556.1| transcription antitermination protein NusB [Campylobacter coli H6]
gi|380589753|gb|EIB10794.1| transcription antitermination protein NusB [Campylobacter coli H8]
gi|380591003|gb|EIB12001.1| transcription antitermination protein NusB [Campylobacter coli H9]
gi|380593748|gb|EIB14568.1| transcription antitermination protein NusB [Campylobacter coli H56]
gi|380594773|gb|EIB15549.1| transcription antitermination protein NusB [Campylobacter coli
Z156]
Length = 132
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
FT L ++ D IDK + P ++++ G I E +IL L E+ T +
Sbjct: 44 FTLSLYEGIIKNLDD----IDKNLNPYLNENEIEK-LGHI-ERAILRLGAYELLFTDTPN 97
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
IVINEA++LAK + +P+ ING L T V+
Sbjct: 98 AIVINEAIELAKELANDNSPKFINGVLDTLVK 129
>gi|210622490|ref|ZP_03293195.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
gi|210154203|gb|EEA85209.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
Length = 173
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 213 IDKVVPPIWKVWK-MDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDG 270
ID+ + K W M P ++++IL LA++EI + + ++ INEA+++AK +CD
Sbjct: 99 IDEAIDKYAKGWSIMTMPK---VDVAILRLAIAEIGFIDSIPEKVSINEAIEMAKMYCDD 155
Query: 271 AAPRIINGCLRTFVRN 286
+P+ ING L +++ +
Sbjct: 156 KSPKFINGVLGSYLND 171
>gi|363894986|ref|ZP_09322006.1| transcription antitermination factor NusB [Eubacteriaceae bacterium
ACC19a]
gi|361959743|gb|EHL13004.1| transcription antitermination factor NusB [Eubacteriaceae bacterium
ACC19a]
Length = 215
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 211 HIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
HI +++ ++ WK+ GR+ ++L+IL A+ +I + +++ INEA+++AK +
Sbjct: 135 HIDEQIEKLLFNTWKI----GRLSKIDLAILRTAILDIEYMNIPYKVAINEALNMAKEYS 190
Query: 269 DGAAPRIINGCLRTFVRN 286
D + ING L+ + +N
Sbjct: 191 DEKSSSFINGVLKEYAQN 208
>gi|319956407|ref|YP_004167670.1| nusb antitermination factor [Nitratifractor salsuginis DSM 16511]
gi|319418811|gb|ADV45921.1| NusB antitermination factor [Nitratifractor salsuginis DSM 16511]
Length = 143
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F+ +L ++ D ID+ + + W + G++ E +IL L EI + GT
Sbjct: 45 FSMRLFKGTIENLDK----IDEEIQKHLESWDYSK-IGKV-EKAILRLGAYEILIEGTDR 98
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
I+INEAV+LAK D +P+ ING L
Sbjct: 99 PIIINEAVELAKELADEKSPQFINGVL 125
>gi|363889554|ref|ZP_09316914.1| transcription antitermination factor NusB [Eubacteriaceae bacterium
CM5]
gi|361966621|gb|EHL19520.1| transcription antitermination factor NusB [Eubacteriaceae bacterium
CM5]
Length = 215
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 211 HIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
HI +++ ++ WK+ GR+ ++L+IL A+ +I + +++ INEA+++AK +
Sbjct: 135 HIDEQIEKLLFNTWKI----GRLSKIDLAILRTAILDIEYMNIPYKVAINEALNMAKEYS 190
Query: 269 DGAAPRIINGCLRTFVRN 286
D + ING L+ + +N
Sbjct: 191 DEKSSSFINGVLKEYAQN 208
>gi|363891981|ref|ZP_09319154.1| transcription antitermination factor NusB [Eubacteriaceae bacterium
CM2]
gi|402839178|ref|ZP_10887671.1| putative transcription antitermination factor NusB [Eubacteriaceae
bacterium OBRC8]
gi|361964617|gb|EHL17639.1| transcription antitermination factor NusB [Eubacteriaceae bacterium
CM2]
gi|402270717|gb|EJU19975.1| putative transcription antitermination factor NusB [Eubacteriaceae
bacterium OBRC8]
Length = 215
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 211 HIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
HI +++ ++ WK+ GR+ ++L+IL A+ +I + +++ INEA+++AK +
Sbjct: 135 HIDEQIEKLLFNTWKI----GRLSKIDLAILRTAILDIEYMNIPYKVAINEALNMAKEYS 190
Query: 269 DGAAPRIINGCLRTFVRN 286
D + ING L+ + +N
Sbjct: 191 DEKSSSFINGVLKEYAQN 208
>gi|315453162|ref|YP_004073432.1| N utilization substance protein B-like protein [Helicobacter felis
ATCC 49179]
gi|315132214|emb|CBY82842.1| N utilization substance protein B homolog [Helicobacter felis ATCC
49179]
Length = 134
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 171 ESAIEAEVLSAPPKLVYSKL---LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMD 227
ES EA + SAP K+ RF LL ++ H+ +D + P+ K W +
Sbjct: 19 ESGNEAMLKSAPDFFTQKKIKNAQQRFALDLLEGTLE----HLPSLDNALTPLLKDWDL- 73
Query: 228 QPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
RI +E +IL L EI T +VINEA++L+K + + AP++IN L +
Sbjct: 74 ---ARIGSMERAILRLGAYEILHTPTNPVVVINEAIELSKNYGEDNAPKLINAILDALCK 130
>gi|425737352|ref|ZP_18855625.1| transcription antitermination protein NusB [Staphylococcus
massiliensis S46]
gi|425482700|gb|EKU49856.1| transcription antitermination protein NusB [Staphylococcus
massiliensis S46]
Length = 131
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMS 244
Y L F L+ V D H ++D + P K W + + + RI IL +A
Sbjct: 37 YPDLDFDFIHWLVSGVKD----HESVLDNKIQPYLKDWTISRLLKSDRI----ILRIATY 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
EI T +++INEA++LAK++ D + +NG L ++N
Sbjct: 89 EIGYSDTPDKVIINEAIELAKQYSDEGHYKFVNGVLSNIIKN 130
>gi|149200420|ref|ZP_01877436.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
gi|149136489|gb|EDM24926.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
Length = 156
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F R+++ V+DK V ID + K WK+D+ A + ++L +A+ E+ + + H
Sbjct: 61 FAREIIQGVLDK----VKEIDAYITEEAKNWKIDRMA--TTDRNVLRIAVFELMEIKSNH 114
Query: 254 QIVI-NEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
+VI NEAV+LAK F + + + +NG T R L
Sbjct: 115 PVVIVNEAVELAKTFGNTDSFKFVNGIGDTLARKL 149
>gi|428219237|ref|YP_007103702.1| NusB antitermination factor [Pseudanabaena sp. PCC 7367]
gi|427991019|gb|AFY71274.1| NusB antitermination factor [Pseudanabaena sp. PCC 7367]
Length = 213
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 190 LLLRFTRK-----LLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ-PAGRILELSILHLAM 243
L+++F R+ + ++ +A+ ID+ + + W++++ P ++ IL +A+
Sbjct: 109 LMVQFARQPEVKEYAIEILTTVNANRAKIDETIAAALEGWQLNRLPK---IDQKILRIAV 165
Query: 244 SEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 289
+E+ + T QI INEA++LAKR+ R ING LRT L+
Sbjct: 166 AELMYLETPTQIAINEAIELAKRYSGEDGYRFINGVLRTISNRLKA 211
>gi|443318772|ref|ZP_21048016.1| NusB antitermination factor [Leptolyngbya sp. PCC 6406]
gi|442781598|gb|ELR91694.1| NusB antitermination factor [Leptolyngbya sp. PCC 6406]
Length = 225
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H +D + + W++ + A ++ +L LA+ E+ +G ++ INEAV+LAKR+
Sbjct: 126 HRQAVDAELDQVMVAWQVKRLAQ--IDRDLLRLAVVEMQFLGVPDRVAINEAVELAKRYS 183
Query: 269 DGAAPRIINGCLRTFV 284
D R ING LR ++
Sbjct: 184 DEDGYRFINGVLRRWL 199
>gi|34556732|ref|NP_906547.1| transcription antitermination protein NusB [Wolinella succinogenes
DSM 1740]
gi|39931695|sp|Q7MAE9.1|NUSB_WOLSU RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|34482446|emb|CAE09447.1| TRANSCRIPTION TERMINATION PROTEIN [Wolinella succinogenes]
Length = 135
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF 267
AH+ ID+ + K W + +E +IL L EI G ++INEAV+L+K F
Sbjct: 55 AHLGEIDEEIKKHLKEWDFSRIGD--MERAILRLGTFEIVYSGVDRAVIINEAVELSKTF 112
Query: 268 CDGAAPRIINGCL 280
+ +PR +NG L
Sbjct: 113 GNDNSPRFVNGVL 125
>gi|436840272|ref|YP_007324650.1| N utilization substance protein B homolog [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432169178|emb|CCO22544.1| N utilization substance protein B homolog [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 187
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVV 249
L+ + R+LL+ + W + + D+V+ K WK+++ A +EL+IL LA E I
Sbjct: 85 LILYARELLLGI---WSSQEEL-DEVIGRYSKHWKIERIAK--VELAILRLAAYELIYKA 138
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++ INEA++LAK+F DG + ING L R+++
Sbjct: 139 DIPLKVGINEAIELAKKFGDGNSRNFINGILDAVARDID 177
>gi|222823552|ref|YP_002575126.1| transcription antitermination protein NusB [Campylobacter lari
RM2100]
gi|254772621|sp|B9KFP0.1|NUSB_CAMLR RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|222538774|gb|ACM63875.1| transcription antitermination factor NusB [Campylobacter lari
RM2100]
Length = 132
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 196 RKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQI 255
RK + + + + + ++D+ + K K+D A +E +IL L EI T+ I
Sbjct: 42 RKFTLDLYNGINEQLALLDEKINECLKEHKLDGVAS--IEKAILRLGAYEILFTSTQKAI 99
Query: 256 VINEAVDLAKRFCDGAAPRIINGCL 280
+INEA++LAK AP+ ING L
Sbjct: 100 IINEAIELAKEMAGDNAPKFINGVL 124
>gi|358067024|ref|ZP_09153510.1| transcription antitermination factor NusB [Johnsonella ignava ATCC
51276]
gi|356694873|gb|EHI56528.1| transcription antitermination factor NusB [Johnsonella ignava ATCC
51276]
Length = 165
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID+ + + K WK+D+ G++ EL+IL LA+ E+ + ++ +NEAV+LAKRF
Sbjct: 95 IDRAISSVSKGWKLDR-MGKV-ELTILRLAVYEMEYDDSIPKKVAVNEAVELAKRFGGDD 152
Query: 272 APRIINGCLRTFV 284
+P +NG L +
Sbjct: 153 SPAFVNGILAKLI 165
>gi|402547801|ref|ZP_10844666.1| transcription antitermination factor NusB [Campylobacter sp.
FOBRC14]
gi|401015828|gb|EJP74605.1| transcription antitermination factor NusB [Campylobacter sp.
FOBRC14]
Length = 131
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
+D+++ P K +++ I+EL+IL L + E+ T ++INEA++LAK +A
Sbjct: 59 LDEILKPYLKEKDIERIG--IVELAILRLGVYEMKFTDTDKAVIINEAIELAKELGGDSA 116
Query: 273 PRIINGCL 280
P+ ING L
Sbjct: 117 PKFINGVL 124
>gi|168485566|ref|ZP_02710074.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC1087-00]
gi|418184229|ref|ZP_12820777.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47283]
gi|419510365|ref|ZP_14050009.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP141]
gi|421212482|ref|ZP_15669444.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070108]
gi|421214674|ref|ZP_15671605.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070109]
gi|183571084|gb|EDT91612.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC1087-00]
gi|353851827|gb|EHE31817.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47283]
gi|379633558|gb|EHZ98127.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP141]
gi|395580889|gb|EJG41362.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070108]
gi|395582233|gb|EJG42695.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070109]
Length = 140
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + KV W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGIQAKKEELDKQITQHLKVGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|383788445|ref|YP_005473014.1| N utilization substance protein B [Caldisericum exile AZM16c01]
gi|381364082|dbj|BAL80911.1| N utilization substance protein B homolog [Caldisericum exile
AZM16c01]
Length = 136
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRFCDGA 271
ID+ + + K W ++ ++ IL LA+ EI VVG + I++ EAV+LAK++ D
Sbjct: 57 IDEKIKSLLKNWSFERLNA--VDKEILRLAIYEIENVVGEDYGIIVFEAVELAKKYGDLN 114
Query: 272 APRIINGCLRTFVR 285
+ +NG LR+F+R
Sbjct: 115 SGDFVNGILRSFLR 128
>gi|419537973|ref|ZP_14077336.1| transcription antitermination protein NusB [Campylobacter coli
90-3]
gi|419548060|ref|ZP_14086693.1| transcription antitermination protein NusB [Campylobacter coli
2685]
gi|419555814|ref|ZP_14093819.1| transcription antitermination protein NusB [Campylobacter coli
84-2]
gi|419564556|ref|ZP_14101934.1| transcription antitermination protein NusB [Campylobacter coli
1098]
gi|419579057|ref|ZP_14115477.1| transcription antitermination protein NusB [Campylobacter coli
1948]
gi|419602902|ref|ZP_14137469.1| transcription antitermination protein NusB [Campylobacter coli
151-9]
gi|419606848|ref|ZP_14141202.1| transcription antitermination protein NusB [Campylobacter coli LMG
9860]
gi|380519148|gb|EIA45233.1| transcription antitermination protein NusB [Campylobacter coli
90-3]
gi|380527916|gb|EIA53256.1| transcription antitermination protein NusB [Campylobacter coli
2685]
gi|380535527|gb|EIA60227.1| transcription antitermination protein NusB [Campylobacter coli
84-2]
gi|380542145|gb|EIA66387.1| transcription antitermination protein NusB [Campylobacter coli
1098]
gi|380558170|gb|EIA81356.1| transcription antitermination protein NusB [Campylobacter coli
1948]
gi|380580059|gb|EIB01828.1| transcription antitermination protein NusB [Campylobacter coli
151-9]
gi|380586518|gb|EIB07812.1| transcription antitermination protein NusB [Campylobacter coli LMG
9860]
Length = 132
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
FT L ++ D IDK + P ++++ G I E +IL L E+ T +
Sbjct: 44 FTLSLYEGIIKNLDD----IDKNLNPCLNENEIEK-LGHI-ERAILRLGAYELLFTDTPN 97
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
IVINEA++LAK + +P+ ING L T V+
Sbjct: 98 AIVINEAIELAKELANDNSPKFINGVLDTLVK 129
>gi|428771163|ref|YP_007162953.1| NusB antitermination factor [Cyanobacterium aponinum PCC 10605]
gi|428685442|gb|AFZ54909.1| NusB antitermination factor [Cyanobacterium aponinum PCC 10605]
Length = 209
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID ++ + W +++ ++ +IL LA++E+ H+I INEA+++AK++ D
Sbjct: 134 IDSLIDGLMTDWTVNRLTQ--IDANILRLAVAEMKFFQQDHKIAINEAIEIAKQYSDDDG 191
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 192 YRFINGVLR 200
>gi|406926426|gb|EKD62653.1| transcription antitermination factor NusB [uncultured bacterium]
Length = 118
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
K ++A D D + K P W + K+++ ++L+IL LA+ EIT T ++V
Sbjct: 34 KAILANKDVLDTQI----KSAAPAWPIDKLNK-----IDLAILRLAVYEITNSNTPSKVV 84
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 289
I+EAV+LAK + ++ +NG L T ++ +
Sbjct: 85 IDEAVELAKEYGSESSSSFVNGVLGTILKQTDA 117
>gi|148993974|ref|ZP_01823344.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP9-BS68]
gi|168488122|ref|ZP_02712321.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP195]
gi|225858284|ref|YP_002739794.1| transcription antitermination protein NusB [Streptococcus
pneumoniae 70585]
gi|387625889|ref|YP_006062061.1| N utilization substance protein B [Streptococcus pneumoniae INV104]
gi|417678392|ref|ZP_12327792.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17570]
gi|418125047|ref|ZP_12761968.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44511]
gi|418190889|ref|ZP_12827394.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47388]
gi|418213625|ref|ZP_12840360.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA54644]
gi|418233641|ref|ZP_12860222.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA08780]
gi|419441853|ref|ZP_13981888.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13224]
gi|419454827|ref|ZP_13994790.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP04]
gi|419483688|ref|ZP_14023464.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA43257]
gi|419507514|ref|ZP_14047170.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA49542]
gi|421221973|ref|ZP_15678770.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070531]
gi|421278215|ref|ZP_15729027.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17301]
gi|421297899|ref|ZP_15748591.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA60080]
gi|444382726|ref|ZP_21180926.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS8106]
gi|444385195|ref|ZP_21183274.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS8203]
gi|254772657|sp|C1C5G8.1|NUSB_STRP7 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|147927563|gb|EDK78590.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP9-BS68]
gi|183573223|gb|EDT93751.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP195]
gi|225721195|gb|ACO17049.1| transcription antitermination factor NusB [Streptococcus pneumoniae
70585]
gi|301793671|emb|CBW36056.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae INV104]
gi|332075276|gb|EGI85746.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17570]
gi|353800612|gb|EHD80922.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44511]
gi|353858488|gb|EHE38448.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47388]
gi|353870908|gb|EHE50779.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA54644]
gi|353890225|gb|EHE69992.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA08780]
gi|379555349|gb|EHZ20418.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13224]
gi|379583199|gb|EHZ48076.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA43257]
gi|379613649|gb|EHZ78361.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA49542]
gi|379631268|gb|EHZ95848.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP04]
gi|395590261|gb|EJG50571.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070531]
gi|395883334|gb|EJG94377.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17301]
gi|395903983|gb|EJH14905.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA60080]
gi|444250475|gb|ELU56954.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS8203]
gi|444251374|gb|ELU57844.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS8106]
Length = 140
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + KV W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKVGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|125717317|ref|YP_001034450.1| transcription antitermination protein NusB [Streptococcus sanguinis
SK36]
gi|125497234|gb|ABN43900.1| Nitrogen utilization substance protein B, putative [Streptococcus
sanguinis SK36]
Length = 148
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 79 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 136
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 137 FINGILSQFI 146
>gi|323353378|ref|ZP_08087911.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
gi|422863955|ref|ZP_16910584.1| N utilization substance protein B [Streptococcus sanguinis SK408]
gi|322121324|gb|EFX93087.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
gi|327472778|gb|EGF18205.1| N utilization substance protein B [Streptococcus sanguinis SK408]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|422880081|ref|ZP_16926545.1| N utilization substance protein B [Streptococcus sanguinis SK1059]
gi|422930314|ref|ZP_16963253.1| N utilization substance protein B [Streptococcus sanguinis ATCC
29667]
gi|422930905|ref|ZP_16963836.1| N utilization substance protein B [Streptococcus sanguinis SK340]
gi|332364657|gb|EGJ42426.1| N utilization substance protein B [Streptococcus sanguinis SK1059]
gi|339613808|gb|EGQ18530.1| N utilization substance protein B [Streptococcus sanguinis ATCC
29667]
gi|339620881|gb|EGQ25449.1| N utilization substance protein B [Streptococcus sanguinis SK340]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|355672448|ref|ZP_09058378.1| transcription antitermination factor NusB [Clostridium citroniae
WAL-17108]
gi|354815149|gb|EHE99745.1| transcription antitermination factor NusB [Clostridium citroniae
WAL-17108]
Length = 144
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 152 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKW---DA 208
P E + + D+ +S EEE VL K+ + + ++DK DA
Sbjct: 9 PTQEEAIAQLDQYFQSPEEEDVDTEGVLQVLHKVELKTEDSEYLQARTANIIDKIPEIDA 68
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT-RHQIVINEAVDLAKRF 267
++ V WK +M G++ EL+IL LA+ E+ T ++ INEAV+LAK+F
Sbjct: 69 KLN----EVAAGWKTKRM----GKV-ELTILRLALFEMAYDDTIPEKVSINEAVELAKKF 119
Query: 268 CDGAAPRIINGCLRTFV 284
+P +NG L F+
Sbjct: 120 GGNDSPAFVNGILARFI 136
>gi|225420435|ref|ZP_03762738.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
DSM 15981]
gi|225040922|gb|EEG51168.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
DSM 15981]
Length = 197
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT- 251
R+ K + ++DK + ID + + W+ + G++ EL+IL LA+ E+ +
Sbjct: 62 RYLEKRVAGIMDK----IPEIDGQINEVAAGWRTKR-MGKV-ELTILRLALFEMKYDDSI 115
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEA 295
++ INEAV+LAK+F +P +NG L F G EA
Sbjct: 116 PEKVAINEAVELAKKFGGDESPSFVNGILAKFAGKAAGRTGGEA 159
>gi|406577087|ref|ZP_11052706.1| transcription antitermination protein NusB [Streptococcus sp.
GMD6S]
gi|404460349|gb|EKA06618.1| transcription antitermination protein NusB [Streptococcus sp.
GMD6S]
Length = 140
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLTELVSGVQAKKEELDKQITQHLKTGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA+DLAK F D + R ING L FV
Sbjct: 109 VNEAIDLAKDFSDQKSARFINGLLSQFV 136
>gi|422821926|ref|ZP_16870119.1| N utilization substance protein B [Streptococcus sanguinis SK353]
gi|422845968|ref|ZP_16892651.1| N utilization substance protein B [Streptococcus sanguinis SK72]
gi|324990231|gb|EGC22169.1| N utilization substance protein B [Streptococcus sanguinis SK353]
gi|325688019|gb|EGD30038.1| N utilization substance protein B [Streptococcus sanguinis SK72]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|406926839|gb|EKD62967.1| hypothetical protein ACD_52C00003G0004 [uncultured bacterium]
Length = 120
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVV---PPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
FT++ + A V + IDK + P W + K+++ ++L+IL LA+ EI
Sbjct: 24 FTKQAMSATVRNIFNNKDSIDKQIMAAAPAWPLEKLNK-----IDLAILRLAVYEIGKEV 78
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++VI+EAV+LAK + ++P ING L T +++
Sbjct: 79 APSKVVIDEAVELAKEYGGESSPSFINGVLGTILKS 114
>gi|422860844|ref|ZP_16907488.1| N utilization substance protein B [Streptococcus sanguinis SK330]
gi|422881563|ref|ZP_16928019.1| N utilization substance protein B [Streptococcus sanguinis SK355]
gi|327469227|gb|EGF14699.1| N utilization substance protein B [Streptococcus sanguinis SK330]
gi|332363805|gb|EGJ41584.1| N utilization substance protein B [Streptococcus sanguinis SK355]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|150390264|ref|YP_001320313.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149950126|gb|ABR48654.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
Length = 129
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID + K WK+++ A ++L+IL LA++E+ +G +++ +NEA++L K++
Sbjct: 49 IDTYIKQYSKGWKLNRIAN--VDLAILRLALTEMLHMGEIPYRVSVNEAIELGKKYSAEE 106
Query: 272 APRIINGCLRTFVRNLEGTAN 292
+ ING L F+ EG N
Sbjct: 107 SASFINGILGRFIEEEEGIKN 127
>gi|443323337|ref|ZP_21052344.1| NusB antitermination factor [Gloeocapsa sp. PCC 73106]
gi|442786901|gb|ELR96627.1| NusB antitermination factor [Gloeocapsa sp. PCC 73106]
Length = 206
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 222 KVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
++ K+DQ IL +A++EI + H++ INEAV++AKR+ D R ING LR
Sbjct: 148 RIAKLDQ--------DILKIAVAEILYLDIPHKVAINEAVEIAKRYSDPEGYRFINGVLR 199
>gi|422852336|ref|ZP_16899006.1| N utilization substance protein B [Streptococcus sanguinis SK150]
gi|325693662|gb|EGD35581.1| N utilization substance protein B [Streptococcus sanguinis SK150]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|422878059|ref|ZP_16924529.1| N utilization substance protein B [Streptococcus sanguinis SK1056]
gi|332357987|gb|EGJ35820.1| N utilization substance protein B [Streptococcus sanguinis SK1056]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|401682024|ref|ZP_10813919.1| transcription antitermination factor NusB [Streptococcus sp. AS14]
gi|422871610|ref|ZP_16918103.1| N utilization substance protein B [Streptococcus sanguinis SK1087]
gi|328945778|gb|EGG39929.1| N utilization substance protein B [Streptococcus sanguinis SK1087]
gi|400185330|gb|EJO19560.1| transcription antitermination factor NusB [Streptococcus sp. AS14]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|39932003|sp|Q9CHN4.2|NUSB_LACLA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
Length = 192
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
+ +L+ V+DK + I K + W ++ ++E +IL ++ EI T
Sbjct: 105 EYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRL-----TLVEQAILQVSSYEILYTETP 159
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+ +NEAV+L+K F D + R ING L F++
Sbjct: 160 DVVAVNEAVELSKDFSDEKSSRFINGVLTNFLK 192
>gi|399053803|ref|ZP_10742602.1| transcription antitermination factor NusB [Brevibacillus sp. CF112]
gi|433542479|ref|ZP_20498906.1| N utilization substance protein B [Brevibacillus agri BAB-2500]
gi|398048580|gb|EJL41052.1| transcription antitermination factor NusB [Brevibacillus sp. CF112]
gi|432186290|gb|ELK43764.1| N utilization substance protein B [Brevibacillus agri BAB-2500]
Length = 134
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGT 251
++ R LL V+ A++ ID + + W++++ A ++ +IL LA EI T
Sbjct: 40 QYLRYLLDGVL----ANLAEIDAEIKKYLRGWQLERIAN--VDRAILRLAFYEIMFEADT 93
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
++V+NEA+++AK F D A+ R ING L +F++
Sbjct: 94 PDKVVMNEAIEIAKLFSDEASHRYINGVLASFLQ 127
>gi|421880328|ref|ZP_16311720.1| Transcription termination protein NusB [Helicobacter bizzozeronii
CCUG 35545]
gi|375317386|emb|CCF79716.1| Transcription termination protein NusB [Helicobacter bizzozeronii
CCUG 35545]
Length = 75
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
+D + P+ K W + + +E +IL L EI T+ IVINEA++LAK + + A
Sbjct: 1 MDNTLKPLLKDWDLKRMGS--MERAILRLGAYEILHTSTKSPIVINEAIELAKNYGEEQA 58
Query: 273 PRIINGCL 280
P++IN L
Sbjct: 59 PKLINAVL 66
>gi|421874470|ref|ZP_16306074.1| transcription antitermination factor NusB [Brevibacillus
laterosporus GI-9]
gi|372456514|emb|CCF15623.1| transcription antitermination factor NusB [Brevibacillus
laterosporus GI-9]
Length = 136
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQI 255
K L+ +V+ +++ ID+ V + W++D+ A ++ +IL LA E+ G ++
Sbjct: 40 KYLLYLVEGALNNLNSIDEAVKQYLRGWQLDRIAN--VDRAILRLAFFELMFEEGVPARV 97
Query: 256 VINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
++NEA++LAK F D + R +NG L +++
Sbjct: 98 IVNEAIELAKLFSDDQSYRFVNGVLSNYLQ 127
>gi|422859180|ref|ZP_16905830.1| N utilization substance protein B [Streptococcus sanguinis SK1057]
gi|327458960|gb|EGF05308.1| N utilization substance protein B [Streptococcus sanguinis SK1057]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|422824775|ref|ZP_16872960.1| N utilization substance protein B [Streptococcus sanguinis SK405]
gi|422827044|ref|ZP_16875223.1| N utilization substance protein B [Streptococcus sanguinis SK678]
gi|422856871|ref|ZP_16903525.1| N utilization substance protein B [Streptococcus sanguinis SK1]
gi|422864379|ref|ZP_16911004.1| N utilization substance protein B [Streptococcus sanguinis SK1058]
gi|324992055|gb|EGC23977.1| N utilization substance protein B [Streptococcus sanguinis SK405]
gi|324994148|gb|EGC26062.1| N utilization substance protein B [Streptococcus sanguinis SK678]
gi|327459357|gb|EGF05703.1| N utilization substance protein B [Streptococcus sanguinis SK1]
gi|327490573|gb|EGF22354.1| N utilization substance protein B [Streptococcus sanguinis SK1058]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSKFI 141
>gi|32265536|ref|NP_859568.1| transcription antitermination protein NusB [Helicobacter hepaticus
ATCC 51449]
gi|39931804|sp|Q7VK55.1|NUSB_HELHP RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|32261584|gb|AAP76634.1| transcription termination factor NusB [Helicobacter hepaticus ATCC
51449]
Length = 157
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F LL V++ H+ ID + P K W+ + G +E ++L L EI T
Sbjct: 45 FAFSLLQGVIE----HLSQIDLCIAPYLKEWEFSRLGG--MERAMLRLGAFEILYTETDT 98
Query: 254 QIVINEAVDLAKRF-CDGAAPRIINGCL 280
++INEAV+L K + + APR ING L
Sbjct: 99 PVIINEAVELGKMYGGEDNAPRFINGVL 126
>gi|170077553|ref|YP_001734191.1| transcription antitermination protein NusB [Synechococcus sp. PCC
7002]
gi|254772663|sp|B1XIZ3.1|NUSB_SYNP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|169885222|gb|ACA98935.1| transcription antitermination factor NusB [Synechococcus sp. PCC
7002]
Length = 213
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
L+ IL +A++EI + T +++ INEAV+LAKR+ D R ING LR
Sbjct: 153 LDRDILRIAVAEILFLETPYKVAINEAVELAKRYSDEDGHRFINGVLR 200
>gi|422883317|ref|ZP_16929766.1| N utilization substance protein B [Streptococcus sanguinis SK49]
gi|332363255|gb|EGJ41040.1| N utilization substance protein B [Streptococcus sanguinis SK49]
Length = 143
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|418966300|ref|ZP_13518044.1| transcription antitermination factor NusB [Streptococcus
constellatus subsp. constellatus SK53]
gi|383340354|gb|EID18659.1| transcription antitermination factor NusB [Streptococcus
constellatus subsp. constellatus SK53]
Length = 141
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
DK+ + + W +++ ++E +IL L + E+T T + INEA++L+K+F D +
Sbjct: 71 DKLSQYLKEGWTLERLT--LIEKNILRLGLFEMTEFNTPQLVAINEAIELSKKFSDEKSS 128
Query: 274 RIINGCLRTFV 284
+ ING L FV
Sbjct: 129 KFINGILSKFV 139
>gi|298490714|ref|YP_003720891.1| NusB antitermination factor ['Nostoc azollae' 0708]
gi|298232632|gb|ADI63768.1| NusB antitermination factor ['Nostoc azollae' 0708]
Length = 213
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 211 HIIDKVVPPI---WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF 267
++ID+++ W+V ++ Q ++ IL +A +E+ +G I INEAV+LAKR+
Sbjct: 136 NVIDQIISDALVDWQVTRLAQ-----IDRDILQIAAAEMKFMGVPASIAINEAVELAKRY 190
Query: 268 CDGAAPRIINGCLR 281
R ING LR
Sbjct: 191 SGDEGHRFINGVLR 204
>gi|422853080|ref|ZP_16899744.1| N utilization substance protein B [Streptococcus sanguinis SK160]
gi|325697632|gb|EGD39517.1| N utilization substance protein B [Streptococcus sanguinis SK160]
Length = 143
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSKFI 141
>gi|422849368|ref|ZP_16896044.1| N utilization substance protein B [Streptococcus sanguinis SK115]
gi|325690389|gb|EGD32393.1| N utilization substance protein B [Streptococcus sanguinis SK115]
Length = 143
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 274
K+ + K W +D+ ++E +IL L + EIT T + +NEA++L+K+F D + +
Sbjct: 74 KIAQHLKKGWTVDRLT--LVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131
Query: 275 IINGCLRTFV 284
ING L F+
Sbjct: 132 FINGILSQFI 141
>gi|254414272|ref|ZP_05028039.1| transcription antitermination factor NusB, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196178947|gb|EDX73944.1| transcription antitermination factor NusB, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 213
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ K W++++ ++ IL +A++E+ +G ++ INEA++LAKR+ D
Sbjct: 130 IDEILVKSLKDWQINRLPR--IDRDILRIAVAEMAFLGIPDRVAINEAIELAKRYSDQEG 187
Query: 273 PRIINGCLR 281
R +NG LR
Sbjct: 188 HRFVNGVLR 196
>gi|423483775|ref|ZP_17460465.1| transcription antitermination factor NusB [Bacillus cereus
BAG6X1-2]
gi|401141326|gb|EJQ48881.1| transcription antitermination factor NusB [Bacillus cereus
BAG6X1-2]
Length = 130
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V VD +A ID+ + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVDNKEA----IDEAIRQNLKKWKLERIS--IVDRSILRVAVCEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|182683397|ref|YP_001835144.1| transcription antitermination protein NusB [Streptococcus
pneumoniae CGSP14]
gi|182628731|gb|ACB89679.1| transcription antitermination protein NusB [Streptococcus
pneumoniae CGSP14]
Length = 146
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 57 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 114
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
INEA++LAK F D + R ING L FV
Sbjct: 115 INEAIELAKDFSDQKSARFINGLLSQFV 142
>gi|309799755|ref|ZP_07693969.1| transcription antitermination factor NusB [Streptococcus infantis
SK1302]
gi|308116621|gb|EFO54083.1| transcription antitermination factor NusB [Streptococcus infantis
SK1302]
Length = 140
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
LV +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLVELVSGVQAKKDDLDKQITQHLKTGWTINRLT--LVEKNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKSFSDQKSARFINGLLSQFV 136
>gi|223986295|ref|ZP_03636307.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
12042]
gi|223961734|gb|EEF66234.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
12042]
Length = 115
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F+R L++ +D + ++ I++ + K W ++ +LE +IL +A SE+
Sbjct: 32 FSRILILDTLDNENRYIQYINETL----KDWSFERLG--VLEQAILLMACSELDHQTASA 85
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
I+I+EAV LAK +CD A R+ING L
Sbjct: 86 AIIIDEAVRLAKDYCDDEAYRLINGVL 112
>gi|434407464|ref|YP_007150349.1| NusB antitermination factor [Cylindrospermum stagnale PCC 7417]
gi|428261719|gb|AFZ27669.1| NusB antitermination factor [Cylindrospermum stagnale PCC 7417]
Length = 213
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 211 HIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 270
H+ID+++ W++ + A ++ IL +A++E+ + I INEAV+LAKR+
Sbjct: 136 HLIDQLISDALIDWQVTRLAQ--IDRDILQIAVAEMKFMQVPDSIAINEAVELAKRYSGD 193
Query: 271 AAPRIINGCLR 281
R ING LR
Sbjct: 194 EGHRFINGVLR 204
>gi|419529640|ref|ZP_14069173.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA40028]
gi|379575499|gb|EHZ40431.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA40028]
Length = 120
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + KV W +++ ++E ++L L + EIT T +
Sbjct: 31 FLIDLVSGIQAKKEELDKQITQHLKVGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 88
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 89 VNEAIELAKDFSDQKSARFINGLLSQFV 116
>gi|319939911|ref|ZP_08014266.1| transcription antitermination protein NusB [Streptococcus anginosus
1_2_62CV]
gi|319810922|gb|EFW07241.1| transcription antitermination protein NusB [Streptococcus anginosus
1_2_62CV]
Length = 141
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
DK+ + + W +++ ++E +IL L + E+T T + INEA++L+K+F D +
Sbjct: 71 DKLSQYLKEGWTLERLT--LIEKNILRLGLFEMTEFDTPQLVAINEAIELSKKFSDEKSS 128
Query: 274 RIINGCLRTFV 284
+ ING L FV
Sbjct: 129 KFINGILSKFV 139
>gi|229916254|ref|YP_002884900.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
gi|259514838|sp|C4L3F7.1|NUSB_EXISA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|229467683|gb|ACQ69455.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
Length = 128
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRF 267
H+ ID ++ K W++D+ +E +IL +A E+ V T + INEAV+LAK F
Sbjct: 51 HIEDIDALLVENLKNWRLDRLGN--VERTILRMATFELLYVETIPENVTINEAVELAKSF 108
Query: 268 CDGAAPRIINGCLRTFVR 285
D A +++NG L ++
Sbjct: 109 GDEEAGKLVNGVLGNIIK 126
>gi|113474580|ref|YP_720641.1| transcription antitermination protein NusB [Trichodesmium
erythraeum IMS101]
gi|119390846|sp|Q118A6.1|NUSB_TRIEI RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|110165628|gb|ABG50168.1| NusB antitermination factor [Trichodesmium erythraeum IMS101]
Length = 207
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 9/97 (9%)
Query: 191 LLRFTRKLLV-----AVVDKWDAHVHIIDKVVPPIWKVWKMDQ-PAGRILELSILHLAMS 244
+L+ T +L V V+ K + + +DK++ W++++ P ++L IL +A++
Sbjct: 105 MLQLTNQLEVRSYAMEVLTKVNGNRKEVDKLLQESIVDWQIERLPR---IDLDILRIAVA 161
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
E+ +G + Q+ I+EAV+LAKR+ + ING LR
Sbjct: 162 EMMFIGIQKQVAISEAVELAKRYSGEDGYKFINGVLR 198
>gi|414156136|ref|ZP_11412445.1| transcription antitermination factor NusB [Streptococcus sp. F0442]
gi|410872345|gb|EKS20289.1| transcription antitermination factor NusB [Streptococcus sp. F0442]
Length = 143
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V D I + + W V ++ ++E +IL L + EIT T
Sbjct: 55 FLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERL-----TLVEKNILRLGIYEITEFDTPQ 109
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEAV+LAK F D + R +NG L FV
Sbjct: 110 IVAVNEAVELAKSFSDETSSRFVNGVLSQFV 140
>gi|315222311|ref|ZP_07864217.1| transcription antitermination factor NusB [Streptococcus anginosus
F0211]
gi|343526642|ref|ZP_08763591.1| transcription antitermination factor NusB [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|418964036|ref|ZP_13515859.1| transcription antitermination factor NusB [Streptococcus anginosus
subsp. whileyi CCUG 39159]
gi|315188644|gb|EFU22353.1| transcription antitermination factor NusB [Streptococcus anginosus
F0211]
gi|343393903|gb|EGV06454.1| transcription antitermination factor NusB [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|383341955|gb|EID20197.1| transcription antitermination factor NusB [Streptococcus anginosus
subsp. whileyi CCUG 39159]
Length = 141
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
DK+ + + W +++ ++E +IL L + E+T T + INEA++L+K+F D +
Sbjct: 71 DKLSQYLKEGWTLERLT--LIEKNILRLGLFEMTEFDTPQLVAINEAIELSKKFSDEKSS 128
Query: 274 RIINGCLRTFV 284
+ ING L FV
Sbjct: 129 KFINGILSKFV 139
>gi|418088201|ref|ZP_12725366.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47033]
gi|418201715|ref|ZP_12838147.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA52306]
gi|421284570|ref|ZP_15735348.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA60190]
gi|421293174|ref|ZP_15743901.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA56113]
gi|421300141|ref|ZP_15750813.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19998]
gi|421306639|ref|ZP_15757285.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA60132]
gi|353755878|gb|EHD36481.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47033]
gi|353869191|gb|EHE49074.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA52306]
gi|395888490|gb|EJG99501.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA60190]
gi|395896228|gb|EJH07195.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA56113]
gi|395901238|gb|EJH12175.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19998]
gi|395908602|gb|EJH19479.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA60132]
Length = 120
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + KV W +++ ++E ++L L + EIT T +
Sbjct: 31 FLIDLVSGVQAKKEELDKQITQHLKVGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 88
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 89 VNEAIELAKDFSDQKSARFINGLLSQFV 116
>gi|417939432|ref|ZP_12582724.1| transcription antitermination factor NusB [Streptococcus infantis
SK970]
gi|343390150|gb|EGV02733.1| transcription antitermination factor NusB [Streptococcus infantis
SK970]
Length = 140
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAQKEELDKQITQHLKAGWTIERLT--LVEKNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKSFSDQKSARFINGLLSQFV 136
>gi|335030792|ref|ZP_08524270.1| transcription antitermination factor NusB [Streptococcus anginosus
SK52 = DSM 20563]
gi|333771043|gb|EGL48009.1| transcription antitermination factor NusB [Streptococcus anginosus
SK52 = DSM 20563]
Length = 141
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
DK+ + + W +++ ++E +IL L + E+T T + INEA++L+K+F D +
Sbjct: 71 DKLSQYLKEGWTLERLT--LIEKNILRLGLFEMTEFDTPQLVAINEAIELSKKFSDEKSS 128
Query: 274 RIINGCLRTFV 284
+ ING L FV
Sbjct: 129 KFINGILSKFV 139
>gi|162147540|ref|YP_001602001.1| N utilization substance protein B-like protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545645|ref|YP_002277874.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
5]
gi|161786117|emb|CAP55699.1| N utilization substance protein B homolog [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533322|gb|ACI53259.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
5]
Length = 183
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDG 270
+I +V+PP W V ++D P R L L A +E+ G +++INE +D+A F G
Sbjct: 92 LIVEVLPPSWPVGRLD-PVLRAL----LRAAGAELAATGGVPTRVIINEYLDIAHGFFSG 146
Query: 271 AAPRIINGCLRTFVRNL 287
P+++NG L T R L
Sbjct: 147 DEPKMVNGVLDTLARRL 163
>gi|303255410|ref|ZP_07341476.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS455]
gi|303259505|ref|ZP_07345482.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP-BS293]
gi|303262368|ref|ZP_07348311.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP14-BS292]
gi|303264786|ref|ZP_07350703.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS397]
gi|303266625|ref|ZP_07352510.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS457]
gi|303268858|ref|ZP_07354645.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS458]
gi|387758753|ref|YP_006065731.1| N utilization substance protein B [Streptococcus pneumoniae INV200]
gi|418138766|ref|ZP_12775598.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13338]
gi|418179809|ref|ZP_12816384.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41688]
gi|418199131|ref|ZP_12835580.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47976]
gi|421295696|ref|ZP_15746411.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA58581]
gi|301801342|emb|CBW34025.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae INV200]
gi|302597655|gb|EFL64735.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS455]
gi|302636467|gb|EFL66959.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP14-BS292]
gi|302639439|gb|EFL69897.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP-BS293]
gi|302641639|gb|EFL71999.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS458]
gi|302643869|gb|EFL74131.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS457]
gi|302645653|gb|EFL75883.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS397]
gi|353847231|gb|EHE27258.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41688]
gi|353866719|gb|EHE46615.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47976]
gi|353906473|gb|EHE81877.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13338]
gi|395897765|gb|EJH08724.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA58581]
Length = 140
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
INEA++LAK F D + R ING L FV
Sbjct: 109 INEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|306825791|ref|ZP_07459130.1| transcription antitermination factor NusB [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|414157974|ref|ZP_11414268.1| transcription antitermination factor NusB [Streptococcus sp. F0441]
gi|304432152|gb|EFM35129.1| transcription antitermination factor NusB [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|410870519|gb|EKS18476.1| transcription antitermination factor NusB [Streptococcus sp. F0441]
Length = 140
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLTGLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|312868252|ref|ZP_07728452.1| transcription antitermination factor NusB [Streptococcus
parasanguinis F0405]
gi|311095997|gb|EFQ54241.1| transcription antitermination factor NusB [Streptococcus
parasanguinis F0405]
Length = 143
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V D I + + W V ++ ++E +IL L + EIT T
Sbjct: 55 FLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERL-----TLVEKNILRLGIYEITEFDTPQ 109
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEAV+LAK F D + R +NG L FV
Sbjct: 110 IVAVNEAVELAKAFSDETSSRFVNGVLSQFV 140
>gi|322387215|ref|ZP_08060825.1| N utilization substance protein B [Streptococcus infantis ATCC
700779]
gi|419843391|ref|ZP_14366705.1| transcription antitermination factor NusB [Streptococcus infantis
ATCC 700779]
gi|421276871|ref|ZP_15727691.1| transcription antitermination factor NusB [Streptococcus mitis
SPAR10]
gi|321141744|gb|EFX37239.1| N utilization substance protein B [Streptococcus infantis ATCC
700779]
gi|385702857|gb|EIG39993.1| transcription antitermination factor NusB [Streptococcus infantis
ATCC 700779]
gi|395876152|gb|EJG87228.1| transcription antitermination factor NusB [Streptococcus mitis
SPAR10]
Length = 140
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAQKEELDKQITQHLKSGWTIERLT--LVEKNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKSFSDQKSARFINGLLSQFV 136
>gi|114319541|ref|YP_741224.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
gi|119372274|sp|Q0ABQ3.1|NUSB_ALHEH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|114225935|gb|ABI55734.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
Length = 178
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 165 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVW 224
L D EE +EA P+ + L + R LL V A ++ +D+ + P+
Sbjct: 46 LEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVP----ARLNDLDQALEPL---- 97
Query: 225 KMDQPAGRI--LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
+D+P + LE ++L L E++ + T +++INEAV+LAKRF + R ING L
Sbjct: 98 -LDRPLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQSHRYINGVLD 156
Query: 282 TFVRNLEGTAN-IEASKASK 300
R L A IEA + +
Sbjct: 157 KLARGLPLRATEIEADRKRR 176
>gi|421205900|ref|ZP_15662965.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2090008]
gi|421229110|ref|ZP_15685787.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2061376]
gi|421291228|ref|ZP_15741971.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA56348]
gi|395577551|gb|EJG38090.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2090008]
gi|395598095|gb|EJG58300.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2061376]
gi|395895948|gb|EJH06917.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA56348]
Length = 140
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQMVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|421489804|ref|ZP_15937180.1| transcription antitermination factor NusB [Streptococcus anginosus
SK1138]
gi|400374392|gb|EJP27311.1| transcription antitermination factor NusB [Streptococcus anginosus
SK1138]
Length = 141
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
DK+ + + W +++ ++E +IL L + E+T T + INEA++L+K+F D +
Sbjct: 71 DKLSQYLKEGWTLERLT--LVEKNILRLGLFEMTEFDTPQLVAINEAIELSKKFSDEKSS 128
Query: 274 RIINGCLRTFV 284
+ ING L FV
Sbjct: 129 KFINGILSKFV 139
>gi|386284854|ref|ZP_10062073.1| transcription antitermination protein NusB [Sulfurovum sp. AR]
gi|385344257|gb|EIF50974.1| transcription antitermination protein NusB [Sulfurovum sp. AR]
Length = 132
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
++ ++D + K W D G++ E +I+ L EI V T I+INEAV+LAK
Sbjct: 56 NLDMLDAKIKEHLKDWDYD-AIGKV-EKAIMRLGAYEILVAKTDKAIIINEAVELAKELA 113
Query: 269 DGAAPRIINGCL 280
D +P+ ING L
Sbjct: 114 DEKSPQFINGVL 125
>gi|417918356|ref|ZP_12561908.1| transcription antitermination factor NusB [Streptococcus
parasanguinis SK236]
gi|342828811|gb|EGU63177.1| transcription antitermination factor NusB [Streptococcus
parasanguinis SK236]
Length = 143
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V D I + + W V ++ ++E +IL L + EIT T
Sbjct: 55 FLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERL-----TLVEKNILRLGIYEITEFDTPQ 109
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEAV+LAK F D + R +NG L FV
Sbjct: 110 IVAVNEAVELAKAFSDETSSRFVNGVLSQFV 140
>gi|239637666|ref|ZP_04678638.1| transcription antitermination factor NusB [Staphylococcus warneri
L37603]
gi|239596884|gb|EEQ79409.1| transcription antitermination factor NusB [Staphylococcus warneri
L37603]
Length = 128
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMS 244
Y L F L+ V D H ++D+ + P K W +++ RI IL +A
Sbjct: 37 YPDLDFDFINWLVTGVKD----HEPVLDEKIKPYLKDWSLERLLKTDRI----ILRMATF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
EI T ++VINEAV+LAK+F D + ING L
Sbjct: 89 EILHSDTPSKVVINEAVELAKQFSDDDHYKFINGVL 124
>gi|419767239|ref|ZP_14293397.1| transcription antitermination factor NusB [Streptococcus mitis
SK579]
gi|383353325|gb|EID30947.1| transcription antitermination factor NusB [Streptococcus mitis
SK579]
Length = 141
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + D I++ + W V ++ ++E ++L L + EIT T
Sbjct: 51 FLLNLVSGVQAQKDELDKQINQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQ 105
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEA++LAK F D + R ING L FV
Sbjct: 106 LVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|289422315|ref|ZP_06424165.1| transcription antitermination factor NusB [Peptostreptococcus
anaerobius 653-L]
gi|289157260|gb|EFD05875.1| transcription antitermination factor NusB [Peptostreptococcus
anaerobius 653-L]
Length = 164
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 175 EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRIL 234
E ++L P L+ L+ +V +DA+ ID + + W +D I+
Sbjct: 60 ELDLLEMPGDLL-------LDASYLMDMVAAFDANREEIDSNINKFARKWTIDTLP--IV 110
Query: 235 ELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+++IL +A++EI ++ I +EAV+LAK++CD A + ING L + V +
Sbjct: 111 DVAILRMAITEILYMIDIPDGITCDEAVNLAKKYCDDGAYKYINGILGSVVND 163
>gi|224373796|ref|YP_002608168.1| transcription antitermination factor NusB [Nautilia profundicola
AmH]
gi|223589865|gb|ACM93601.1| transcription antitermination factor NusB [Nautilia profundicola
AmH]
Length = 136
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 16/92 (17%)
Query: 194 FTRKLLVAV---VDKWDAHV--HIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV 248
F +KLL V +DK D + H+ID W ++D+ ++ IL + + EI
Sbjct: 45 FAKKLLKGVSEHIDKIDEIIKNHLID------WDFERLDK-----VDKQILRVGIYEILY 93
Query: 249 VGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
T +QIVI+EAV +AK F + A ING L
Sbjct: 94 TDTPYQIVIDEAVKIAKNFSEDKAKSFINGIL 125
>gi|326790845|ref|YP_004308666.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
gi|326541609|gb|ADZ83468.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
Length = 139
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 188 SKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT 247
+K +++F V + HV ID ++ K W M + A ++LSIL LA+ E+
Sbjct: 44 NKAIVKFIEDTYFGVYE----HVKEIDALIAGAAKNWSMARIAK--VDLSILRLAIFELQ 97
Query: 248 VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
++ +NEAV++AK + +P+ ING L
Sbjct: 98 YTDVPVKVAVNEAVEIAKIYSTDKSPKFINGVL 130
>gi|339010266|ref|ZP_08642836.1| putative N utilization substance protein B [Brevibacillus
laterosporus LMG 15441]
gi|338772421|gb|EGP31954.1| putative N utilization substance protein B [Brevibacillus
laterosporus LMG 15441]
Length = 136
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQI 255
K L+ +V+ ++ ID+ V + W++D+ A ++ +IL LA E+ G ++
Sbjct: 40 KYLLYLVEGALNNLDSIDEAVKQYLRGWQLDRIAN--VDRAILRLAFFELMFEDGVPARV 97
Query: 256 VINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++NEA++LAK F D + R +NG L ++++ E
Sbjct: 98 IVNEAIELAKLFSDDQSYRFVNGVLSNYLQSNE 130
>gi|383322829|ref|YP_005383682.1| N utilization substance protein B [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325998|ref|YP_005386851.1| N utilization substance protein B [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491882|ref|YP_005409558.1| N utilization substance protein B [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437150|ref|YP_005651874.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
gi|22096363|sp|P74395.2|NUSB_SYNY3 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|339274182|dbj|BAK50669.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
gi|359272148|dbj|BAL29667.1| N utilization substance protein B [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275318|dbj|BAL32836.1| N utilization substance protein B [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278488|dbj|BAL36005.1| N utilization substance protein B [Synechocystis sp. PCC 6803
substr. PCC-P]
Length = 221
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + W++ + A ++ IL LA++E+ +G ++ INEAV+LAKR+
Sbjct: 137 IDEQLQEAMVDWQLSRLAK--IDQDILRLAIAELDYLGVPQKVAINEAVELAKRYSGQDG 194
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 195 HRFINGVLR 203
>gi|15902434|ref|NP_357984.1| transcription antitermination protein NusB [Streptococcus
pneumoniae R6]
gi|183603887|ref|ZP_02722699.2| transcription antitermination factor NusB [Streptococcus pneumoniae
MLV-016]
gi|15457952|gb|AAK99194.1| Transcription termination protein [Streptococcus pneumoniae R6]
gi|183577498|gb|EDT98026.1| transcription antitermination factor NusB [Streptococcus pneumoniae
MLV-016]
Length = 146
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 57 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 114
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 115 VNEAIELAKDFSDQKSARFINGLLSQFV 142
>gi|383938370|ref|ZP_09991583.1| transcription antitermination factor NusB [Streptococcus
pseudopneumoniae SK674]
gi|418969103|ref|ZP_13520254.1| transcription antitermination factor NusB [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383352423|gb|EID30126.1| transcription antitermination factor NusB [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383714722|gb|EID70715.1| transcription antitermination factor NusB [Streptococcus
pseudopneumoniae SK674]
Length = 141
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLLNLVSGIQAQKEELDKQINQHLKSGWTVERLT--LVEKNLLRLGIFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|228992930|ref|ZP_04152854.1| N utilization substance protein B [Bacillus pseudomycoides DSM
12442]
gi|228998974|ref|ZP_04158556.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
gi|229006513|ref|ZP_04164157.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
gi|228754739|gb|EEM04140.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
gi|228760591|gb|EEM09555.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
gi|228766787|gb|EEM15426.1| N utilization substance protein B [Bacillus pseudomycoides DSM
12442]
Length = 120
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V V+ H ID+ + K WK+++ + I++ SIL LA+ E+ +
Sbjct: 32 FLESLVVGCVE----HKEAIDEAIRQNLKKWKLERIS--IVDRSILRLAVYEMKYMEEIP 85
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 86 HNVTINEAIEIAKTFGDEESRRFINGVL 113
>gi|307708254|ref|ZP_07644721.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
12261]
gi|307615700|gb|EFN94906.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
12261]
Length = 141
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + D I++ + W V ++ ++E ++L L + EIT T
Sbjct: 51 FLLNLVSGVQAQKDELDKQINQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQ 105
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEA++LAK F D + R ING L FV
Sbjct: 106 LVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|418159072|ref|ZP_12795776.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17227]
gi|419520402|ref|ZP_14060000.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA05245]
gi|353826067|gb|EHE06230.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17227]
gi|379541234|gb|EHZ06403.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA05245]
Length = 141
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSDVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|307710564|ref|ZP_07646999.1| transcription antitermination factor NusB [Streptococcus mitis
SK564]
gi|307618672|gb|EFN97813.1| transcription antitermination factor NusB [Streptococcus mitis
SK564]
Length = 141
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLLNLVSGIQAQKEELDKQINQHLKSGWTVERLT--LVEKNLLRLGIFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|149194728|ref|ZP_01871823.1| N utilization substance protein B [Caminibacter mediatlanticus
TB-2]
gi|149135151|gb|EDM23632.1| N utilization substance protein B [Caminibacter mediatlanticus
TB-2]
Length = 136
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F +KLL V++ H++ ID+++ W D+ ++ IL + EI T +
Sbjct: 45 FAKKLLNGVLE----HINEIDEIIKNHLIDWSFDRLDK--VDKQILRTGIYEIKYTDTPY 98
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
QIVI+EAV +AK F + + ING L
Sbjct: 99 QIVIDEAVKIAKNFSEDKSKNFINGIL 125
>gi|392972195|ref|ZP_10337587.1| transcription antitermination factor NusB [Staphylococcus equorum
subsp. equorum Mu2]
gi|403046480|ref|ZP_10901949.1| transcription antitermination protein NusB [Staphylococcus sp.
OJ82]
gi|392509908|emb|CCI60889.1| transcription antitermination factor NusB [Staphylococcus equorum
subsp. equorum Mu2]
gi|402763176|gb|EJX17269.1| transcription antitermination protein NusB [Staphylococcus sp.
OJ82]
Length = 128
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGT 251
F L+ V D H I+D+ + P K W +D+ RI IL ++ E+ T
Sbjct: 44 FINWLVTGVKD----HETILDEKIQPHLKDWTLDRLLKTDRI----ILRMSTFELLHSST 95
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+++INEAV+LAK+F D + ING L
Sbjct: 96 PQKVIINEAVELAKQFSDDDHYKFINGVL 124
>gi|342163204|ref|YP_004767843.1| transcription antitermination protein NusB [Streptococcus
pseudopneumoniae IS7493]
gi|341933086|gb|AEL09983.1| transcription antitermination protein NusB [Streptococcus
pseudopneumoniae IS7493]
Length = 141
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
I++ + W V ++ ++E ++L L + EIT T + +NEA++LAK F D +
Sbjct: 70 INQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAKNFSDQKS 124
Query: 273 PRIINGCLRTFV 284
R ING L FV
Sbjct: 125 ARFINGLLSQFV 136
>gi|411118082|ref|ZP_11390463.1| NusB antitermination factor [Oscillatoriales cyanobacterium JSC-12]
gi|410711806|gb|EKQ69312.1| NusB antitermination factor [Oscillatoriales cyanobacterium JSC-12]
Length = 213
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ W++ + A +++ IL +A++E+ +G ++ +NEAV+LAKR+
Sbjct: 130 IDQLLARALVDWQLSRLA--VIDRDILRIAVTEMLYLGVPDRVAVNEAVELAKRYSGEDG 187
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 188 YRFINGVLR 196
>gi|418978013|ref|ZP_13525817.1| transcription antitermination factor NusB [Streptococcus mitis
SK575]
gi|383348000|gb|EID25960.1| transcription antitermination factor NusB [Streptococcus mitis
SK575]
Length = 141
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + D I++ + W V ++ ++E ++L L + EIT T
Sbjct: 51 FLLNLVSGVQAQKDELDKQINQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQ 105
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEA++LAK F D + R ING L FV
Sbjct: 106 LVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|406933453|gb|EKD68104.1| hypothetical protein ACD_48C00077G0009 [uncultured bacterium]
Length = 101
Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH-QIVINEAVDLAKRF 267
H+ ID + W +D+ A ++L+IL LA+ EIT+ ++VI+EA++LAK F
Sbjct: 24 HLSTIDARITTCAPEWPVDKIAK--IDLAILRLAIYEITITKEAPVKVVIDEAIELAKSF 81
Query: 268 CDGAAPRIINGCLRTFVR 285
+ +P+ ING L T ++
Sbjct: 82 GNSNSPKFINGVLGTIIQ 99
>gi|417847270|ref|ZP_12493238.1| transcription antitermination factor NusB [Streptococcus mitis
SK1073]
gi|339456918|gb|EGP69499.1| transcription antitermination factor NusB [Streptococcus mitis
SK1073]
Length = 141
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + D I++ + W V ++ ++E ++L L + EIT T
Sbjct: 51 FLLNLVSGVQAQKDELDKQINQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQ 105
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEA++LAK F D + R ING L FV
Sbjct: 106 LVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|15672676|ref|NP_266850.1| hypothetical protein L92686 [Lactococcus lactis subsp. lactis
Il1403]
gi|12723603|gb|AAK04792.1|AE006302_10 transcription termination protein NusB [Lactococcus lactis subsp.
lactis Il1403]
Length = 323
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
+L+ V+DK + I K + W ++ ++E +IL ++ EI T +
Sbjct: 240 QLVDGVLDKKEDLEANISKYLTKTWSFSRL-----TLVEQAILQVSSYEILYTETPDVVA 294
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+NEAV+L+K F D + R ING L F++
Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVLTNFLK 323
>gi|429221219|ref|YP_007182863.1| transcription antitermination factor NusB [Deinococcus
peraridilitoris DSM 19664]
gi|429132082|gb|AFZ69097.1| transcription antitermination factor NusB [Deinococcus
peraridilitoris DSM 19664]
Length = 170
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 126 NSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRS-DEEESAIEAEVLSAPPK 184
NS R EF L E S G T +T++ A+ +R D+ +++ E L
Sbjct: 10 NSSRRASREFAFRVLFE----SAQGQSTTQDTLQRAEGAMRGGDDAYASLSPEALD---- 61
Query: 185 LVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMS 244
F R L V+ ++ H +D ++ + W +Q A +L++L LA S
Sbjct: 62 ---------FARSL----VNGYNDHRDEVDGLLRRTIQGWSFNQMA--QTDLNVLRLATS 106
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
E+ VI AV +A++F + R +NG L + VR L
Sbjct: 107 ELLYGNQSAPPVIESAVRIARKFGGDESGRFVNGVLASLVRAL 149
>gi|149008214|ref|ZP_01831709.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP18-BS74]
gi|307126646|ref|YP_003878677.1| transcription antitermination factor NusB [Streptococcus pneumoniae
670-6B]
gi|417676211|ref|ZP_12325624.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17545]
gi|418095536|ref|ZP_12732652.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA16531]
gi|418111780|ref|ZP_12748785.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41538]
gi|418131854|ref|ZP_12768730.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11304]
gi|418154484|ref|ZP_12791215.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA16242]
gi|418224886|ref|ZP_12851515.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP112]
gi|419466057|ref|ZP_14005943.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA05248]
gi|419516144|ref|ZP_14055762.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA02506]
gi|421226620|ref|ZP_15683334.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2072047]
gi|421282645|ref|ZP_15733435.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04216]
gi|147760358|gb|EDK67339.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP18-BS74]
gi|306483708|gb|ADM90577.1| transcription antitermination factor NusB [Streptococcus pneumoniae
670-6B]
gi|332076876|gb|EGI87338.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17545]
gi|353772316|gb|EHD52822.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA16531]
gi|353786837|gb|EHD67248.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41538]
gi|353808646|gb|EHD88912.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11304]
gi|353822776|gb|EHE02951.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA16242]
gi|353882194|gb|EHE62005.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP112]
gi|379547629|gb|EHZ12766.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA05248]
gi|379640147|gb|EIA04686.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA02506]
gi|395597690|gb|EJG57896.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2072047]
gi|395884615|gb|EJG95653.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04216]
Length = 140
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|427711245|ref|YP_007059869.1| NusB antitermination factor [Synechococcus sp. PCC 6312]
gi|427375374|gb|AFY59326.1| NusB antitermination factor [Synechococcus sp. PCC 6312]
Length = 208
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
W++D+ A L+ IL +A++EIT Q+ INEAV+L+KR+ + R ING LR
Sbjct: 142 WQLDRIAQ--LDRYILEIAVAEITYHRLPVQVAINEAVELSKRYSEEGGHRFINGVLR 197
>gi|340776428|ref|ZP_08696371.1| NusB antitermination factor [Acetobacter aceti NBRC 14818]
Length = 202
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 190 LLLRFTRKLLVAVVDKWDAHVH-IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV 248
L R TR+ + HV+ ++ +V+PP W V ++D P R S+ +A++E+
Sbjct: 69 LFTRLTRQ-----AEAGTEHVYELLAEVLPPTWPVKRLD-PVLR----SLFAVAITEMEE 118
Query: 249 VGTRH-QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV 306
G ++INE +D+A F G P+++NG L + T AS +V +E+
Sbjct: 119 KGAPPVNVIINEYLDVAHGFFSGDEPKLVNGVLDAVAKRRAATTQDTASHEEPQVTAEL 177
>gi|385830231|ref|YP_005868044.1| transcription antitermination factor [Lactococcus lactis subsp.
lactis CV56]
gi|418036994|ref|ZP_12675385.1| hypothetical protein LLCRE1631_00192 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|326406239|gb|ADZ63310.1| transcription antitermination factor [Lactococcus lactis subsp.
lactis CV56]
gi|354695139|gb|EHE94761.1| hypothetical protein LLCRE1631_00192 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 323
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
+L+ V+DK + I K + W ++ ++E +IL ++ EI T +
Sbjct: 240 QLVDGVLDKKEDLEANISKYLTKTWSFSRL-----TLVEQAILQVSSYEILYTETPDVVA 294
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+NEAV+L+K F D + R ING L F++
Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVLTNFLK 323
>gi|417934510|ref|ZP_12577830.1| transcription antitermination factor NusB [Streptococcus mitis bv.
2 str. F0392]
gi|340771080|gb|EGR93595.1| transcription antitermination factor NusB [Streptococcus mitis bv.
2 str. F0392]
Length = 140
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLTELVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|281491193|ref|YP_003353173.1| transcription antitermination factor [Lactococcus lactis subsp.
lactis KF147]
gi|281374934|gb|ADA64452.1| Transcription antitermination factor [Lactococcus lactis subsp.
lactis KF147]
Length = 323
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
+L+ V+DK + I K + W ++ ++E +IL ++ EI T +
Sbjct: 240 QLVDGVLDKKEDLEANISKYLAKTWSFSRL-----TLVEQAILQVSSYEILYTETPDVVA 294
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+NEAV+L+K F D + R ING L F++
Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVLTNFLK 323
>gi|225854005|ref|YP_002735517.1| transcription antitermination protein NusB [Streptococcus
pneumoniae JJA]
gi|254772660|sp|C1CCJ6.1|NUSB_STRZJ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|225724174|gb|ACO20027.1| transcription antitermination factor NusB [Streptococcus pneumoniae
JJA]
Length = 140
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|417643192|ref|ZP_12293252.1| transcription antitermination factor NusB [Staphylococcus warneri
VCU121]
gi|445059579|ref|YP_007384983.1| transcription antitermination protein NusB [Staphylococcus warneri
SG1]
gi|330685971|gb|EGG97594.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU121]
gi|443425636|gb|AGC90539.1| transcription antitermination protein NusB [Staphylococcus warneri
SG1]
Length = 128
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMS 244
Y L F L+ V D H ++D+ + P K W +++ RI IL +A
Sbjct: 37 YPDLDFDFINWLVTGVKD----HEPVLDEKIKPYLKDWSLERLLKTDRI----ILRMATF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
EI T ++VINEAV+LAK+F D + ING L
Sbjct: 89 EILHSDTPAKVVINEAVELAKQFSDDDHYKFINGVL 124
>gi|270293308|ref|ZP_06199517.1| N utilization substance protein B [Streptococcus sp. M143]
gi|270278157|gb|EFA24005.1| N utilization substance protein B [Streptococcus sp. M143]
Length = 146
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 57 FLTELVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 114
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 115 VNEAIELAKDFSDQKSARFINGLLSQFV 142
>gi|387880158|ref|YP_006310461.1| transcription antitermination protein NusB [Streptococcus
parasanguinis FW213]
gi|386793608|gb|AFJ26643.1| transcription antitermination protein NusB [Streptococcus
parasanguinis FW213]
Length = 148
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V D I + + W V ++ ++E +IL L + E+T T
Sbjct: 60 FLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERL-----TLVEKNILRLGIYEMTEFDTPQ 114
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEAV+LAK F D + R +NG L FV
Sbjct: 115 IVAVNEAVELAKAFSDETSSRFVNGVLSQFV 145
>gi|417923871|ref|ZP_12567327.1| transcription antitermination factor NusB [Streptococcus mitis
SK569]
gi|418967232|ref|ZP_13518903.1| transcription antitermination factor NusB [Streptococcus mitis
SK616]
gi|342836537|gb|EGU70749.1| transcription antitermination factor NusB [Streptococcus mitis
SK569]
gi|383344928|gb|EID23077.1| transcription antitermination factor NusB [Streptococcus mitis
SK616]
Length = 141
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
I++ + W V ++ ++E ++L L + EIT T + +NEA++LAK F D +
Sbjct: 70 INQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAKNFSDQKS 124
Query: 273 PRIINGCLRTFV 284
R ING L FV
Sbjct: 125 ARFINGLLSQFV 136
>gi|417849722|ref|ZP_12495639.1| transcription antitermination factor NusB [Streptococcus mitis
SK1080]
gi|339455649|gb|EGP68250.1| transcription antitermination factor NusB [Streptococcus mitis
SK1080]
Length = 141
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
I++ + W V ++ ++E ++L L + EIT T + +NEA++LAK F D +
Sbjct: 70 INQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAKNFSDQKS 124
Query: 273 PRIINGCLRTFV 284
R ING L FV
Sbjct: 125 ARFINGLLSQFV 136
>gi|322377045|ref|ZP_08051537.1| transcription antitermination factor NusB [Streptococcus sp. M334]
gi|321281758|gb|EFX58766.1| transcription antitermination factor NusB [Streptococcus sp. M334]
Length = 139
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + D I++ + W V ++ ++E ++L L + EIT T
Sbjct: 51 FLLNLVSGVQAQKDELDKQINQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQ 105
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEA++LAK F D + R ING L FV
Sbjct: 106 LVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|152993501|ref|YP_001359222.1| transcription antitermination protein NusB [Sulfurovum sp. NBC37-1]
gi|166215724|sp|A6QBK6.1|NUSB_SULNB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|151425362|dbj|BAF72865.1| transcription antitermination factor NusB [Sulfurovum sp. NBC37-1]
Length = 130
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W D GR+ E +IL L EI V T I+INEAV+LAK D +P+ ING L
Sbjct: 71 WDYD-AIGRV-EKAILRLGAYEILVAKTDRAIIINEAVELAKSLADEKSPQFINGVL 125
>gi|354568869|ref|ZP_08988030.1| NusB antitermination factor [Fischerella sp. JSC-11]
gi|353539381|gb|EHC08868.1| NusB antitermination factor [Fischerella sp. JSC-11]
Length = 210
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+V ++ Q ++ IL +A++EI +G + + I+EAV+LAKR+ R ING L
Sbjct: 145 WQVTRLAQ-----IDRDILRIAVAEILYLGVPNSVAIDEAVELAKRYSGDEGHRFINGVL 199
Query: 281 R 281
R
Sbjct: 200 R 200
>gi|421311195|ref|ZP_15761807.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA58981]
gi|395913574|gb|EJH24426.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA58981]
Length = 120
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 31 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQMVA 88
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 89 VNEAIELAKDFSDQKSARFINGLLSQFV 116
>gi|419514026|ref|ZP_14053654.1| transcription antitermination factor NusB [Streptococcus pneumoniae
England14-9]
gi|419522570|ref|ZP_14062153.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13723]
gi|421267655|ref|ZP_15718529.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SPAR95]
gi|379560191|gb|EHZ25217.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13723]
gi|379638516|gb|EIA03061.1| transcription antitermination factor NusB [Streptococcus pneumoniae
England14-9]
gi|395871661|gb|EJG82764.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SPAR95]
Length = 120
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 31 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 88
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
INEA++LAK F D + R ING L FV
Sbjct: 89 INEAIELAKDFSDQKSARFINGLLSQFV 116
>gi|343520136|ref|ZP_08757105.1| transcription antitermination factor NusB [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397094|gb|EGV09628.1| transcription antitermination factor NusB [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 135
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 16/123 (13%)
Query: 165 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPP-IWKV 223
+SDE ES IE L + L++ RK +++D H+ ID ++ +
Sbjct: 23 FKSDEIESFIEYFDLPSNE--------LKYIRKNCKSIID----HIDEIDNIIKENLEGC 70
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGAAPRIINGCLRT 282
W ++ A ++L+IL +A++EI + + INEA+++A ++ A+ + ING L T
Sbjct: 71 WNYNRIAK--IDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDASYKFINGILGT 128
Query: 283 FVR 285
VR
Sbjct: 129 IVR 131
>gi|15900351|ref|NP_344955.1| transcription antitermination protein NusB [Streptococcus
pneumoniae TIGR4]
gi|111657914|ref|ZP_01408625.1| hypothetical protein SpneT_02000923 [Streptococcus pneumoniae
TIGR4]
gi|116516227|ref|YP_815903.1| transcription antitermination protein NusB [Streptococcus
pneumoniae D39]
gi|148983827|ref|ZP_01817146.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP3-BS71]
gi|148988184|ref|ZP_01819647.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP6-BS73]
gi|148996835|ref|ZP_01824553.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP11-BS70]
gi|149003529|ref|ZP_01828403.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP14-BS69]
gi|149012182|ref|ZP_01833291.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP19-BS75]
gi|149023719|ref|ZP_01836199.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP23-BS72]
gi|168482670|ref|ZP_02707622.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC1873-00]
gi|168490656|ref|ZP_02714799.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC0288-04]
gi|168495037|ref|ZP_02719180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC3059-06]
gi|169832898|ref|YP_001693937.1| transcription antitermination protein NusB [Streptococcus
pneumoniae Hungary19A-6]
gi|194396779|ref|YP_002037111.1| transcription antitermination protein NusB [Streptococcus
pneumoniae G54]
gi|221231296|ref|YP_002510448.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae ATCC 700669]
gi|225856159|ref|YP_002737670.1| transcription antitermination protein NusB [Streptococcus
pneumoniae P1031]
gi|225860454|ref|YP_002741963.1| transcription antitermination protein NusB [Streptococcus
pneumoniae Taiwan19F-14]
gi|237650354|ref|ZP_04524606.1| transcription antitermination protein NusB [Streptococcus
pneumoniae CCRI 1974]
gi|237822042|ref|ZP_04597887.1| transcription antitermination protein NusB [Streptococcus
pneumoniae CCRI 1974M2]
gi|298230814|ref|ZP_06964495.1| transcription antitermination protein NusB [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254607|ref|ZP_06978193.1| transcription antitermination protein NusB [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502226|ref|YP_003724166.1| transcription antitermination protein NusB [Streptococcus
pneumoniae TCH8431/19A]
gi|307067077|ref|YP_003876043.1| transcription termination factor [Streptococcus pneumoniae AP200]
gi|387756940|ref|YP_006063919.1| N utilization substance protein B [Streptococcus pneumoniae OXC141]
gi|405761415|ref|YP_006702011.1| N utilization substance protein B [Streptococcus pneumoniae SPNA45]
gi|410475913|ref|YP_006742672.1| transcription antitermination protein NusB [Streptococcus
pneumoniae gamPNI0373]
gi|415697025|ref|ZP_11456599.1| transcription antitermination factor NusB [Streptococcus pneumoniae
459-5]
gi|415748794|ref|ZP_11476846.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SV35]
gi|415751504|ref|ZP_11478739.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SV36]
gi|417312022|ref|ZP_12098739.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04375]
gi|417693375|ref|ZP_12342564.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47901]
gi|417695605|ref|ZP_12344785.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47368]
gi|417697897|ref|ZP_12347070.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41317]
gi|418073288|ref|ZP_12710551.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11184]
gi|418075539|ref|ZP_12712781.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47502]
gi|418080121|ref|ZP_12717337.1| transcription antitermination factor NusB [Streptococcus pneumoniae
6735-05]
gi|418082328|ref|ZP_12719530.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44288]
gi|418084533|ref|ZP_12721721.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47281]
gi|418088854|ref|ZP_12726013.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA43265]
gi|418093295|ref|ZP_12730425.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA49138]
gi|418097836|ref|ZP_12734937.1| transcription antitermination factor NusB [Streptococcus pneumoniae
6901-05]
gi|418100007|ref|ZP_12737096.1| transcription antitermination factor NusB [Streptococcus pneumoniae
7286-06]
gi|418102153|ref|ZP_12739230.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP070]
gi|418104505|ref|ZP_12741565.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44500]
gi|418106793|ref|ZP_12743835.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41410]
gi|418114019|ref|ZP_12751012.1| transcription antitermination factor NusB [Streptococcus pneumoniae
5787-06]
gi|418118389|ref|ZP_12755349.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA18523]
gi|418120534|ref|ZP_12757482.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44194]
gi|418122741|ref|ZP_12759676.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44378]
gi|418127325|ref|ZP_12764223.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP170]
gi|418129609|ref|ZP_12766493.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA07643]
gi|418134147|ref|ZP_12771007.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11426]
gi|418141053|ref|ZP_12777867.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13455]
gi|418143267|ref|ZP_12780068.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13494]
gi|418145668|ref|ZP_12782454.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13637]
gi|418150018|ref|ZP_12786774.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA14798]
gi|418152195|ref|ZP_12788935.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA16121]
gi|418156692|ref|ZP_12793411.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA16833]
gi|418163788|ref|ZP_12800464.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17371]
gi|418166055|ref|ZP_12802713.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17971]
gi|418168540|ref|ZP_12805186.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19077]
gi|418170667|ref|ZP_12807296.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19451]
gi|418172825|ref|ZP_12809439.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41277]
gi|418175250|ref|ZP_12811848.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41437]
gi|418177495|ref|ZP_12814079.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41565]
gi|418186446|ref|ZP_12822977.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47360]
gi|418193112|ref|ZP_12829608.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47439]
gi|418195221|ref|ZP_12831702.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47688]
gi|418197344|ref|ZP_12833810.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47778]
gi|418215904|ref|ZP_12842628.1| transcription antitermination factor NusB [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218187|ref|ZP_12844855.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP127]
gi|418220390|ref|ZP_12847046.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47751]
gi|418222728|ref|ZP_12849374.1| transcription antitermination factor NusB [Streptococcus pneumoniae
5185-06]
gi|418227043|ref|ZP_12853664.1| transcription antitermination factor NusB [Streptococcus pneumoniae
3063-00]
gi|418229175|ref|ZP_12855785.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP01]
gi|418231548|ref|ZP_12858136.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA07228]
gi|419422467|ref|ZP_13962686.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA43264]
gi|419424489|ref|ZP_13964691.1| transcription antitermination factor NusB [Streptococcus pneumoniae
7533-05]
gi|419426616|ref|ZP_13966800.1| transcription antitermination factor NusB [Streptococcus pneumoniae
5652-06]
gi|419428714|ref|ZP_13968885.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11856]
gi|419433122|ref|ZP_13973242.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA40183]
gi|419435328|ref|ZP_13975424.1| transcription antitermination factor NusB [Streptococcus pneumoniae
8190-05]
gi|419437398|ref|ZP_13977474.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13499]
gi|419439667|ref|ZP_13979724.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA40410]
gi|419446181|ref|ZP_13986187.1| transcription antitermination factor NusB [Streptococcus pneumoniae
7879-04]
gi|419448351|ref|ZP_13988349.1| transcription antitermination factor NusB [Streptococcus pneumoniae
4075-00]
gi|419450430|ref|ZP_13990419.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP02]
gi|419457003|ref|ZP_13996952.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA02254]
gi|419463857|ref|ZP_14003753.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04175]
gi|419470434|ref|ZP_14010294.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA07914]
gi|419472527|ref|ZP_14012380.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13430]
gi|419474834|ref|ZP_14014676.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA14688]
gi|419477098|ref|ZP_14016924.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA18068]
gi|419479305|ref|ZP_14019117.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19101]
gi|419485940|ref|ZP_14025707.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44128]
gi|419490393|ref|ZP_14030135.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47179]
gi|419492586|ref|ZP_14032314.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47210]
gi|419496854|ref|ZP_14036566.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47522]
gi|419499000|ref|ZP_14038700.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47597]
gi|419501201|ref|ZP_14040888.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47628]
gi|419503284|ref|ZP_14042960.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47760]
gi|419505419|ref|ZP_14045080.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA49194]
gi|419518260|ref|ZP_14057870.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA08825]
gi|419528331|ref|ZP_14067873.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17719]
gi|419531702|ref|ZP_14071222.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47794]
gi|419533878|ref|ZP_14073386.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17457]
gi|421208305|ref|ZP_15665330.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070005]
gi|421210429|ref|ZP_15667419.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070035]
gi|421219646|ref|ZP_15676505.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070425]
gi|421224310|ref|ZP_15681056.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070768]
gi|421231242|ref|ZP_15687891.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2080076]
gi|421233478|ref|ZP_15690102.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2061617]
gi|421235627|ref|ZP_15692228.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2071004]
gi|421237869|ref|ZP_15694442.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2071247]
gi|421240010|ref|ZP_15696563.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2080913]
gi|421242426|ref|ZP_15698950.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2081074]
gi|421244307|ref|ZP_15700812.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2081685]
gi|421246684|ref|ZP_15703173.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2082170]
gi|421248781|ref|ZP_15705244.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2082239]
gi|421272091|ref|ZP_15722938.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SPAR55]
gi|421280449|ref|ZP_15731248.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04672]
gi|421286948|ref|ZP_15737714.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA58771]
gi|421313386|ref|ZP_15763980.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47562]
gi|444387175|ref|ZP_21185199.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS125219]
gi|444390420|ref|ZP_21188335.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS70012]
gi|444392949|ref|ZP_21190612.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS81218]
gi|444395368|ref|ZP_21192913.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0002]
gi|444396894|ref|ZP_21194381.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0006]
gi|444399254|ref|ZP_21196723.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0007]
gi|444401858|ref|ZP_21199038.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0008]
gi|444403964|ref|ZP_21200933.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0009]
gi|444408415|ref|ZP_21205059.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0010]
gi|444410697|ref|ZP_21207218.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0076]
gi|444413829|ref|ZP_21210144.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0153]
gi|444417935|ref|ZP_21213930.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0360]
gi|444419946|ref|ZP_21215778.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0427]
gi|444421965|ref|ZP_21217632.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0446]
gi|54037926|sp|P65583.1|NUSB_STRR6 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|54041676|sp|P65582.1|NUSB_STRPN RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|122279211|sp|Q04M45.1|NUSB_STRP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|238688321|sp|B1I9M4.1|NUSB_STRPI RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|238690799|sp|B5E1P3.1|NUSB_STRP4 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772658|sp|B8ZLJ7.1|NUSB_STRPJ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772661|sp|C1CIT2.1|NUSB_STRZP RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772662|sp|C1CPU1.1|NUSB_STRZT RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|14971902|gb|AAK74595.1| N utilization substance protein B [Streptococcus pneumoniae TIGR4]
gi|116076803|gb|ABJ54523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
D39]
gi|147757410|gb|EDK64449.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP11-BS70]
gi|147758465|gb|EDK65464.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP14-BS69]
gi|147763784|gb|EDK70718.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP19-BS75]
gi|147923974|gb|EDK75086.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP3-BS71]
gi|147926648|gb|EDK77721.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP6-BS73]
gi|147929656|gb|EDK80648.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP23-BS72]
gi|168995400|gb|ACA36012.1| transcription antitermination factor NusB [Streptococcus pneumoniae
Hungary19A-6]
gi|172043807|gb|EDT51853.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC1873-00]
gi|183575029|gb|EDT95557.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC0288-04]
gi|183575089|gb|EDT95617.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC3059-06]
gi|194356446|gb|ACF54894.1| transcription antitermination factor NusB [Streptococcus pneumoniae
G54]
gi|220673756|emb|CAR68255.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae ATCC 700669]
gi|225725650|gb|ACO21502.1| transcription antitermination factor NusB [Streptococcus pneumoniae
P1031]
gi|225726476|gb|ACO22327.1| transcription antitermination factor NusB [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237821|gb|ADI68952.1| transcription antitermination protein NusB [Streptococcus
pneumoniae TCH8431/19A]
gi|301799529|emb|CBW32077.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae OXC141]
gi|306408614|gb|ADM84041.1| Transcription termination factor [Streptococcus pneumoniae AP200]
gi|327390840|gb|EGE89180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04375]
gi|332202338|gb|EGJ16407.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41317]
gi|332203602|gb|EGJ17669.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47368]
gi|332204458|gb|EGJ18523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47901]
gi|353751553|gb|EHD32185.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47502]
gi|353752826|gb|EHD33451.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11184]
gi|353754440|gb|EHD35053.1| transcription antitermination factor NusB [Streptococcus pneumoniae
6735-05]
gi|353757765|gb|EHD38358.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44288]
gi|353760836|gb|EHD41412.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47281]
gi|353763356|gb|EHD43911.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA43265]
gi|353766860|gb|EHD47399.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA49138]
gi|353771309|gb|EHD51819.1| transcription antitermination factor NusB [Streptococcus pneumoniae
6901-05]
gi|353774006|gb|EHD54501.1| transcription antitermination factor NusB [Streptococcus pneumoniae
7286-06]
gi|353777865|gb|EHD58337.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP070]
gi|353778939|gb|EHD59405.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44500]
gi|353780989|gb|EHD61439.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41410]
gi|353788683|gb|EHD69080.1| transcription antitermination factor NusB [Streptococcus pneumoniae
5787-06]
gi|353791974|gb|EHD72347.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA18523]
gi|353795089|gb|EHD75441.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44194]
gi|353798214|gb|EHD78544.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44378]
gi|353801130|gb|EHD81438.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP170]
gi|353802901|gb|EHD83193.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA07643]
gi|353807540|gb|EHD87811.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13455]
gi|353810062|gb|EHD90318.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13494]
gi|353816542|gb|EHD96751.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13637]
gi|353818160|gb|EHD98360.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA14798]
gi|353818840|gb|EHD99038.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA16121]
gi|353825969|gb|EHE06133.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA16833]
gi|353832150|gb|EHE12273.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17971]
gi|353833214|gb|EHE13326.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17371]
gi|353836459|gb|EHE16547.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19077]
gi|353838222|gb|EHE18302.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19451]
gi|353839524|gb|EHE19598.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41277]
gi|353843810|gb|EHE23854.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41437]
gi|353844269|gb|EHE24312.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41565]
gi|353854268|gb|EHE34248.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47360]
gi|353861259|gb|EHE41198.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47439]
gi|353863340|gb|EHE43269.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47688]
gi|353865881|gb|EHE45788.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47778]
gi|353872955|gb|EHE52816.1| transcription antitermination factor NusB [Streptococcus pneumoniae
Netherlands15B-37]
gi|353876384|gb|EHE56233.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NP127]
gi|353877259|gb|EHE57102.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47751]
gi|353881816|gb|EHE61629.1| transcription antitermination factor NusB [Streptococcus pneumoniae
5185-06]
gi|353884248|gb|EHE64050.1| transcription antitermination factor NusB [Streptococcus pneumoniae
3063-00]
gi|353887854|gb|EHE67630.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA07228]
gi|353891012|gb|EHE70771.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP01]
gi|353904134|gb|EHE79648.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11426]
gi|379533689|gb|EHY98902.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA02254]
gi|379541136|gb|EHZ06307.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04175]
gi|379541534|gb|EHZ06700.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13499]
gi|379548067|gb|EHZ13202.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA07914]
gi|379553429|gb|EHZ18513.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13430]
gi|379553965|gb|EHZ19048.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11856]
gi|379562341|gb|EHZ27355.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA14688]
gi|379564354|gb|EHZ29350.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17719]
gi|379567897|gb|EHZ32880.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA18068]
gi|379568840|gb|EHZ33819.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17457]
gi|379574128|gb|EHZ39074.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19101]
gi|379578245|gb|EHZ43159.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA40183]
gi|379582152|gb|EHZ47035.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA40410]
gi|379588849|gb|EHZ53689.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44128]
gi|379589798|gb|EHZ54637.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA43264]
gi|379596283|gb|EHZ61088.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47210]
gi|379596673|gb|EHZ61477.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47179]
gi|379602979|gb|EHZ67749.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47522]
gi|379603446|gb|EHZ68215.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47628]
gi|379603888|gb|EHZ68656.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47597]
gi|379607333|gb|EHZ72079.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA49194]
gi|379610028|gb|EHZ74765.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47794]
gi|379610658|gb|EHZ75389.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47760]
gi|379615639|gb|EHZ80345.1| transcription antitermination factor NusB [Streptococcus pneumoniae
7879-04]
gi|379616997|gb|EHZ81690.1| transcription antitermination factor NusB [Streptococcus pneumoniae
8190-05]
gi|379619576|gb|EHZ84248.1| transcription antitermination factor NusB [Streptococcus pneumoniae
5652-06]
gi|379620723|gb|EHZ85375.1| transcription antitermination factor NusB [Streptococcus pneumoniae
7533-05]
gi|379625163|gb|EHZ89791.1| transcription antitermination factor NusB [Streptococcus pneumoniae
4075-00]
gi|379625575|gb|EHZ90202.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP02]
gi|379642473|gb|EIA07005.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA08825]
gi|381311109|gb|EIC51934.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SV36]
gi|381319051|gb|EIC59768.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SV35]
gi|381319733|gb|EIC60423.1| transcription antitermination factor NusB [Streptococcus pneumoniae
459-5]
gi|395575304|gb|EJG35873.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070035]
gi|395576775|gb|EJG37329.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070005]
gi|395590717|gb|EJG51019.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070425]
gi|395591646|gb|EJG51941.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070768]
gi|395597044|gb|EJG57252.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2080076]
gi|395603318|gb|EJG63455.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2061617]
gi|395604546|gb|EJG64678.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2071004]
gi|395605395|gb|EJG65526.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2071247]
gi|395610884|gb|EJG70960.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2080913]
gi|395610944|gb|EJG71019.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2081074]
gi|395611273|gb|EJG71347.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2081685]
gi|395615410|gb|EJG75426.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2082239]
gi|395615878|gb|EJG75893.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2082170]
gi|395877650|gb|EJG88719.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SPAR55]
gi|395883806|gb|EJG94848.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04672]
gi|395889357|gb|EJH00364.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA58771]
gi|395915357|gb|EJH26197.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47562]
gi|404278304|emb|CCM08909.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae SPNA45]
gi|406368858|gb|AFS42548.1| transcription antitermination protein NusB [Streptococcus
pneumoniae gamPNI0373]
gi|429318915|emb|CCP32133.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae SPN034183]
gi|429320728|emb|CCP34106.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae SPN994039]
gi|429322548|emb|CCP30147.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae SPN994038]
gi|444253773|gb|ELU60227.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS125219]
gi|444256883|gb|ELU63221.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS70012]
gi|444258326|gb|ELU64652.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0002]
gi|444262125|gb|ELU68423.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0006]
gi|444262704|gb|ELU68991.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PCS81218]
gi|444267549|gb|ELU73448.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0008]
gi|444268960|gb|ELU74779.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0007]
gi|444270073|gb|ELU75867.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0010]
gi|444273000|gb|ELU78687.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0153]
gi|444276776|gb|ELU82314.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0076]
gi|444277609|gb|ELU83111.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0009]
gi|444282250|gb|ELU87525.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0360]
gi|444285883|gb|ELU90896.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0427]
gi|444288735|gb|ELU93625.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0446]
Length = 140
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|347542399|ref|YP_004857036.1| transcription antitermination protein NusB [Candidatus Arthromitus
sp. SFB-rat-Yit]
gi|346985435|dbj|BAK81110.1| transcription antitermination protein NusB [Candidatus Arthromitus
sp. SFB-rat-Yit]
Length = 149
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
++ + V++ D H ID ++ K WK+++ A ++LSIL LA+ E+ G
Sbjct: 51 LNKEYCLNVLNGIDLHRDEIDNLIQNNLKRWKINRIAK--IDLSILRLAVYEMCFDGLPP 108
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 292
+I INEA++L K + + ING L + ++ E + N
Sbjct: 109 KIAINEALNLTKTYSVEKSKGYINGVLDSIKKSREDSIN 147
>gi|307706079|ref|ZP_07642898.1| transcription antitermination factor NusB [Streptococcus mitis
SK321]
gi|307618479|gb|EFN97627.1| transcription antitermination factor NusB [Streptococcus mitis
SK321]
Length = 139
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + D I++ + W V ++ ++E ++L L + EIT T
Sbjct: 51 FLLNLVSGVQAQKDELDKQINQHLKSGWTVERL-----TLVEKNLLRLGIFEITSFDTPQ 105
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEA++LAK F D + R ING L FV
Sbjct: 106 LVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|404417202|ref|ZP_10999006.1| transcription antitermination protein NusB [Staphylococcus arlettae
CVD059]
gi|403490400|gb|EJY95941.1| transcription antitermination protein NusB [Staphylococcus arlettae
CVD059]
Length = 128
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D + P K W +D+ RI IL +A E+ T ++VINEAV+LAK+
Sbjct: 55 HETVLDDKIQPHLKEWTLDRLLKTDRI----ILRMATFELLQSDTPKKVVINEAVELAKQ 110
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 111 FSDDDHYKFINGVL 124
>gi|30022264|ref|NP_833895.1| transcription antitermination protein NusB [Bacillus cereus ATCC
14579]
gi|206971091|ref|ZP_03232042.1| N utilization substance protein B [Bacillus cereus AH1134]
gi|218233314|ref|YP_002368985.1| transcription antitermination protein NusB [Bacillus cereus B4264]
gi|218899346|ref|YP_002447757.1| transcription antitermination protein NusB [Bacillus cereus G9842]
gi|228902700|ref|ZP_04066847.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
gi|228910018|ref|ZP_04073838.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
gi|228922937|ref|ZP_04086231.1| N utilization substance protein B [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228967223|ref|ZP_04128259.1| N utilization substance protein B [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228974275|ref|ZP_04134844.1| N utilization substance protein B [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|296504671|ref|YP_003666371.1| transcription antitermination protein NusB [Bacillus thuringiensis
BMB171]
gi|365159029|ref|ZP_09355216.1| transcription antitermination factor NusB [Bacillus sp.
7_6_55CFAA_CT2]
gi|384188254|ref|YP_005574150.1| transcription antitermination protein [Bacillus thuringiensis
serovar chinensis CT-43]
gi|402564403|ref|YP_006607127.1| transcription antitermination protein NusB [Bacillus thuringiensis
HD-771]
gi|410676571|ref|YP_006928942.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
gi|423358777|ref|ZP_17336280.1| transcription antitermination factor NusB [Bacillus cereus VD022]
gi|423385686|ref|ZP_17362942.1| transcription antitermination factor NusB [Bacillus cereus
BAG1X1-2]
gi|423395516|ref|ZP_17372717.1| transcription antitermination factor NusB [Bacillus cereus
BAG2X1-1]
gi|423412013|ref|ZP_17389133.1| transcription antitermination factor NusB [Bacillus cereus BAG3O-2]
gi|423426318|ref|ZP_17403349.1| transcription antitermination factor NusB [Bacillus cereus
BAG3X2-2]
gi|423432202|ref|ZP_17409206.1| transcription antitermination factor NusB [Bacillus cereus BAG4O-1]
gi|423437636|ref|ZP_17414617.1| transcription antitermination factor NusB [Bacillus cereus
BAG4X12-1]
gi|423503129|ref|ZP_17479721.1| transcription antitermination factor NusB [Bacillus cereus HD73]
gi|423527958|ref|ZP_17504403.1| transcription antitermination factor NusB [Bacillus cereus HuB1-1]
gi|423561341|ref|ZP_17537617.1| transcription antitermination factor NusB [Bacillus cereus MSX-A1]
gi|423582394|ref|ZP_17558505.1| transcription antitermination factor NusB [Bacillus cereus VD014]
gi|423585335|ref|ZP_17561422.1| transcription antitermination factor NusB [Bacillus cereus VD045]
gi|423630907|ref|ZP_17606654.1| transcription antitermination factor NusB [Bacillus cereus VD154]
gi|423634989|ref|ZP_17610642.1| transcription antitermination factor NusB [Bacillus cereus VD156]
gi|423640735|ref|ZP_17616353.1| transcription antitermination factor NusB [Bacillus cereus VD166]
gi|423650049|ref|ZP_17625619.1| transcription antitermination factor NusB [Bacillus cereus VD169]
gi|423657127|ref|ZP_17632426.1| transcription antitermination factor NusB [Bacillus cereus VD200]
gi|434377307|ref|YP_006611951.1| transcription antitermination protein NusB [Bacillus thuringiensis
HD-789]
gi|449091142|ref|YP_007423583.1| transcription antitermination protein NusB [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|452200643|ref|YP_007480724.1| Transcription termination protein NusB [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|39931865|sp|Q818R4.1|NUSB_BACCR RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|226737439|sp|B7IXH3.1|NUSB_BACC2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|226737885|sp|B7HB53.1|NUSB_BACC4 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|29897821|gb|AAP11096.1| N utilization substance protein B [Bacillus cereus ATCC 14579]
gi|206733863|gb|EDZ51034.1| N utilization substance protein B [Bacillus cereus AH1134]
gi|218161271|gb|ACK61263.1| N utilization substance protein B [Bacillus cereus B4264]
gi|218545985|gb|ACK98379.1| N utilization substance protein B [Bacillus cereus G9842]
gi|228785325|gb|EEM33335.1| N utilization substance protein B [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792592|gb|EEM40158.1| N utilization substance protein B [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228836708|gb|EEM82055.1| N utilization substance protein B [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228849535|gb|EEM94369.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
gi|228856887|gb|EEN01400.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
gi|296325723|gb|ADH08651.1| transcription antitermination protein NusB [Bacillus thuringiensis
BMB171]
gi|326941963|gb|AEA17859.1| transcription antitermination protein [Bacillus thuringiensis
serovar chinensis CT-43]
gi|363626018|gb|EHL77027.1| transcription antitermination factor NusB [Bacillus sp.
7_6_55CFAA_CT2]
gi|401084649|gb|EJP92895.1| transcription antitermination factor NusB [Bacillus cereus VD022]
gi|401104081|gb|EJQ12058.1| transcription antitermination factor NusB [Bacillus cereus BAG3O-2]
gi|401111065|gb|EJQ18964.1| transcription antitermination factor NusB [Bacillus cereus
BAG3X2-2]
gi|401116958|gb|EJQ24796.1| transcription antitermination factor NusB [Bacillus cereus BAG4O-1]
gi|401120791|gb|EJQ28587.1| transcription antitermination factor NusB [Bacillus cereus
BAG4X12-1]
gi|401201598|gb|EJR08463.1| transcription antitermination factor NusB [Bacillus cereus MSX-A1]
gi|401213273|gb|EJR20014.1| transcription antitermination factor NusB [Bacillus cereus VD014]
gi|401233978|gb|EJR40464.1| transcription antitermination factor NusB [Bacillus cereus VD045]
gi|401264274|gb|EJR70386.1| transcription antitermination factor NusB [Bacillus cereus VD154]
gi|401278975|gb|EJR84905.1| transcription antitermination factor NusB [Bacillus cereus VD156]
gi|401279796|gb|EJR85718.1| transcription antitermination factor NusB [Bacillus cereus VD166]
gi|401282467|gb|EJR88366.1| transcription antitermination factor NusB [Bacillus cereus VD169]
gi|401289870|gb|EJR95574.1| transcription antitermination factor NusB [Bacillus cereus VD200]
gi|401635742|gb|EJS53497.1| transcription antitermination factor NusB [Bacillus cereus
BAG1X1-2]
gi|401654927|gb|EJS72466.1| transcription antitermination factor NusB [Bacillus cereus
BAG2X1-1]
gi|401793055|gb|AFQ19094.1| transcription antitermination protein NusB [Bacillus thuringiensis
HD-771]
gi|401875864|gb|AFQ28031.1| transcription antitermination protein NusB [Bacillus thuringiensis
HD-789]
gi|402451621|gb|EJV83440.1| transcription antitermination factor NusB [Bacillus cereus HuB1-1]
gi|402459350|gb|EJV91087.1| transcription antitermination factor NusB [Bacillus cereus HD73]
gi|409175700|gb|AFV20005.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
gi|449024899|gb|AGE80062.1| transcription antitermination protein NusB [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|452106036|gb|AGG02976.1| Transcription termination protein NusB [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 130
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
F L+V V+ +A ID+ + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVENKEA----IDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|418325691|ref|ZP_12936897.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU071]
gi|365228293|gb|EHM69478.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU071]
Length = 129
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 28/129 (21%)
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
T T++EA E ++ D +S L F L+ V D H ++
Sbjct: 22 TDLTIQEAIEFIKDD------------------HSDLDFDFIYWLVTGVKD----HQIVL 59
Query: 214 DKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
D+ + P K W +D+ + RI IL +A EI T ++V+NEAV+L K+F D
Sbjct: 60 DETIKPHLKDWSIDRLLKSDRI----ILRMATFEILHSDTPKKVVVNEAVELTKKFSDDD 115
Query: 272 APRIINGCL 280
+ +NG L
Sbjct: 116 HYKFVNGVL 124
>gi|337282609|ref|YP_004622080.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
15912]
gi|419799704|ref|ZP_14325035.1| transcription antitermination factor NusB [Streptococcus
parasanguinis F0449]
gi|335370202|gb|AEH56152.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
15912]
gi|385697399|gb|EIG27827.1| transcription antitermination factor NusB [Streptococcus
parasanguinis F0449]
Length = 143
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V D I + + W V ++ ++E +IL L + EIT T
Sbjct: 55 FLMNLVTGVYQSKDQLDQQIGQHLKAGWTVERL-----TLVEKNILRLGIYEITEFDTPQ 109
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEAV+LAK F D + R +NG L FV
Sbjct: 110 IVAVNEAVELAKAFSDEISSRFVNGVLSQFV 140
>gi|417685899|ref|ZP_12335179.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41301]
gi|332077717|gb|EGI88178.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41301]
Length = 121
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 31 FLIDLVSDVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 88
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 89 VNEAIELAKDFSDQKSARFINGLLSQFV 116
>gi|427722921|ref|YP_007070198.1| NusB antitermination factor [Leptolyngbya sp. PCC 7376]
gi|427354641|gb|AFY37364.1| NusB antitermination factor [Leptolyngbya sp. PCC 7376]
Length = 212
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 237 SILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANI 293
IL +A++EI + +++ INEAV+LAKR+ D R ING LR L +
Sbjct: 156 DILRIAVAEIMFLDIPYKVAINEAVELAKRYSDEDGHRFINGVLRRITDKLRAQEQV 212
>gi|20807741|ref|NP_622912.1| transcription antitermination protein NusB [Thermoanaerobacter
tengcongensis MB4]
gi|22095940|sp|Q8RAD1.1|NUSB_THETN RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|20516294|gb|AAM24516.1| Transcription termination factor [Thermoanaerobacter tengcongensis
MB4]
Length = 140
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H+ ID+ + K W P R+ ++L+IL +M E+ I INEAV++AK+
Sbjct: 54 HLEEIDREIEKYSKDW----PLYRMPRIDLAILRCSMYEMLYGNIPVSISINEAVEIAKK 109
Query: 267 FCDGAAPRIINGCLRTFVRNL---EGTAN 292
+ +P ING L FVR EG AN
Sbjct: 110 YSTDDSPSFINGLLGAFVREKGLEEGEAN 138
>gi|429728044|ref|ZP_19262789.1| transcription antitermination factor NusB [Peptostreptococcus
anaerobius VPI 4330]
gi|429150716|gb|EKX93613.1| transcription antitermination factor NusB [Peptostreptococcus
anaerobius VPI 4330]
Length = 164
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 175 EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRIL 234
E ++L P L+ L+ +V +DA+ ID + + W +D I+
Sbjct: 60 ELDLLEMPGDLL-------LDASYLMDMVAAFDANREEIDSNINKFARKWTIDTLP--IV 110
Query: 235 ELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+++IL +A++EI ++ I +EAV+LAK++CD A + ING L + V +
Sbjct: 111 DVAILRMAITEILYMIDIPDGISCDEAVNLAKKYCDDGAYKYINGILGSVVND 163
>gi|22298329|ref|NP_681576.1| transcription antitermination protein NusB [Thermosynechococcus
elongatus BP-1]
gi|32171633|sp|Q8DKS0.1|NUSB_THEEB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|22294508|dbj|BAC08338.1| tll0787 [Thermosynechococcus elongatus BP-1]
Length = 212
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W++ ++ Q L+ +I+ +A+ E+ + Q+ INEA++LAKR+ D + R ING L
Sbjct: 142 WQLERLTQ-----LDRAIIEIAVVEMRYLEVAKQVAINEAIELAKRYSDEGSHRFINGVL 196
Query: 281 R 281
R
Sbjct: 197 R 197
>gi|295093397|emb|CBK82488.1| transcription antitermination factor NusB [Coprococcus sp. ART55/1]
Length = 159
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT-RHQIVINEAVDLAKRFCDGA 271
ID+++ I + WK+ P EL+IL L + E+ + ++ INEAV+LAK++CD +
Sbjct: 73 IDEIISQISEGWKL--PRIGKEELAILRLGVYEVKYDESIPEKVAINEAVELAKKYCDAS 130
Query: 272 APRIINGCLRTFV 284
A + +N L V
Sbjct: 131 ASKFVNALLAKLV 143
>gi|417915749|ref|ZP_12559354.1| transcription antitermination factor NusB [Streptococcus mitis bv.
2 str. SK95]
gi|342832766|gb|EGU67056.1| transcription antitermination factor NusB [Streptococcus mitis bv.
2 str. SK95]
Length = 140
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 213 IDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
+DK + K W +++ ++E ++L L + EIT T + +NEA++LAK F D
Sbjct: 66 LDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFNTPQLVAVNEAIELAKDFSDQK 123
Query: 272 APRIINGCLRTFV 284
+ R ING L FV
Sbjct: 124 SARFINGLLSQFV 136
>gi|317154514|ref|YP_004122562.1| transcription antitermination factor NusB [Desulfovibrio
aespoeensis Aspo-2]
gi|316944765|gb|ADU63816.1| transcription antitermination factor NusB [Desulfovibrio
aespoeensis Aspo-2]
Length = 151
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 152 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 211
PV T E + ++ E E+A E F R L++ V D ++
Sbjct: 35 PVDIGTAFERNPMVEEQESETARE------------------FARALVLGV----DKNLA 72
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
ID + + WK D+ A ++ELSIL L++ E+ + INEA++L+K F D
Sbjct: 73 RIDAAIGEHSQHWKFDRIA--VIELSILRLSLYEMLFTDIPVKAAINEAIELSKLFGDEK 130
Query: 272 APRIINGCLRTFVRNL 287
+ +NG L R +
Sbjct: 131 SRGFVNGILDGVARTM 146
>gi|339640959|ref|ZP_08662403.1| transcription antitermination factor NusB [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339454228|gb|EGP66843.1| transcription antitermination factor NusB [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 140
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV-INEAVDLAKR 266
+ + + DK+ + K W +++ ++E SIL L + E+ Q+V INEA++LAK+
Sbjct: 62 SKIELDDKIRQHLKKGWALERLT--LVEKSILRLGLYELLEYDETPQLVAINEAIELAKK 119
Query: 267 FCDGAAPRIINGCLRTFV 284
F D + + +NG L FV
Sbjct: 120 FSDEKSSKFVNGILSQFV 137
>gi|322390165|ref|ZP_08063697.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
903]
gi|321143125|gb|EFX38571.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
903]
Length = 143
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V D I + + W V ++ ++E +IL L + E+T T
Sbjct: 55 FLMNLVTGVYQSKDQLDQQIGQHLKTGWTVERL-----TLVEKNILRLGIYEMTEFDTPQ 109
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEAV+LAK F D + R +NG L FV
Sbjct: 110 IVAVNEAVELAKAFSDETSSRFVNGVLSQFV 140
>gi|398817099|ref|ZP_10575730.1| transcription antitermination factor NusB [Brevibacillus sp. BC25]
gi|398030901|gb|EJL24300.1| transcription antitermination factor NusB [Brevibacillus sp. BC25]
Length = 134
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGT 251
++ R LL V++ ++ ID + + W++++ A ++ +IL LA EI T
Sbjct: 40 QYLRYLLDGVLN----NLTEIDSEIKKYLRGWQLERIAN--VDRAILRLAFYEIMFEQDT 93
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++V+NEA+++AK F D + R ING L +F+++ E
Sbjct: 94 PDKVVMNEAIEIAKLFSDETSHRYINGVLSSFLQSRE 130
>gi|293364851|ref|ZP_06611568.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
gi|307703100|ref|ZP_07640047.1| transcription antitermination factor NusB [Streptococcus oralis
ATCC 35037]
gi|315612604|ref|ZP_07887517.1| transcription antitermination factor NusB [Streptococcus sanguinis
ATCC 49296]
gi|322374852|ref|ZP_08049366.1| transcription antitermination factor NusB [Streptococcus sp. C300]
gi|331266955|ref|YP_004326585.1| transcription antitermination protein NusB [Streptococcus oralis
Uo5]
gi|417939807|ref|ZP_12583095.1| transcription antitermination factor NusB [Streptococcus oralis
SK313]
gi|419777925|ref|ZP_14303827.1| transcription antitermination factor NusB [Streptococcus oralis
SK10]
gi|419782468|ref|ZP_14308273.1| transcription antitermination factor NusB [Streptococcus oralis
SK610]
gi|421487777|ref|ZP_15935175.1| transcription antitermination factor NusB [Streptococcus oralis
SK304]
gi|291316301|gb|EFE56737.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
gi|307623493|gb|EFO02483.1| transcription antitermination factor NusB [Streptococcus oralis
ATCC 35037]
gi|315315585|gb|EFU63624.1| transcription antitermination factor NusB [Streptococcus sanguinis
ATCC 49296]
gi|321280352|gb|EFX57391.1| transcription antitermination factor NusB [Streptococcus sp. C300]
gi|326683627|emb|CBZ01245.1| transcription antitermination protein NusB [Streptococcus oralis
Uo5]
gi|343388688|gb|EGV01273.1| transcription antitermination factor NusB [Streptococcus oralis
SK313]
gi|383183234|gb|EIC75775.1| transcription antitermination factor NusB [Streptococcus oralis
SK610]
gi|383187678|gb|EIC80122.1| transcription antitermination factor NusB [Streptococcus oralis
SK10]
gi|400369739|gb|EJP22736.1| transcription antitermination factor NusB [Streptococcus oralis
SK304]
Length = 140
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLTELVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|428301240|ref|YP_007139546.1| NusB antitermination factor [Calothrix sp. PCC 6303]
gi|428237784|gb|AFZ03574.1| NusB antitermination factor [Calothrix sp. PCC 6303]
Length = 209
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+V ++ Q ++ IL +A++E++ +G + INEAV+LAKR+ + R ING L
Sbjct: 145 WQVNRLAQ-----IDRDILRIAVTEMSFLGLEPSMAINEAVELAKRYSEEDGYRFINGVL 199
Query: 281 R 281
R
Sbjct: 200 R 200
>gi|358464158|ref|ZP_09174124.1| transcription antitermination factor NusB [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357067186|gb|EHI77312.1| transcription antitermination factor NusB [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 140
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLTELVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|319946361|ref|ZP_08020599.1| N utilization substance protein B [Streptococcus australis ATCC
700641]
gi|417919931|ref|ZP_12563452.1| transcription antitermination factor NusB [Streptococcus australis
ATCC 700641]
gi|319747514|gb|EFV99769.1| N utilization substance protein B [Streptococcus australis ATCC
700641]
gi|342831487|gb|EGU65803.1| transcription antitermination factor NusB [Streptococcus australis
ATCC 700641]
Length = 142
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++E +IL L + EIT T + +NEA++LAK F D + R +NG L FV E
Sbjct: 87 LVEKNILRLGVFEITSFDTPQLVAVNEAIELAKTFSDEKSARFVNGVLSQFVTEAE 142
>gi|27468123|ref|NP_764760.1| transcription antitermination protein NusB [Staphylococcus
epidermidis ATCC 12228]
gi|57867014|ref|YP_188662.1| transcription antitermination protein NusB [Staphylococcus
epidermidis RP62A]
gi|251810937|ref|ZP_04825410.1| transcription antitermination protein NusB [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876054|ref|ZP_06284921.1| transcription antitermination factor NusB [Staphylococcus
epidermidis SK135]
gi|293366519|ref|ZP_06613196.1| N utilization substance protein B [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417647029|ref|ZP_12296878.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU144]
gi|417656116|ref|ZP_12305807.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU028]
gi|417659618|ref|ZP_12309218.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU045]
gi|417908670|ref|ZP_12552427.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU037]
gi|417912297|ref|ZP_12555992.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU105]
gi|417913731|ref|ZP_12557394.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU109]
gi|418605784|ref|ZP_13169091.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU041]
gi|418606653|ref|ZP_13169923.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU057]
gi|418609670|ref|ZP_13172806.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU065]
gi|418613284|ref|ZP_13176298.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU117]
gi|418616435|ref|ZP_13179360.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU120]
gi|418621844|ref|ZP_13184609.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU123]
gi|418625265|ref|ZP_13187918.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU125]
gi|418627790|ref|ZP_13190360.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU126]
gi|418629152|ref|ZP_13191666.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU127]
gi|418664545|ref|ZP_13226013.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU081]
gi|419769473|ref|ZP_14295567.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-250]
gi|419771710|ref|ZP_14297756.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-K]
gi|420163106|ref|ZP_14669853.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM095]
gi|420165519|ref|ZP_14672210.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM088]
gi|420167918|ref|ZP_14674570.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM087]
gi|420170232|ref|ZP_14676793.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM070]
gi|420172574|ref|ZP_14679073.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM067]
gi|420183184|ref|ZP_14689317.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM049]
gi|420184495|ref|ZP_14690604.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM040]
gi|420187275|ref|ZP_14693296.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM039]
gi|420194818|ref|ZP_14700615.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM021]
gi|420197402|ref|ZP_14703126.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM020]
gi|420201651|ref|ZP_14707261.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM018]
gi|420206160|ref|ZP_14711670.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM008]
gi|420209027|ref|ZP_14714465.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM003]
gi|420211185|ref|ZP_14716559.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM001]
gi|420213981|ref|ZP_14719261.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH05005]
gi|420216547|ref|ZP_14721753.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH05001]
gi|420219180|ref|ZP_14724214.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH04008]
gi|420221693|ref|ZP_14726620.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH08001]
gi|420225717|ref|ZP_14730544.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH06004]
gi|420227308|ref|ZP_14732079.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH05003]
gi|420229624|ref|ZP_14734330.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH04003]
gi|420232038|ref|ZP_14736680.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH051668]
gi|420234682|ref|ZP_14739242.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH051475]
gi|421606986|ref|ZP_16048236.1| transcription antitermination protein NusB [Staphylococcus
epidermidis AU12-03]
gi|32129816|sp|Q8CP37.1|NUSB_STAES RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|71153023|sp|Q5HP28.1|NUSB_STAEQ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|27315669|gb|AAO04804.1|AE016748_38 transcription termination factor [Staphylococcus epidermidis ATCC
12228]
gi|57637672|gb|AAW54460.1| N utilization substance protein B [Staphylococcus epidermidis
RP62A]
gi|251805617|gb|EES58274.1| transcription antitermination protein NusB [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295079|gb|EFA87606.1| transcription antitermination factor NusB [Staphylococcus
epidermidis SK135]
gi|291319288|gb|EFE59657.1| N utilization substance protein B [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725378|gb|EGG61861.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU144]
gi|329735255|gb|EGG71547.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU045]
gi|329737366|gb|EGG73620.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU028]
gi|341651308|gb|EGS75113.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU105]
gi|341654753|gb|EGS78491.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU109]
gi|341656031|gb|EGS79754.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU037]
gi|374401487|gb|EHQ72560.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU041]
gi|374406609|gb|EHQ77501.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU065]
gi|374407429|gb|EHQ78291.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU057]
gi|374410355|gb|EHQ81113.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU081]
gi|374816219|gb|EHR80426.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU117]
gi|374821261|gb|EHR85328.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU120]
gi|374825407|gb|EHR89343.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU125]
gi|374828272|gb|EHR92111.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU123]
gi|374828937|gb|EHR92760.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU126]
gi|374834583|gb|EHR98222.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU127]
gi|383358092|gb|EID35553.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-250]
gi|383360529|gb|EID37924.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-K]
gi|394234795|gb|EJD80369.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM095]
gi|394235320|gb|EJD80892.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM088]
gi|394237946|gb|EJD83432.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM087]
gi|394240570|gb|EJD85993.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM070]
gi|394241735|gb|EJD87144.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM067]
gi|394249647|gb|EJD94860.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM049]
gi|394256254|gb|EJE01187.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM039]
gi|394257146|gb|EJE02068.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM040]
gi|394263878|gb|EJE08599.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM021]
gi|394266209|gb|EJE10855.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM020]
gi|394271919|gb|EJE16398.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM018]
gi|394277999|gb|EJE22316.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM008]
gi|394279255|gb|EJE23563.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM003]
gi|394281638|gb|EJE25864.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM001]
gi|394283903|gb|EJE28064.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH05005]
gi|394290319|gb|EJE34183.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH08001]
gi|394290878|gb|EJE34723.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH04008]
gi|394291720|gb|EJE35509.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH05001]
gi|394293151|gb|EJE36874.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH06004]
gi|394297239|gb|EJE40842.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH05003]
gi|394299390|gb|EJE42941.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH04003]
gi|394301760|gb|EJE45214.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH051668]
gi|394303925|gb|EJE47335.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIH051475]
gi|406657279|gb|EKC83668.1| transcription antitermination protein NusB [Staphylococcus
epidermidis AU12-03]
Length = 129
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 28/129 (21%)
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
T T++EA E ++ D +S L F L+ V D H ++
Sbjct: 22 TDLTIQEAIEFIKDD------------------HSDLDFDFIYWLVTGVKD----HQIVL 59
Query: 214 DKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
D+ + P K W +D+ + RI IL +A EI T ++V+NEAV+L K+F D
Sbjct: 60 DETIKPHLKDWSIDRLLKSDRI----ILRMATFEILHSDTPKKVVVNEAVELTKQFSDDD 115
Query: 272 APRIINGCL 280
+ +NG L
Sbjct: 116 HYKFVNGVL 124
>gi|167756946|ref|ZP_02429073.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
gi|237734649|ref|ZP_04565130.1| predicted protein [Mollicutes bacterium D7]
gi|365833487|ref|ZP_09375003.1| transcription antitermination factor NusB [Coprobacillus sp.
3_3_56FAA]
gi|374625594|ref|ZP_09698010.1| transcription antitermination factor NusB [Coprobacillus sp.
8_2_54BFAA]
gi|167703121|gb|EDS17700.1| transcription antitermination factor NusB [Clostridium ramosum DSM
1402]
gi|229382469|gb|EEO32560.1| predicted protein [Coprobacillus sp. D7]
gi|365257931|gb|EHM87954.1| transcription antitermination factor NusB [Coprobacillus sp.
3_3_56FAA]
gi|373915254|gb|EHQ47025.1| transcription antitermination factor NusB [Coprobacillus sp.
8_2_54BFAA]
Length = 134
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W +D+ + +EL+IL + E+ +++INEAV+L+K++CD A + ING L
Sbjct: 76 WTLDRLSK--MELAILLVGCYELLETEQSKEVIINEAVELSKKYCDSDAYKFINGLL 130
>gi|307704282|ref|ZP_07641201.1| transcription antitermination factor NusB [Streptococcus mitis
SK597]
gi|307622193|gb|EFO01211.1| transcription antitermination factor NusB [Streptococcus mitis
SK597]
Length = 141
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVEKNLLRLGIFEITSFDTPQLVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|229093241|ref|ZP_04224359.1| N utilization substance protein B [Bacillus cereus Rock3-42]
gi|228690215|gb|EEL44009.1| N utilization substance protein B [Bacillus cereus Rock3-42]
Length = 130
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVIGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|30264257|ref|NP_846634.1| transcription antitermination protein NusB [Bacillus anthracis str.
Ames]
gi|47529700|ref|YP_021049.1| transcription antitermination protein NusB [Bacillus anthracis str.
'Ames Ancestor']
gi|47569441|ref|ZP_00240122.1| transcription antitermination factor nusB [Bacillus cereus G9241]
gi|49187084|ref|YP_030336.1| transcription antitermination protein NusB [Bacillus anthracis str.
Sterne]
gi|49478572|ref|YP_038243.1| transcription antitermination protein NusB [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141314|ref|YP_085515.1| transcription antitermination protein NusB [Bacillus cereus E33L]
gi|65321567|ref|ZP_00394526.1| COG0781: Transcription termination factor [Bacillus anthracis str.
A2012]
gi|118479373|ref|YP_896524.1| transcription antitermination protein NusB [Bacillus thuringiensis
str. Al Hakam]
gi|165873007|ref|ZP_02217629.1| N utilization substance protein B [Bacillus anthracis str. A0488]
gi|167634649|ref|ZP_02392969.1| N utilization substance protein B [Bacillus anthracis str. A0442]
gi|167638629|ref|ZP_02396905.1| N utilization substance protein B [Bacillus anthracis str. A0193]
gi|170687525|ref|ZP_02878742.1| N utilization substance protein B [Bacillus anthracis str. A0465]
gi|170709044|ref|ZP_02899474.1| N utilization substance protein B [Bacillus anthracis str. A0389]
gi|177654829|ref|ZP_02936586.1| N utilization substance protein B [Bacillus anthracis str. A0174]
gi|190565849|ref|ZP_03018768.1| N utilization substance protein B [Bacillus anthracis str.
Tsiankovskii-I]
gi|196034887|ref|ZP_03102294.1| N utilization substance protein B [Bacillus cereus W]
gi|196041593|ref|ZP_03108885.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
gi|196046394|ref|ZP_03113620.1| N utilization substance protein B [Bacillus cereus 03BB108]
gi|206976312|ref|ZP_03237220.1| N utilization substance protein B [Bacillus cereus H3081.97]
gi|217961672|ref|YP_002340242.1| transcription antitermination protein NusB [Bacillus cereus AH187]
gi|218905318|ref|YP_002453152.1| transcription antitermination protein NusB [Bacillus cereus AH820]
gi|222097628|ref|YP_002531685.1| transcription antitermination protein nusb [Bacillus cereus Q1]
gi|225866164|ref|YP_002751542.1| N utilization substance protein B [Bacillus cereus 03BB102]
gi|227816958|ref|YP_002816967.1| transcription antitermination protein NusB [Bacillus anthracis str.
CDC 684]
gi|228916818|ref|ZP_04080383.1| N utilization substance protein B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929228|ref|ZP_04092255.1| N utilization substance protein B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935505|ref|ZP_04098323.1| N utilization substance protein B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947899|ref|ZP_04110186.1| N utilization substance protein B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229031831|ref|ZP_04187819.1| N utilization substance protein B [Bacillus cereus AH1271]
gi|229123702|ref|ZP_04252897.1| N utilization substance protein B [Bacillus cereus 95/8201]
gi|229604290|ref|YP_002868476.1| transcription antitermination protein NusB [Bacillus anthracis str.
A0248]
gi|254683946|ref|ZP_05147806.1| transcription antitermination protein NusB [Bacillus anthracis str.
CNEVA-9066]
gi|254721781|ref|ZP_05183570.1| transcription antitermination protein NusB [Bacillus anthracis str.
A1055]
gi|254736294|ref|ZP_05194000.1| transcription antitermination protein NusB [Bacillus anthracis str.
Western North America USA6153]
gi|254741332|ref|ZP_05199019.1| transcription antitermination protein NusB [Bacillus anthracis str.
Kruger B]
gi|254754034|ref|ZP_05206069.1| transcription antitermination protein NusB [Bacillus anthracis str.
Vollum]
gi|254757905|ref|ZP_05209932.1| transcription antitermination protein NusB [Bacillus anthracis str.
Australia 94]
gi|301055675|ref|YP_003793886.1| transcription antitermination protein NusB [Bacillus cereus biovar
anthracis str. CI]
gi|375286189|ref|YP_005106628.1| nutilization substance protein B [Bacillus cereus NC7401]
gi|376268079|ref|YP_005120791.1| Transcription termination protein NusB [Bacillus cereus F837/76]
gi|384182012|ref|YP_005567774.1| transcription antitermination protein NusB [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|402555684|ref|YP_006596955.1| transcription antitermination protein NusB [Bacillus cereus FRI-35]
gi|421506442|ref|ZP_15953365.1| transcription antitermination protein NusB [Bacillus anthracis str.
UR-1]
gi|421638263|ref|ZP_16078859.1| transcription antitermination protein NusB [Bacillus anthracis str.
BF1]
gi|423354679|ref|ZP_17332304.1| transcription antitermination factor NusB [Bacillus cereus IS075]
gi|423374000|ref|ZP_17351339.1| transcription antitermination factor NusB [Bacillus cereus AND1407]
gi|423400968|ref|ZP_17378141.1| transcription antitermination factor NusB [Bacillus cereus
BAG2X1-2]
gi|423478327|ref|ZP_17455042.1| transcription antitermination factor NusB [Bacillus cereus
BAG6X1-1]
gi|423550072|ref|ZP_17526399.1| transcription antitermination factor NusB [Bacillus cereus ISP3191]
gi|423566856|ref|ZP_17543103.1| transcription antitermination factor NusB [Bacillus cereus MSX-A12]
gi|423574131|ref|ZP_17550250.1| transcription antitermination factor NusB [Bacillus cereus MSX-D12]
gi|423604164|ref|ZP_17580057.1| transcription antitermination factor NusB [Bacillus cereus VD102]
gi|39931872|sp|Q81M49.1|NUSB_BACAN RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|81613591|sp|Q6HDY3.1|NUSB_BACHK RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|81686283|sp|Q635A2.1|NUSB_BACCZ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|166215664|sp|A0RIH4.1|NUSB_BACAH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|226737438|sp|B7JM33.1|NUSB_BACC0 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|226738895|sp|B7HNU5.1|NUSB_BACC7 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772611|sp|C3P7W1.1|NUSB_BACAA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772612|sp|C3LJV6.1|NUSB_BACAC RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772613|sp|C1ERQ5.1|NUSB_BACC3 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772614|sp|B9IXH5.1|NUSB_BACCQ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|30258902|gb|AAP28120.1| N utilization substance protein B [Bacillus anthracis str. Ames]
gi|47504848|gb|AAT33524.1| N utilization substance protein B [Bacillus anthracis str. 'Ames
Ancestor']
gi|47553856|gb|EAL12226.1| transcription antitermination factor nusB [Bacillus cereus G9241]
gi|49181011|gb|AAT56387.1| N utilization substance protein B [Bacillus anthracis str. Sterne]
gi|49330128|gb|AAT60774.1| N utilization substance protein B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974783|gb|AAU16333.1| N utilization substance protein B [Bacillus cereus E33L]
gi|118418598|gb|ABK87017.1| N utilization substance protein B [Bacillus thuringiensis str. Al
Hakam]
gi|164711290|gb|EDR16845.1| N utilization substance protein B [Bacillus anthracis str. A0488]
gi|167513477|gb|EDR88847.1| N utilization substance protein B [Bacillus anthracis str. A0193]
gi|167530101|gb|EDR92836.1| N utilization substance protein B [Bacillus anthracis str. A0442]
gi|170126071|gb|EDS94968.1| N utilization substance protein B [Bacillus anthracis str. A0389]
gi|170668720|gb|EDT19466.1| N utilization substance protein B [Bacillus anthracis str. A0465]
gi|172080490|gb|EDT65576.1| N utilization substance protein B [Bacillus anthracis str. A0174]
gi|190562768|gb|EDV16734.1| N utilization substance protein B [Bacillus anthracis str.
Tsiankovskii-I]
gi|195992426|gb|EDX56387.1| N utilization substance protein B [Bacillus cereus W]
gi|196022864|gb|EDX61545.1| N utilization substance protein B [Bacillus cereus 03BB108]
gi|196027581|gb|EDX66196.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
gi|206745508|gb|EDZ56907.1| N utilization substance protein B [Bacillus cereus H3081.97]
gi|217067907|gb|ACJ82157.1| N utilization substance protein B [Bacillus cereus AH187]
gi|218539371|gb|ACK91769.1| N utilization substance protein B [Bacillus cereus AH820]
gi|221241686|gb|ACM14396.1| N utilization substance protein B [Bacillus cereus Q1]
gi|225785990|gb|ACO26207.1| N utilization substance protein B [Bacillus cereus 03BB102]
gi|227003150|gb|ACP12893.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
gi|228659837|gb|EEL15482.1| N utilization substance protein B [Bacillus cereus 95/8201]
gi|228729449|gb|EEL80438.1| N utilization substance protein B [Bacillus cereus AH1271]
gi|228811886|gb|EEM58220.1| N utilization substance protein B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824257|gb|EEM70071.1| N utilization substance protein B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830518|gb|EEM76128.1| N utilization substance protein B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843005|gb|EEM88088.1| N utilization substance protein B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268698|gb|ACQ50335.1| N utilization substance protein B [Bacillus anthracis str. A0248]
gi|300377844|gb|ADK06748.1| transcription antitermination protein NusB [Bacillus cereus biovar
anthracis str. CI]
gi|324328096|gb|ADY23356.1| transcription antitermination protein NusB [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|358354716|dbj|BAL19888.1| nutilization substance protein B [Bacillus cereus NC7401]
gi|364513879|gb|AEW57278.1| Transcription termination protein NusB [Bacillus cereus F837/76]
gi|401086227|gb|EJP94454.1| transcription antitermination factor NusB [Bacillus cereus IS075]
gi|401094815|gb|EJQ02885.1| transcription antitermination factor NusB [Bacillus cereus AND1407]
gi|401189688|gb|EJQ96738.1| transcription antitermination factor NusB [Bacillus cereus ISP3191]
gi|401212700|gb|EJR19443.1| transcription antitermination factor NusB [Bacillus cereus MSX-D12]
gi|401215371|gb|EJR22088.1| transcription antitermination factor NusB [Bacillus cereus MSX-A12]
gi|401245850|gb|EJR52203.1| transcription antitermination factor NusB [Bacillus cereus VD102]
gi|401653958|gb|EJS71501.1| transcription antitermination factor NusB [Bacillus cereus
BAG2X1-2]
gi|401796894|gb|AFQ10753.1| transcription antitermination protein NusB [Bacillus cereus FRI-35]
gi|401823435|gb|EJT22582.1| transcription antitermination protein NusB [Bacillus anthracis str.
UR-1]
gi|402428489|gb|EJV60586.1| transcription antitermination factor NusB [Bacillus cereus
BAG6X1-1]
gi|403394689|gb|EJY91929.1| transcription antitermination protein NusB [Bacillus anthracis str.
BF1]
Length = 130
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|418188677|ref|ZP_12825192.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47373]
gi|419511859|ref|ZP_14051493.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA05578]
gi|353855819|gb|EHE35788.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47373]
gi|379636329|gb|EIA00887.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA05578]
Length = 120
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 31 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 88
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 89 VNEAIELAKDFSDQKSARFINGLLSQFV 116
>gi|406586236|ref|ZP_11061170.1| transcription antitermination protein NusB [Streptococcus sp.
GMD1S]
gi|419814502|ref|ZP_14339285.1| transcription antitermination protein NusB [Streptococcus sp.
GMD2S]
gi|419817789|ref|ZP_14341931.1| transcription antitermination protein NusB [Streptococcus sp.
GMD4S]
gi|404465460|gb|EKA10902.1| transcription antitermination protein NusB [Streptococcus sp.
GMD4S]
gi|404471765|gb|EKA16242.1| transcription antitermination protein NusB [Streptococcus sp.
GMD2S]
gi|404474332|gb|EKA18649.1| transcription antitermination protein NusB [Streptococcus sp.
GMD1S]
Length = 140
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLTELVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|42783301|ref|NP_980548.1| transcription antitermination protein NusB [Bacillus cereus ATCC
10987]
gi|81568850|sp|Q731B1.1|NUSB_BACC1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|42739229|gb|AAS43156.1| N utilization substance protein B [Bacillus cereus ATCC 10987]
Length = 130
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|16331086|ref|NP_441814.1| transcription antitermination protein NusB [Synechocystis sp. PCC
6803]
gi|451815243|ref|YP_007451695.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
gi|1653579|dbj|BAA18492.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
gi|451781212|gb|AGF52181.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
Length = 275
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + W++ + A ++ IL LA++E+ +G ++ INEAV+LAKR+
Sbjct: 191 IDEQLQEAMVDWQLSRLAK--IDQDILRLAIAELDYLGVPQKVAINEAVELAKRYSGQDG 248
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 249 HRFINGVLR 257
>gi|357051951|ref|ZP_09113069.1| hypothetical protein HMPREF9467_00041 [Clostridium clostridioforme
2_1_49FAA]
gi|355387219|gb|EHG34245.1| hypothetical protein HMPREF9467_00041 [Clostridium clostridioforme
2_1_49FAA]
Length = 184
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 152 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 211
P E + + + L+S EE+ E+ +L K+ + + + +++K +
Sbjct: 9 PTQEEAIAQLGQYLQSPEEDDVDESGILQVLHKVELKETDSEYLQARTANIMEK----IL 64
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDG 270
ID+ + WK + G++ EL+IL LA+ E+ ++ INEAV+LAK+F
Sbjct: 65 EIDEKLNQAAAGWKTKR-MGKV-ELTILRLALYEMLYDDAIPEKVSINEAVELAKKFGGN 122
Query: 271 AAPRIINGCLRTFV 284
+P +NG L FV
Sbjct: 123 DSPSFVNGILAKFV 136
>gi|152991103|ref|YP_001356825.1| transcription antitermination protein NusB [Nitratiruptor sp.
SB155-2]
gi|166215704|sp|A6Q4Q9.1|NUSB_NITSB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|151422964|dbj|BAF70468.1| transcription antitermination factor NusB [Nitratiruptor sp.
SB155-2]
Length = 139
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H+ ID+++ + W M++ G I E +IL L + E+ IVINEAV+LAK+
Sbjct: 56 HLDTIDEMIKKHLESWDMER-VGHI-ERAILRLGVYELFYTDLDPAIVINEAVELAKKLG 113
Query: 269 DGAAPRIINGCLRTFVRNLE 288
+P+ ING L + ++
Sbjct: 114 TDQSPKFINGVLDAIAKEVK 133
>gi|157150386|ref|YP_001451127.1| transcription antitermination protein NusB [Streptococcus gordonii
str. Challis substr. CH1]
gi|157075180|gb|ABV09863.1| transcription antitermination factor NusB [Streptococcus gordonii
str. Challis substr. CH1]
Length = 137
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV-INEAVDLAKRFCDGAA 272
DK+ + W +D+ ++E +IL L + E+ Q+V +NEA++LAK+F D +
Sbjct: 65 DKITQYLKSGWTLDRLT--LVEKNILRLGLYELLEYDETPQLVAVNEAIELAKKFSDEKS 122
Query: 273 PRIINGCLRTFV 284
+ ING L FV
Sbjct: 123 SKFINGILSQFV 134
>gi|385262369|ref|ZP_10040475.1| transcription antitermination factor NusB [Streptococcus sp. SK643]
gi|385190676|gb|EIF38116.1| transcription antitermination factor NusB [Streptococcus sp. SK643]
Length = 141
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVEKNLLRLGIFEITSFDTPQLVAVNEAIELAKNFSDQKSARFINGLLSQFV 136
>gi|407961543|dbj|BAM54783.1| transcription antitermination protein NusB [Synechocystis sp. PCC
6803]
Length = 276
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + W++ + A ++ IL LA++E+ +G ++ INEAV+LAKR+
Sbjct: 192 IDEQLQEAMVDWQLSRLAK--IDQDILRLAIAELDYLGVPQKVAINEAVELAKRYSGQDG 249
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 250 HRFINGVLR 258
>gi|387787628|ref|YP_006252696.1| transcription antitermination protein NusB [Streptococcus
pneumoniae ST556]
gi|418077962|ref|ZP_12715186.1| transcription antitermination factor NusB [Streptococcus pneumoniae
4027-06]
gi|418091069|ref|ZP_12728214.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44452]
gi|418109409|ref|ZP_12746438.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA49447]
gi|418116183|ref|ZP_12753160.1| transcription antitermination factor NusB [Streptococcus pneumoniae
6963-05]
gi|418136493|ref|ZP_12773337.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11663]
gi|418147893|ref|ZP_12784660.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13856]
gi|418161485|ref|ZP_12798176.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17328]
gi|418182050|ref|ZP_12818611.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA43380]
gi|418235846|ref|ZP_12862415.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19690]
gi|418238023|ref|ZP_12864580.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419430868|ref|ZP_13971014.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP05]
gi|419444071|ref|ZP_13984086.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19923]
gi|419452621|ref|ZP_13992596.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP03]
gi|419459306|ref|ZP_13999242.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA02270]
gi|419461580|ref|ZP_14001497.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA02714]
gi|419468343|ref|ZP_14008215.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA06083]
gi|419481482|ref|ZP_14021277.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA40563]
gi|419488547|ref|ZP_14028300.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44386]
gi|419494746|ref|ZP_14034466.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47461]
gi|419525202|ref|ZP_14064767.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA14373]
gi|421216889|ref|ZP_15673791.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070335]
gi|421265491|ref|ZP_15716375.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SPAR27]
gi|421269867|ref|ZP_15720724.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SPAR48]
gi|421274377|ref|ZP_15725209.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA52612]
gi|421289104|ref|ZP_15739856.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA54354]
gi|421302265|ref|ZP_15752930.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17484]
gi|421304419|ref|ZP_15755077.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA62331]
gi|421308884|ref|ZP_15759515.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA62681]
gi|353748984|gb|EHD29635.1| transcription antitermination factor NusB [Streptococcus pneumoniae
4027-06]
gi|353766442|gb|EHD46982.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44452]
gi|353784702|gb|EHD65122.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA49447]
gi|353791821|gb|EHD72195.1| transcription antitermination factor NusB [Streptococcus pneumoniae
6963-05]
gi|353814091|gb|EHD94318.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA13856]
gi|353831075|gb|EHE11204.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17328]
gi|353850287|gb|EHE30291.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA43380]
gi|353893775|gb|EHE73520.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19690]
gi|353895156|gb|EHE74896.1| transcription antitermination factor NusB [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353903551|gb|EHE79075.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA11663]
gi|379137370|gb|AFC94161.1| transcription antitermination protein NusB [Streptococcus
pneumoniae ST556]
gi|379534178|gb|EHY99390.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA02270]
gi|379535105|gb|EHZ00312.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA02714]
gi|379547774|gb|EHZ12910.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA06083]
gi|379559593|gb|EHZ24620.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA14373]
gi|379571764|gb|EHZ36721.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA19923]
gi|379582299|gb|EHZ47181.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA40563]
gi|379590662|gb|EHZ55500.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA44386]
gi|379597110|gb|EHZ61913.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47461]
gi|379628584|gb|EHZ93188.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP03]
gi|379632112|gb|EHZ96688.1| transcription antitermination factor NusB [Streptococcus pneumoniae
EU-NP05]
gi|395585274|gb|EJG45659.1| transcription antitermination factor NusB [Streptococcus pneumoniae
2070335]
gi|395869513|gb|EJG80628.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SPAR27]
gi|395870519|gb|EJG81632.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SPAR48]
gi|395875105|gb|EJG86186.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA52612]
gi|395890364|gb|EJH01370.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA54354]
gi|395903079|gb|EJH14011.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17484]
gi|395906810|gb|EJH17708.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA62331]
gi|395913029|gb|EJH23886.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA62681]
gi|429317372|emb|CCP37141.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae SPN034156]
Length = 120
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 31 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 88
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 89 VNEAIELAKDFSDQKSARFINGLLSQFV 116
>gi|160893229|ref|ZP_02074017.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
gi|156865312|gb|EDO58743.1| transcription antitermination factor NusB [Clostridium sp. L2-50]
Length = 144
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
Query: 202 VVDKWDA---HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITV-VGTRHQI 255
++D+ +A H+ ID+ + I + WK+ GRI EL+IL LA+ EI ++
Sbjct: 59 IIDRVEAVVSHITEIDETISGISQGWKL----GRIGKAELAILRLAVYEIKFDEDIPVKV 114
Query: 256 VINEAVDLAKRFCDGAAPRIINGCL 280
INEAV+LAK +CD A IN L
Sbjct: 115 AINEAVELAKTYCDVEAKSFINALL 139
>gi|46579608|ref|YP_010416.1| N utilization substance protein B [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602904|ref|YP_967304.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
gi|387152968|ref|YP_005701904.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1]
gi|81566935|sp|Q72CT6.1|NUSB_DESVH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|166215687|sp|A1VEL1.1|NUSB_DESVV RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|46449023|gb|AAS95675.1| N utilization substance protein B [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563133|gb|ABM28877.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
gi|311233412|gb|ADP86266.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1]
Length = 153
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
ID+V+ + W++D+ GR+ EL++L +A+ E+ + ++ INEA++L+K+F D
Sbjct: 71 IDEVIGLFSQNWRIDR-IGRV-ELTLLRIAVYEMLYRIDVPPKVAINEALELSKQFGDAN 128
Query: 272 APRIINGCLRTFVRNLEG 289
A ING L + LEG
Sbjct: 129 ARGFINGILDAAAKALEG 146
>gi|118474879|ref|YP_892479.1| transcription antitermination protein NusB [Campylobacter fetus
subsp. fetus 82-40]
gi|424821132|ref|ZP_18246170.1| Transcription antitermination protein NusB [Campylobacter fetus
subsp. venerealis NCTC 10354]
gi|166215675|sp|A0RQJ6.1|NUSB_CAMFF RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|118414105|gb|ABK82525.1| transcription antitermination factor NusB [Campylobacter fetus
subsp. fetus 82-40]
gi|342327911|gb|EGU24395.1| Transcription antitermination protein NusB [Campylobacter fetus
subsp. venerealis NCTC 10354]
Length = 131
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
FT L V+D ++++ID+ + WK+ + +E +IL L EI T+
Sbjct: 44 FTLTLYNGVLD----NLNLIDEALDAHLGKWKLGEIGA--VERAILRLGAYEIKFTNTQS 97
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
IVINEA+ LA ++ R ING L
Sbjct: 98 AIVINEAILLANELGSDSSTRFINGVL 124
>gi|228941343|ref|ZP_04103895.1| N utilization substance protein B [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954468|ref|ZP_04116493.1| N utilization substance protein B [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960450|ref|ZP_04122101.1| N utilization substance protein B [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228980868|ref|ZP_04141172.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
gi|229047878|ref|ZP_04193454.1| N utilization substance protein B [Bacillus cereus AH676]
gi|229071689|ref|ZP_04204905.1| N utilization substance protein B [Bacillus cereus F65185]
gi|229081441|ref|ZP_04213941.1| N utilization substance protein B [Bacillus cereus Rock4-2]
gi|229111657|ref|ZP_04241207.1| N utilization substance protein B [Bacillus cereus Rock1-15]
gi|229129462|ref|ZP_04258433.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
gi|229146757|ref|ZP_04275122.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
gi|229152384|ref|ZP_04280576.1| N utilization substance protein B [Bacillus cereus m1550]
gi|229163128|ref|ZP_04291084.1| N utilization substance protein B [Bacillus cereus R309803]
gi|229180462|ref|ZP_04307804.1| N utilization substance protein B [Bacillus cereus 172560W]
gi|229192394|ref|ZP_04319357.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
gi|228590971|gb|EEK48827.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
gi|228602886|gb|EEK60365.1| N utilization substance protein B [Bacillus cereus 172560W]
gi|228620534|gb|EEK77404.1| N utilization substance protein B [Bacillus cereus R309803]
gi|228630992|gb|EEK87629.1| N utilization substance protein B [Bacillus cereus m1550]
gi|228636585|gb|EEK93050.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
gi|228654067|gb|EEL09934.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
gi|228671792|gb|EEL27086.1| N utilization substance protein B [Bacillus cereus Rock1-15]
gi|228701856|gb|EEL54342.1| N utilization substance protein B [Bacillus cereus Rock4-2]
gi|228711420|gb|EEL63379.1| N utilization substance protein B [Bacillus cereus F65185]
gi|228723335|gb|EEL74704.1| N utilization substance protein B [Bacillus cereus AH676]
gi|228778804|gb|EEM27067.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
gi|228799214|gb|EEM46180.1| N utilization substance protein B [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805125|gb|EEM51719.1| N utilization substance protein B [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818269|gb|EEM64342.1| N utilization substance protein B [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 120
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V V+ +A ID+ + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 32 FLESLVVGFVENKEA----IDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 85
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 86 HNVTINEAIEIAKTFGDEESRRFINGVL 113
>gi|401684236|ref|ZP_10816119.1| transcription antitermination factor NusB [Streptococcus sp. BS35b]
gi|418975235|ref|ZP_13523144.1| transcription antitermination factor NusB [Streptococcus oralis
SK1074]
gi|383348606|gb|EID26565.1| transcription antitermination factor NusB [Streptococcus oralis
SK1074]
gi|400186541|gb|EJO20753.1| transcription antitermination factor NusB [Streptococcus sp. BS35b]
Length = 140
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLTDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|406961544|gb|EKD88227.1| N utilization substance protein B-like protein [uncultured
bacterium]
Length = 147
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
+L F+R+++ VV + +D V+ W +DQ A I++ +IL +A+ E V
Sbjct: 42 ILEFSRQIVTGVV----PIIPTLDSVIAVHAPEWPLDQVA--IIDRNILRIALWEFAVSK 95
Query: 251 -TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 292
T ++ INEA++LAK F ++ R +NG L + V +L N
Sbjct: 96 VTPVKVAINEAIELAKIFGSDSSSRFVNGVLGSLVDHLSEIQN 138
>gi|423612405|ref|ZP_17588266.1| transcription antitermination factor NusB [Bacillus cereus VD107]
gi|401245994|gb|EJR52346.1| transcription antitermination factor NusB [Bacillus cereus VD107]
Length = 130
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRH 253
T + L ++V + + +ID+ + K WK ++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKFERIS--IVDRSILRVAVYEMKYMEEVPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|306828961|ref|ZP_07462153.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
6249]
gi|304429139|gb|EFM32227.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
6249]
Length = 140
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLTELVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLGQFV 136
>gi|423457634|ref|ZP_17434431.1| transcription antitermination factor NusB [Bacillus cereus
BAG5X2-1]
gi|401148018|gb|EJQ55511.1| transcription antitermination factor NusB [Bacillus cereus
BAG5X2-1]
Length = 130
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
F L+V V+ + +ID+ + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVE----NKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|423377959|ref|ZP_17355243.1| transcription antitermination factor NusB [Bacillus cereus BAG1O-2]
gi|423389500|ref|ZP_17366726.1| transcription antitermination factor NusB [Bacillus cereus
BAG1X1-3]
gi|423417893|ref|ZP_17394982.1| transcription antitermination factor NusB [Bacillus cereus
BAG3X2-1]
gi|423441079|ref|ZP_17417985.1| transcription antitermination factor NusB [Bacillus cereus
BAG4X2-1]
gi|423448765|ref|ZP_17425644.1| transcription antitermination factor NusB [Bacillus cereus BAG5O-1]
gi|423464153|ref|ZP_17440921.1| transcription antitermination factor NusB [Bacillus cereus BAG6O-1]
gi|423533495|ref|ZP_17509913.1| transcription antitermination factor NusB [Bacillus cereus HuB2-9]
gi|423541249|ref|ZP_17517640.1| transcription antitermination factor NusB [Bacillus cereus HuB4-10]
gi|423547486|ref|ZP_17523844.1| transcription antitermination factor NusB [Bacillus cereus HuB5-5]
gi|423615478|ref|ZP_17591312.1| transcription antitermination factor NusB [Bacillus cereus VD115]
gi|423622731|ref|ZP_17598509.1| transcription antitermination factor NusB [Bacillus cereus VD148]
gi|401107064|gb|EJQ15021.1| transcription antitermination factor NusB [Bacillus cereus
BAG3X2-1]
gi|401129359|gb|EJQ37042.1| transcription antitermination factor NusB [Bacillus cereus BAG5O-1]
gi|401172437|gb|EJQ79658.1| transcription antitermination factor NusB [Bacillus cereus HuB4-10]
gi|401179207|gb|EJQ86380.1| transcription antitermination factor NusB [Bacillus cereus HuB5-5]
gi|401260015|gb|EJR66188.1| transcription antitermination factor NusB [Bacillus cereus VD115]
gi|401260851|gb|EJR67019.1| transcription antitermination factor NusB [Bacillus cereus VD148]
gi|401636225|gb|EJS53979.1| transcription antitermination factor NusB [Bacillus cereus BAG1O-2]
gi|401641591|gb|EJS59308.1| transcription antitermination factor NusB [Bacillus cereus
BAG1X1-3]
gi|402417740|gb|EJV50040.1| transcription antitermination factor NusB [Bacillus cereus
BAG4X2-1]
gi|402420420|gb|EJV52691.1| transcription antitermination factor NusB [Bacillus cereus BAG6O-1]
gi|402463714|gb|EJV95414.1| transcription antitermination factor NusB [Bacillus cereus HuB2-9]
Length = 130
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V VD + ID + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVDNKEE----IDAAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|358062413|ref|ZP_09149059.1| transcription antitermination factor NusB [Clostridium hathewayi
WAL-18680]
gi|356699542|gb|EHI61056.1| transcription antitermination factor NusB [Clostridium hathewayi
WAL-18680]
Length = 149
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 159 EEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVP 218
EE +E L EE + E E ++++S ++ + L + + V +D +
Sbjct: 23 EEKEEQLERYFEEPSEEGETPEGVEEILHSVVMSEKHEEFLKSKTEDIMRKVPELDAKID 82
Query: 219 PIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDGAAPRIIN 277
+ + WK + GR+ +L+IL LA+ E+ ++ INEAV+LAK+F +P IN
Sbjct: 83 EVAQGWKTKR-MGRV-DLTILRLALYEMLYDDEVPEKVAINEAVELAKKFGGNESPAFIN 140
Query: 278 GCLRTFVRN 286
G L V+
Sbjct: 141 GVLAKLVQG 149
>gi|239627505|ref|ZP_04670536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517651|gb|EEQ57517.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 149
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 152 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 211
P E V + D+ +S EE VL K+ + + V ++DK +
Sbjct: 21 PTQEEAVAQLDQYFQSPEEYDTDPEGVLQVLHKVELKSEDSEYLQARTVNIIDK----IP 76
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDG 270
ID + + WK + G++ EL+IL LA+ E+ ++ INEAV+LAK+F
Sbjct: 77 EIDAKLNEVAAGWKTKR-MGKV-ELTILRLALFEMLYDENIPEKVSINEAVELAKKFGGN 134
Query: 271 AAPRIINGCLRTFV 284
+P +NG L F+
Sbjct: 135 DSPAFVNGILARFI 148
>gi|419781209|ref|ZP_14307041.1| transcription antitermination factor NusB [Streptococcus oralis
SK100]
gi|383184601|gb|EIC77115.1| transcription antitermination factor NusB [Streptococcus oralis
SK100]
Length = 140
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|357031589|ref|ZP_09093532.1| NusB family protein [Gluconobacter morbifer G707]
gi|356414819|gb|EHH68463.1| NusB family protein [Gluconobacter morbifer G707]
Length = 160
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 211 HIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 270
H++ +P W + ++D P R L L A+ E+ T +I+INE +D+A F G
Sbjct: 85 HVLADTLPENWPLPRLD-PVLRAL----LRAAVYELIETDTPDRIIINEYLDVAHGFFSG 139
Query: 271 AAPRIINGCLRTFVRNLE 288
AP+++NG L T R E
Sbjct: 140 DAPKMVNGVLDTVSRRNE 157
>gi|291550246|emb|CBL26508.1| transcription antitermination factor NusB [Ruminococcus torques
L2-14]
Length = 139
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
WK +M++ IL L++ + + VG + INEAV+L K F AP ING L
Sbjct: 72 WKTTRMNKVDLSILRLAVYEMKWDDEVPVG----VAINEAVELTKTFSSDEAPSFINGVL 127
Query: 281 RTFVRNLEGT 290
R+LE T
Sbjct: 128 GKIARSLEET 137
>gi|336114335|ref|YP_004569102.1| NusB antitermination factor [Bacillus coagulans 2-6]
gi|335367765|gb|AEH53716.1| NusB antitermination factor [Bacillus coagulans 2-6]
Length = 132
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRF 267
H+ ID +V + W +D+ A +EL+IL LA E+ + INEA+++AKRF
Sbjct: 52 HLAKIDAMVSRHLENWTLDRLAK--VELNILRLAAYELMYAEDVPANVAINEALEIAKRF 109
Query: 268 CDGAAPRIINGCLRTFVRNLE 288
D + + ING L ++E
Sbjct: 110 ADEKSAKFINGVLNQMKDSIE 130
>gi|452853513|ref|YP_007495197.1| N utilization substance protein B homolog [Desulfovibrio
piezophilus]
gi|451897167|emb|CCH50046.1| N utilization substance protein B homolog [Desulfovibrio
piezophilus]
Length = 148
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
+F R L++ V DA +D + + WK+++ A ++ELSIL L++ E+
Sbjct: 58 QFARDLVLGV----DAKRTELDATIRDNSQHWKIERIA--LVELSILRLSLYEMIYTDIP 111
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ INEA++L+K F D + +NG L +NL+
Sbjct: 112 VKAAINEAIELSKTFGDEKSRSFVNGMLDGAAKNLK 147
>gi|242242793|ref|ZP_04797238.1| transcription antitermination protein NusB [Staphylococcus
epidermidis W23144]
gi|416125263|ref|ZP_11595861.1| transcription antitermination factor NusB [Staphylococcus
epidermidis FRI909]
gi|418327925|ref|ZP_12939057.1| transcription antitermination factor NusB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418614731|ref|ZP_13177693.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU118]
gi|418630624|ref|ZP_13193105.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU128]
gi|418633085|ref|ZP_13195502.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU129]
gi|420174715|ref|ZP_14681163.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM061]
gi|420178220|ref|ZP_14684553.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM057]
gi|420180028|ref|ZP_14686288.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM053]
gi|420190137|ref|ZP_14696081.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM037]
gi|420192271|ref|ZP_14698131.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM023]
gi|420199455|ref|ZP_14705133.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM031]
gi|420204438|ref|ZP_14709996.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM015]
gi|242233929|gb|EES36241.1| transcription antitermination protein NusB [Staphylococcus
epidermidis W23144]
gi|319400860|gb|EFV89079.1| transcription antitermination factor NusB [Staphylococcus
epidermidis FRI909]
gi|365232484|gb|EHM73480.1| transcription antitermination factor NusB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374819267|gb|EHR83395.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU118]
gi|374837814|gb|EHS01377.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU128]
gi|374839904|gb|EHS03411.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU129]
gi|394244619|gb|EJD89954.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM061]
gi|394246846|gb|EJD92098.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM057]
gi|394251460|gb|EJD96545.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM053]
gi|394259028|gb|EJE03898.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM037]
gi|394261482|gb|EJE06279.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM023]
gi|394272237|gb|EJE16706.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM031]
gi|394273448|gb|EJE17879.1| transcription antitermination factor NusB [Staphylococcus
epidermidis NIHLM015]
Length = 129
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 28/129 (21%)
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
T T++EA E ++ D +S L F L+ V D H ++
Sbjct: 22 TDLTIQEAIEFIKDD------------------HSDLDFDFIYWLVTGVKD----HQIVL 59
Query: 214 DKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
D + P K W +D+ + RI IL +A EI T ++V+NEAV+L K+F D
Sbjct: 60 DDTIKPHLKDWSIDRLLKSDRI----ILRMATFEILHSDTPKKVVVNEAVELTKQFSDDD 115
Query: 272 APRIINGCL 280
+ +NG L
Sbjct: 116 HYKFVNGVL 124
>gi|319937360|ref|ZP_08011767.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
gi|319807726|gb|EFW04319.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
Length = 134
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 179 LSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSI 238
LS L S+ + F+R L+ + +++ +I+K + WK ++ ++E +I
Sbjct: 34 LSEEKTLTKSEETMAFSRWLVETTLQNKESYQTLIEKHLKKGWKFERLS-----MMEKAI 88
Query: 239 LHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
L +A E+ IVINEAV AK+FCD + + ING L +
Sbjct: 89 LMIAACELLESDLPKTIVINEAVLNAKKFCDDDSYKFINGVLGQII 134
>gi|309775471|ref|ZP_07670473.1| N utilization substance protein B [Erysipelotrichaceae bacterium
3_1_53]
gi|308916767|gb|EFP62505.1| N utilization substance protein B [Erysipelotrichaceae bacterium
3_1_53]
Length = 81
Score = 46.2 bits (108), Expect = 0.019, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
IDK+ + + W D+ +E +IL +A E+ + IVI+EAV LAK++CD
Sbjct: 13 IDKINEALRQDWTFDRLG--FVEQAILLMAACELDLETAPKAIVIDEAVTLAKKYCDDET 70
Query: 273 PRIINGCL 280
R+ING L
Sbjct: 71 YRLINGVL 78
>gi|306820223|ref|ZP_07453865.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551720|gb|EFM39669.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 212
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ + + + +D D I +V+ W V ++ + ++L+++ A++EI + +
Sbjct: 120 YIKLFISSFLDNKDLIDSEISQVLSEKWTVKRLSK-----IDLALIRTAITEIKYLDIPY 174
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
++ INEA++LAK++ D + ING L+ +V
Sbjct: 175 KVAINEALELAKKYSDEKSSSFINGILKDYVN 206
>gi|262283503|ref|ZP_06061269.1| transcription antitermination protein NusB [Streptococcus sp.
2_1_36FAA]
gi|262260994|gb|EEY79694.1| transcription antitermination protein NusB [Streptococcus sp.
2_1_36FAA]
Length = 141
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV-INEAVDLAKRFCDGAA 272
DK+ + W +D+ ++E +IL L + E+ Q+V +NEA++LAK+F D +
Sbjct: 69 DKITQYLKAGWTLDRLT--LVEKNILRLGLYELLEYDETPQLVAVNEAIELAKKFSDEKS 126
Query: 273 PRIINGCLRTFV 284
+ ING L FV
Sbjct: 127 SKFINGILSQFV 138
>gi|87308019|ref|ZP_01090161.1| probable N utilization substance protein B-like [Blastopirellula
marina DSM 3645]
gi|87289101|gb|EAQ80993.1| probable N utilization substance protein B-like [Blastopirellula
marina DSM 3645]
Length = 137
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 KLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAM 243
+L +++ L+ F R LLV V H ID + + W + + A + + ++L +
Sbjct: 36 RLKHTEDLVAFGRSLLVGV----RLHRKAIDAKIEAFAENWSLARMA--VTDRNVLRIGA 89
Query: 244 SEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
EI T ++ INEAV+L+KRF +P+ +NG L
Sbjct: 90 FEILFSETPDRVAINEAVELSKRFGSKHSPQFVNGLL 126
>gi|83590364|ref|YP_430373.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
gi|119390785|sp|Q2RIA9.1|NUSB_MOOTA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|83573278|gb|ABC19830.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
Length = 145
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VG 250
+ FTR+L+ + K DA ID ++ W++++ A ++ +IL +A+ E+
Sbjct: 42 MTFTRELVEGTMAKRDA----IDAIIRKYAVGWRLERLAA--VDRNILRMALYEMQYHRE 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIE 294
T ++VINEA++LAK F + A R +NG L ++L + IE
Sbjct: 96 TPVRVVINEAIELAKNFNNEEAGRFVNGLLDNARKDLGLSEEIE 139
>gi|339448409|ref|ZP_08651965.1| transcription antitermination protein NusB [Lactobacillus
fructivorans KCTC 3543]
Length = 132
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRT 282
W +D+ + +L IL +A+ EI V T +++ INEA++LAK+FCD + ING L +
Sbjct: 71 WSIDRISKA--DLIILRIALFEIKYVEATPNKVAINEALELAKKFCDDKSRNFINGVLDS 128
Query: 283 FV 284
+
Sbjct: 129 VI 130
>gi|225025922|ref|ZP_03715114.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
gi|224956708|gb|EEG37917.1| transcription antitermination factor NusB [Eubacterium hallii DSM
3353]
Length = 133
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
W++ ++ +P EL+IL LA+ EIT + INEAV+LAK +C APR +NG
Sbjct: 74 WRLERLGKP-----ELAILRLAVYEITNDANIPTGVAINEAVELAKIYCSEEAPRFVNGV 128
Query: 280 L 280
L
Sbjct: 129 L 129
>gi|367468685|ref|ZP_09468527.1| Transcription termination protein NusB [Patulibacter sp. I11]
gi|365816240|gb|EHN11296.1| Transcription termination protein NusB [Patulibacter sp. I11]
Length = 140
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI---TVVG 250
FTR L A D H +D ++ K W +++ A LE SI+ +A+ E+ VV
Sbjct: 36 FTRSLAHATTD----HQEELDALIGQYAKGWTIERIAP--LERSIMRVALLEMLHPDVVP 89
Query: 251 TRHQI----VINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
I I+EAV+ AKRFC AP+ +NG L +R+
Sbjct: 90 GETPIPPEGAISEAVETAKRFCGSDAPKFVNGILAAVLRD 129
>gi|347761954|ref|YP_004869515.1| histone-like DNA-binding protein HU [Gluconacetobacter xylinus NBRC
3288]
gi|347580924|dbj|BAK85145.1| histone-like bacterial DNA-binding protein HU [Gluconacetobacter
xylinus NBRC 3288]
Length = 182
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDG 270
++ +++PP W + ++D P R +I+H A E+T T +++INE +D+A F G
Sbjct: 88 LLHEILPPSWPLARLD-PVLR----AIMHAAGGEMTAAEPTPARVIINEYMDIAHGFLAG 142
Query: 271 AAPRIINGCLRTFVRNL 287
PR++NG L R +
Sbjct: 143 DEPRMLNGVLDALSRRV 159
>gi|86605070|ref|YP_473833.1| transcription antitermination protein NusB [Synechococcus sp.
JA-3-3Ab]
gi|119390839|sp|Q2JQT6.1|NUSB_SYNJA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|86553612|gb|ABC98570.1| transcription antitermination factor NusB [Synechococcus sp.
JA-3-3Ab]
Length = 288
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRF 267
H ID + + W++ + GRI E IL LA+ E+ ++ + ++ INEAV+LAK++
Sbjct: 194 HKEAIDARLQGVLVGWQLKR-VGRI-ERDILRLAVVEMEILRSSPDKVAINEAVELAKKY 251
Query: 268 CDGAAPRIINGCLRTFV 284
D A +NG LR V
Sbjct: 252 GDPEAAAFVNGVLRRLV 268
>gi|376296462|ref|YP_005167692.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132]
gi|323459023|gb|EGB14888.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132]
Length = 149
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F R L+ V ++H ID+ + + WK+++ A ++ELSIL L++ E+
Sbjct: 59 FARDLVRGV----SVNLHDIDRTIEEHSQHWKIERIA--MVELSILRLSLYEMLFTDIPV 112
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA++L+K F D + +NG L
Sbjct: 113 KAAINEAIELSKTFGDDKSRSFVNGIL 139
>gi|347753248|ref|YP_004860813.1| NusB antitermination factor [Bacillus coagulans 36D1]
gi|347585766|gb|AEP02033.1| NusB antitermination factor [Bacillus coagulans 36D1]
Length = 132
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRF 267
H+ ID ++ + W +D+ A +EL+IL LA E+ + INEA+++AKRF
Sbjct: 52 HLAEIDAMISQHLENWTLDRLAK--VELNILRLAAYELMYAEDVPANVAINEALEIAKRF 109
Query: 268 CDGAAPRIINGCLRTFVRNLE 288
D + + ING L ++E
Sbjct: 110 ADEKSAKFINGVLNQMKDSIE 130
>gi|222151417|ref|YP_002560573.1| transcription antitermination protein NusB [Macrococcus
caseolyticus JCSC5402]
gi|254772646|sp|B9E6Q9.1|NUSB_MACCJ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|222120542|dbj|BAH17877.1| transcription termination factor [Macrococcus caseolyticus
JCSC5402]
Length = 130
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F +L+ V+ K + +D + P K W +++ ++ IL L+ E+
Sbjct: 42 FADELVHGVISKQNE----LDDKITPHLKSWALERLNK--IDRIILRLSAFELLYTDAPE 95
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++++NEAV+LAK+F D + + ING L ++N
Sbjct: 96 KVIVNEAVNLAKKFSDDESYKFINGVLSEIIKN 128
>gi|402311314|ref|ZP_10830262.1| transcription antitermination factor NusB [Eubacterium sp. AS15]
gi|400365460|gb|EJP18512.1| transcription antitermination factor NusB [Eubacterium sp. AS15]
Length = 212
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ + + + +D D I +V+ W V ++ + ++L+++ A++EI + +
Sbjct: 120 YIKLFISSFLDNKDLIDSEISQVLSEKWTVKRLSK-----IDLALIRTAITEIKYLDIPY 174
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
++ INEA++LAK++ D + ING L+ +V
Sbjct: 175 KVAINEALELAKKYSDEKSSSFINGILKDYVN 206
>gi|427717674|ref|YP_007065668.1| NusB antitermination factor [Calothrix sp. PCC 7507]
gi|427350110|gb|AFY32834.1| NusB antitermination factor [Calothrix sp. PCC 7507]
Length = 209
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+V ++ Q ++ IL +A++E+ + + INEAV+LAKR+ R ING L
Sbjct: 145 WQVTRLAQ-----IDRDILRIAVAEMLFLNLPDSVAINEAVELAKRYSGDEGHRFINGVL 199
Query: 281 RTF 283
R F
Sbjct: 200 RRF 202
>gi|425439793|ref|ZP_18820108.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9717]
gi|389719903|emb|CCH96330.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9717]
Length = 217
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L T
Sbjct: 157 ILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKLNET 209
>gi|392960823|ref|ZP_10326288.1| N utilization substance protein B-like protein [Pelosinus
fermentans DSM 17108]
gi|421054419|ref|ZP_15517387.1| transcription antitermination factor NusB [Pelosinus fermentans B4]
gi|421057121|ref|ZP_15520011.1| N utilization substance protein B-like protein [Pelosinus
fermentans B3]
gi|421067744|ref|ZP_15529188.1| N utilization substance protein B-like protein [Pelosinus
fermentans A12]
gi|421071281|ref|ZP_15532401.1| NusB antitermination factor [Pelosinus fermentans A11]
gi|421074466|ref|ZP_15535498.1| N utilization substance protein B-like protein [Pelosinus
fermentans JBW45]
gi|392440777|gb|EIW18437.1| transcription antitermination factor NusB [Pelosinus fermentans B4]
gi|392447197|gb|EIW24451.1| NusB antitermination factor [Pelosinus fermentans A11]
gi|392448099|gb|EIW25303.1| N utilization substance protein B-like protein [Pelosinus
fermentans A12]
gi|392454720|gb|EIW31542.1| N utilization substance protein B-like protein [Pelosinus
fermentans DSM 17108]
gi|392463676|gb|EIW39575.1| N utilization substance protein B-like protein [Pelosinus
fermentans B3]
gi|392527507|gb|EIW50601.1| N utilization substance protein B-like protein [Pelosinus
fermentans JBW45]
Length = 134
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH- 253
T++ +V AH+ ID ++ I WK+D+ G ++ +I +A+ E+ G
Sbjct: 42 TKEYAENLVSGTQAHITEIDTLIGEISNEWKIDRMPG--IDRNIARIAIYEMRF-GNEAL 98
Query: 254 --QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+VINEAV+LAK F + R +NG L + V+
Sbjct: 99 PPNVVINEAVELAKLFGTEESSRFVNGILGSLVK 132
>gi|310658653|ref|YP_003936374.1| transcription antitermination protein [[Clostridium] sticklandii]
gi|308825431|emb|CBH21469.1| transcription antitermination protein [[Clostridium] sticklandii]
Length = 133
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID ++ W + + A ++LSIL +A++EI + ++ INEA+DLAK++ D
Sbjct: 59 IDDIIQKSSTSWDIKRIAK--VDLSILRVAITEILYLSDIPDKVSINEAIDLAKKYGDEN 116
Query: 272 APRIINGCLRTFVRN 286
+ + +NG L V+N
Sbjct: 117 SYKFVNGLLGKIVKN 131
>gi|452077510|gb|AGF93467.1| NusB antitermination factor [uncultured organism]
Length = 139
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTR 252
F R++ +D+ + ID+++ W++D+ A L+ +IL +A+ E+ T
Sbjct: 42 FVREMYQGTLDQKEE----IDRMISEFAVGWEVDRLA--FLDRNILRMALYELLYYEDTP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
++V+NEA++LAK + AP+ ING L
Sbjct: 96 AEVVMNEAIELAKEYGTENAPKFINGIL 123
>gi|90406964|ref|ZP_01215155.1| N utilization substance protein B [Psychromonas sp. CNPT3]
gi|90312006|gb|EAS40100.1| N utilization substance protein B [Psychromonas sp. CNPT3]
Length = 139
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 60/105 (57%), Gaps = 12/105 (11%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIW--KVWKMDQPAGRILELSILHLAMS 244
+SK + + ++LL VV + + ID+ + P K+ +D +++++IL LAM
Sbjct: 40 FSKTDVPYFKELLAGVV----SRIETIDEKLSPYLSRKIGDVD-----MVDIAILRLAMF 90
Query: 245 EITV-VGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
E++ H++V+NEA++LAK F + + +NG L +R+L+
Sbjct: 91 ELSYRTDVPHKVVLNEAIELAKDFATDESYKFVNGVLDKALRSLK 135
>gi|386761568|ref|YP_006235203.1| transcription antitermination protein NusB [Helicobacter cinaedi
PAGU611]
gi|385146584|dbj|BAM12092.1| transcription antitermination protein NusB [Helicobacter cinaedi
PAGU611]
Length = 165
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF- 267
++ ID+ + P K W + G +E ++L L EI T +VINEA++L K +
Sbjct: 56 NLQSIDEAIIPYLKEWDFSRLGG--MEKAVLRLGAYEILYTDTDSPVVINEAIELGKMYG 113
Query: 268 CDGAAPRIINGCL 280
+ PR +NG L
Sbjct: 114 GEDNTPRFLNGVL 126
>gi|325283641|ref|YP_004256182.1| NusB antitermination factor [Deinococcus proteolyticus MRP]
gi|324315450|gb|ADY26565.1| NusB antitermination factor [Deinococcus proteolyticus MRP]
Length = 185
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F R L + WD + + + + W +Q A +L++L LA E+ H
Sbjct: 64 FARSLAEGLDMHWDEVQAALQRTI----RGWSFEQMA--QTDLNVLRLAAFEMMFTPEPH 117
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 289
VI AV +A++F + R +NG L T R+LEG
Sbjct: 118 PPVIESAVRIARKFGGEDSGRFVNGVLGTLSRSLEG 153
>gi|163941940|ref|YP_001646824.1| transcription antitermination protein NusB [Bacillus
weihenstephanensis KBAB4]
gi|229013400|ref|ZP_04170537.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
gi|229061872|ref|ZP_04199202.1| N utilization substance protein B [Bacillus cereus AH603]
gi|423368237|ref|ZP_17345669.1| transcription antitermination factor NusB [Bacillus cereus VD142]
gi|423452511|ref|ZP_17429364.1| transcription antitermination factor NusB [Bacillus cereus
BAG5X1-1]
gi|423470402|ref|ZP_17447146.1| transcription antitermination factor NusB [Bacillus cereus BAG6O-2]
gi|423489369|ref|ZP_17466051.1| transcription antitermination factor NusB [Bacillus cereus BtB2-4]
gi|423495092|ref|ZP_17471736.1| transcription antitermination factor NusB [Bacillus cereus CER057]
gi|423498114|ref|ZP_17474731.1| transcription antitermination factor NusB [Bacillus cereus CER074]
gi|423512297|ref|ZP_17488828.1| transcription antitermination factor NusB [Bacillus cereus HuA2-1]
gi|423518887|ref|ZP_17495368.1| transcription antitermination factor NusB [Bacillus cereus HuA2-4]
gi|423521958|ref|ZP_17498431.1| transcription antitermination factor NusB [Bacillus cereus HuA4-10]
gi|423558238|ref|ZP_17534540.1| transcription antitermination factor NusB [Bacillus cereus MC67]
gi|423591819|ref|ZP_17567850.1| transcription antitermination factor NusB [Bacillus cereus VD048]
gi|423598497|ref|ZP_17574497.1| transcription antitermination factor NusB [Bacillus cereus VD078]
gi|423660967|ref|ZP_17636136.1| transcription antitermination factor NusB [Bacillus cereus VDM022]
gi|423669769|ref|ZP_17644798.1| transcription antitermination factor NusB [Bacillus cereus VDM034]
gi|423674026|ref|ZP_17648965.1| transcription antitermination factor NusB [Bacillus cereus VDM062]
gi|229620056|sp|A9VGW4.1|NUSB_BACWK RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|163864137|gb|ABY45196.1| NusB antitermination factor [Bacillus weihenstephanensis KBAB4]
gi|228717433|gb|EEL69101.1| N utilization substance protein B [Bacillus cereus AH603]
gi|228747812|gb|EEL97678.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
gi|401080988|gb|EJP89268.1| transcription antitermination factor NusB [Bacillus cereus VD142]
gi|401140149|gb|EJQ47706.1| transcription antitermination factor NusB [Bacillus cereus
BAG5X1-1]
gi|401151185|gb|EJQ58637.1| transcription antitermination factor NusB [Bacillus cereus CER057]
gi|401159942|gb|EJQ67321.1| transcription antitermination factor NusB [Bacillus cereus HuA2-4]
gi|401161401|gb|EJQ68768.1| transcription antitermination factor NusB [Bacillus cereus CER074]
gi|401176620|gb|EJQ83815.1| transcription antitermination factor NusB [Bacillus cereus HuA4-10]
gi|401191506|gb|EJQ98528.1| transcription antitermination factor NusB [Bacillus cereus MC67]
gi|401231952|gb|EJR38454.1| transcription antitermination factor NusB [Bacillus cereus VD048]
gi|401236767|gb|EJR43224.1| transcription antitermination factor NusB [Bacillus cereus VD078]
gi|401298896|gb|EJS04496.1| transcription antitermination factor NusB [Bacillus cereus VDM034]
gi|401301008|gb|EJS06597.1| transcription antitermination factor NusB [Bacillus cereus VDM022]
gi|401309577|gb|EJS14910.1| transcription antitermination factor NusB [Bacillus cereus VDM062]
gi|402431605|gb|EJV63669.1| transcription antitermination factor NusB [Bacillus cereus BtB2-4]
gi|402436531|gb|EJV68561.1| transcription antitermination factor NusB [Bacillus cereus BAG6O-2]
gi|402449268|gb|EJV81105.1| transcription antitermination factor NusB [Bacillus cereus HuA2-1]
Length = 130
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V VD + ID + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVDNKEE----IDAAIRQNLKKWKLERIS--IVDRSILRVAVCEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|427418700|ref|ZP_18908883.1| NusB antitermination factor [Leptolyngbya sp. PCC 7375]
gi|425761413|gb|EKV02266.1| NusB antitermination factor [Leptolyngbya sp. PCC 7375]
Length = 237
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 184 KLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAM 243
+L K + +++++++ + H ID+ + W + + A ++ IL +A+
Sbjct: 108 QLAGRKDIQDYSQRIIIQLT----QHRDDIDQQLDSAMVGWNLKRLAR--VDRDILRIAL 161
Query: 244 SEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
+EI + +I I+EA+++AKR+ D R ING +R L
Sbjct: 162 TEIVYLAVDKRIAIDEAIEIAKRYSDEEGYRFINGVMRRVTDQL 205
>gi|427705528|ref|YP_007047905.1| NusB antitermination factor [Nostoc sp. PCC 7107]
gi|427358033|gb|AFY40755.1| NusB antitermination factor [Nostoc sp. PCC 7107]
Length = 213
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 200 VAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINE 259
+ +V + H +ID+ + W++++ A ++ IL +A++E+ + + INE
Sbjct: 121 IQIVKIVNEHRILIDEQISAALVDWQVNRLAQ--IDRDILRIAVAEMGFLNLPDSVAINE 178
Query: 260 AVDLAKRFCDGAAPRIINGCLRTF 283
AV LAKR+ R ING LR F
Sbjct: 179 AVVLAKRYSGDEGHRFINGVLRRF 202
>gi|228987373|ref|ZP_04147493.1| N utilization substance protein B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229140916|ref|ZP_04269460.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
gi|229157781|ref|ZP_04285856.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
gi|229186425|ref|ZP_04313589.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
gi|229198309|ref|ZP_04325016.1| N utilization substance protein B [Bacillus cereus m1293]
gi|386738073|ref|YP_006211254.1| N utilization substance protein B [Bacillus anthracis str. H9401]
gi|228585188|gb|EEK43299.1| N utilization substance protein B [Bacillus cereus m1293]
gi|228597052|gb|EEK54708.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
gi|228625738|gb|EEK82490.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
gi|228642492|gb|EEK98779.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
gi|228772345|gb|EEM20791.1| N utilization substance protein B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|384387925|gb|AFH85586.1| N utilization substance protein B [Bacillus anthracis str. H9401]
Length = 120
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRH 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 29 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 86
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 87 NVTINEAIEIAKTFGDEESRRFINGVL 113
>gi|158320645|ref|YP_001513152.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
gi|166918801|sp|A8MFJ3.1|NUSB_ALKOO RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|158140844|gb|ABW19156.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
Length = 138
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGA 271
ID ++ WK+++ A ++L+IL LA SEI + +++ INEA++LAK +
Sbjct: 59 IDSIIEEYSTSWKLNRIAN--VDLAILRLAFSEIIYMKDIPYRVSINEAIELAKIYGSDE 116
Query: 272 APRIINGCLRTFV 284
P +NG L +V
Sbjct: 117 TPNFVNGILGKYV 129
>gi|423069443|ref|ZP_17058229.1| transcription antitermination factor NusB [Streptococcus
intermedius F0395]
gi|355364657|gb|EHG12388.1| transcription antitermination factor NusB [Streptococcus
intermedius F0395]
Length = 141
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
++E +IL L + E+T T + INEA++L+K+F D + + ING L F+
Sbjct: 88 LVEKNILRLGLFEMTEFDTPQLVAINEAIELSKKFSDEKSSKFINGILSKFI 139
>gi|223043157|ref|ZP_03613204.1| transcription antitermination factor NusB [Staphylococcus capitis
SK14]
gi|314933698|ref|ZP_07841063.1| transcription antitermination factor NusB [Staphylococcus caprae
C87]
gi|417907952|ref|ZP_12551719.1| transcription antitermination factor NusB [Staphylococcus capitis
VCU116]
gi|222443368|gb|EEE49466.1| transcription antitermination factor NusB [Staphylococcus capitis
SK14]
gi|313653848|gb|EFS17605.1| transcription antitermination factor NusB [Staphylococcus caprae
C87]
gi|341595039|gb|EGS37717.1| transcription antitermination factor NusB [Staphylococcus capitis
VCU116]
Length = 129
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMS 244
Y L F L+ V D H ++D+ P K W +++ + RI IL +A
Sbjct: 37 YPDLDFDFINWLVTGVKD----HEAVLDEKFKPYLKDWSIERLLKSDRI----ILRMATF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
E+ T +++INEAV+L K+F D + ING L
Sbjct: 89 EMLHSDTPEKVIINEAVELTKQFSDDGHYKFINGVL 124
>gi|313144273|ref|ZP_07806466.1| transcription antitermination protein NusB [Helicobacter cinaedi
CCUG 18818]
gi|313129304|gb|EFR46921.1| transcription antitermination protein NusB [Helicobacter cinaedi
CCUG 18818]
gi|396079003|dbj|BAM32379.1| transcription antitermination protein [Helicobacter cinaedi ATCC
BAA-847]
Length = 165
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF- 267
++ ID+ + P K W + G +E ++L L EI T +VINEA++L K +
Sbjct: 56 NLQSIDEAIIPYLKEWDFSRLGG--MEKAVLRLGAYEILYTDTDSPVVINEAIELGKMYG 113
Query: 268 CDGAAPRIINGCL 280
+ PR +NG L
Sbjct: 114 GEDNTPRFLNGVL 126
>gi|402834001|ref|ZP_10882608.1| transcription antitermination factor NusB [Selenomonas sp. CM52]
gi|402279070|gb|EJU28113.1| transcription antitermination factor NusB [Selenomonas sp. CM52]
Length = 160
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 171 ESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPA 230
++A+E + Y+ L+R TR+ L A+ ++ A H WK+D+
Sbjct: 57 DAAVEEMPVETKRDYSYAASLVRGTREHLAAIDEEIAASTHD-----------WKLDRMT 105
Query: 231 GRILELSILHLAMSEITVVGTRHQ--IVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
G ++ +I+ +A+ E+ + I INEAV+LAK+F + R +NG L VR
Sbjct: 106 G--VDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKKFGTDDSSRYVNGILGGLVR 160
>gi|116618710|ref|YP_819081.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227432118|ref|ZP_03914130.1| transcription antitermination protein NusB [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|381337088|ref|YP_005174863.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|116097557|gb|ABJ62708.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227352145|gb|EEJ42359.1| transcription antitermination protein NusB [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|356645054|gb|AET30897.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 137
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 235 ELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+L IL LA+ E+T V T +++ I+EA++LAK F D + +NG L+ F R+ E TA
Sbjct: 81 DLVILRLAIYELTAVEATPYKVAIDEAIELAKTFADEDDRKFVNGVLKHFARD-EKTA 137
>gi|434391633|ref|YP_007126580.1| NusB antitermination factor [Gloeocapsa sp. PCC 7428]
gi|428263474|gb|AFZ29420.1| NusB antitermination factor [Gloeocapsa sp. PCC 7428]
Length = 211
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+V ++ RI + +L +A++EI +G ++ INEAV+LAKR+ R ING L
Sbjct: 143 WQVSRL----ARI-DRDLLRIAVAEILYLGVPDRVAINEAVELAKRYSGDDGHRFINGVL 197
Query: 281 R 281
R
Sbjct: 198 R 198
>gi|86609546|ref|YP_478308.1| transcription antitermination protein NusB [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|119390840|sp|Q2JHC7.1|NUSB_SYNJB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|86558088|gb|ABD03045.1| transcription antitermination factor NusB [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 291
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 183 PKLVY---SKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSIL 239
P+L+Y S+ + + +LL A+ H ID + W++ Q GRI E IL
Sbjct: 171 PELLYIAQSQEVRAYALQLLTAL----RTHKEAIDARLQKALVGWQL-QRVGRI-ERDIL 224
Query: 240 HLAMSEITVVGTRH-QIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
LA+ E+ ++ + ++ INEAV+LAK++ D A +NG LR V
Sbjct: 225 RLAVVEMEILASSPVKVAINEAVELAKKYGDPEAAAFVNGVLRRVV 270
>gi|116071798|ref|ZP_01469066.1| transcription antitermination protein NusB [Synechococcus sp.
BL107]
gi|116065421|gb|EAU71179.1| transcription antitermination protein NusB [Synechococcus sp.
BL107]
Length = 202
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 270
ID + + + W++ R+ ++ IL L + ++ +GT + NEAV+LA R+ D
Sbjct: 125 IDARLDQVMEGWRL----ARLPRIDRDILRLVVVDLQTMGTPAPVAFNEAVELANRYSDE 180
Query: 271 AAPRIINGCLRTF 283
R+ING LR F
Sbjct: 181 QGRRMINGVLRRF 193
>gi|418324910|ref|ZP_12936129.1| transcription antitermination factor NusB [Staphylococcus
pettenkoferi VCU012]
gi|365223573|gb|EHM64857.1| transcription antitermination factor NusB [Staphylococcus
pettenkoferi VCU012]
Length = 130
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGT 251
F L+ V D H ++D+ + P + W +D+ RI IL +A E+ T
Sbjct: 46 FINWLVTGVKD----HESVLDEKIAPYLQDWTLDRLLKTDRI----ILRMATFELMNGDT 97
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCL 280
++VINEAV+L K+F D + ING L
Sbjct: 98 PEKVVINEAVELTKQFSDDNHHKFINGVL 126
>gi|237752651|ref|ZP_04583131.1| transcription termination protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376140|gb|EEO26231.1| transcription termination protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 199
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F + L V++ H+ +D + K W ++ +E +IL L EI G
Sbjct: 45 FAKTLFNGVLE----HLEEVDLRIKHQIKNWDFERIGD--MERAILRLGAYEIIFSGMDK 98
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
IVINEA+++ K F + + + ING L +N
Sbjct: 99 AIVINEALEITKNFSNETSTKFINGILDGIAKN 131
>gi|423406392|ref|ZP_17383541.1| transcription antitermination factor NusB [Bacillus cereus
BAG2X1-3]
gi|401660386|gb|EJS77868.1| transcription antitermination factor NusB [Bacillus cereus
BAG2X1-3]
Length = 130
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V V+ +A ID + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVENKEA----IDVAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>gi|451343476|ref|ZP_21912548.1| transcription antitermination factor NusB [Eggerthia catenaformis
OT 569 = DSM 20559]
gi|449337839|gb|EMD16995.1| transcription antitermination factor NusB [Eggerthia catenaformis
OT 569 = DSM 20559]
Length = 134
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 179 LSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSI 238
+ A +L+ F +L+ V+ D ++ +I+K + W ++++ +E +I
Sbjct: 34 IKADDQLIEGARAYEFCIQLIENVLKNKDNYIQVIEKQLKKGWSFNRLNK-----MEAAI 88
Query: 239 LHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
L ++ SE+ IVINEAV AK +CD + + ING L V
Sbjct: 89 LLVSTSELLDSDLDKSIVINEAVINAKEYCDEDSYKFINGVLNDIV 134
>gi|342732332|ref|YP_004771171.1| transcription antitermination factor NusB [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|384455735|ref|YP_005668330.1| transcription antitermination protein NusB [Candidatus Arthromitus
sp. SFB-mouse-Yit]
gi|417961634|ref|ZP_12604022.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-2]
gi|417965753|ref|ZP_12607235.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-4]
gi|417966287|ref|ZP_12607678.1| N utilization substance protein [Candidatus Arthromitus sp. SFB-5]
gi|417968701|ref|ZP_12609692.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-co]
gi|418016267|ref|ZP_12655832.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372587|ref|ZP_12964679.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342329787|dbj|BAK56429.1| transcription antitermination factor NusB [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|345506602|gb|EGX28896.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984078|dbj|BAK79754.1| transcription antitermination protein NusB [Candidatus Arthromitus
sp. SFB-mouse-Yit]
gi|380332783|gb|EIA23508.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-2]
gi|380335848|gb|EIA25949.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-4]
gi|380339121|gb|EIA27912.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-co]
gi|380342256|gb|EIA30701.1| N utilization substance protein B [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|380343152|gb|EIA31561.1| N utilization substance protein [Candidatus Arthromitus sp. SFB-5]
Length = 149
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 188 SKLLLRFTRK-LLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI 246
S + +RF K + V++ + H ID ++ K WK+++ + ++LSIL LA+ E+
Sbjct: 44 SDIEMRFLNKDYCLNVLNGINIHKDEIDDLIQKNLKRWKINRISK--VDLSILRLAVYEM 101
Query: 247 TVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 292
I INEA++L K++ + ING L + R EG N
Sbjct: 102 CFDELPPNIAINEALNLTKKYSIDRSKGYINGVLDSIKRFREGNLN 147
>gi|291276400|ref|YP_003516172.1| transcription termination protein [Helicobacter mustelae 12198]
gi|290963594|emb|CBG39426.1| transcription termination protein [Helicobacter mustelae 12198]
Length = 130
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
++ ++D+ + K W+ + G +E +IL L EI IVINEA++LAK +
Sbjct: 56 NLDLLDEQITRHLKDWEFKKLGG--MERAILRLGAYEILCCQIDKPIVINEAIELAKSYG 113
Query: 269 DGAAPRIINGCLRTF 283
+ AP++ING L +
Sbjct: 114 EEMAPKLINGVLDSL 128
>gi|266620364|ref|ZP_06113299.1| transcription antitermination factor NusB [Clostridium hathewayi
DSM 13479]
gi|288868036|gb|EFD00335.1| transcription antitermination factor NusB [Clostridium hathewayi
DSM 13479]
Length = 147
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
WK +M + EL+IL LA+ EI ++ INEAV+LAKRF AP ING
Sbjct: 88 WKTKRMGKA-----ELTILRLALYEILYDEEVPEKVAINEAVELAKRFGGNEAPAFINGV 142
Query: 280 LRTFV 284
L V
Sbjct: 143 LAKLV 147
>gi|333924283|ref|YP_004497863.1| NusB antitermination factor [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749844|gb|AEF94951.1| NusB antitermination factor [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 144
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT---- 247
L F R+L++ ++ H++ ID+++ + K W++ + A ++ +I+ LA+ E+
Sbjct: 42 LEFARQLVIGTLE----HINEIDEIISRVSKEWQLSRMAN--VDRNIMRLALYEMMFRDD 95
Query: 248 VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+ G+ + INEAV+LAK F + + +NG L
Sbjct: 96 IPGS---VSINEAVELAKAFGGADSGKFVNGIL 125
>gi|386856384|ref|YP_006260561.1| N utilization substance protein B-like protein [Deinococcus
gobiensis I-0]
gi|379999913|gb|AFD25103.1| N utilization substance protein B-like protein [Deinococcus
gobiensis I-0]
Length = 159
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F R L+ + D H ID + + W DQ A +L++L LA E+
Sbjct: 62 LDFARDLVRGLGD----HRDEIDDTLHRTIRGWTFDQMA--QTDLNVLRLATFEMLHTDE 115
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEA 295
H VI AV +A++F + R +NG L RNL E+
Sbjct: 116 PHPPVIESAVRIARKFGGDDSGRFVNGVLANLSRNLAAQGRAES 159
>gi|260772216|ref|ZP_05881132.1| transcription termination protein NusB [Vibrio metschnikovii CIP
69.14]
gi|260611355|gb|EEX36558.1| transcription termination protein NusB [Vibrio metschnikovii CIP
69.14]
Length = 156
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE LSAP V + R LLV VV
Sbjct: 26 ITKENVATIEEQFLSGGKYDEEEHHAAEPALSAPQTDV------TYFRDLLVGVVLN--- 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HTELDSKLRPFVSRPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEDSHKFVNGVL 145
>gi|425438301|ref|ZP_18818706.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9432]
gi|389676555|emb|CCH94442.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9432]
Length = 217
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L EA K
Sbjct: 157 ILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKLN-----EAEK 211
Query: 298 A 298
A
Sbjct: 212 A 212
>gi|322386860|ref|ZP_08060484.1| N utilization substance protein B [Streptococcus cristatus ATCC
51100]
gi|417922142|ref|ZP_12565631.1| transcription antitermination factor NusB [Streptococcus cristatus
ATCC 51100]
gi|321269142|gb|EFX52078.1| N utilization substance protein B [Streptococcus cristatus ATCC
51100]
gi|342833030|gb|EGU67318.1| transcription antitermination factor NusB [Streptococcus cristatus
ATCC 51100]
Length = 145
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
++E +IL L + E+T T ++ +NEA++L+K+F D + + ING L F+
Sbjct: 89 LVEKNILRLGIFEMTEFDTPERVAVNEAIELSKQFSDEKSSKFINGILSQFI 140
>gi|374672738|dbj|BAL50629.1| transcription termination protein NusB [Lactococcus lactis subsp.
lactis IO-1]
Length = 323
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
+L+ V++K + I K + W ++ ++E +IL ++ EI T +
Sbjct: 240 QLVDGVLNKKEDLEANISKYLAKTWSFSRL-----TLVEQAILQVSSYEILYTETPDVVA 294
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+NEAV+L+K F D + R ING L F++
Sbjct: 295 VNEAVELSKDFSDEKSSRFINGVLTNFLK 323
>gi|302670343|ref|YP_003830303.1| transcription antitermination factor NusB [Butyrivibrio
proteoclasticus B316]
gi|302394816|gb|ADL33721.1| transcription antitermination factor NusB [Butyrivibrio
proteoclasticus B316]
Length = 133
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 170 EESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQP 229
EE + E+ + L +SK + R + DK + IDK + W+ +
Sbjct: 23 EEMMEQEELFTTEGDLEFSKSDADYIRDKYEKIADKLEE----IDKAINEKAVGWETSRM 78
Query: 230 AGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
A ++L+I+ LA+ EI T + INEAV+LAK+F +P +NG L F +
Sbjct: 79 AK--VDLTIIRLAVYEIKFDETVPTGVAINEAVELAKKFGQDGSPAFVNGVLAKFAQ 133
>gi|390440141|ref|ZP_10228492.1| N utilization substance protein B homolog [Microcystis sp. T1-4]
gi|425456932|ref|ZP_18836638.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9807]
gi|389801850|emb|CCI19041.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9807]
gi|389836425|emb|CCI32618.1| N utilization substance protein B homolog [Microcystis sp. T1-4]
Length = 217
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L EA K
Sbjct: 157 ILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKLN-----EAEK 211
Query: 298 A 298
A
Sbjct: 212 A 212
>gi|425446478|ref|ZP_18826481.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9443]
gi|389733262|emb|CCI02935.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9443]
Length = 217
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L EA K
Sbjct: 157 ILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKLN-----EAEK 211
Query: 298 A 298
A
Sbjct: 212 A 212
>gi|229019401|ref|ZP_04176224.1| N utilization substance protein B [Bacillus cereus AH1273]
gi|229025645|ref|ZP_04182051.1| N utilization substance protein B [Bacillus cereus AH1272]
gi|229098654|ref|ZP_04229594.1| N utilization substance protein B [Bacillus cereus Rock3-29]
gi|229104810|ref|ZP_04235471.1| N utilization substance protein B [Bacillus cereus Rock3-28]
gi|229117679|ref|ZP_04247049.1| N utilization substance protein B [Bacillus cereus Rock1-3]
gi|407706710|ref|YP_006830295.1| DNA primase [Bacillus thuringiensis MC28]
gi|228665771|gb|EEL21243.1| N utilization substance protein B [Bacillus cereus Rock1-3]
gi|228678683|gb|EEL32899.1| N utilization substance protein B [Bacillus cereus Rock3-28]
gi|228684733|gb|EEL38671.1| N utilization substance protein B [Bacillus cereus Rock3-29]
gi|228735643|gb|EEL86232.1| N utilization substance protein B [Bacillus cereus AH1272]
gi|228741871|gb|EEL92048.1| N utilization substance protein B [Bacillus cereus AH1273]
gi|407384395|gb|AFU14896.1| N utilization substance protein B [Bacillus thuringiensis MC28]
Length = 120
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V VD + ID + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 32 FLESLVVGFVDNKEE----IDAAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 85
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 86 HNVTINEAIEIAKTFGDEESRRFINGVL 113
>gi|385838867|ref|YP_005876497.1| Transcription termination protein NusB [Lactococcus lactis subsp.
cremoris A76]
gi|414073910|ref|YP_006999127.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris UC509.9]
gi|358750095|gb|AEU41074.1| Transcription termination protein NusB [Lactococcus lactis subsp.
cremoris A76]
gi|413973830|gb|AFW91294.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 299
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
++E +IL ++ EI T + + +NEA++L+K F D + R ING L F++
Sbjct: 245 LVEQAILQVSTYEILFTDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTNFLK 297
>gi|228475963|ref|ZP_04060671.1| transcription antitermination factor NusB [Staphylococcus hominis
SK119]
gi|314936353|ref|ZP_07843700.1| transcription antitermination factor NusB [Staphylococcus hominis
subsp. hominis C80]
gi|418620065|ref|ZP_13182876.1| transcription antitermination factor NusB [Staphylococcus hominis
VCU122]
gi|228269786|gb|EEK11266.1| transcription antitermination factor NusB [Staphylococcus hominis
SK119]
gi|313654972|gb|EFS18717.1| transcription antitermination factor NusB [Staphylococcus hominis
subsp. hominis C80]
gi|374823628|gb|EHR87623.1| transcription antitermination factor NusB [Staphylococcus hominis
VCU122]
Length = 128
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMS 244
Y L F L+ V D H ++D+ + P K W + R+L+ IL +A
Sbjct: 37 YPDLDFEFIHWLVTGVKD----HEQVLDQSIEPKLKDWSI----QRLLKTDRIILRMATF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
E+ T +++INEAV+L K+F D + ING L
Sbjct: 89 ELLHSDTPPKVIINEAVELTKQFSDEGHYKFINGVL 124
>gi|218282376|ref|ZP_03488658.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
gi|218216662|gb|EEC90200.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
Length = 125
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W D+ + +LE +IL ++ EI T +VINEA+ LAK++CD + +++NG L
Sbjct: 68 WDFDRLS--MLEQAILLISFQEILANDTPKAVVINEAITLAKKYCDDNSYKLLNGVL 122
>gi|229174859|ref|ZP_04302379.1| N utilization substance protein B [Bacillus cereus MM3]
gi|228608527|gb|EEK65829.1| N utilization substance protein B [Bacillus cereus MM3]
Length = 114
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V V+ + +ID+ + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 26 FLESLVVGFVE----NKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 79
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 80 HNVTINEAIEIAKTFGDEESRRFINGVL 107
>gi|359461088|ref|ZP_09249651.1| transcription antitermination protein NusB [Acaryochloris sp. CCMEE
5410]
Length = 205
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+T L+ AV D ID+++ W++ + A ++ ++L LA++E+ + +
Sbjct: 115 YTLDLIAAVHHHRDE----IDQILETSLVDWQLHRLAH--IDANLLRLAVAEMKYLDIPN 168
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
Q+ INE+V+LAK++ R ING LR R +
Sbjct: 169 QVAINESVELAKKYSAEEGHRFINGVLRRVTRQI 202
>gi|229075890|ref|ZP_04208866.1| N utilization substance protein B [Bacillus cereus Rock4-18]
gi|228707205|gb|EEL59402.1| N utilization substance protein B [Bacillus cereus Rock4-18]
Length = 114
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V VD + ID + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 26 FLESLVVGFVDNKEE----IDAAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 79
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 80 HNVTINEAIEIAKTFGDEESRRFINGVL 107
>gi|95929563|ref|ZP_01312305.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
gi|95134260|gb|EAT15917.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
Length = 152
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 177 EVLSAP--PKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRIL 234
+VL P P+ S ++ F+ +L+ V + H+ ID ++ K W +D+ L
Sbjct: 43 DVLGEPEEPQSPLSDDVIFFSEQLVKGVYE----HLEEIDAMLLDTSKNWALDRMPR--L 96
Query: 235 ELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+LS++ +A E+ V T +VINEA+++AKR+ P +NG L
Sbjct: 97 DLSLMRMACYELIYVDKTPTNVVINEAIEIAKRYGTKDTPAFLNGVL 143
>gi|440756007|ref|ZP_20935208.1| transcription antitermination factor NusB [Microcystis aeruginosa
TAIHU98]
gi|440173229|gb|ELP52687.1| transcription antitermination factor NusB [Microcystis aeruginosa
TAIHU98]
Length = 201
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L EA K
Sbjct: 141 ILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKLN-----EAEK 195
Query: 298 A 298
A
Sbjct: 196 A 196
>gi|54307996|ref|YP_129016.1| transcription antitermination protein NusB [Photobacterium
profundum SS9]
gi|81615463|sp|Q6LU11.1|NUSB_PHOPR RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|46912422|emb|CAG19214.1| Putative NusB protein [Photobacterium profundum SS9]
Length = 151
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRSD----EEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T V E ++ SD EEE +A +L+AP L + LL VV
Sbjct: 22 ITKGNVAEIEQQFLSDDKFEEEEHQADAPILAAP------HTDLNYFHDLLNGVVQN--- 72
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + + +DQ +EL++L LAM E+T +++VINEA++LAK
Sbjct: 73 HQELDSKMRPYLSRPLQDLDQ-----MELALLRLAMYEMTKREDVPYKVVINEAIELAKI 127
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 128 FGAEDSHKFVNGVL 141
>gi|207092122|ref|ZP_03239909.1| transcription antitermination protein NusB [Helicobacter pylori
HPKX_438_AG0C1]
gi|384896753|ref|YP_005772181.1| transcription antitermination protein NusB [Helicobacter pylori
Lithuania75]
gi|420412870|ref|ZP_14911995.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4099]
gi|317011858|gb|ADU82466.1| transcription antitermination protein NusB [Helicobacter pylori
Lithuania75]
gi|393030631|gb|EJB31709.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4099]
Length = 138
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + R L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSRKL 132
>gi|406984878|gb|EKE05785.1| hypothetical protein ACD_19C00176G0007 [uncultured bacterium]
Length = 119
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 219 PIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIING 278
P W + K+++ ++L+ILHLA+ E+ T +++I+EAV+LAK F ++ +NG
Sbjct: 53 PTWPIDKINK-----IDLAILHLAIYELKNGDTPPKVIIDEAVELAKEFGSESSGPFVNG 107
Query: 279 CLRT 282
L T
Sbjct: 108 VLGT 111
>gi|425452584|ref|ZP_18832401.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 7941]
gi|389765553|emb|CCI08578.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 7941]
Length = 217
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 237 SILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEAS 296
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L EA
Sbjct: 156 DILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKLN-----EAE 210
Query: 297 KA 298
KA
Sbjct: 211 KA 212
>gi|425462991|ref|ZP_18842454.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9808]
gi|443667848|ref|ZP_21134084.1| transcription antitermination factor NusB [Microcystis aeruginosa
DIANCHI905]
gi|159027396|emb|CAO86880.1| nusB [Microcystis aeruginosa PCC 7806]
gi|389823815|emb|CCI27723.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9808]
gi|443330948|gb|ELS45632.1| transcription antitermination factor NusB [Microcystis aeruginosa
DIANCHI905]
Length = 217
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L EA K
Sbjct: 157 ILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKLN-----EAEK 211
Query: 298 A 298
A
Sbjct: 212 A 212
>gi|125624663|ref|YP_001033146.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris MG1363]
gi|389855033|ref|YP_006357277.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris NZ9000]
gi|124493471|emb|CAL98448.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071455|gb|ADJ60855.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 325
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
++E +IL ++ EI T + + +NEA++L+K F D + R ING L F++
Sbjct: 271 LVEQAILQVSTYEILFTDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTNFLK 323
>gi|420414495|ref|ZP_14913613.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4053]
gi|421717558|ref|ZP_16156860.1| transcription antitermination factor NusB [Helicobacter pylori
R038b]
gi|393034737|gb|EJB35790.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4053]
gi|407223065|gb|EKE92858.1| transcription antitermination factor NusB [Helicobacter pylori
R038b]
Length = 138
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + R L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSRKL 132
>gi|116511490|ref|YP_808706.1| transcription termination factor [Lactococcus lactis subsp.
cremoris SK11]
gi|116107144|gb|ABJ72284.1| Transcription termination factor [Lactococcus lactis subsp.
cremoris SK11]
Length = 325
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 233 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
++E +IL ++ EI T + + +NEA++L+K F D + R ING L F++
Sbjct: 271 LVEQAILQVSTYEILFTDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTNFLK 323
>gi|157738073|ref|YP_001490757.1| transcription antitermination protein NusB [Arcobacter butzleri
RM4018]
gi|315636425|ref|ZP_07891669.1| transcription antitermination factor NusB [Arcobacter butzleri
JV22]
gi|384156392|ref|YP_005539207.1| transcription antitermination protein NusB [Arcobacter butzleri
ED-1]
gi|166918802|sp|A8EVW4.1|NUSB_ARCB4 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|157699927|gb|ABV68087.1| transcription termination factor NusB [Arcobacter butzleri RM4018]
gi|315479291|gb|EFU69980.1| transcription antitermination factor NusB [Arcobacter butzleri
JV22]
gi|345469946|dbj|BAK71397.1| transcription antitermination protein NusB [Arcobacter butzleri
ED-1]
Length = 131
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E SIL LA+ EI I+INEA++L+KR AP+ ING L V+
Sbjct: 79 VEKSILRLAIYEILFESLPKAIIINEAIELSKRLASDGAPKFINGLLDKIVK 130
>gi|283782240|ref|YP_003372995.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
gi|283440693|gb|ADB19135.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
Length = 136
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
W +D+ A + + ++L L EI T ++ INEAV+LAKRF +P+ +NG L F
Sbjct: 72 WTLDRMA--VTDRNVLRLGAYEILHTQTPQRVAINEAVELAKRFGARQSPQFVNGILDRF 129
Query: 284 V 284
+
Sbjct: 130 L 130
>gi|444374749|ref|ZP_21174053.1| transcription antitermination protein NusB [Helicobacter pylori
A45]
gi|443620801|gb|ELT81243.1| transcription antitermination protein NusB [Helicobacter pylori
A45]
Length = 138
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + R L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSRKL 132
>gi|428317893|ref|YP_007115775.1| NusB antitermination factor [Oscillatoria nigro-viridis PCC 7112]
gi|428241573|gb|AFZ07359.1| NusB antitermination factor [Oscillatoria nigro-viridis PCC 7112]
Length = 210
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQ 254
R + ++ K A+ ID+++ W++++ ++ I+ +A++E+ +G Q
Sbjct: 113 VRTYALQILTKVSANRVQIDELLSEALVDWQIERLPR--IDRDIMRIAIAEMLYLGLPEQ 170
Query: 255 IVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEAV LAKR+ R ING LR V
Sbjct: 171 VSVNEAVQLAKRYSGDEGHRFINGVLRRVV 200
>gi|385216760|ref|YP_005778236.1| transcription antitermination protein NusB [Helicobacter pylori
F16]
gi|317176809|dbj|BAJ54598.1| transcription antitermination protein NusB [Helicobacter pylori
F16]
Length = 138
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K + ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEKLNE----IDALIEPHLKDWDFKRLGS--MEKAILRLGTYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|188526813|ref|YP_001909500.1| transcription antitermination protein NusB [Helicobacter pylori
Shi470]
gi|217033802|ref|ZP_03439227.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
gi|254778739|ref|YP_003056844.1| transcription antitermination protein NusB [Helicobacter pylori
B38]
gi|384888658|ref|YP_005762960.1| transcription antitermination factor NusB [Helicobacter pylori
v225d]
gi|384892009|ref|YP_005766102.1| transcription antitermination protein NusB [Helicobacter pylori
Cuz20]
gi|384893617|ref|YP_005767666.1| transcription antitermination protein NusB [Helicobacter pylori
Sat464]
gi|384895376|ref|YP_005769365.1| transcription antitermination factor NusB [Helicobacter pylori 35A]
gi|384898368|ref|YP_005773747.1| transcription antitermination protein NusB [Helicobacter pylori
F30]
gi|385219874|ref|YP_005781346.1| transcription antitermination protein NusB [Helicobacter pylori
India7]
gi|385224643|ref|YP_005784568.1| transcription antitermination factor NusB [Helicobacter pylori 83]
gi|385226253|ref|YP_005786177.1| transcription antitermination protein NusB [Helicobacter pylori
SNT49]
gi|385227774|ref|YP_005787707.1| transcription antitermination protein NusB [Helicobacter pylori
Puno120]
gi|385248497|ref|YP_005776716.1| transcription antitermination protein NusB [Helicobacter pylori
F57]
gi|386745527|ref|YP_006218744.1| transcription antitermination protein NusB [Helicobacter pylori
HUP-B14]
gi|386750445|ref|YP_006223665.1| transcription antitermination protein NusB [Helicobacter pylori
Shi417]
gi|386753520|ref|YP_006226738.1| transcription antitermination protein NusB [Helicobacter pylori
Shi112]
gi|387781699|ref|YP_005792412.1| N utilization substance protein B/transcriptional antitermination
factor [Helicobacter pylori 51]
gi|420394547|ref|ZP_14893779.1| transcription antitermination factor NusB [Helicobacter pylori
CPY1124]
gi|420397823|ref|ZP_14897039.1| transcription antitermination factor NusB [Helicobacter pylori
CPY1313]
gi|420398053|ref|ZP_14897266.1| transcription antitermination factor NusB [Helicobacter pylori
CPY1962]
gi|420400924|ref|ZP_14900123.1| transcription antitermination factor NusB [Helicobacter pylori
CPY3281]
gi|420402720|ref|ZP_14901908.1| transcription antitermination factor NusB [Helicobacter pylori
CPY6081]
gi|420403087|ref|ZP_14902273.1| transcription antitermination factor NusB [Helicobacter pylori
CPY6261]
gi|420405942|ref|ZP_14905115.1| transcription antitermination factor NusB [Helicobacter pylori
CPY6271]
gi|420407739|ref|ZP_14906903.1| transcription antitermination factor NusB [Helicobacter pylori
CPY6311]
gi|420424578|ref|ZP_14923642.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-5]
gi|420426191|ref|ZP_14925247.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-9]
gi|420434889|ref|ZP_14933889.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-27]
gi|420447902|ref|ZP_14946788.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-43]
gi|420467790|ref|ZP_14966538.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-9]
gi|420476657|ref|ZP_14975320.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-23]
gi|420494876|ref|ZP_14993443.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-16]
gi|420495083|ref|ZP_14993648.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-23]
gi|420496872|ref|ZP_14995433.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-25]
gi|420500453|ref|ZP_14998999.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-30]
gi|420505430|ref|ZP_15003946.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-74]
gi|420527230|ref|ZP_15025625.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-25c]
gi|420529056|ref|ZP_15027444.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-25d]
gi|421715659|ref|ZP_16154973.1| transcription antitermination factor NusB [Helicobacter pylori
R036d]
gi|238691960|sp|B2UW05.1|NUSB_HELPS RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|188143053|gb|ACD47470.1| transcription antitermination protein NusB [Helicobacter pylori
Shi470]
gi|216943700|gb|EEC23143.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
gi|254000650|emb|CAX28559.1| N utilization substance protein B homolog (Protein nusB),
transcriptional antitermination factor [Helicobacter
pylori B38]
gi|261837458|gb|ACX97224.1| N utilization substance protein B/transcriptional antitermination
factor [Helicobacter pylori 51]
gi|297379224|gb|ADI34111.1| transcription antitermination factor NusB [Helicobacter pylori
v225d]
gi|308061306|gb|ADO03194.1| transcription antitermination protein NusB [Helicobacter pylori
Cuz20]
gi|308062871|gb|ADO04758.1| transcription antitermination protein NusB [Helicobacter pylori
Sat464]
gi|315585992|gb|ADU40373.1| transcription antitermination factor NusB [Helicobacter pylori 35A]
gi|317008681|gb|ADU79261.1| transcription antitermination protein NusB [Helicobacter pylori
India7]
gi|317178310|dbj|BAJ56098.1| transcription antitermination protein NusB [Helicobacter pylori
F30]
gi|317181291|dbj|BAJ59075.1| transcription antitermination protein NusB [Helicobacter pylori
F57]
gi|332672789|gb|AEE69606.1| transcription antitermination factor NusB [Helicobacter pylori 83]
gi|344331166|gb|AEN16196.1| transcription antitermination protein NusB [Helicobacter pylori
SNT49]
gi|344334212|gb|AEN14656.1| transcription antitermination protein NusB [Helicobacter pylori
Puno120]
gi|384551776|gb|AFI06724.1| transcription antitermination protein NusB [Helicobacter pylori
HUP-B14]
gi|384556703|gb|AFH97171.1| transcription antitermination protein NusB [Helicobacter pylori
Shi417]
gi|384559778|gb|AFI00245.1| transcription antitermination protein NusB [Helicobacter pylori
Shi112]
gi|393011368|gb|EJB12556.1| transcription antitermination factor NusB [Helicobacter pylori
CPY1313]
gi|393014727|gb|EJB15898.1| transcription antitermination factor NusB [Helicobacter pylori
CPY1962]
gi|393015876|gb|EJB17039.1| transcription antitermination factor NusB [Helicobacter pylori
CPY1124]
gi|393016187|gb|EJB17347.1| transcription antitermination factor NusB [Helicobacter pylori
CPY6081]
gi|393016532|gb|EJB17691.1| transcription antitermination factor NusB [Helicobacter pylori
CPY3281]
gi|393020253|gb|EJB21392.1| transcription antitermination factor NusB [Helicobacter pylori
CPY6261]
gi|393021197|gb|EJB22331.1| transcription antitermination factor NusB [Helicobacter pylori
CPY6311]
gi|393021761|gb|EJB22891.1| transcription antitermination factor NusB [Helicobacter pylori
CPY6271]
gi|393043165|gb|EJB44169.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-5]
gi|393044911|gb|EJB45901.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-9]
gi|393052657|gb|EJB53603.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-27]
gi|393061963|gb|EJB62823.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-43]
gi|393081910|gb|EJB82627.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-9]
gi|393095082|gb|EJB95687.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-23]
gi|393110031|gb|EJC10559.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-16]
gi|393113216|gb|EJC13735.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-23]
gi|393114569|gb|EJC15084.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-25]
gi|393116962|gb|EJC17466.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-74]
gi|393135197|gb|EJC35599.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-25c]
gi|393138170|gb|EJC38552.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-25d]
gi|393152220|gb|EJC52521.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-30]
gi|407214167|gb|EKE84016.1| transcription antitermination factor NusB [Helicobacter pylori
R036d]
Length = 138
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|428202782|ref|YP_007081371.1| NusB antitermination factor [Pleurocapsa sp. PCC 7327]
gi|427980214|gb|AFY77814.1| NusB antitermination factor [Pleurocapsa sp. PCC 7327]
Length = 212
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + W++++ ++ IL +A++E+ + ++ INEAV+LAKR+ D
Sbjct: 134 IDRQIEASLLDWQLNRLPR--IDRDILRIAVAEMLFLDIPQKVAINEAVELAKRYSDEDG 191
Query: 273 PRIINGCLRTFVRNLEGTA 291
R ING LR L+ A
Sbjct: 192 YRFINGVLRRVSDRLKAEA 210
>gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB [Helicobacter pylori
26695]
gi|386755085|ref|YP_006228302.1| transcription antitermination protein NusB [Helicobacter pylori
PeCan18]
gi|387907369|ref|YP_006337703.1| transcription antitermination protein NusB [Helicobacter pylori
XZ274]
gi|410023237|ref|YP_006892490.1| transcription antitermination protein NusB [Helicobacter pylori
Rif1]
gi|410501006|ref|YP_006935533.1| transcription antitermination protein NusB [Helicobacter pylori
Rif2]
gi|410681523|ref|YP_006933925.1| transcription antitermination protein NusB [Helicobacter pylori
26695]
gi|419416212|ref|ZP_13956788.1| transcription antitermination protein NusB [Helicobacter pylori
P79]
gi|420407993|ref|ZP_14907152.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4216]
gi|7387970|sp|O24853.1|NUSB_HELPY RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|2313078|gb|AAD07074.1| predicted coding region HP0001 [Helicobacter pylori 26695]
gi|384375573|gb|EIE30849.1| transcription antitermination protein NusB [Helicobacter pylori
P79]
gi|384561343|gb|AFI01809.1| transcription antitermination protein NusB [Helicobacter pylori
PeCan18]
gi|387572304|gb|AFJ81012.1| transcription antitermination protein NusB [Helicobacter pylori
XZ274]
gi|393025478|gb|EJB26584.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4216]
gi|409893164|gb|AFV41222.1| transcription antitermination protein NusB [Helicobacter pylori
26695]
gi|409894894|gb|AFV42816.1| transcription antitermination protein NusB [Helicobacter pylori
Rif1]
gi|409896557|gb|AFV44411.1| transcription antitermination protein NusB [Helicobacter pylori
Rif2]
Length = 138
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|434397479|ref|YP_007131483.1| NusB antitermination factor [Stanieria cyanosphaera PCC 7437]
gi|428268576|gb|AFZ34517.1| NusB antitermination factor [Stanieria cyanosphaera PCC 7437]
Length = 213
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQ 254
R+ + ++ H I+ + + W++++ ++ IL +A++E+ + +
Sbjct: 116 VREYAIEIISTVCQHRQQIETQIETVLVAWQLNRLPK--IDRDILRIAVAEMLFLDVPVK 173
Query: 255 IVINEAVDLAKRFCDGAAPRIINGCLR 281
+ INEAV+LAKR+ D R ING LR
Sbjct: 174 VAINEAVELAKRYSDEEGYRFINGVLR 200
>gi|15807061|ref|NP_295790.1| N-utilization substance protein B [Deinococcus radiodurans R1]
gi|22095974|sp|Q9RSQ7.1|NUSB_DEIRA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|6459861|gb|AAF11617.1|AE002043_2 N-utilization substance protein B [Deinococcus radiodurans R1]
Length = 192
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F +L+ + + H ID V+ + W DQ A +L++L LA E+
Sbjct: 62 LHFAEELVTGL----ERHREAIDDVLHRTIRGWTFDQMAQ--TDLNVLRLATYELMYTPE 115
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
H VI AV +A++F + R +NG L RNL
Sbjct: 116 PHPPVIESAVRIARKFGGDDSGRFVNGVLAGLSRNL 151
>gi|425469700|ref|ZP_18848615.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9701]
gi|389880439|emb|CCI38822.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9701]
Length = 217
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L
Sbjct: 157 ILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKL 206
>gi|425790180|ref|YP_007018097.1| transcription antitermination protein NusB [Helicobacter pylori
Aklavik86]
gi|425628495|gb|AFX89035.1| transcription antitermination protein NusB [Helicobacter pylori
Aklavik86]
Length = 138
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|282899369|ref|ZP_06307337.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
gi|281195736|gb|EFA70665.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
Length = 213
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPI---WKVWKMDQPAGRILELSILHLAMSEITVVG 250
+ ++++V V D + I+D+++ W+V ++ Q ++ IL +A++E+ +
Sbjct: 123 YAKEIVVTV----DENRPILDQIISQALVDWQVTRLAQ-----IDRDILQIAVAEMKFME 173
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
I INEAV+LAKR+ R ING LR +
Sbjct: 174 VPPSIAINEAVELAKRYSGDDGHRFINGVLRRVI 207
>gi|226311922|ref|YP_002771816.1| N utilization substance protein B [Brevibacillus brevis NBRC
100599]
gi|226094870|dbj|BAH43312.1| N utilization substance protein B [Brevibacillus brevis NBRC
100599]
Length = 137
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
ID + + W++++ A ++ +IL LA EI T ++V+NEA+++AK F D
Sbjct: 59 IDAEIKKYLRGWQLERIAN--VDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAKLFSDEQ 116
Query: 272 APRIINGCLRTFVRNLE 288
+ R ING L +F+++ E
Sbjct: 117 SHRYINGVLSSFLQSRE 133
>gi|160938277|ref|ZP_02085632.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
BAA-613]
gi|158438650|gb|EDP16407.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
BAA-613]
Length = 272
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 152 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 211
P E + + + +S EE+ E+ +L K+ + + + +++K +
Sbjct: 70 PTQEEAIAQLGQYFQSPEEDDVDESGILQVLHKVELKEADSEYLQARTANIMEK----IP 125
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDG 270
ID+ + WK + G++ EL+IL LA+ E + ++ INEAV+LAK+F
Sbjct: 126 EIDEKLNQAAAGWKTKR-MGKV-ELTILRLALYEMLHDDAIPEKVSINEAVELAKKFGGN 183
Query: 271 AAPRIINGCLRTFV 284
+P +NG L FV
Sbjct: 184 DSPSFVNGILAKFV 197
>gi|375264659|ref|YP_005022102.1| transcription antitermination protein NusB [Vibrio sp. EJY3]
gi|369839983|gb|AEX21127.1| transcription antitermination protein NusB [Vibrio sp. EJY3]
Length = 151
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 153 VTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI 212
+T E V + +E S ++ E E+ ++ P L + + + R+LL VV +H +
Sbjct: 22 ITKENVAKIEEQFLSGDKYD--EEELHASEPALAAPETDVEYFRELLGGVVL---SHAEL 76
Query: 213 IDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDG 270
K+ P I + + +D ++EL++L LAM E+T +++VINEA++LAK F
Sbjct: 77 DSKIRPYISRPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 131
Query: 271 AAPRIINGCL 280
+ + +NG L
Sbjct: 132 DSHKFVNGVL 141
>gi|229135004|ref|ZP_04263810.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
gi|228648506|gb|EEL04535.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
Length = 120
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V VD + ID + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 32 FLESLVVGFVDNKEE----IDAAIRQNLKKWKLERIS--IVDRSILRVAVCEMKYMEEIP 85
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 86 HNVTINEAIEIAKTFGDEESRRFINGVL 113
>gi|420489999|ref|ZP_14988585.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-13]
gi|420523838|ref|ZP_15022249.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-13b]
gi|393109342|gb|EJC09873.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-13]
gi|393134369|gb|EJC34783.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-13b]
Length = 138
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ D ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLERIDE----IDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|297616617|ref|YP_003701776.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
12680]
gi|297144454|gb|ADI01211.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
12680]
Length = 138
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVP---PIWKVWKMDQPAGRILELSILHLAMSEITV 248
L F R+L VDK HV ID + P W + +M I+ +++ + +EI
Sbjct: 42 LAFAREL----VDKTLEHVKTIDSYISKYSPEWSISRMATVDRNIMRMAVCEMLYTEIDP 97
Query: 249 VGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
V +VINEAV+LAK++ D + IN L
Sbjct: 98 V-----VVINEAVELAKKYGDENSSSFINAIL 124
>gi|148241109|ref|YP_001226266.1| transcription antitermination protein NusB [Synechococcus sp.
RCC307]
gi|147849419|emb|CAK26913.1| Transcription termination factor, NusB [Synechococcus sp. RCC307]
Length = 203
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
+D+ + + + W++ + RI + IL LA+ EI T + NEAV+LA R+ D A
Sbjct: 129 LDQGIDAVMEGWRLTR-LPRI-DQDILRLAVVEIDEFQTPAAVACNEAVELAHRYSDEAG 186
Query: 273 PRIINGCLRTFV 284
R+ING LR +
Sbjct: 187 RRMINGVLRRYT 198
>gi|422303622|ref|ZP_16390973.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9806]
gi|389791378|emb|CCI12804.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9806]
Length = 217
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L
Sbjct: 157 ILQIAVAEMLYLDIPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNRL 206
>gi|308183797|ref|YP_003927930.1| transcription antitermination protein NusB [Helicobacter pylori
SJM180]
gi|385229316|ref|YP_005789232.1| transcription antitermination protein NusB [Helicobacter pylori
Puno135]
gi|425788639|ref|YP_007016559.1| transcription antitermination protein NusB [Helicobacter pylori
Aklavik117]
gi|308059717|gb|ADO01613.1| transcription antitermination protein NusB [Helicobacter pylori
SJM180]
gi|344335754|gb|AEN17715.1| transcription antitermination protein NusB [Helicobacter pylori
Puno135]
gi|425626954|gb|AFX90422.1| transcription antitermination protein NusB [Helicobacter pylori
Aklavik117]
Length = 138
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|91225065|ref|ZP_01260287.1| transcription antitermination protein NusB [Vibrio alginolyticus
12G01]
gi|262395030|ref|YP_003286884.1| transcription termination protein NusB [Vibrio sp. Ex25]
gi|269965074|ref|ZP_06179239.1| N utilization substance protein B [Vibrio alginolyticus 40B]
gi|451970640|ref|ZP_21923865.1| transcription antitermination protein NusB [Vibrio alginolyticus
E0666]
gi|91190008|gb|EAS76279.1| transcription antitermination protein NusB [Vibrio alginolyticus
12G01]
gi|262338624|gb|ACY52419.1| transcription termination protein NusB [Vibrio sp. Ex25]
gi|269830377|gb|EEZ84602.1| N utilization substance protein B [Vibrio alginolyticus 40B]
gi|451933368|gb|EMD81037.1| transcription antitermination protein NusB [Vibrio alginolyticus
E0666]
Length = 155
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 153 VTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI 212
+T E V + +E S ++ E E+ ++ P L + + + R+LL VV +H +
Sbjct: 26 ITKENVAKIEEQFLSGDKYD--EEELHASEPALAAPETDVAYFRELLSGVVL---SHAEL 80
Query: 213 IDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDG 270
K+ P I + + +D ++EL++L LAM E+T +++VINEA++LAK F
Sbjct: 81 DSKIRPYISRPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135
Query: 271 AAPRIINGCL 280
+ + +NG L
Sbjct: 136 DSHKFVNGVL 145
>gi|339021881|ref|ZP_08645865.1| transcription antitermination factor NusB [Acetobacter tropicalis
NBRC 101654]
gi|338751119|dbj|GAA09169.1| transcription antitermination factor NusB [Acetobacter tropicalis
NBRC 101654]
Length = 156
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 197 KLLVAVVDKWDAHVHII-DKV---VPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
+L V+VV + +H +I D++ +P W V ++D P R L ++ A+ E
Sbjct: 49 RLFVSVVKEAVSHRSLILDQLAATLPATWPVTRLD-PVLRALFMA----ALGEALAGEVP 103
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
++INE +D+A F G P+++NG L T ++ L T
Sbjct: 104 ASVIINEYMDIAHGFFSGDEPKLVNGVLDTAIKQLTST 141
>gi|282895593|ref|ZP_06303727.1| NusB antitermination factor [Raphidiopsis brookii D9]
gi|281199433|gb|EFA74297.1| NusB antitermination factor [Raphidiopsis brookii D9]
Length = 213
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 12/91 (13%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPI---WKVWKMDQPAGRILELSILHLAMSEITVVG 250
+ ++++V V D + I+D+++ W+V ++ Q ++ IL +A++E+ +
Sbjct: 123 YAKEIVVTV----DENRTILDQIISQALVDWQVTRLAQ-----IDRDILQIAVAEMKFME 173
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
I INEAV+LAKR+ R ING LR
Sbjct: 174 VPPSIAINEAVELAKRYSGDDGHRFINGVLR 204
>gi|334117963|ref|ZP_08492053.1| NusB antitermination factor [Microcoleus vaginatus FGP-2]
gi|333459948|gb|EGK88558.1| NusB antitermination factor [Microcoleus vaginatus FGP-2]
Length = 210
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQ 254
R + ++ K A+ ID+++ W++++ A ++ I+ +A++E+ + Q
Sbjct: 113 VRTYALQILTKVSANRVQIDELLSEALVDWQIERLAR--IDRDIMRIAIAEMLYLALPEQ 170
Query: 255 IVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEAV LAKR+ R ING LR V
Sbjct: 171 VSVNEAVQLAKRYSGDEGHRFINGVLRRVV 200
>gi|404371392|ref|ZP_10976698.1| transcription antitermination factor NusB [Clostridium sp.
7_2_43FAA]
gi|226912479|gb|EEH97680.1| transcription antitermination factor NusB [Clostridium sp.
7_2_43FAA]
Length = 134
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 201 AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINE 259
++ K + ++ +ID+ + WK+D+ + + +SIL LA++E+ V ++ INE
Sbjct: 49 GILAKVEENITVIDQKIEEALTNWKIDRVSK--VNISILRLAIAEMLYVEDVPEKVAINE 106
Query: 260 AVDLAKRFCDGAAPRIINGCL 280
A++L K++ D + +NG L
Sbjct: 107 AIELTKKYSDEKSVSFVNGVL 127
>gi|218441932|ref|YP_002380261.1| transcription antitermination protein NusB [Cyanothece sp. PCC
7424]
gi|254772630|sp|B7KFR8.1|NUSB_CYAP7 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|218174660|gb|ACK73393.1| NusB antitermination factor [Cyanothece sp. PCC 7424]
Length = 212
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
IL +A++E+ + ++ INEAV++AKR+ D R ING LR L+ A
Sbjct: 157 ILRIAVAEMIFLEVPQKVAINEAVEIAKRYSDEEGYRFINGVLRRVTERLKTEA 210
>gi|166365064|ref|YP_001657337.1| transcription antitermination protein NusB [Microcystis aeruginosa
NIES-843]
gi|425465446|ref|ZP_18844755.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9809]
gi|254772647|sp|B0JGZ3.1|NUSB_MICAN RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|166087437|dbj|BAG02145.1| N utilization substance protein B homolog [Microcystis aeruginosa
NIES-843]
gi|389832313|emb|CCI24181.1| N utilization substance protein B homolog [Microcystis aeruginosa
PCC 9809]
Length = 217
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
IL +A++E+ + ++ INEA++LAKR+ D R ING LR L
Sbjct: 157 ILQIAVAEMLYLDLPQKVAINEAIELAKRYSDDEGYRFINGVLRRVTNKL 206
>gi|109946871|ref|YP_664099.1| transcription antitermination protein NusB [Helicobacter
acinonychis str. Sheeba]
gi|122973428|sp|Q17Z26.1|NUSB_HELAH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|109714092|emb|CAJ99100.1| transcription termination protein [Helicobacter acinonychis str.
Sheeba]
Length = 138
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|385221505|ref|YP_005770638.1| transcription antitermination protein NusB [Helicobacter pylori
SouthAfrica7]
gi|317010284|gb|ADU84031.1| transcription antitermination protein NusB [Helicobacter pylori
SouthAfrica7]
Length = 138
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|384887044|ref|YP_005761555.1| transcription antitermination protein NusB [Helicobacter pylori 52]
gi|261838874|gb|ACX98639.1| transcription antitermination protein NusB [Helicobacter pylori 52]
Length = 138
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|428207328|ref|YP_007091681.1| NusB antitermination factor [Chroococcidiopsis thermalis PCC 7203]
gi|428009249|gb|AFY87812.1| NusB antitermination factor [Chroococcidiopsis thermalis PCC 7203]
Length = 224
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 196 RKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG--TRH 253
R+ + +V+ + + ID+++ W++++ A ++ IL +A++EI +G R
Sbjct: 117 RRYALTLVNTVNQNRAEIDEILEQALVDWQLNRLAR--IDRDILRIAVAEIEFLGFQDRV 174
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLR 281
+ I+EAV+LAKR+ + ING LR
Sbjct: 175 SVAIDEAVELAKRYSGDEGYKFINGVLR 202
>gi|414078042|ref|YP_006997360.1| transcription antitermination factor [Anabaena sp. 90]
gi|413971458|gb|AFW95547.1| transcription antitermination factor [Anabaena sp. 90]
Length = 213
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+V ++ Q ++ IL +A +EI + I INEAV+LAKR+ R ING L
Sbjct: 149 WQVTRLAQ-----IDRDILQIATAEIKFMQVPDSIAINEAVELAKRYSGEDGHRFINGVL 203
Query: 281 R 281
R
Sbjct: 204 R 204
>gi|121534502|ref|ZP_01666325.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
gi|121306995|gb|EAX47914.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
Length = 141
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ R+L+ D H+ ID ++ K WK+++ AG ++ +I+ +A+ E+ +
Sbjct: 45 YARQLVTGTKD----HLAEIDAIIAGQAKEWKLERMAG--VDRNIVRMAIYEMRYGQEKL 98
Query: 254 --QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+VINEAV+LAK F + R +NG L V+
Sbjct: 99 PPNVVINEAVELAKIFSTEESGRFVNGILGALVK 132
>gi|406882845|gb|EKD30541.1| Transcription antitermination protein NusB [uncultured bacterium
(gcode 4)]
Length = 157
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 184 KLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAM 243
+LV + L + + + + V++K + II K P + + M P G +L + I M
Sbjct: 39 ELVSTSLDIPYFQSMFSGVIEKEGELLAIIHKYAPK-FDITSM--PVGNLLPIMIASYEM 95
Query: 244 SEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
+T+ ++ INEA++L+K F D A ++NG L +++ +GT
Sbjct: 96 LYLTIDSIPEKVSINEAIELSKTFSDDTARMMVNGVLNA-LKDEKGT 141
>gi|323702771|ref|ZP_08114431.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
gi|323532288|gb|EGB22167.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
Length = 144
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 13/93 (13%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT---- 247
L F R+L+ ++ H++ ID+++ + K W++ + A ++ +I+ LA+ E+
Sbjct: 42 LEFARQLVTGTLE----HINEIDEIISRVSKEWQLSRMAN--VDRNIMRLALYEMMFRDD 95
Query: 248 VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+ G+ + INEAV+LAK F + + +NG L
Sbjct: 96 IPGS---VSINEAVELAKAFGGADSGKFVNGIL 125
>gi|78211568|ref|YP_380347.1| transcription antitermination protein NusB [Synechococcus sp.
CC9605]
gi|78196027|gb|ABB33792.1| NusB family protein [Synechococcus sp. CC9605]
Length = 211
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
IDK + + + W++ + P ++ IL LA+ ++ + T + NEAV+LA R+ D
Sbjct: 134 IDKRLDQVMEGWRLTRLPR---IDRDILRLAVVDLESLRTPAPVAFNEAVELANRYSDEQ 190
Query: 272 APRIINGCLRTF 283
R+ING LR F
Sbjct: 191 GRRMINGVLRRF 202
>gi|229168926|ref|ZP_04296643.1| N utilization substance protein B [Bacillus cereus AH621]
gi|228614518|gb|EEK71626.1| N utilization substance protein B [Bacillus cereus AH621]
Length = 114
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+V VD + ID + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 26 FLESLVVGFVDNKEE----IDAAIRQNLKKWKLERIS--IVDRSILRVAVCEMKYMEEIP 79
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 80 HNVTINEAIEIAKTFGDEESRRFINGVL 107
>gi|157163972|ref|YP_001466235.1| transcription antitermination protein NusB [Campylobacter concisus
13826]
gi|166215673|sp|A7ZBS7.1|NUSB_CAMC1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|112801548|gb|EAT98892.1| transcription antitermination factor NusB [Campylobacter concisus
13826]
Length = 131
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
+D+++ P K + EL+IL L + E+ T ++INEA++LAK A
Sbjct: 59 LDEILKPHLKDGDFSKVGAT--ELAILRLGLYEMKFSQTDKAVIINEAIELAKELGSDQA 116
Query: 273 PRIINGCL 280
P+ ING L
Sbjct: 117 PKFINGVL 124
>gi|317498987|ref|ZP_07957269.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316893736|gb|EFV15936.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 171
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRH 253
T+K + + H+ ID+ + W +++ ELSIL LA EI +
Sbjct: 77 TQKEITEKTENLIEHLDEIDEQISAHTNAWNLERLGK--AELSILRLATYEILLDEQVPR 134
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++ INEAV+LAK++C+ A ING L ++++
Sbjct: 135 KVAINEAVELAKKYCNEKAAPFINGVLSKIGQDMD 169
>gi|440680563|ref|YP_007155358.1| NusB antitermination factor [Anabaena cylindrica PCC 7122]
gi|428677682|gb|AFZ56448.1| NusB antitermination factor [Anabaena cylindrica PCC 7122]
Length = 213
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ +++++ V D + IID+ + W++ + A ++ IL +A++E+ +
Sbjct: 123 YAKEIIITVND----NRSIIDQFISEALVDWQVSRLAQ--IDRDILQIAVAEMRFMRVPA 176
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLR 281
I INEAV+LAKR+ R ING LR
Sbjct: 177 SIAINEAVELAKRYSGDEGHRFINGVLR 204
>gi|414154697|ref|ZP_11411014.1| N utilization substance protein B homolog [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411453528|emb|CCO08918.1| N utilization substance protein B homolog [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 132
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 20/112 (17%)
Query: 177 EVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILEL 236
E S P +L +++ L++ T + H+ ID+++ + K W++++ A ++
Sbjct: 34 EFGSGPEELAFAQQLVKGTLE-----------HMQEIDELISQVSKDWQLNRMAN--VDR 80
Query: 237 SILHLAMSEITVVGTRHQI----VINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+I+ LA+ E+ R I +NEAV+LAK F + R +NG L FV
Sbjct: 81 NIIRLALYEMKF---RDDIPASVSVNEAVELAKIFGGADSGRFVNGILGKFV 129
>gi|332637334|ref|ZP_08416197.1| transcription antitermination protein NusB [Weissella cibaria KACC
11862]
Length = 140
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 165 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVW 224
+ D + A+ +VL P++ + L ++ +VD D I + + W +
Sbjct: 22 MNPDAQVEAVVQQVLDGDPEITWEDELPTDLLDMVNGIVDHQDEFDLTISEYLADGWTID 81
Query: 225 KMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
+++ + ++ ++ +AM E+ T +I +NEA+ LA F D A+ + ING L
Sbjct: 82 RLN-----LADVVLMRVAMYEVKYAETPAKIAVNEALQLAHDFTDDASRKFINGILN 133
>gi|167766576|ref|ZP_02438629.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
gi|167711699|gb|EDS22278.1| transcription antitermination factor NusB [Clostridium sp. SS2/1]
Length = 167
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRH 253
T+K + + H+ ID+ + W +++ ELSIL LA EI +
Sbjct: 73 TQKEITEKTENLIEHLDEIDEQISAHTNAWNLERLGK--AELSILRLATYEILLDEQVPR 130
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++ INEAV+LAK++C+ A ING L ++++
Sbjct: 131 KVAINEAVELAKKYCNEKAAPFINGVLSKIGQDMD 165
>gi|15611072|ref|NP_222723.1| transcription antitermination protein NusB [Helicobacter pylori
J99]
gi|420518783|ref|ZP_15017228.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-5b]
gi|7387981|sp|Q9ZN57.1|NUSB_HELPJ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|4154504|gb|AAD05585.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
gi|393128686|gb|EJC29126.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-5b]
Length = 138
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|385860305|ref|YP_005906815.1| transcription antitermination factor NusB [Mycoplasma haemofelis
Ohio2]
gi|334194006|gb|AEG73734.1| transcription antitermination factor NusB [Mycoplasma haemofelis
Ohio2]
Length = 139
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F K+ +D ++ +I+ + W + +++ SIL A+SE V+ T
Sbjct: 47 FENKIFDNYLDNKQRYISVIESYLNADWSLERLNTLCA-----SILLEAISEFHVLKTPI 101
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+++I E+V AK +CD RI+N L F++N
Sbjct: 102 KVLITESVKTAKNYCDENEYRIVNRVLEDFLKN 134
>gi|311069033|ref|YP_003973956.1| transcription antitermination protein NusB [Bacillus atrophaeus
1942]
gi|419820323|ref|ZP_14343934.1| transcription antitermination protein NusB [Bacillus atrophaeus
C89]
gi|310869550|gb|ADP33025.1| transcription antitermination protein NusB [Bacillus atrophaeus
1942]
gi|388475475|gb|EIM12187.1| transcription antitermination protein NusB [Bacillus atrophaeus
C89]
Length = 131
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTR 252
F +L+ V+D H +D+++ WK+D+ A ++ ++L LA+ E+ V
Sbjct: 40 FFEELVYGVID----HQVQLDEMISKHLVNWKLDRIAN--VDRAVLRLAVYEMVYVEDIP 93
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
+ +NEA++LAKRF D A + +NG L ++E +
Sbjct: 94 VNVSMNEAIELAKRFGDDKATKFVNGVLSNIKSDIEQS 131
>gi|309789561|ref|ZP_07684142.1| NusB antitermination factor [Oscillochloris trichoides DG-6]
gi|308228297|gb|EFO81944.1| NusB antitermination factor [Oscillochloris trichoides DG6]
Length = 150
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 175 EAEVLSAPPKLVYSKLLL---------RFTRKLLVAVVDKWDAHVHIIDKVV---PPIWK 222
E + P +VY + L+ RF ++ V W+ H +D V+ P W
Sbjct: 18 EVDATDHPIDVVYERRLVDEELPAEGERFLNQI---VFGSWE-HRSYLDGVIEEAAPNWP 73
Query: 223 VWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRT 282
V +M IL ++I L + E+ T + VINEAV+LAK F + R ING L T
Sbjct: 74 VTQMPGVDKAILRIAIFELLIDEVE--QTPVKAVINEAVELAKHFGSDNSSRFINGVLGT 131
Query: 283 FV 284
V
Sbjct: 132 VV 133
>gi|289550704|ref|YP_003471608.1| transcription termination protein NusB [Staphylococcus lugdunensis
HKU09-01]
gi|315658200|ref|ZP_07911072.1| transcription antitermination factor NusB [Staphylococcus
lugdunensis M23590]
gi|385784331|ref|YP_005760504.1| putative N utilization substance protein B [Staphylococcus
lugdunensis N920143]
gi|418414006|ref|ZP_12987222.1| transcription antitermination factor NusB [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|418635269|ref|ZP_13197648.1| transcription antitermination factor NusB [Staphylococcus
lugdunensis VCU139]
gi|289180236|gb|ADC87481.1| Transcription termination protein NusB [Staphylococcus lugdunensis
HKU09-01]
gi|315496529|gb|EFU84852.1| transcription antitermination factor NusB [Staphylococcus
lugdunensis M23590]
gi|339894587|emb|CCB53869.1| putative N utilization substance protein B [Staphylococcus
lugdunensis N920143]
gi|374841991|gb|EHS05443.1| transcription antitermination factor NusB [Staphylococcus
lugdunensis VCU139]
gi|410877644|gb|EKS25536.1| transcription antitermination factor NusB [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 128
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMS 244
+ L F L+ V D H I+DK + P K W + R+L+ IL +A
Sbjct: 37 HPDLDFTFIHWLVTGVKD----HEPILDKAIEPHLKDWSL----NRLLKTDRIILRMATF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
E+ T +++INEAV+L K+F D + ING L
Sbjct: 89 ELLHSDTPPKVIINEAVELTKQFSDDDHYKFINGVL 124
>gi|427735105|ref|YP_007054649.1| NusB antitermination factor [Rivularia sp. PCC 7116]
gi|427370146|gb|AFY54102.1| NusB antitermination factor [Rivularia sp. PCC 7116]
Length = 228
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 200 VAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINE 259
+ +V K + +ID+ + W++ + A ++ IL +A+++I ++ INE
Sbjct: 139 IKLVRKITSERQLIDEKISTALVDWQVKRLAQ--IDRDILRIAVADIEFFDIPSKVAINE 196
Query: 260 AVDLAKRFCDGAAPRIINGCLR 281
AV+LAKR+ R ING LR
Sbjct: 197 AVELAKRYSGEDGHRFINGVLR 218
>gi|262196667|ref|YP_003267876.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
gi|262080014|gb|ACY15983.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
Length = 150
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTR 252
F R L+ V H+ ID+ + + W++++ + ++ ++L LA+ E++ G
Sbjct: 50 FARSLIEQVY----PHLERIDERIQTASRNWRIERMSR--VDRNVLRLAVGELSQPDGAA 103
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKAS 299
++VINEAV+LAKRF +P +NG L ++ AN + S
Sbjct: 104 ARVVINEAVELAKRFGTTESPAFVNGILDRVDQHKRDDANPNGGQPS 150
>gi|407796236|ref|ZP_11143192.1| transcription antitermination protein NusB [Salimicrobium sp. MJ3]
gi|407019590|gb|EKE32306.1| transcription antitermination protein NusB [Salimicrobium sp. MJ3]
Length = 124
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQI 255
+ L+ +VD H +D+++ + W +++ +E ++L +A+ E+ G T Q+
Sbjct: 38 EFLMELVDGVTRHQQELDELISDHLEHWSLERLPK--VERTVLRIAIFELKFYGDTPTQV 95
Query: 256 VINEAVDLAKRFCDGAAPRIINGCL 280
INEAV+LAK F + + R +NG L
Sbjct: 96 AINEAVELAKTFGEETSGRFVNGVL 120
>gi|158336915|ref|YP_001518090.1| transcription antitermination protein NusB [Acaryochloris marina
MBIC11017]
gi|189035877|sp|B0C5Q2.1|NUSB_ACAM1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|158307156|gb|ABW28773.1| transcription antitermination protein NusB [Acaryochloris marina
MBIC11017]
Length = 205
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ W++ + A ++ ++L LA++E+ + +Q+ INE+V+LAK++
Sbjct: 130 IDQILETSLVDWQLHRLAH--IDANLLRLAVAEMKYLDIPNQVAINESVELAKKYSAEEG 187
Query: 273 PRIINGCLRTFVRNL 287
R ING LR R +
Sbjct: 188 HRFINGVLRRVTRQI 202
>gi|429762620|ref|ZP_19295006.1| transcription antitermination factor NusB [Anaerostipes hadrus DSM
3319]
gi|429181254|gb|EKY22426.1| transcription antitermination factor NusB [Anaerostipes hadrus DSM
3319]
Length = 167
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRH 253
T+K + + H+ ID+ + W +++ ELSIL LA EI +
Sbjct: 73 TQKEITEKTENLIEHLDEIDEQISAHTNAWNLERLGK--AELSILRLATYEILLDEQVPR 130
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++ INEAV+LAK++C+ A ING L ++++
Sbjct: 131 KVAINEAVELAKKYCNEKAAPFINGVLSKIGQDMD 165
>gi|340758001|ref|ZP_08694593.1| transcription antitermination factor NusB [Fusobacterium varium
ATCC 27725]
gi|251836289|gb|EES64826.1| transcription antitermination factor NusB [Fusobacterium varium
ATCC 27725]
Length = 132
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F +K + + + D + +I++ + W ++ +E ++L +++ EI T +
Sbjct: 46 FIKKYMNGIAENNDKILKVIEEKITG----WSFERIGN--VEKALLKISVYEILCEDTPY 99
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+IVINEAV+LAK + D +NG L V N
Sbjct: 100 EIVINEAVELAKIYGDEKTSEFLNGVLAKIVNN 132
>gi|87301561|ref|ZP_01084401.1| transcription antitermination protein NusB [Synechococcus sp. WH
5701]
gi|87283778|gb|EAQ75732.1| transcription antitermination protein NusB [Synechococcus sp. WH
5701]
Length = 204
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 201 AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVIN 258
AV+ DA +D + + + W++ GR+ ++ IL LA ++ GT + N
Sbjct: 123 AVLQDRDA----LDSRLDAVMEGWRL----GRLPRIDRDILRLAAVDLHTFGTPAPVACN 174
Query: 259 EAVDLAKRFCDGAAPRIINGCLRTF 283
EAV+LA R+ D R+ING LR
Sbjct: 175 EAVELANRYSDDQGRRMINGILRRL 199
>gi|418641970|ref|ZP_13204175.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-24]
gi|418650379|ref|ZP_13212397.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-91]
gi|418658977|ref|ZP_13220672.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-111]
gi|419773198|ref|ZP_14299209.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CO-23]
gi|375018425|gb|EHS12005.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-24]
gi|375027665|gb|EHS21023.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-91]
gi|375036962|gb|EHS30020.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-111]
gi|383973022|gb|EID89043.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CO-23]
Length = 132
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAK 265
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K
Sbjct: 54 GHEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTK 109
Query: 266 RFCDGAAPRIINGCLRTFVRNLE 288
+F D + ING L +E
Sbjct: 110 QFSDDDHYKFINGVLSNIKNKIE 132
>gi|226226881|ref|YP_002760987.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
gi|226090072|dbj|BAH38517.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
Length = 157
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F +L+ V D+ ++D + + W++++ +E S+L LA +E+ T
Sbjct: 67 FASRLIATVADRG----AVLDAALVEVTANWRLERLGA--IERSVLRLAAAELAREETPV 120
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++V+ EAV LA+R+ + R +NG L + R L
Sbjct: 121 KVVLQEAVHLAERYGTERSARFVNGVLDAYARRL 154
>gi|373106597|ref|ZP_09520899.1| transcription antitermination factor NusB [Stomatobaculum longum]
gi|371652291|gb|EHO17709.1| transcription antitermination factor NusB [Stomatobaculum longum]
Length = 138
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGT 251
+ R+ + AV+DK + ID ++ W + Q GR+ EL+IL LA E+
Sbjct: 52 KICRERVKAVLDKREE----IDGILQQASSGWSLRQ-MGRV-ELTILRLACFELRFDENI 105
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
++ INEAV+LAK+F AP +NG L V
Sbjct: 106 PEKVAINEAVELAKKFGGEEAPSFVNGVLAKLV 138
>gi|375085369|ref|ZP_09732013.1| transcription antitermination factor NusB [Megamonas funiformis YIT
11815]
gi|291532856|emb|CBL05969.1| transcription antitermination factor NusB [Megamonas hypermegale
ART12/1]
gi|374567418|gb|EHR38636.1| transcription antitermination factor NusB [Megamonas funiformis YIT
11815]
Length = 131
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 175 EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRIL 234
E EV SA ++ K L + +V ++ IDK++ K WK+++ +G +
Sbjct: 21 ECEVDSAIENVLSHKKLHEADCDFVRILVSGTRENLESIDKMIAEKSKDWKIERMSG--I 78
Query: 235 ELSILHLAMSEITVVGTRH--QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+ +I+ LA+ E+ + I INEAV+LAK+F + R +NG L + ++
Sbjct: 79 DRNIVRLAIFEMKFSSDKLVPNIAINEAVELAKKFGTDDSARFVNGILGSMIK 131
>gi|321310948|ref|YP_004193277.1| transcription termination factor N-utilization substance protein B
[Mycoplasma haemofelis str. Langford 1]
gi|319802792|emb|CBY93438.1| transcription termination factor N-utilization substance protein B
[Mycoplasma haemofelis str. Langford 1]
Length = 136
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F K+ +D ++ +I+ + W + +++ SIL A+SE V+ T
Sbjct: 44 FENKIFDNYLDNKQRYISVIESYLNADWSLERLNTLCA-----SILLEAISEFHVLKTPI 98
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+++I E+V AK +CD RI+N L F++N
Sbjct: 99 KVLITESVKTAKNYCDENEYRIVNRVLEDFLKN 131
>gi|330993560|ref|ZP_08317495.1| N utilization substance protein B-like protein [Gluconacetobacter
sp. SXCC-1]
gi|329759590|gb|EGG76099.1| N utilization substance protein B-like protein [Gluconacetobacter
sp. SXCC-1]
Length = 177
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 200 VAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVIN 258
VA ++ D +H +++P W + ++D P R +I+H A E+T +++IN
Sbjct: 79 VARQERIDGLLH---EILPASWPLARLD-PVLR----AIMHAAGGEMTGADPVPARVIIN 130
Query: 259 EAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVP 303
E +D+A F G PR++NG L R L+ A A + + P
Sbjct: 131 EYMDIAHGFLAGDEPRMLNGVLDALSRRLQEPAAQPAMDVTPDTP 175
>gi|384867502|ref|YP_005747698.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus TCH60]
gi|385781810|ref|YP_005757981.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 11819-97]
gi|417892432|ref|ZP_12536481.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21201]
gi|418446129|ref|ZP_13017603.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS8]
gi|418574488|ref|ZP_13138657.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21333]
gi|418652898|ref|ZP_13214861.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-99]
gi|418873199|ref|ZP_13427509.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-125]
gi|418948703|ref|ZP_13500993.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-157]
gi|418955680|ref|ZP_13507617.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-189]
gi|419784605|ref|ZP_14310368.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-M]
gi|312438007|gb|ADQ77078.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus TCH60]
gi|341857597|gb|EGS98409.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21201]
gi|364522799|gb|AEW65549.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371979215|gb|EHO96450.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21333]
gi|375021066|gb|EHS14573.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-99]
gi|375366390|gb|EHS70387.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-125]
gi|375370766|gb|EHS74564.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-189]
gi|375371244|gb|EHS75028.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-157]
gi|383363815|gb|EID41141.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-M]
gi|387735267|gb|EIK22396.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS8]
Length = 132
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 55 HEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 110
Query: 267 FCDGAAPRIINGCLRTFVRNLE 288
F D + ING L +E
Sbjct: 111 FSDDDHYKFINGVLSNIKNKIE 132
>gi|358052583|ref|ZP_09146429.1| transcription antitermination protein NusB [Staphylococcus simiae
CCM 7213]
gi|357257922|gb|EHJ08133.1| transcription antitermination protein NusB [Staphylococcus simiae
CCM 7213]
Length = 129
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W +++ + RI IL +A EI T ++VINEAV+L K+
Sbjct: 55 HEPVLDETIRPHLKDWTIERLLKSDRI----ILRMATYEILHSDTPEKVVINEAVELTKQ 110
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 111 FSDDDHYKFINGVL 124
>gi|385218267|ref|YP_005779742.1| transcription antitermination protein NusB [Helicobacter pylori
Gambia94/24]
gi|420468050|ref|ZP_14966795.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-10]
gi|420486618|ref|ZP_14985226.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-8]
gi|420520506|ref|ZP_15018937.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-8b]
gi|317013425|gb|ADU80861.1| transcription antitermination protein NusB [Helicobacter pylori
Gambia94/24]
gi|393088592|gb|EJB89238.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-10]
gi|393104171|gb|EJC04728.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-8]
gi|393127093|gb|EJC27538.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-8b]
Length = 138
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++ I+INE ++L K + + P+ +N L + + L+
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLD 133
>gi|307150111|ref|YP_003885495.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
gi|306980339|gb|ADN12220.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
Length = 212
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
IL +A++E+ + ++ INEAV++AKR+ D R ING LR L
Sbjct: 157 ILRIAVAEMLFLEVPQKVAINEAVEIAKRYSDEEGYRFINGVLRRVTEQL 206
>gi|75906501|ref|YP_320797.1| transcription antitermination protein NusB [Anabaena variabilis
ATCC 29413]
gi|119372276|sp|Q3MGI4.1|NUSB_ANAVT RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|75700226|gb|ABA19902.1| NusB antitermination factor [Anabaena variabilis ATCC 29413]
Length = 211
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+V ++ Q ++ IL +A++E+ + + + INEAV+LAKR+ R ING L
Sbjct: 145 WQVTRLAQ-----IDRDILRIAVAEMMFLNLPNSVAINEAVELAKRYSGDEGHRFINGVL 199
Query: 281 R 281
R
Sbjct: 200 R 200
>gi|417002338|ref|ZP_11941727.1| transcription antitermination factor NusB [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479479|gb|EGC82575.1| transcription antitermination factor NusB [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 127
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 237 SILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+IL+L+++EI +G + INEAV+LAK++ D ++IN L + VR
Sbjct: 75 AILYLSLNEIYYLGVPVSVSINEAVNLAKKYSDKDDYKLINSILGSIVR 123
>gi|339499547|ref|YP_004697582.1| NusB antitermination factor [Spirochaeta caldaria DSM 7334]
gi|338833896|gb|AEJ19074.1| NusB antitermination factor [Spirochaeta caldaria DSM 7334]
Length = 143
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F R L+ ++ ++ +D+++ K W D+ L+ + LA+ ++V ++
Sbjct: 49 FARLLIAGTIE----NIETVDRLIKGHLKNWNFDR-------LNRVDLAIMRMSVYSLKY 97
Query: 254 Q------IVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 292
Q IVI+EA+D+AK + + R ING L ++L+G +
Sbjct: 98 QKDVPPSIVIDEAIDIAKEYGTDDSFRFINGVLDAIKKDLQGGSG 142
>gi|335047396|ref|ZP_08540417.1| transcription antitermination factor NusB [Parvimonas sp. oral
taxon 110 str. F0139]
gi|333761204|gb|EGL38759.1| transcription antitermination factor NusB [Parvimonas sp. oral
taxon 110 str. F0139]
Length = 134
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 165 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVW 224
+ DE ES IE L + +++ RK +++D D +II + + W
Sbjct: 23 FKCDEIESFIEYFDLPSSE--------VKYIRKNCKSIIDNLDNIDNIIKENLEGCWNYN 74
Query: 225 KMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
++ + ++L+IL +A++EI + + INEA+++A ++ A+ + ING L T
Sbjct: 75 RIAK-----IDLAILRVAVNEIYYLDEIPESVAINEAIEIANKYSTDASYKFINGILGTI 129
Query: 284 VR 285
VR
Sbjct: 130 VR 131
>gi|373497937|ref|ZP_09588453.1| transcription antitermination factor NusB [Fusobacterium sp. 12_1B]
gi|404367798|ref|ZP_10973160.1| transcription antitermination factor NusB [Fusobacterium ulcerans
ATCC 49185]
gi|313688889|gb|EFS25724.1| transcription antitermination factor NusB [Fusobacterium ulcerans
ATCC 49185]
gi|371962459|gb|EHO80060.1| transcription antitermination factor NusB [Fusobacterium sp. 12_1B]
Length = 132
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
+ F +K + + + D + I++ + W ++ +E ++L +++ EI T
Sbjct: 44 ITFIKKYMNGIAENNDRILKTIEEKITG----WSFERIGN--VEKALLKISVYEILCEDT 97
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
H+IVINEAV+LAK + D ING L V
Sbjct: 98 PHEIVINEAVELAKMYGDEKTSEFINGVLAKVV 130
>gi|260436645|ref|ZP_05790615.1| transcription antitermination factor NusB [Synechococcus sp. WH
8109]
gi|260414519|gb|EEX07815.1| transcription antitermination factor NusB [Synechococcus sp. WH
8109]
Length = 211
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
ID+ + + + W++ + P ++ IL LA+ ++ + T + NEAV+LA R+ D
Sbjct: 134 IDRRLDQVMEGWRLTRLPR---IDRDILRLAVVDLESLRTPAPVAFNEAVELANRYSDDQ 190
Query: 272 APRIINGCLRTF 283
R+ING LR F
Sbjct: 191 GRRMINGVLRRF 202
>gi|164688612|ref|ZP_02212640.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
16795]
gi|164603025|gb|EDQ96490.1| transcription antitermination factor NusB [Clostridium bartlettii
DSM 16795]
Length = 169
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 199 LVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVI 257
L V D + I++++ K W +++ + ++L+IL +A++E ++ + ++ I
Sbjct: 79 LTKVCDILRLRIDDINELIENNTKNWSINRFSK--IDLAILQIAIAEMLSDLNIPEKVSI 136
Query: 258 NEAVDLAKRFCDGAAPRIINGCLRTFV 284
N+A+DLAK +C+ P+ ING L + V
Sbjct: 137 NQAIDLAKIYCEEKTPKFINGILGSVV 163
>gi|253827096|ref|ZP_04869981.1| transcription antitermination protein NusB [Helicobacter canadensis
MIT 98-5491]
gi|313141294|ref|ZP_07803487.1| transcription antitermination factor NusB [Helicobacter canadensis
MIT 98-5491]
gi|253510502|gb|EES89161.1| transcription antitermination protein NusB [Helicobacter canadensis
MIT 98-5491]
gi|313130325|gb|EFR47942.1| transcription antitermination factor NusB [Helicobacter canadensis
MIT 98-5491]
Length = 184
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+E +IL L + EI I INEA++LAK F + A+ + ING L +NL+
Sbjct: 79 MEKAILRLGVYEIAFNNLDKAIAINEALELAKTFGNEASAKFINGVLDNIAKNLQ 133
>gi|417793561|ref|ZP_12440835.1| transcription antitermination factor NusB [Streptococcus oralis
SK255]
gi|334272700|gb|EGL91060.1| transcription antitermination factor NusB [Streptococcus oralis
SK255]
Length = 140
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L +V A +DK + K W +++ ++E ++L L + EI T +
Sbjct: 51 FLTELVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEIISFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>gi|116492583|ref|YP_804318.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
gi|421894362|ref|ZP_16324851.1| transcription antitermination factor NusB [Pediococcus pentosaceus
IE-3]
gi|122265953|sp|Q03FZ6.1|NUSB_PEDPA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|116102733|gb|ABJ67876.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
gi|385272666|emb|CCG90223.1| transcription antitermination factor NusB [Pediococcus pentosaceus
IE-3]
Length = 133
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
+F + L++ V +A I + W V +++ P R+ IL + EI T
Sbjct: 46 QFLKDLVMGVSLNLEAINETISGELKKGWTVKRLESP-DRV----ILQMGTYEIKYTETP 100
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
++ INEA++LAK++ D A + ING L +
Sbjct: 101 DKVAINEALELAKKYTDEDARKFINGVLSNIAK 133
>gi|406970570|gb|EKD94909.1| hypothetical protein ACD_25C00168G0003 [uncultured bacterium]
Length = 145
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH--QIVINEAVDLAK 265
H++ IDKV+ W +D+ A ++L +L +A+ E+ + G + ++V++EAV+LAK
Sbjct: 61 THINDIDKVIEESAPEWPIDKIAK--VDLVVLRIAVFEL-LFGKKAPVKVVVDEAVELAK 117
Query: 266 RFCDGAAPRIINGCLRTFVRN 286
F + + + +NG L T + N
Sbjct: 118 EFGNDTSHKFVNGVLGTVIGN 138
>gi|414160892|ref|ZP_11417155.1| transcription antitermination factor NusB [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876571|gb|EKS24469.1| transcription antitermination factor NusB [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 129
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMS 244
Y L F L+ V D H ++D+ + K WK+ + + RI IL +A
Sbjct: 37 YPDLEFDFIHWLVSGVKD----HEPVLDQKIQENLKDWKISRLLKSDRI----ILRIAAF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
E+ T ++VINEAV+LAK+F D R ING L
Sbjct: 89 ELEHSDTPPKVVINEAVELAKQFSDEDHYRFINGVL 124
>gi|291558612|emb|CBL37412.1| transcription antitermination factor NusB [butyrate-producing
bacterium SSC/2]
Length = 137
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRH 253
T+K + + H+ ID+ + W +++ ELSIL LA EI +
Sbjct: 43 TQKEITEKTENLIEHLDEIDEQISAHTNAWNLERLGK--AELSILRLATYEILLDEQVPR 100
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++ INEAV+LAK++C+ A ING L ++++
Sbjct: 101 KVAINEAVELAKKYCNEKAAPFINGVLSKIGQDMD 135
>gi|345890118|ref|ZP_08841071.1| transcription antitermination factor NusB [Bilophila sp. 4_1_30]
gi|345038840|gb|EGW43221.1| transcription antitermination factor NusB [Bilophila sp. 4_1_30]
Length = 164
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
++V +D V+ + W++D+ G+I EL++L LA+ E+ ++ INEA++L+ R
Sbjct: 73 SNVKNLDSVIERFSQNWRVDR-LGKI-ELTLLRLAVFEMLYRADVPPKVAINEALELSTR 130
Query: 267 FCDGAAPRIINGCLRTFVRNLEGTANIEASKAS 299
F D A ING L ++ E A KA+
Sbjct: 131 FGDAKAKSFINGILDAAIKAQEAGTLTVAGKAN 163
>gi|330838907|ref|YP_004413487.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185]
gi|329746671|gb|AEC00028.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185]
Length = 140
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 171 ESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPA 230
++A+E + Y+ L+R TR+ L A+ ++ A H WK+D+
Sbjct: 37 DAAVEEMPVETKRDYSYAASLVRGTREHLAAIDEEIAASTHD-----------WKLDRMT 85
Query: 231 GRILELSILHLAMSEITVVGTRHQ--IVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
G ++ +I+ +A+ E+ + I INEAV+LAK+F + R +NG L R
Sbjct: 86 G--VDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKKFGTDDSSRYVNGILGGLAR 140
>gi|443478989|ref|ZP_21068664.1| NusB antitermination factor [Pseudanabaena biceps PCC 7429]
gi|443015628|gb|ELS30497.1| NusB antitermination factor [Pseudanabaena biceps PCC 7429]
Length = 213
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ W++++ A ++ IL +A +E+ + +I I+EAV+LAKR+
Sbjct: 134 IDEIISSALVNWQIERLAQ--VDKDILRIATAEMMFMSVASKIAIDEAVELAKRYSSEDG 191
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 192 YRFINGVLR 200
>gi|323484853|ref|ZP_08090209.1| transcription antitermination factor NusB [Clostridium symbiosum
WAL-14163]
gi|323693777|ref|ZP_08107972.1| transcription antitermination factor NusB [Clostridium symbiosum
WAL-14673]
gi|323401849|gb|EGA94191.1| transcription antitermination factor NusB [Clostridium symbiosum
WAL-14163]
gi|323502163|gb|EGB18030.1| transcription antitermination factor NusB [Clostridium symbiosum
WAL-14673]
Length = 171
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 156 ETVEEADELLRSDEEESAI---EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI 212
ET E+ +E EE + E+E+L +P V+ + + ++ + D+ ++
Sbjct: 48 ETKEQMEEYFTEPVEEVSAPGGESEILHSPALDVFDGGYVTNKVERIIEKIPDLDSRINE 107
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
I K W +M + +EL+IL LA+ EI ++ INEAV+LAK+F
Sbjct: 108 IAKG----WTTKRMGK-----VELTILRLALFEIQYDEDVPEKVAINEAVELAKKFGGDD 158
Query: 272 APRIINGCLRTFV 284
+P +NG L V
Sbjct: 159 SPSFVNGILAKLV 171
>gi|257865766|ref|ZP_05645419.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
gi|257872101|ref|ZP_05651754.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
gi|257799700|gb|EEV28752.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
gi|257806265|gb|EEV35087.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
Length = 154
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
WK+ ++ + ++++IL +A+ E I V +++ +NEA++LAK F D + + +NG
Sbjct: 83 WKIQRLSK-----MDVTILRIALYEMIYVDNVPNRVALNEAIELAKTFSDDQSRKFVNGI 137
Query: 280 LRTFVRNLEGTAN 292
L T + LE N
Sbjct: 138 LSTVNQELETKTN 150
>gi|124021724|ref|YP_001016031.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9303]
gi|123962010|gb|ABM76766.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
9303]
Length = 211
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID + + + W++ + ++ IL LA+ ++T + T + NEAV+LA R+ D
Sbjct: 134 IDASIDAVMEGWRLSRLPR--IDRDILRLAVVDLTALQTPSAVACNEAVELAHRYSDDQG 191
Query: 273 PRIINGCLRTF 283
R+ING LR
Sbjct: 192 RRMINGVLRRL 202
>gi|300868307|ref|ZP_07112935.1| N utilization substance protein B homolog [Oscillatoria sp. PCC
6506]
gi|300333687|emb|CBN58119.1| N utilization substance protein B homolog [Oscillatoria sp. PCC
6506]
Length = 210
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
ID+++ W++D+ P ++ I+ +A++EI + Q+ INEA++LAKR+
Sbjct: 131 IDELLSAALVDWQIDRLPR---IDRDIMRIAVAEIMFLDLPEQVGINEAIELAKRYSGDE 187
Query: 272 APRIINGCLRTFVRNLE 288
R ING LR V ++
Sbjct: 188 GYRFINGVLRRAVEKIK 204
>gi|257784275|ref|YP_003179492.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
gi|257472782|gb|ACV50901.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
Length = 167
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDG 270
+D ++ K W +D+ P+ ++ ++L +++ EI V + INE VDLA+ +C
Sbjct: 62 LDDIIAAYSKDWSIDRMPS---VDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGD 118
Query: 271 AAPRIINGCLRTFVRNLEGTANI 293
+PR ING L V +++ +I
Sbjct: 119 DSPRFINGVLGRIVDDIDAGEDI 141
>gi|51892987|ref|YP_075678.1| transcription termination factor [Symbiobacterium thermophilum IAM
14863]
gi|81610502|sp|Q67NA9.1|NUSB_SYMTH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|51856676|dbj|BAD40834.1| transcription termination factor [Symbiobacterium thermophilum IAM
14863]
Length = 153
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 56/202 (27%)
Query: 94 CSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPV 153
S R ARELAL ++ + G+DP + L EP + D+
Sbjct: 1 MSRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRL--------------- 45
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
EEESA F R+L V W H
Sbjct: 46 ---------------EEESA-------------------EFARRL---VRGAWQ-HREES 67
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAA 272
D+++ + W++++ A ++ +IL +A+ EI + + EAV+LAK F +
Sbjct: 68 DRLIAQYARGWRVERMAA--VDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTFSTADS 125
Query: 273 PRIINGCLRTFVRNLEGTANIE 294
R +NG L + +R ++G A +
Sbjct: 126 SRFVNGILGSVIRGMKGAAGAD 147
>gi|260887340|ref|ZP_05898603.1| transcription antitermination factor NusB [Selenomonas sputigena
ATCC 35185]
gi|260862976|gb|EEX77476.1| transcription antitermination factor NusB [Selenomonas sputigena
ATCC 35185]
Length = 160
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 171 ESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPA 230
++A+E + Y+ L+R TR+ L A+ ++ A H WK+D+
Sbjct: 57 DAAVEEMPVETKRDYSYAASLVRGTREHLAAIDEEIAASTHD-----------WKLDRMT 105
Query: 231 GRILELSILHLAMSEITVVGTRHQ--IVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
G ++ +I+ +A+ E+ + I INEAV+LAK+F + R +NG L R
Sbjct: 106 G--VDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKKFGTDDSSRYVNGILGGLAR 160
>gi|428772179|ref|YP_007163967.1| NusB antitermination factor [Cyanobacterium stanieri PCC 7202]
gi|428686458|gb|AFZ46318.1| NusB antitermination factor [Cyanobacterium stanieri PCC 7202]
Length = 208
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
I++++ + WK+++ + +++ +IL +A++E+ + ++ INEAV++AK + D
Sbjct: 134 INQMLDDVMIDWKLNRLS--LIDGNILRIAVAEMAFLQIEPKVAINEAVEIAKAYSDDDG 191
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 192 FRFINGVLR 200
>gi|229828872|ref|ZP_04454941.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
14600]
gi|229792035|gb|EEP28149.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
14600]
Length = 152
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
T T E D+L +++++ I + S P T K L A H+ I
Sbjct: 39 TDHTELEIDDLTEEEDQKAVIRLDQASWP----------EITAKCLGAA-----GHLPEI 83
Query: 214 DKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
D+++ + WK+ + ++L++L LA+ E+ I INEAV+LAKR+ +P
Sbjct: 84 DRIIEESSEGWKLSRLTK--VDLTLLRLAVYEMKFENLPSGIAINEAVELAKRYGTDKSP 141
Query: 274 RIINGCL 280
+NG L
Sbjct: 142 AFVNGVL 148
>gi|386729225|ref|YP_006195608.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus 71193]
gi|418978247|ref|ZP_13526048.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus DR10]
gi|379993863|gb|EIA15308.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus DR10]
gi|384230518|gb|AFH69765.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus 71193]
Length = 134
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 60 HEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 115
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 116 FSDDDHYKFINGVL 129
>gi|87161392|ref|YP_494169.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|161509753|ref|YP_001575412.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|294848555|ref|ZP_06789301.1| transcription antitermination factor NusB [Staphylococcus aureus
A9754]
gi|415686288|ref|ZP_11450425.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS01]
gi|418646798|ref|ZP_13208891.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-88]
gi|422742691|ref|ZP_16796694.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MRSA177]
gi|119390827|sp|Q2FGK9.1|NUSB_STAA3 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|189035911|sp|A8Z464.1|NUSB_STAAT RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|87127366|gb|ABD21880.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|160368562|gb|ABX29533.1| N utilization substance B [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|294824581|gb|EFG41004.1| transcription antitermination factor NusB [Staphylococcus aureus
A9754]
gi|315198781|gb|EFU29109.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS01]
gi|320144127|gb|EFW35896.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MRSA177]
gi|375032092|gb|EHS25347.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-88]
Length = 129
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAK 265
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K
Sbjct: 54 GHEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTK 109
Query: 266 RFCDGAAPRIINGCL 280
+F D + ING L
Sbjct: 110 QFSDDDHYKFINGVL 124
>gi|160947152|ref|ZP_02094319.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
gi|158446286|gb|EDP23281.1| transcription antitermination factor NusB [Parvimonas micra ATCC
33270]
Length = 134
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 165 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVW 224
+ DE ES IE L + +++ RK +++D D +II + + W
Sbjct: 23 FKCDEIESFIEYFDLPSSE--------VKYIRKNCKSIIDNLDNIDNIIKENLEGCWNYN 74
Query: 225 KMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
++ + ++L+IL +A++EI + + INEA+++A ++ A+ + ING L T
Sbjct: 75 RIAK-----IDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDASYKFINGILGTI 129
Query: 284 VR 285
VR
Sbjct: 130 VR 131
>gi|167037510|ref|YP_001665088.1| transcription antitermination protein NusB [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040172|ref|YP_001663157.1| transcription antitermination protein NusB [Thermoanaerobacter sp.
X514]
gi|256752868|ref|ZP_05493706.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300914255|ref|ZP_07131571.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
gi|307724509|ref|YP_003904260.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
gi|320115924|ref|YP_004186083.1| transcription antitermination factor NusB [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|238687554|sp|B0K0U6.1|NUSB_THEPX RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|238687696|sp|B0K9D9.1|NUSB_THEP3 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|166854412|gb|ABY92821.1| NusB antitermination factor [Thermoanaerobacter sp. X514]
gi|166856344|gb|ABY94752.1| NusB antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748245|gb|EEU61311.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300889190|gb|EFK84336.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
gi|307581570|gb|ADN54969.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
gi|319929015|gb|ADV79700.1| transcription antitermination factor NusB [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 140
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H+ IDK + + W +++ ++L+IL ++ E+ I INEAV++AK++
Sbjct: 54 HLEEIDKEIERYSQNWALNRMPK--IDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYS 111
Query: 269 DGAAPRIINGCLRTFVRN---LEGTAN 292
+P ING L FVR+ EG +N
Sbjct: 112 TEDSPAFINGLLGAFVRDEGLEEGESN 138
>gi|365154141|ref|ZP_09350574.1| transcription antitermination factor NusB [Campylobacter sp.
10_1_50]
gi|416114075|ref|ZP_11593609.1| Transcription termination protein NusB [Campylobacter concisus
UNSWCD]
gi|363649979|gb|EHL89070.1| transcription antitermination factor NusB [Campylobacter sp.
10_1_50]
gi|384578282|gb|EIF07549.1| Transcription termination protein NusB [Campylobacter concisus
UNSWCD]
Length = 131
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 235 ELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
EL+IL L + E+ T ++INEA++LAK AP+ ING L
Sbjct: 79 ELAILRLGLYEMKFSQTDKAVIINEAIELAKELGSDQAPKFINGVL 124
>gi|33862283|ref|NP_893843.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9313]
gi|33640396|emb|CAE20185.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
9313]
Length = 222
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID + + + W++ + ++ IL LA+ ++T + T + NEAV+LA R+ D
Sbjct: 145 IDASIDAVMEGWRLSRLPR--IDRDILRLAVVDLTALQTPFAVACNEAVELAHRYSDDQG 202
Query: 273 PRIINGCLRTF 283
R+ING LR
Sbjct: 203 RRMINGVLRRL 213
>gi|336434723|ref|ZP_08614445.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336008502|gb|EGN38518.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 132
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
WK +M++ IL L++ + E VG + INEAV+LAKRF + P +NG L
Sbjct: 72 WKTKRMNKADLAILRLAVYEMKWDEDVPVG----VAINEAVELAKRFSGESGPAFVNGVL 127
>gi|108562426|ref|YP_626742.1| transcription antitermination protein NusB [Helicobacter pylori
HPAG1]
gi|208433977|ref|YP_002265643.1| transcription antitermination protein NusB [Helicobacter pylori
G27]
gi|217031745|ref|ZP_03437249.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
gi|298737115|ref|YP_003729645.1| N utilization substance protein B [Helicobacter pylori B8]
gi|308182189|ref|YP_003926316.1| transcription antitermination protein NusB [Helicobacter pylori
PeCan4]
gi|385215270|ref|YP_005775226.1| transcription antitermination protein NusB [Helicobacter pylori
F32]
gi|386751994|ref|YP_006225213.1| transcription antitermination protein NusB [Helicobacter pylori
Shi169]
gi|419419312|ref|ZP_13959564.1| transcription antitermination protein NusB [Helicobacter pylori
NCTC 11637 = CCUG 17874]
gi|420411353|ref|ZP_14910485.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4228]
gi|420416173|ref|ZP_14915284.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4044]
gi|420420747|ref|ZP_14919831.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4161]
gi|420421386|ref|ZP_14920464.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4110]
gi|420429651|ref|ZP_14928681.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-20]
gi|420431567|ref|ZP_14930586.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-16]
gi|420433172|ref|ZP_14932181.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-24]
gi|420438029|ref|ZP_14937006.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-29]
gi|420439680|ref|ZP_14938640.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-30]
gi|420448019|ref|ZP_14946903.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-44]
gi|420451157|ref|ZP_14950011.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-45]
gi|420451332|ref|ZP_14950184.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-6]
gi|420456106|ref|ZP_14954930.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-14]
gi|420461281|ref|ZP_14960072.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-3]
gi|420462974|ref|ZP_14961752.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-4]
gi|420464688|ref|ZP_14963455.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-6]
gi|420469881|ref|ZP_14968592.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-11]
gi|420473406|ref|ZP_14972084.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-19]
gi|420474871|ref|ZP_14973542.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-21]
gi|420478445|ref|ZP_14977098.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-34]
gi|420480009|ref|ZP_14978653.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-1]
gi|420481567|ref|ZP_14980204.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-2]
gi|420485034|ref|ZP_14983652.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-4]
gi|420488203|ref|ZP_14986803.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-11]
gi|420491922|ref|ZP_14990498.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-15]
gi|420501918|ref|ZP_15000459.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-41]
gi|420503564|ref|ZP_15002094.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-62]
gi|420506929|ref|ZP_15005442.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-24b]
gi|420508624|ref|ZP_15007126.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-24c]
gi|420510454|ref|ZP_15008944.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-1b]
gi|420511987|ref|ZP_15010470.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-2b]
gi|420515524|ref|ZP_15013987.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-4c]
gi|420517226|ref|ZP_15015681.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-4d]
gi|420522131|ref|ZP_15020557.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-11b]
gi|420525689|ref|ZP_15024092.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-15b]
gi|420532366|ref|ZP_15030729.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M1]
gi|420533932|ref|ZP_15032283.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M2]
gi|420535737|ref|ZP_15034079.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M3]
gi|420537439|ref|ZP_15035769.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M4]
gi|420539167|ref|ZP_15037486.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M5]
gi|420540925|ref|ZP_15039233.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M6]
gi|420543992|ref|ZP_15042281.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M9]
gi|421709401|ref|ZP_16148761.1| transcription antitermination factor NusB [Helicobacter pylori
R018c]
gi|421711005|ref|ZP_16150349.1| transcription antitermination factor NusB [Helicobacter pylori
R030b]
gi|421712738|ref|ZP_16152070.1| transcription antitermination factor NusB [Helicobacter pylori
R32b]
gi|421722657|ref|ZP_16161916.1| transcription antitermination factor NusB [Helicobacter pylori
R056a]
gi|425433229|ref|ZP_18813766.1| transcription antitermination factor NusB [Helicobacter pylori
GAM100Ai]
gi|119390776|sp|Q1CVF4.1|NUSB_HELPH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|238055475|sp|B5Z6D7.1|NUSB_HELPG RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|107836199|gb|ABF84068.1| N utilization substance protein B [Helicobacter pylori HPAG1]
gi|208431906|gb|ACI26777.1| N utilization substance protein B [Helicobacter pylori G27]
gi|216946592|gb|EEC25192.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
gi|298356309|emb|CBI67181.1| N utilization substance protein B [Helicobacter pylori B8]
gi|308064374|gb|ADO06266.1| transcription antitermination protein NusB [Helicobacter pylori
PeCan4]
gi|317179797|dbj|BAJ57583.1| transcription antitermination protein NusB [Helicobacter pylori
F32]
gi|384372636|gb|EIE28215.1| transcription antitermination protein NusB [Helicobacter pylori
NCTC 11637 = CCUG 17874]
gi|384558252|gb|AFH98719.1| transcription antitermination protein NusB [Helicobacter pylori
Shi169]
gi|393030142|gb|EJB31221.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4228]
gi|393035546|gb|EJB36590.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4161]
gi|393037619|gb|EJB38654.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4044]
gi|393037904|gb|EJB38938.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4110]
gi|393048270|gb|EJB49237.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-20]
gi|393049160|gb|EJB50126.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-16]
gi|393052040|gb|EJB52990.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-24]
gi|393057404|gb|EJB58306.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-29]
gi|393057706|gb|EJB58602.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-30]
gi|393065089|gb|EJB65919.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-45]
gi|393066832|gb|EJB67650.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-44]
gi|393070190|gb|EJB70980.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-6]
gi|393071226|gb|EJB72013.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-14]
gi|393080502|gb|EJB81227.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-4]
gi|393081797|gb|EJB82515.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-3]
gi|393082175|gb|EJB82891.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-6]
gi|393086927|gb|EJB87597.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-11]
gi|393090534|gb|EJB91167.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-19]
gi|393092978|gb|EJB93595.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-21]
gi|393097219|gb|EJB97813.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-34]
gi|393097922|gb|EJB98514.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-1]
gi|393098801|gb|EJB99382.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-2]
gi|393103169|gb|EJC03732.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-4]
gi|393108617|gb|EJC09151.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-15]
gi|393108774|gb|EJC09306.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-11]
gi|393119010|gb|EJC19501.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-24b]
gi|393120050|gb|EJC20539.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-24c]
gi|393122195|gb|EJC22672.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-1b]
gi|393123823|gb|EJC24291.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-4c]
gi|393125040|gb|EJC25506.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-4d]
gi|393130361|gb|EJC30790.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-11b]
gi|393133710|gb|EJC34126.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-15b]
gi|393139997|gb|EJC40370.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M1]
gi|393142155|gb|EJC42509.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M2]
gi|393143385|gb|EJC43729.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M3]
gi|393144994|gb|EJC45325.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M4]
gi|393146852|gb|EJC47177.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M5]
gi|393147545|gb|EJC47869.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M6]
gi|393153198|gb|EJC53491.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-41]
gi|393154953|gb|EJC55230.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-62]
gi|393157050|gb|EJC57311.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-2b]
gi|393158989|gb|EJC59245.1| transcription antitermination factor NusB [Helicobacter pylori Hp
M9]
gi|407211958|gb|EKE81823.1| transcription antitermination factor NusB [Helicobacter pylori
R018c]
gi|407213210|gb|EKE83068.1| transcription antitermination factor NusB [Helicobacter pylori
R030b]
gi|407217539|gb|EKE87372.1| transcription antitermination factor NusB [Helicobacter pylori
R32b]
gi|407226441|gb|EKE96207.1| transcription antitermination factor NusB [Helicobacter pylori
R056a]
gi|410714275|gb|EKQ71755.1| transcription antitermination factor NusB [Helicobacter pylori
GAM100Ai]
Length = 138
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|295839941|ref|ZP_06826874.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
gi|197696775|gb|EDY43708.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
Length = 144
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEA 260
+V+ + AH ID+V+ W +D+ +++ +I+ L E+ V GT +V++EA
Sbjct: 52 LVEGYAAHARRIDEVIAKYSVDWPLDRMP--VVDRNIVRLGAHELVWVDGTPDAVVMDEA 109
Query: 261 VDLAKRFCDGAAPRIINGCLRTFVRNLE 288
V+LAK F +P +NG L F +NL+
Sbjct: 110 VELAKEFSTDDSPAFVNGLLGRF-KNLK 136
>gi|317484770|ref|ZP_07943669.1| transcription antitermination factor NusB [Bilophila wadsworthia
3_1_6]
gi|316923977|gb|EFV45164.1| transcription antitermination factor NusB [Bilophila wadsworthia
3_1_6]
Length = 146
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
++V +D V+ + W++D+ G+I EL++L LA+ E+ ++ INEA++L+ R
Sbjct: 55 SNVKNLDSVIERFSQNWRVDR-LGKI-ELTLLRLAVFEMLYRADVPPKVAINEALELSTR 112
Query: 267 FCDGAAPRIINGCLRTFVRNLEGTANIEASKAS 299
F D A ING L ++ E A KA
Sbjct: 113 FGDAKAKSFINGILDAAIKAQEAGTLTVAGKAD 145
>gi|90410900|ref|ZP_01218914.1| transcription antitermination protein NusB [Photobacterium
profundum 3TCK]
gi|90328113|gb|EAS44424.1| transcription antitermination protein NusB [Photobacterium
profundum 3TCK]
Length = 155
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRSD----EEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T V E ++ SD EEE +A L+AP L + LL VV
Sbjct: 26 ITKGNVAEIEQQFLSDDKFEEEEHQADAPSLAAP------HTDLNYFHDLLNGVVQN--- 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + + +DQ +EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HQELDSKMRPYLSRPLQDLDQ-----MELALLRLAMYEMTKRDDVPYKVVINEAIELAKL 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FGAEDSHKFVNGVL 145
>gi|421716057|ref|ZP_16155369.1| transcription antitermination factor NusB [Helicobacter pylori
R037c]
gi|407221955|gb|EKE91758.1| transcription antitermination factor NusB [Helicobacter pylori
R037c]
Length = 138
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|253314894|ref|ZP_04838107.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
Length = 129
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 55 HEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 110
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 111 FSDDDHYKFINGVL 124
>gi|406960076|gb|EKD87255.1| hypothetical protein ACD_36C00174G0003 [uncultured bacterium]
Length = 90
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 219 PIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIING 278
P W + K+ + ++L+IL LA++E+ +++I+EAV+LAK+F + + + +NG
Sbjct: 27 PEWPLPKISK-----IDLAILRLAVTELVEKKEPPKVIIDEAVELAKQFGNDNSSKFVNG 81
Query: 279 CLRTFVRNL 287
L T +++L
Sbjct: 82 VLGTILKSL 90
>gi|17229252|ref|NP_485800.1| transcription antitermination protein NusB [Nostoc sp. PCC 7120]
gi|22095953|sp|Q8YW56.1|NUSB_NOSS1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|17130850|dbj|BAB73459.1| transcription termination factor [Nostoc sp. PCC 7120]
Length = 211
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+V ++ Q ++ IL +A++E+ + + INEAV+LAKR+ R ING L
Sbjct: 145 WQVTRLAQ-----IDRDILRIAVAEMMFFNLPNSVAINEAVELAKRYSGDEGHRFINGVL 199
Query: 281 R 281
R
Sbjct: 200 R 200
>gi|444415659|ref|ZP_21211889.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0199]
gi|444279300|gb|ELU84703.1| transcription antitermination factor NusB [Streptococcus pneumoniae
PNI0199]
Length = 140
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
INEA++LAK F D + ING L FV
Sbjct: 109 INEAIELAKDFSDQKSACFINGLLSQFV 136
>gi|342218563|ref|ZP_08711174.1| transcription antitermination factor NusB [Megasphaera sp. UPII
135-E]
gi|341589624|gb|EGS32896.1| transcription antitermination factor NusB [Megasphaera sp. UPII
135-E]
Length = 141
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
L + +L+ V D H +D ++ + W D E +I+ LA++E+ V
Sbjct: 47 LASYVTQLVQTVTD----HKAELDAIISELAIDW--DITRFNYTEKNIMRLALAEL-VYN 99
Query: 251 TRH---QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
T +++NEAV LAK FC A R ING L TF R
Sbjct: 100 TEEIPAAVILNEAVMLAKEFCGEKAARFINGMLGTFYR 137
>gi|210134202|ref|YP_002300641.1| transcription antitermination protein NusB [Helicobacter pylori
P12]
gi|383749064|ref|YP_005424167.1| transcription antitermination protein NusB [Helicobacter pylori
ELS37]
gi|420411007|ref|ZP_14910143.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4200]
gi|420419253|ref|ZP_14918343.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4076]
gi|420456250|ref|ZP_14955072.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-16]
gi|420459401|ref|ZP_14958203.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-26]
gi|420461102|ref|ZP_14959897.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-27]
gi|421720662|ref|ZP_16159942.1| transcription antitermination factor NusB [Helicobacter pylori
R046Wa]
gi|421720917|ref|ZP_16160194.1| transcription antitermination factor NusB [Helicobacter pylori
R055a]
gi|238055353|sp|B6JPA0.1|NUSB_HELP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|210132170|gb|ACJ07161.1| N utilization substance protein B [Helicobacter pylori P12]
gi|380873810|gb|AFF19591.1| transcription antitermination protein NusB [Helicobacter pylori
ELS37]
gi|393026220|gb|EJB27320.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4200]
gi|393031159|gb|EJB32231.1| transcription antitermination factor NusB [Helicobacter pylori
NQ4076]
gi|393072091|gb|EJB72871.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-26]
gi|393074676|gb|EJB75435.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-27]
gi|393076348|gb|EJB77101.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-16]
gi|407219254|gb|EKE89071.1| transcription antitermination factor NusB [Helicobacter pylori
R046Wa]
gi|407225701|gb|EKE95471.1| transcription antitermination factor NusB [Helicobacter pylori
R055a]
Length = 138
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|15924514|ref|NP_372048.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus Mu50]
gi|15927105|ref|NP_374638.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus N315]
gi|21283206|ref|NP_646294.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus MW2]
gi|49486361|ref|YP_043582.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57650481|ref|YP_186410.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus COL]
gi|88195331|ref|YP_500135.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148268009|ref|YP_001246952.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus JH9]
gi|150394076|ref|YP_001316751.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus JH1]
gi|151221641|ref|YP_001332463.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156979843|ref|YP_001442102.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus Mu3]
gi|221140055|ref|ZP_03564548.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253732178|ref|ZP_04866343.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253733226|ref|ZP_04867391.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006311|ref|ZP_05144912.2| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257425650|ref|ZP_05602074.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428311|ref|ZP_05604709.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430948|ref|ZP_05607328.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433637|ref|ZP_05609995.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus E1410]
gi|257436550|ref|ZP_05612594.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus M876]
gi|257793601|ref|ZP_05642580.1| transcription antitermination factor NusB [Staphylococcus aureus
A9781]
gi|258411099|ref|ZP_05681379.1| transcription antitermination protein NusB [Staphylococcus aureus
A9763]
gi|258420097|ref|ZP_05683052.1| transcription antitermination factor NusB [Staphylococcus aureus
A9719]
gi|258423178|ref|ZP_05686071.1| transcription antitermination factor NusB [Staphylococcus aureus
A9635]
gi|258437357|ref|ZP_05689341.1| transcription antitermination protein NusB [Staphylococcus aureus
A9299]
gi|258443563|ref|ZP_05691902.1| transcription antitermination protein NusB [Staphylococcus aureus
A8115]
gi|258446770|ref|ZP_05694924.1| transcription antitermination protein NusB [Staphylococcus aureus
A6300]
gi|258448684|ref|ZP_05696796.1| transcription antitermination protein NusB [Staphylococcus aureus
A6224]
gi|258451182|ref|ZP_05699217.1| transcription antitermination protein NusB [Staphylococcus aureus
A5948]
gi|258453501|ref|ZP_05701479.1| transcription antitermination protein NusB [Staphylococcus aureus
A5937]
gi|262051191|ref|ZP_06023415.1| transcription antitermination protein NusB [Staphylococcus aureus
930918-3]
gi|269203154|ref|YP_003282423.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus ED98]
gi|282893026|ref|ZP_06301260.1| transcription antitermination factor NusB [Staphylococcus aureus
A8117]
gi|282911163|ref|ZP_06318965.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914332|ref|ZP_06322118.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus M899]
gi|282916795|ref|ZP_06324553.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus D139]
gi|282919301|ref|ZP_06327036.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C427]
gi|282924626|ref|ZP_06332294.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C101]
gi|282924773|ref|ZP_06332440.1| transcription antitermination factor NusB [Staphylococcus aureus
A9765]
gi|282928996|ref|ZP_06336583.1| transcription antitermination factor NusB [Staphylococcus aureus
A10102]
gi|283770601|ref|ZP_06343493.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus H19]
gi|284024584|ref|ZP_06378982.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 132]
gi|293503407|ref|ZP_06667254.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510423|ref|ZP_06669129.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus M809]
gi|293530963|ref|ZP_06671645.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus M1015]
gi|295406647|ref|ZP_06816452.1| transcription antitermination factor NusB [Staphylococcus aureus
A8819]
gi|296275119|ref|ZP_06857626.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus MR1]
gi|297207756|ref|ZP_06924191.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297245770|ref|ZP_06929635.1| transcription antitermination factor NusB [Staphylococcus aureus
A8796]
gi|300911837|ref|ZP_07129280.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus TCH70]
gi|304380887|ref|ZP_07363547.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014733|ref|YP_005290969.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus VC40]
gi|379021307|ref|YP_005297969.1| transcription termination protein NusB [Staphylococcus aureus
subsp. aureus M013]
gi|384547758|ref|YP_005737011.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus ED133]
gi|384550352|ref|YP_005739604.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus JKD6159]
gi|384862127|ref|YP_005744847.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384864747|ref|YP_005750106.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|384870067|ref|YP_005752781.1| N utilization substance protein B -like protein [Staphylococcus
aureus subsp. aureus T0131]
gi|386831135|ref|YP_006237789.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|387143132|ref|YP_005731525.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus TW20]
gi|387150668|ref|YP_005742232.1| Transcription termination protein NusB [Staphylococcus aureus
04-02981]
gi|387602865|ref|YP_005734386.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ST398]
gi|387780617|ref|YP_005755415.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus LGA251]
gi|404478875|ref|YP_006710305.1| N utilization substance protein B [Staphylococcus aureus 08BA02176]
gi|415692642|ref|ZP_11454562.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS03]
gi|416839993|ref|ZP_11903312.1| transcription antitermination protein NusB [Staphylococcus aureus
O11]
gi|416845802|ref|ZP_11906203.1| transcription antitermination protein NusB [Staphylococcus aureus
O46]
gi|417649217|ref|ZP_12299021.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21189]
gi|417650914|ref|ZP_12300677.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21172]
gi|417654431|ref|ZP_12304150.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21193]
gi|417797388|ref|ZP_12444584.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21305]
gi|417798954|ref|ZP_12446108.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21310]
gi|417802885|ref|ZP_12449937.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21318]
gi|417890207|ref|ZP_12534286.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21200]
gi|417897930|ref|ZP_12541856.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21259]
gi|417901331|ref|ZP_12545207.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21266]
gi|417905461|ref|ZP_12549272.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21269]
gi|418277350|ref|ZP_12891937.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21178]
gi|418284182|ref|ZP_12896914.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21202]
gi|418284978|ref|ZP_12897678.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21209]
gi|418308751|ref|ZP_12920354.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21194]
gi|418310161|ref|ZP_12921711.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21331]
gi|418313200|ref|ZP_12924694.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21334]
gi|418316452|ref|ZP_12927890.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21340]
gi|418319438|ref|ZP_12930818.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21232]
gi|418322018|ref|ZP_12933357.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VCU006]
gi|418424675|ref|ZP_12997789.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427669|ref|ZP_13000674.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS2]
gi|418430511|ref|ZP_13003422.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418433654|ref|ZP_13006246.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS4]
gi|418437149|ref|ZP_13008945.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440049|ref|ZP_13011750.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443067|ref|ZP_13014666.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS7]
gi|418449143|ref|ZP_13020529.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS9]
gi|418451956|ref|ZP_13023290.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS10]
gi|418454949|ref|ZP_13026208.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418457827|ref|ZP_13029026.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418558887|ref|ZP_13123434.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21252]
gi|418562619|ref|ZP_13127076.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21262]
gi|418567190|ref|ZP_13131555.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21272]
gi|418569528|ref|ZP_13133854.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21283]
gi|418579451|ref|ZP_13143546.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418600002|ref|ZP_13163476.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21343]
gi|418640261|ref|ZP_13202493.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-3]
gi|418645195|ref|ZP_13207323.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-55]
gi|418656681|ref|ZP_13218480.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-105]
gi|418662167|ref|ZP_13223721.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-122]
gi|418875463|ref|ZP_13429720.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418878443|ref|ZP_13432678.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418881209|ref|ZP_13435426.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418884058|ref|ZP_13438251.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418886791|ref|ZP_13440939.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418889340|ref|ZP_13443473.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418895289|ref|ZP_13449384.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418903833|ref|ZP_13457874.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906471|ref|ZP_13460497.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418912137|ref|ZP_13466118.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG547]
gi|418914624|ref|ZP_13468596.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920607|ref|ZP_13474539.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418925786|ref|ZP_13479688.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928876|ref|ZP_13482762.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418931831|ref|ZP_13485666.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418934496|ref|ZP_13488318.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418949963|ref|ZP_13502178.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-160]
gi|418988592|ref|ZP_13536264.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1835]
gi|418991454|ref|ZP_13539115.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1096]
gi|421150545|ref|ZP_15610201.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|422746182|ref|ZP_16800115.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424769014|ref|ZP_18196251.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CM05]
gi|424785361|ref|ZP_18212164.1| Transcription termination protein NusB [Staphylococcus aureus CN79]
gi|440707356|ref|ZP_20888055.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21282]
gi|440734977|ref|ZP_20914588.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443635613|ref|ZP_21119741.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21236]
gi|443639853|ref|ZP_21123853.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21196]
gi|448740647|ref|ZP_21722623.1| transcription antitermination protein NusB [Staphylococcus aureus
KT/314250]
gi|448743042|ref|ZP_21724956.1| transcription antitermination protein NusB [Staphylococcus aureus
KT/Y21]
gi|54037923|sp|P65578.1|NUSB_STAAN RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|54037924|sp|P65579.1|NUSB_STAAW RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|54041674|sp|P65577.1|NUSB_STAAM RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|56749194|sp|Q6G941.1|NUSB_STAAS RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|71153022|sp|Q5HFP7.1|NUSB_STAAC RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|119390828|sp|Q2FY45.1|NUSB_STAA8 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|166215722|sp|A7X2Q3.1|NUSB_STAA1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|172048899|sp|A6QH69.1|NUSB_STAAE RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|189035909|sp|A6U1Z6.1|NUSB_STAA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|189035910|sp|A5IT53.1|NUSB_STAA9 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|13701323|dbj|BAB42617.1| SA1355 [Staphylococcus aureus subsp. aureus N315]
gi|14247295|dbj|BAB57686.1| N utilization substance protein B homolog [Staphylococcus aureus
subsp. aureus Mu50]
gi|21204646|dbj|BAB95342.1| MW1477 [Staphylococcus aureus subsp. aureus MW2]
gi|49244804|emb|CAG43254.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57284667|gb|AAW36761.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus COL]
gi|87202889|gb|ABD30699.1| N utilization substance protein B, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|147741078|gb|ABQ49376.1| NusB antitermination factor [Staphylococcus aureus subsp. aureus
JH9]
gi|149946528|gb|ABR52464.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus JH1]
gi|150374441|dbj|BAF67701.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156721978|dbj|BAF78395.1| hypothetical protein SAHV_1512 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253723967|gb|EES92696.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253728766|gb|EES97495.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus TCH130]
gi|257271344|gb|EEV03490.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275152|gb|EEV06639.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278378|gb|EEV09014.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281730|gb|EEV11867.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus E1410]
gi|257283901|gb|EEV14024.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus M876]
gi|257787573|gb|EEV25913.1| transcription antitermination factor NusB [Staphylococcus aureus
A9781]
gi|257840249|gb|EEV64713.1| transcription antitermination protein NusB [Staphylococcus aureus
A9763]
gi|257843808|gb|EEV68202.1| transcription antitermination factor NusB [Staphylococcus aureus
A9719]
gi|257846628|gb|EEV70649.1| transcription antitermination factor NusB [Staphylococcus aureus
A9635]
gi|257848562|gb|EEV72550.1| transcription antitermination protein NusB [Staphylococcus aureus
A9299]
gi|257850969|gb|EEV74912.1| transcription antitermination protein NusB [Staphylococcus aureus
A8115]
gi|257854345|gb|EEV77294.1| transcription antitermination protein NusB [Staphylococcus aureus
A6300]
gi|257857962|gb|EEV80851.1| transcription antitermination protein NusB [Staphylococcus aureus
A6224]
gi|257861237|gb|EEV84050.1| transcription antitermination protein NusB [Staphylococcus aureus
A5948]
gi|257864232|gb|EEV86982.1| transcription antitermination protein NusB [Staphylococcus aureus
A5937]
gi|259160828|gb|EEW45848.1| transcription antitermination protein NusB [Staphylococcus aureus
930918-3]
gi|262075444|gb|ACY11417.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus ED98]
gi|269941015|emb|CBI49399.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus TW20]
gi|282313461|gb|EFB43856.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C101]
gi|282317111|gb|EFB47485.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C427]
gi|282319282|gb|EFB49634.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus D139]
gi|282321513|gb|EFB51838.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus M899]
gi|282324858|gb|EFB55168.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282589403|gb|EFB94494.1| transcription antitermination factor NusB [Staphylococcus aureus
A10102]
gi|282592780|gb|EFB97786.1| transcription antitermination factor NusB [Staphylococcus aureus
A9765]
gi|282764344|gb|EFC04470.1| transcription antitermination factor NusB [Staphylococcus aureus
A8117]
gi|283460748|gb|EFC07838.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus H19]
gi|283470803|emb|CAQ50014.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ST398]
gi|285817207|gb|ADC37694.1| Transcription termination protein NusB [Staphylococcus aureus
04-02981]
gi|290920231|gb|EFD97297.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus M1015]
gi|291095073|gb|EFE25338.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466787|gb|EFF09307.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus M809]
gi|294968394|gb|EFG44418.1| transcription antitermination factor NusB [Staphylococcus aureus
A8819]
gi|296887773|gb|EFH26671.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297177421|gb|EFH36673.1| transcription antitermination factor NusB [Staphylococcus aureus
A8796]
gi|298694807|gb|ADI98029.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus ED133]
gi|300886083|gb|EFK81285.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus TCH70]
gi|302333201|gb|ADL23394.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302751356|gb|ADL65533.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340614|gb|EFM06548.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312829914|emb|CBX34756.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315129802|gb|EFT85792.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS03]
gi|320140590|gb|EFW32444.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MRSA131]
gi|323440422|gb|EGA98134.1| transcription antitermination protein NusB [Staphylococcus aureus
O11]
gi|323443196|gb|EGB00814.1| transcription antitermination protein NusB [Staphylococcus aureus
O46]
gi|329314202|gb|AEB88615.1| N utilization substance protein B -like protein [Staphylococcus
aureus subsp. aureus T0131]
gi|329727098|gb|EGG63554.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21172]
gi|329728323|gb|EGG64760.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21189]
gi|329730817|gb|EGG67195.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21193]
gi|334266880|gb|EGL85350.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21305]
gi|334273824|gb|EGL92161.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21318]
gi|334275116|gb|EGL93417.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21310]
gi|341843737|gb|EGS84959.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21269]
gi|341845170|gb|EGS86372.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21266]
gi|341849432|gb|EGS90575.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21259]
gi|341855900|gb|EGS96744.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21200]
gi|344177719|emb|CCC88198.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus LGA251]
gi|359830616|gb|AEV78594.1| Transcription termination protein NusB [Staphylococcus aureus
subsp. aureus M013]
gi|365165046|gb|EHM56876.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21202]
gi|365171989|gb|EHM62734.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21209]
gi|365173640|gb|EHM64129.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21178]
gi|365224633|gb|EHM65898.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VCU006]
gi|365236471|gb|EHM77360.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21334]
gi|365237337|gb|EHM78186.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21194]
gi|365237618|gb|EHM78464.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21331]
gi|365240557|gb|EHM81329.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21232]
gi|365241136|gb|EHM81891.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21340]
gi|371973723|gb|EHO91071.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21262]
gi|371976237|gb|EHO93527.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21252]
gi|371982894|gb|EHP00043.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21272]
gi|371985657|gb|EHP02718.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21283]
gi|374363430|gb|AEZ37535.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus VC40]
gi|374395591|gb|EHQ66854.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21343]
gi|375014825|gb|EHS08496.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-3]
gi|375024028|gb|EHS17473.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-55]
gi|375032844|gb|EHS26063.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-105]
gi|375037112|gb|EHS30166.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-122]
gi|375377984|gb|EHS81413.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus IS-160]
gi|377694565|gb|EHT18930.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377695095|gb|EHT19459.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377697478|gb|EHT21833.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377713009|gb|EHT37222.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714393|gb|EHT38594.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377717685|gb|EHT41860.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377722394|gb|EHT46520.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG547]
gi|377723576|gb|EHT47701.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377725744|gb|EHT49857.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377730952|gb|EHT55010.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377738788|gb|EHT62797.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742848|gb|EHT66833.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744855|gb|EHT68832.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377752848|gb|EHT76766.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1524]
gi|377758126|gb|EHT82014.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377763376|gb|EHT87232.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377764333|gb|EHT88186.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC348]
gi|377770019|gb|EHT93785.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770590|gb|EHT94351.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC128]
gi|385196527|emb|CCG16156.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|387717957|gb|EIK05952.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS2]
gi|387718251|gb|EIK06235.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387719454|gb|EIK07399.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS1]
gi|387724878|gb|EIK12509.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727137|gb|EIK14669.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS5]
gi|387730199|gb|EIK17606.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS6]
gi|387736743|gb|EIK23831.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus VRS7]
gi|387736906|gb|EIK23992.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS9]
gi|387744837|gb|EIK31601.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS10]
gi|387745002|gb|EIK31764.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387746595|gb|EIK33324.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus VRS11b]
gi|394329935|gb|EJE56037.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|402348405|gb|EJU83397.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CM05]
gi|404440364|gb|AFR73557.1| putative N utilization substance protein B [Staphylococcus aureus
08BA02176]
gi|421956771|gb|EKU09100.1| Transcription termination protein NusB [Staphylococcus aureus CN79]
gi|436431072|gb|ELP28426.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436506112|gb|ELP41951.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21282]
gi|443406128|gb|ELS64712.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21196]
gi|443409254|gb|ELS67752.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21236]
gi|445548614|gb|ELY16864.1| transcription antitermination protein NusB [Staphylococcus aureus
KT/314250]
gi|445563729|gb|ELY19886.1| transcription antitermination protein NusB [Staphylococcus aureus
KT/Y21]
Length = 129
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 55 HEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 110
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 111 FSDDDHYKFINGVL 124
>gi|420444632|ref|ZP_14943549.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-42]
gi|393064252|gb|EJB65091.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-42]
Length = 138
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|313897409|ref|ZP_07830952.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
gi|346314429|ref|ZP_08855950.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373121283|ref|ZP_09535151.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 21_3]
gi|422327295|ref|ZP_16408322.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 6_1_45]
gi|312957779|gb|EFR39404.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
gi|345906787|gb|EGX76511.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371663989|gb|EHO29173.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665301|gb|EHO30466.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 21_3]
Length = 125
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
IDK+ + + W + +E +IL +A E+ + IVI+EAV LAK++CD
Sbjct: 57 IDKINAALRQDWTFARLG--FVEQAILMMAACELDLETAPKAIVIDEAVTLAKKYCDDET 114
Query: 273 PRIINGCL 280
R+ING L
Sbjct: 115 YRLINGVL 122
>gi|420454548|ref|ZP_14953381.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-8]
gi|393067869|gb|EJB68676.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-8]
Length = 138
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|420422883|ref|ZP_14921957.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-4]
gi|393042834|gb|EJB43839.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-4]
Length = 138
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYTEPNTPKFLNAILDSLSKKL 132
>gi|354594014|ref|ZP_09012057.1| hypothetical protein CIN_07530 [Commensalibacter intestini A911]
gi|353673125|gb|EHD14821.1| hypothetical protein CIN_07530 [Commensalibacter intestini A911]
Length = 172
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
I+ K +P W + ++D IL +I L +S+ + T+ ++INE +D+ FCDG
Sbjct: 85 ILTKALPKDWPLHRLDPIIRAILRAAITEL-LSDASEPPTK--VIINEYIDVTHAFCDGD 141
Query: 272 APRIINGCLRTFVRNLEGT 290
+ING L T R L T
Sbjct: 142 ESSLINGILDTIGRQLRPT 160
>gi|307720293|ref|YP_003891433.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
gi|306978386|gb|ADN08421.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
Length = 135
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H+ IDK + K W ++ +E + L LA EI +VINEAV++ K F
Sbjct: 56 HIEEIDKAIVEHLKEWDFERLGA--IERATLRLATYEILFGELDSAVVINEAVEITKSFG 113
Query: 269 DGAAPRIINGCLRTFVRN 286
+P+ ING L ++
Sbjct: 114 TEQSPKFINGVLDAIAKD 131
>gi|28897457|ref|NP_797062.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
RIMD 2210633]
gi|153840491|ref|ZP_01993158.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AQ3810]
gi|260364269|ref|ZP_05776968.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
K5030]
gi|260876417|ref|ZP_05888772.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AN-5034]
gi|260898688|ref|ZP_05907184.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
Peru-466]
gi|260899217|ref|ZP_05907612.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AQ4037]
gi|433656959|ref|YP_007274338.1| Transcription termination protein NusB [Vibrio parahaemolyticus
BB22OP]
gi|31076798|sp|Q87RU3.1|NUSB_VIBPA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|28805669|dbj|BAC58946.1| N utilization substance protein B [Vibrio parahaemolyticus RIMD
2210633]
gi|149745845|gb|EDM56975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AQ3810]
gi|308086855|gb|EFO36550.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
Peru-466]
gi|308092966|gb|EFO42661.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AN-5034]
gi|308106640|gb|EFO44180.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AQ4037]
gi|308113746|gb|EFO51286.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
K5030]
gi|432507647|gb|AGB09164.1| Transcription termination protein NusB [Vibrio parahaemolyticus
BB22OP]
Length = 155
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 153 VTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI 212
+T E V +E S ++ E E+ ++ P L + + + R+LL VV +H +
Sbjct: 26 ITKENVATIEEQFLSGDKYD--EEELRASEPALAAPETDVAYFRELLSGVVL---SHAEL 80
Query: 213 IDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDG 270
K+ P + + + +D ++EL++L LAM E+T +++VINEA++LAK F
Sbjct: 81 DSKIRPYVSRPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135
Query: 271 AAPRIINGCL 280
+ + +NG L
Sbjct: 136 DSHKFVNGVL 145
>gi|428221224|ref|YP_007105394.1| NusB antitermination factor [Synechococcus sp. PCC 7502]
gi|427994564|gb|AFY73259.1| NusB antitermination factor [Synechococcus sp. PCC 7502]
Length = 204
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
IDK++ W++++ + ++ IL +A +EI + I +NEAV+LAKR+
Sbjct: 130 IDKLITGALVDWQLNRLSQ--VDQHILRIATAEIAYLQVPKAIAVNEAVELAKRYSSQDG 187
Query: 273 PRIINGCLRTF 283
R ING LR
Sbjct: 188 YRFINGVLRNI 198
>gi|427731614|ref|YP_007077851.1| NusB antitermination factor [Nostoc sp. PCC 7524]
gi|427367533|gb|AFY50254.1| NusB antitermination factor [Nostoc sp. PCC 7524]
Length = 209
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
IID+ + W++ + A ++ IL +A++E+ + ++ INEAV+LAKR+
Sbjct: 133 IIDEQISTALVDWQVTRLAQ--IDRDILRIAVAEMLCLNLPDRVAINEAVELAKRYSGDE 190
Query: 272 APRIINGCLR 281
R ING LR
Sbjct: 191 GHRFINGVLR 200
>gi|417320584|ref|ZP_12107127.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
10329]
gi|328472533|gb|EGF43396.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
10329]
Length = 151
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 153 VTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI 212
+T E V +E S ++ E E+ ++ P L + + + R+LL VV +H +
Sbjct: 22 ITKENVATIEEQFLSGDKYD--EEELRASEPALAAPETDVAYFRELLSGVVL---SHAEL 76
Query: 213 IDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDG 270
K+ P + + + +D ++EL++L LAM E+T +++VINEA++LAK F
Sbjct: 77 DSKIRPYVSRPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 131
Query: 271 AAPRIINGCL 280
+ + +NG L
Sbjct: 132 DSHKFVNGVL 141
>gi|296273814|ref|YP_003656445.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299]
gi|296097988|gb|ADG93938.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299]
Length = 132
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+E SIL LA+ EI I+INEA++L+KR AP+ ING L
Sbjct: 79 VEKSILRLAIYEILFETLDRAIIINEAIELSKRLASDGAPKFINGVL 125
>gi|33864549|ref|NP_896108.1| transcription antitermination protein NusB [Synechococcus sp. WH
8102]
gi|33632072|emb|CAE06525.1| NusB family protein [Synechococcus sp. WH 8102]
Length = 211
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 270
ID + + + W++ R+ L+ IL LA+ ++ +GT + +EAV+LA R+ D
Sbjct: 134 IDAELDSVMEGWRL----SRLPRLDRDILRLAVVDLRDLGTPAPVAFSEAVELANRYSDE 189
Query: 271 AAPRIINGCLRTF 283
R+ING LR F
Sbjct: 190 QGRRMINGVLRRF 202
>gi|420471477|ref|ZP_14970175.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-18]
gi|393091941|gb|EJB92567.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-18]
Length = 138
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|203284032|ref|YP_002221772.1| N-utilization substance protein B [Borrelia duttonii Ly]
gi|201083475|gb|ACH93066.1| N-utilization substance protein B [Borrelia duttonii Ly]
Length = 146
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 21/124 (16%)
Query: 170 EESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPI---WKVWKM 226
EE+ I+ L KL YS V V +D ++ IDK++ I W++ +M
Sbjct: 37 EENGID---LDGDLKLFYS-----------VLVNGTYD-NLESIDKLISGISLNWRLDRM 81
Query: 227 DQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
D+ IL +S+ L ++ V +++I+EA+ +AK++ + + + +NG L +++
Sbjct: 82 DKVDLAILRMSVYSLKFQDLDV---PKRVIIDEAILIAKKYGNKNSDKFVNGILDALLKD 138
Query: 287 LEGT 290
+E +
Sbjct: 139 MESS 142
>gi|297566828|ref|YP_003685800.1| NusB antitermination factor [Meiothermus silvanus DSM 9946]
gi|296851277|gb|ADH64292.1| NusB antitermination factor [Meiothermus silvanus DSM 9946]
Length = 156
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F R+LL + + H ID+V+ + W Q A +L++L LA E+ T
Sbjct: 55 LEFARRLL----EGYQRHESEIDEVLGNTIQGWSFGQMAK--TDLAVLRLAAYEMLYEPT 108
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASK 300
+ +I AV +AKR+ + R +NG L ++ +E A I+A + K
Sbjct: 109 PYAPLIEVAVKIAKRYGGEDSGRFVNGVLGRLLKRIE-NAEIQAVEKEK 156
>gi|203287574|ref|YP_002222589.1| N-utilization substance protein B [Borrelia recurrentis A1]
gi|201084794|gb|ACH94368.1| N-utilization substance protein B [Borrelia recurrentis A1]
Length = 146
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 21/124 (16%)
Query: 170 EESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPI---WKVWKM 226
EE+ I+ L KL YS V V +D ++ IDK++ I W++ +M
Sbjct: 37 EENGID---LDGDLKLFYS-----------VLVNGTYD-NLESIDKLISGISLNWRLDRM 81
Query: 227 DQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
D+ IL +S+ L ++ V +++I+EA+ +AK++ + + + +NG L +++
Sbjct: 82 DKVDLAILRMSVYSLKFQDLDV---PKRVIIDEAILIAKKYGNKNSDKFVNGILDALLKD 138
Query: 287 LEGT 290
+E +
Sbjct: 139 MESS 142
>gi|82751129|ref|YP_416870.1| transcription antitermination protein NusB [Staphylococcus aureus
RF122]
gi|119390829|sp|Q2YYB7.1|NUSB_STAAB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|82656660|emb|CAI81086.1| probable N utilization substance protein B [Staphylococcus aureus
RF122]
Length = 129
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 55 HEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 110
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 111 FSDDDHYKFINGVL 124
>gi|417897007|ref|ZP_12540950.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21235]
gi|341840273|gb|EGS81793.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21235]
Length = 129
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 55 HEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 110
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 111 FSDDDHYKFINGVL 124
>gi|224476635|ref|YP_002634241.1| transcription antitermination protein NusB [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254772655|sp|B9DNQ0.1|NUSB_STACT RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|222421242|emb|CAL28056.1| putative N utilization substance protein NusB [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 128
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMS 244
Y L F L+ V D H ++D+ + K WK+ R+L+ IL +A
Sbjct: 37 YPDLEFDFIYWLVSGVKD----HEPVLDEKIQNNLKDWKI----SRLLKTDRIILRMAAF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
E+ T +++INEAV+LAK++ D R ING L
Sbjct: 89 ELANSDTPPKVIINEAVELAKQYSDDDHYRFINGVL 124
>gi|429765584|ref|ZP_19297869.1| transcription antitermination factor NusB [Clostridium celatum DSM
1785]
gi|429186035|gb|EKY26998.1| transcription antitermination factor NusB [Clostridium celatum DSM
1785]
Length = 135
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID+V+ WK+D+ + + L+IL LA+ E+ + ++ INEAV+L K++ D
Sbjct: 61 IDEVIEKALVNWKLDRISK--VNLTILRLAVGEMMFIDDVPGRVAINEAVELTKKYSDDK 118
Query: 272 APRIINGCLRTFVRNLE 288
+ +NG L ++ +E
Sbjct: 119 SCSFVNGVLDKVLKEVE 135
>gi|355624225|ref|ZP_09047586.1| transcription antitermination factor NusB [Clostridium sp.
7_3_54FAA]
gi|354821986|gb|EHF06361.1| transcription antitermination factor NusB [Clostridium sp.
7_3_54FAA]
Length = 147
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 156 ETVEEADELLRSDEEESAI---EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI 212
ET E+ +E EE + E+E+L +P V+ + + ++ + D+ ++
Sbjct: 24 ETKEQMEEYFTEPVEEVSAPGGESEILHSPALDVFDGGYVTNKVERIIEKIPDLDSRINE 83
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
I K W +M + +EL+IL LA+ EI ++ INEAV+LAK+F
Sbjct: 84 IAKG----WTTKRMGK-----VELTILRLALFEIQYDEDVPEKVAINEAVELAKKFGGDD 134
Query: 272 APRIINGCLRTFV 284
+P +NG L V
Sbjct: 135 SPSFVNGILAKLV 147
>gi|379795885|ref|YP_005325883.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872875|emb|CCE59214.1| N utilization substance protein B homolog (NusB protein)
[Staphylococcus aureus subsp. aureus MSHR1132]
Length = 129
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 55 HEPVLDETISPYLKDWTI----SRLLKTDRIILRMATYEILHSDTPSKVVMNEAVELTKQ 110
Query: 267 FCDGAAPRIINGCL 280
F D + +NG L
Sbjct: 111 FSDDDHYKFVNGVL 124
>gi|343497588|ref|ZP_08735651.1| transcription antitermination protein NusB [Vibrio nigripulchritudo
ATCC 27043]
gi|342817780|gb|EGU52656.1| transcription antitermination protein NusB [Vibrio nigripulchritudo
ATCC 27043]
Length = 151
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE LSAP V + R LL VV +
Sbjct: 22 ITKENVATVEEQFLSGGKYDEEEHHASEPSLSAPETDV------AYFRDLLSGVVL---S 72
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 73 HTELDSKLRPYLSRPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 127
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 128 FAAEDSHKFVNGVL 141
>gi|219847234|ref|YP_002461667.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
gi|254772623|sp|B8G2S7.1|NUSB_CHLAD RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|219541493|gb|ACL23231.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
Length = 150
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVV---PPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
F R+L V W+ H +D+++ P W V +M +L +++ L + E+
Sbjct: 51 FLRRL---VFGTWE-HRSYLDRIIEEAAPNWPVNQMPGVDKAVLRIALFELLIDEVE--K 104
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
T + VINEAV+LAK F + R +NG L T V
Sbjct: 105 TPIKAVINEAVELAKEFGSDNSSRFVNGVLGTVV 138
>gi|420428012|ref|ZP_14927047.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-17]
gi|420441359|ref|ZP_14940305.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-36]
gi|420483268|ref|ZP_14981898.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-3]
gi|420498554|ref|ZP_14997111.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-26]
gi|420515277|ref|ZP_15013743.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-3b]
gi|393045671|gb|EJB46651.1| transcription antitermination factor NusB [Helicobacter pylori Hp
A-17]
gi|393060420|gb|EJB61292.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-36]
gi|393102493|gb|EJC03057.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-3]
gi|393152533|gb|EJC52829.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-26]
gi|393155485|gb|EJC55758.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-3b]
Length = 138
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|325569721|ref|ZP_08145768.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
12755]
gi|420262484|ref|ZP_14765125.1| N utilization substance protein B [Enterococcus sp. C1]
gi|325157277|gb|EGC69442.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
12755]
gi|394770241|gb|EJF50045.1| N utilization substance protein B [Enterococcus sp. C1]
Length = 154
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
WK+ ++ + ++++IL +A+ E I V +++ +NEA++LAK F D + + +NG
Sbjct: 83 WKIQRLSK-----MDVTILRIALYEMIYVDNVPNRVALNEAIELAKTFSDDQSRKFVNGI 137
Query: 280 LRTFVRNLEGTAN 292
L T + LE N
Sbjct: 138 LSTVNQELETKNN 150
>gi|375091698|ref|ZP_09737986.1| ribosomal RNA small subunit methyltransferase B [Helcococcus kunzii
ATCC 51366]
gi|374562585|gb|EHR33912.1| ribosomal RNA small subunit methyltransferase B [Helcococcus kunzii
ATCC 51366]
Length = 422
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F R+L+ VV+ +I+ K K+ K+D+ L+I+ +A+ E+ + T+
Sbjct: 35 FLRQLVYGVVENKIYLDYILQKSSKN--KLEKLDKDI-----LNIVRIALYELKFLSTKK 87
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 302
VINEAV+ AK+ +A +NG LR RN++ + I+ K++
Sbjct: 88 YAVINEAVNNAKKI-KFSAKGFVNGVLRNIDRNMDELSEIKGKDNDKKL 135
>gi|420532155|ref|ZP_15030523.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-28b]
gi|393135104|gb|EJC35507.1| transcription antitermination factor NusB [Helicobacter pylori Hp
P-28b]
Length = 138
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|357038619|ref|ZP_09100416.1| NusB antitermination factor [Desulfotomaculum gibsoniae DSM 7213]
gi|355359411|gb|EHG07173.1| NusB antitermination factor [Desulfotomaculum gibsoniae DSM 7213]
Length = 133
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-G 250
L F L+ +DK D +DK + + W++++ A ++ +IL LA+ E+
Sbjct: 42 LEFASHLVHGTLDKLDE----LDKTIAGYSREWQVERMAA--VDRNILRLALYEMLYARD 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+ INEAV++AKRF + + ING L VR
Sbjct: 96 IPPNVSINEAVEMAKRFGGAESGKFINGILGAVVR 130
>gi|270308448|ref|YP_003330506.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
gi|270154340|gb|ACZ62178.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
Length = 143
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F +L AVV H ++D+ + W ++Q + ++ ++L LA+ EI H
Sbjct: 46 FIFRLTNAVV----KHKELLDENIRQFASAWPVEQLS--YIDRNVLRLAIFEII-----H 94
Query: 254 Q------IVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 292
+ + INEAV+LAK F ++ R ING L + + L TAN
Sbjct: 95 ENDVPVKVAINEAVELAKSFGGNSSARFINGVLSSVSKALADTAN 139
>gi|257875394|ref|ZP_05655047.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
gi|257809560|gb|EEV38380.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
Length = 154
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
WK+ ++ + ++++IL +A+ E I V +++ +NEA++LAK F D + + +NG
Sbjct: 83 WKIQRLSK-----MDVTILRIALYEMIYVDNVPNRVALNEAIELAKTFSDDQSRKFVNGI 137
Query: 280 LRTFVRNLEGTAN 292
L T + LE A+
Sbjct: 138 LSTVNQELETKAS 150
>gi|261253734|ref|ZP_05946307.1| transcription termination protein NusB [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|417954535|ref|ZP_12597569.1| transcription antitermination protein NusB [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260937125|gb|EEX93114.1| transcription termination protein NusB [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|342815255|gb|EGU50179.1| transcription antitermination protein NusB [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 155
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE LSAP V + R LL VV +
Sbjct: 26 ITKENVATIEEQFLSGGKYDEEEHHASEPALSAPDTDV------AYFRDLLTGVVL---S 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HTELDSKIRPYTARPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEESHKFVNGVL 145
>gi|418411932|ref|ZP_12985198.1| transcription antitermination factor NusB [Staphylococcus
epidermidis BVS058A4]
gi|410891515|gb|EKS39312.1| transcription antitermination factor NusB [Staphylococcus
epidermidis BVS058A4]
Length = 129
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 28/129 (21%)
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
T T++EA E ++ D +S L F L+ V D H ++
Sbjct: 22 TDLTIQEAIEFIKDD------------------HSDLDFDFIYWLVTGVKD----HQIVL 59
Query: 214 DKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
D+ + K W +D+ + RI IL +A EI T ++V+NEAV+L K+F D
Sbjct: 60 DETIKSHLKDWSIDRLLKSDRI----ILRMATFEILHSDTPKKVVVNEAVELTKQFSDDD 115
Query: 272 APRIINGCL 280
+ +NG L
Sbjct: 116 HYKFVNGVL 124
>gi|169350501|ref|ZP_02867439.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
gi|169292821|gb|EDS74954.1| transcription antitermination factor NusB [Clostridium spiroforme
DSM 1552]
Length = 134
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 216 VVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRI 275
V + K W +++ + +EL+IL + E+ +++INEAV+L+K++CD +
Sbjct: 68 VAKHLKKGWSLERLSK--MELAILLVGCYELLETDQSKEVIINEAVELSKKYCDDDVYKF 125
Query: 276 INGCL 280
+NG L
Sbjct: 126 VNGVL 130
>gi|365853477|ref|ZP_09393746.1| transcription antitermination factor NusB [Lactobacillus
parafarraginis F0439]
gi|363712367|gb|EHL96061.1| transcription antitermination factor NusB [Lactobacillus
parafarraginis F0439]
Length = 137
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
++ +L+ VVD D II+K + W + ++ + +L IL +A+ E+ V
Sbjct: 45 KYLDELVSGVVDHLDELDKIIEKYLRSGWSIDRIAKT-----DLIILQIALYEMLYVDDL 99
Query: 253 -HQIVINEAVDLAKRFCDGAAPRIINGCL 280
++ INEA++LAK++ D + + +NG L
Sbjct: 100 PAKVSINEAIELAKKYSDDRSRKFVNGIL 128
>gi|386859338|ref|YP_006272044.1| N utilization substance protein B-like protein [Borrelia crocidurae
str. Achema]
gi|384934219|gb|AFI30892.1| N utilization substance protein B-like protein [Borrelia crocidurae
str. Achema]
Length = 144
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 21/124 (16%)
Query: 170 EESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPI---WKVWKM 226
EE+ I+ L KL YS V V +D ++ IDK++ I W++ +M
Sbjct: 35 EENGID---LDGDLKLFYS-----------VLVNGTYD-NLESIDKLISGISLNWRLDRM 79
Query: 227 DQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
D+ IL +S+ L + V +++I+EA+ +AK++ + + + +NG L +++
Sbjct: 80 DKVDLAILRMSVYSLKFQNLDV---PKRVIIDEAILIAKKYGNKNSDKFVNGILDALLKD 136
Query: 287 LEGT 290
+E +
Sbjct: 137 MESS 140
>gi|227499084|ref|ZP_03929221.1| NusB antitermination factor [Acidaminococcus sp. D21]
gi|226904533|gb|EEH90451.1| NusB antitermination factor [Acidaminococcus sp. D21]
Length = 140
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR--HQIVINEAVDLAKR 266
H+ ID V+ + WK+ + AG ++ ++L +A E+ + I I+EAV++AK
Sbjct: 59 HLEAIDSVLDTLSDEWKVKRMAG--VDRNLLRMAAFEMYFSPQKIAPAIAISEAVEIAKI 116
Query: 267 FCDGAAPRIINGCLRTFVRN 286
+ +P ING L T VRN
Sbjct: 117 YGGDDSPHFINGLLGTLVRN 136
>gi|386759027|ref|YP_006232243.1| transcription antitermination protein NusB [Bacillus sp. JS]
gi|384932309|gb|AFI28987.1| transcription antitermination protein NusB [Bacillus sp. JS]
Length = 131
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVG 250
F +L+ V++ D +D+++ WK+D+ A IL L+ +A +E V
Sbjct: 40 FFEQLVYGVLEHQDQ----LDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVN 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
+ +NEA++LAKRF D A + +NG L ++E +
Sbjct: 96 ----VSMNEAIELAKRFGDDKATKFVNGVLSNIKSDIEQS 131
>gi|420436389|ref|ZP_14935383.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-28]
gi|393055395|gb|EJB56313.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-28]
Length = 138
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ K W + G +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIESHLKDWDFKRLGG--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|332981364|ref|YP_004462805.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
gi|332699042|gb|AEE95983.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
Length = 134
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 234 LELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++L+IL +A +E+ + H++ I+EAV+LAKR+ D +P ING L ++ L
Sbjct: 77 MDLAILRIAAAEMLYMPSVPHRVSIDEAVELAKRYGDDMSPTFINGVLAGLMKQL 131
>gi|70726392|ref|YP_253306.1| transcription antitermination protein NusB [Staphylococcus
haemolyticus JCSC1435]
gi|119390830|sp|Q4L6M5.1|NUSB_STAHJ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|68447116|dbj|BAE04700.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 128
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 28/129 (21%)
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
T T+ EA ++ DE P+L + F L+ V D H ++
Sbjct: 22 TELTINEAINFIKDDE-------------PELDFD-----FIHWLVTGVKD----HEPVL 59
Query: 214 DKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
D + P K W + R+L+ IL +A E+ T +++INEAV+LAK+F D
Sbjct: 60 DDTIKPHLKDWSL----QRLLKTDRIILRMATFELLHSDTPPKVIINEAVELAKQFSDDE 115
Query: 272 APRIINGCL 280
+ ING L
Sbjct: 116 HYKFINGVL 124
>gi|384890374|ref|YP_005764507.1| Transcription termination protein [Helicobacter pylori 908]
gi|385223049|ref|YP_005782975.1| Transcription termination protein [Helicobacter pylori 2017]
gi|385230890|ref|YP_005790809.1| Transcription termination protein [Helicobacter pylori 2018]
gi|307636683|gb|ADN79133.1| Transcription termination protein [Helicobacter pylori 908]
gi|325995267|gb|ADZ50672.1| Transcription termination protein [Helicobacter pylori 2018]
gi|325996871|gb|ADZ49079.1| Transcription termination protein [Helicobacter pylori 2017]
Length = 138
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ P K W + +E +IL L EI T
Sbjct: 43 LVFALSLFNGVLER----INEIDALIEPHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|212702193|ref|ZP_03310321.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
gi|212674398|gb|EEB34881.1| transcription antitermination factor NusB [Desulfovibrio piger ATCC
29098]
Length = 157
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
+DK + + W++D+ GR+ EL++L LAM E+ ++ INEA++L ++F +
Sbjct: 71 LDKTISRFSRNWRVDR-MGRV-ELTLLRLAMYELLYRQDVPAKVAINEALELTRQFGEDN 128
Query: 272 APRIINGCLRTFVRNLE 288
A +NG L + LE
Sbjct: 129 ATSFVNGILDAAAKALE 145
>gi|220934735|ref|YP_002513634.1| NusB antitermination factor [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996045|gb|ACL72647.1| NusB antitermination factor [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 149
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 15/105 (14%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITV-VG 250
+ R+LL+ V ++ D +D+++ P +MD+ + +E +IL LA E+ +
Sbjct: 54 YFRELLLGVTEQVDE----LDELLAP-----QMDRSVAELDPVERAILRLATFELKQRID 104
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL---EGTAN 292
+++VINEAV+L K+F A + +NG L R L E +AN
Sbjct: 105 IPYRVVINEAVELTKKFGATDAHKFVNGVLDKLGRQLRAMEASAN 149
>gi|182413526|ref|YP_001818592.1| NusB antitermination factor [Opitutus terrae PB90-1]
gi|177840740|gb|ACB74992.1| NusB antitermination factor [Opitutus terrae PB90-1]
Length = 147
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F +L+ V++ H ID + + W+ D+ A ++L+IL LA+ EI
Sbjct: 51 FGEELIHGVIE----HSDDIDARIKGLAHNWEFDRIAK--IDLTILRLAIFEILHRKDIP 104
Query: 254 QIV-INEAVDLAKRFCDGAAPRIINGCL 280
+V INEA+DL+K+F + A R ING L
Sbjct: 105 PVVSINEAIDLSKQFSNADAKRFINGIL 132
>gi|119952909|ref|YP_945118.1| transcription antitermination protein NusB [Borrelia turicatae
91E135]
gi|119861680|gb|AAX17448.1| N utilization substance protein B [Borrelia turicatae 91E135]
Length = 146
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 209 HVHIIDKVVPPI---WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAK 265
++ IDK++ I W++ +MD+ IL +S+ L + V +++I+EA+ +AK
Sbjct: 61 NLEFIDKLISDISLNWRLDRMDKVDLAILRMSVYSLKFQNLDV---PKRVIIDEAILIAK 117
Query: 266 RFCDGAAPRIINGCLRTFVRNLEGT 290
++ + + +NG L ++N+E +
Sbjct: 118 KYGSKNSYKFVNGILDALLKNMESS 142
>gi|254391339|ref|ZP_05006543.1| transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
gi|294811554|ref|ZP_06770197.1| Transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
gi|326440061|ref|ZP_08214795.1| transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
gi|197705030|gb|EDY50842.1| transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
gi|294324153|gb|EFG05796.1| Transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
Length = 142
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGA 271
ID+++ + W +D+ +++ +IL L E+ V GT +VI+EAV+LAK F
Sbjct: 63 IDELIATYAEGWDLDRMP--VVDRNILRLGTYELVWVDGTPDAVVIDEAVELAKEFSTDE 120
Query: 272 APRIINGCLRTF 283
+P +NG L F
Sbjct: 121 SPAFVNGLLGRF 132
>gi|307244294|ref|ZP_07526409.1| transcription antitermination factor NusB [Peptostreptococcus
stomatis DSM 17678]
gi|306492444|gb|EFM64482.1| transcription antitermination factor NusB [Peptostreptococcus
stomatis DSM 17678]
Length = 156
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 209 HVHIIDKVVPPIWKVWKMD-QPAGRILELSILHLAMSEITVVGTRHQIVI-NEAVDLAKR 266
++ ID + + W D PA ++++IL LA++EI + T ++V +EAV++AK+
Sbjct: 80 NIGAIDAYINEYARNWTTDTMPA---VDVAILRLAVAEIKFMFTIPEVVACDEAVNIAKK 136
Query: 267 FCDGAAPRIINGCLRTFVR 285
+CD A + ING L + ++
Sbjct: 137 YCDDDAYKYINGILGSVMK 155
>gi|289434640|ref|YP_003464512.1| transcription antitermination factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|315303024|ref|ZP_07873735.1| transcription antitermination factor NusB [Listeria ivanovii FSL
F6-596]
gi|347548744|ref|YP_004855072.1| putative transcription termination protein (NusB) [Listeria
ivanovii subsp. ivanovii PAM 55]
gi|422418960|ref|ZP_16495915.1| transcription antitermination factor NusB [Listeria seeligeri FSL
N1-067]
gi|422422020|ref|ZP_16498973.1| transcription antitermination factor NusB [Listeria seeligeri FSL
S4-171]
gi|289170884|emb|CBH27426.1| transcription antitermination factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|313628606|gb|EFR97028.1| transcription antitermination factor NusB [Listeria ivanovii FSL
F6-596]
gi|313633359|gb|EFS00202.1| transcription antitermination factor NusB [Listeria seeligeri FSL
N1-067]
gi|313638045|gb|EFS03323.1| transcription antitermination factor NusB [Listeria seeligeri FSL
S4-171]
gi|346981815|emb|CBW85788.1| Putative transcription termination protein (NusB) [Listeria
ivanovii subsp. ivanovii PAM 55]
Length = 128
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID ++ P W+MD+ + ++LS+L L++ EI + +++ +NE++++AK + D
Sbjct: 54 IDAIIEPNLDNWRMDRLSK--VDLSLLRLSVYEINYLSDVPNRVSLNESIEIAKIYSDEK 111
Query: 272 APRIINGCL 280
+ + ING L
Sbjct: 112 SSKFINGVL 120
>gi|262037941|ref|ZP_06011361.1| transcription antitermination factor NusB [Leptotrichia
goodfellowii F0264]
gi|261748019|gb|EEY35438.1| transcription antitermination factor NusB [Leptotrichia
goodfellowii F0264]
Length = 136
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
+ F + + +V+K + V I ++ W ++ LE ++L +A EIT+
Sbjct: 43 IDFLKSYVTEIVEKEEILVEEIKSILEG----WTYERLGT--LEKALLKIAFYEITIKNI 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
++I INE +++AK++ +NG L V+ GTA
Sbjct: 97 GYEIAINEVLEIAKKYSYDDTKEFLNGILAQLVKKNNGTA 136
>gi|148655139|ref|YP_001275344.1| NusB antitermination factor [Roseiflexus sp. RS-1]
gi|166215713|sp|A5URZ1.1|NUSB_ROSS1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|148567249|gb|ABQ89394.1| NusB antitermination factor [Roseiflexus sp. RS-1]
Length = 142
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV---V 249
RF R+L V W+ H +D+++ W + Q G ++ +IL +A+ E +
Sbjct: 45 RFLRRL---VFGAWE-HASYLDRIIEETAPNWPVSQMPG--VDKAILRIALFEALIDEEE 98
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
T + +INEAV+LAK++ + R +NG L T V
Sbjct: 99 KTPLKAIINEAVELAKQYGSDNSSRFVNGVLGTVV 133
>gi|312883802|ref|ZP_07743521.1| transcription antitermination protein NusB [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368551|gb|EFP96084.1| transcription antitermination protein NusB [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 155
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE + LS P V + R LL VV +
Sbjct: 26 ITKENVANIEEQFLSGDKYDEEEHHAQEPALSTPDTDV------AYFRDLLTGVVL---S 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HTELDSKIRPYTARPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEESHKFVNGVL 145
>gi|260438372|ref|ZP_05792188.1| transcription antitermination factor NusB [Butyrivibrio crossotus
DSM 2876]
gi|292808958|gb|EFF68163.1| transcription antitermination factor NusB [Butyrivibrio crossotus
DSM 2876]
Length = 142
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT-RHQIVINEAVDLAKRF 267
H+ IDKV+ + W +D+ ELSI+ +A+ EI + + I+EAV LAK++
Sbjct: 67 HIDEIDKVISEKSEGWDIDRIGKA--ELSIMRIAVYEILYDDNIENAVSISEAVKLAKKY 124
Query: 268 CDGAAPRIINGCLRTFVR 285
D A +NG L V+
Sbjct: 125 GDEKAYGFVNGVLAKIVK 142
>gi|119510389|ref|ZP_01629523.1| transcription antitermination protein NusB [Nodularia spumigena
CCY9414]
gi|119464918|gb|EAW45821.1| transcription antitermination protein NusB [Nodularia spumigena
CCY9414]
Length = 209
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+V ++ Q ++ IL +A+ E+ ++ INEAV+LAKR+ R ING L
Sbjct: 145 WQVTRLAQ-----IDRDILRIAVGEMRFFNLPDRVAINEAVELAKRYSGDEGHRFINGVL 199
Query: 281 R 281
R
Sbjct: 200 R 200
>gi|295695401|ref|YP_003588639.1| NusB antitermination factor [Kyrpidia tusciae DSM 2912]
gi|295411003|gb|ADG05495.1| NusB antitermination factor [Kyrpidia tusciae DSM 2912]
Length = 148
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTR 252
F R LL +++ +D V+ W +D+ A ++ ++L LA+ E+ V T
Sbjct: 51 FARGLLFGTLEEG----RRVDGVLRTYSTGWDLDRMAS--VDRNVLRLAVYELLHVPATP 104
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+V+NEAV+LAKR+ + R +NG L V +LE
Sbjct: 105 VSVVMNEAVELAKRYSTEESGRFVNGVLARIVAHLE 140
>gi|407473840|ref|YP_006788240.1| N utilization substance protein B-like protein [Clostridium
acidurici 9a]
gi|407050348|gb|AFS78393.1| N utilization substance protein B-like protein [Clostridium
acidurici 9a]
Length = 137
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 185 LVYSKLLLRFTRKLLV-AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAM 243
+ Y LR +L V VV +++ ID+V+ + WK+ + A ++LSIL +++
Sbjct: 30 IFYENNKLRSDERLYVDEVVKGVISNIEKIDEVIEQNSQGWKIKRIAK--VDLSILRISI 87
Query: 244 SEITVVGTR-HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
EI +Q+ INEA++++K + + + ING L F N
Sbjct: 88 FEIMFKSEIPYQVSINEAINISKEYSTNDSSKFINGLLGAFSNN 131
>gi|302380357|ref|ZP_07268827.1| transcription antitermination factor NusB [Finegoldia magna
ACS-171-V-Col3]
gi|302311847|gb|EFK93858.1| transcription antitermination factor NusB [Finegoldia magna
ACS-171-V-Col3]
Length = 137
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-G 250
+ F +++++ ++ D V+II+ K W +D+ L+LSIL + + EI V
Sbjct: 42 IEFFKEIVLNFIEHIDDIVNIIENNT----KQWNLDRINK--LDLSILQVGVCEILYVES 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
T + INEAV+LAK + + ING L + ++ E +
Sbjct: 96 TPDSVAINEAVELAKEYSTEKSYSFINGILGSVLKRKENAS 136
>gi|227530526|ref|ZP_03960575.1| transcription antitermination protein NusB [Lactobacillus vaginalis
ATCC 49540]
gi|227349532|gb|EEJ39823.1| transcription antitermination protein NusB [Lactobacillus vaginalis
ATCC 49540]
Length = 136
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV-INEAVDLAKRFCDGA 271
I +++ W++ ++ Q +L IL LA+ EI V +V INEA++LAK + +
Sbjct: 63 ITQLLASGWEINRLAQT-----DLVILRLALYEIQFVDEVPTVVAINEALELAKTYSNDK 117
Query: 272 APRIINGCLRTFVRNLE 288
+ + ING L F R LE
Sbjct: 118 SRKFINGALGKFERQLE 134
>gi|160915119|ref|ZP_02077332.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
gi|158432918|gb|EDP11207.1| transcription antitermination factor NusB [Eubacterium dolichum DSM
3991]
Length = 126
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 207 DAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKR 266
D +V ID+ + W ++ G + E +IL +A E+ IVI+EAV+LAK+
Sbjct: 55 DTYVGHIDETLRDDWTFERL----GYV-EKAILLMAACELDFETAPKAIVIDEAVNLAKK 109
Query: 267 FCDGAAPRIINGCL 280
+CD R+ING L
Sbjct: 110 YCDEDTYRLINGVL 123
>gi|352684483|ref|YP_004896468.1| NusB antitermination factor [Acidaminococcus intestini RyC-MR95]
gi|350279138|gb|AEQ22328.1| NusB antitermination factor [Acidaminococcus intestini RyC-MR95]
Length = 130
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR--HQIVINEAVDLAKR 266
H+ ID V+ + WK+ + AG ++ ++L +A E+ + I I+EAV++AK
Sbjct: 49 HLEAIDSVLDTLSDEWKVKRMAG--VDRNLLRMAAFEMYFSPQKIAPAIAISEAVEIAKI 106
Query: 267 FCDGAAPRIINGCLRTFVRN 286
+ +P ING L T VRN
Sbjct: 107 YGGDDSPHFINGLLGTLVRN 126
>gi|116872790|ref|YP_849571.1| transcription antitermination protein NusB [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|123466249|sp|A0AIG0.1|NUSB_LISW6 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|116741668|emb|CAK20792.1| N utilization substance protein B/transcription termination factor
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 128
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID ++ P W+MD+ + ++LS+L L++ EI + +++ +NE++++AK + D
Sbjct: 54 IDAIIEPNLDNWRMDRLSK--VDLSLLRLSVYEINYLDDVPNRVSLNESIEIAKIYSDEK 111
Query: 272 APRIINGCL 280
+ + ING L
Sbjct: 112 SSKFINGVL 120
>gi|315639636|ref|ZP_07894776.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
gi|315484597|gb|EFU75053.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
Length = 150
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
I+ + P WK+ ++ + IL L+I + +E +++V+NEA++L K F D +
Sbjct: 75 IESFLRPGWKIGRLAKMDVTILRLAIFEMQHAE----DVPNKVVLNEAIELTKTFSDDQS 130
Query: 273 PRIINGCLRTFVRNLEGTA 291
+ +NG L + LE
Sbjct: 131 RKFVNGVLSSINNKLEADG 149
>gi|302387570|ref|YP_003823392.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
gi|302198198|gb|ADL05769.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
Length = 147
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
WK +M + EL+IL LA+ EI ++ INEAV+LAK++ AP ING
Sbjct: 88 WKTKRMGKA-----ELTILRLALYEILFDEDVPEKVAINEAVELAKKYGGNEAPAFINGV 142
Query: 280 LRTFV 284
L V
Sbjct: 143 LAKLV 147
>gi|49483774|ref|YP_040998.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus MRSA252]
gi|282904107|ref|ZP_06311995.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C160]
gi|282905934|ref|ZP_06313789.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908844|ref|ZP_06316662.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|283958289|ref|ZP_06375740.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus A017934/97]
gi|295428103|ref|ZP_06820735.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297590931|ref|ZP_06949569.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MN8]
gi|415682326|ref|ZP_11447642.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS00]
gi|417887900|ref|ZP_12532019.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21195]
gi|418564941|ref|ZP_13129362.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21264]
gi|418582453|ref|ZP_13146531.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597134|ref|ZP_13160667.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21342]
gi|418603353|ref|ZP_13166740.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21345]
gi|418892256|ref|ZP_13446369.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418901031|ref|ZP_13455087.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909377|ref|ZP_13463373.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917422|ref|ZP_13471381.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418923207|ref|ZP_13477123.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982531|ref|ZP_13530239.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418986198|ref|ZP_13533883.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1500]
gi|56749229|sp|Q6GGH4.1|NUSB_STAAR RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|49241903|emb|CAG40597.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus MRSA252]
gi|282327108|gb|EFB57403.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331226|gb|EFB60740.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595725|gb|EFC00689.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C160]
gi|283790438|gb|EFC29255.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus A017934/97]
gi|295128461|gb|EFG58095.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297575817|gb|EFH94533.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MN8]
gi|315195426|gb|EFU25813.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS00]
gi|341856929|gb|EGS97756.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21195]
gi|371976078|gb|EHO93370.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21264]
gi|374393168|gb|EHQ64483.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21345]
gi|374395370|gb|EHQ66637.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21342]
gi|377702428|gb|EHT26750.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704242|gb|EHT28552.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377704812|gb|EHT29121.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377710863|gb|EHT35101.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377730550|gb|EHT54617.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377735166|gb|EHT59202.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750596|gb|EHT74534.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377752024|gb|EHT75948.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG149]
Length = 129
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 55 HEPVLDETISPNLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 110
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 111 FSDDDHYKFINGVL 124
>gi|296115207|ref|ZP_06833848.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
gi|295978308|gb|EFG85045.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
Length = 183
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
FT + +V + D + D V+P W + ++D P R L L A E+T
Sbjct: 76 FTAIVRGSVARQADIDAMVAD-VLPASWPMDRLD-PVLRAL----LRAAGGELTAQDPAP 129
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV 306
+++INE +D+A F G PR++NG L R + GT A+ PS +
Sbjct: 130 SRVIINEYMDVAHGFFSGDEPRMLNGVLDAMSRRIAGTEAAPATPVPGAEPSAI 183
>gi|73748962|ref|YP_308201.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
gi|147669729|ref|YP_001214547.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
gi|289432959|ref|YP_003462832.1| NusB antitermination factor [Dehalococcoides sp. GT]
gi|452203946|ref|YP_007484079.1| transcription termination protein NusB [Dehalococcoides mccartyi
DCMB5]
gi|452205445|ref|YP_007485574.1| transcription termination protein NusB [Dehalococcoides mccartyi
BTF08]
gi|119390765|sp|Q3ZYI9.1|NUSB_DEHSC RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|189035888|sp|A5FQ51.1|NUSB_DEHSB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|73660678|emb|CAI83285.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
gi|146270677|gb|ABQ17669.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
gi|288946679|gb|ADC74376.1| NusB antitermination factor [Dehalococcoides sp. GT]
gi|452111005|gb|AGG06737.1| transcription termination protein NusB [Dehalococcoides mccartyi
DCMB5]
gi|452112501|gb|AGG08232.1| transcription termination protein NusB [Dehalococcoides mccartyi
BTF08]
Length = 143
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
+ F +L AVV H ++D+ + W ++Q + ++ ++L LA+ EI
Sbjct: 44 VEFIFRLTNAVV----KHKDLLDENIRQFASAWPVEQLS--YIDRNVLRLAIFEII---- 93
Query: 252 RHQ------IVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 292
H+ + INEAV+LAK F ++ R ING L + + L TAN
Sbjct: 94 -HENDVPVKVAINEAVELAKSFGGNSSARFINGVLSSVSKALADTAN 139
>gi|37520905|ref|NP_924282.1| transcription antitermination protein NusB [Gloeobacter violaceus
PCC 7421]
gi|39931743|sp|Q7NKZ0.1|NUSB_GLOVI RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|35211900|dbj|BAC89277.1| transcription termination factor [Gloeobacter violaceus PCC 7421]
Length = 211
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
+LL A V + D ++D + W+V ++ + IL L+++ M E+ V R +
Sbjct: 118 ELLGAFVREGDNLDKLLDTCMEG-WQVERLTRIDRDILRLALVE--MVELKSVPFR--VA 172
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
I+EAV+LAK++ A R ING LR V++L+
Sbjct: 173 IDEAVELAKKYSTDTAVRFINGVLRRVVQHLQ 204
>gi|423071294|ref|ZP_17060068.1| transcription antitermination factor NusB [Streptococcus
intermedius F0413]
gi|424787099|ref|ZP_18213870.1| transcription antitermination factor NusB [Streptococcus
intermedius BA1]
gi|355363768|gb|EHG11503.1| transcription antitermination factor NusB [Streptococcus
intermedius F0413]
gi|422114350|gb|EKU18057.1| transcription antitermination factor NusB [Streptococcus
intermedius BA1]
Length = 141
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 231 GRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
GR+ +E +IL L + E+T T + +NEA++L+K+F + + + ING L F+
Sbjct: 84 GRLTLVEKNILRLGLFEMTEFDTPQLVALNEAIELSKKFSNEKSSKFINGILSKFI 139
>gi|242373824|ref|ZP_04819398.1| transcription antitermination protein NusB [Staphylococcus
epidermidis M23864:W1]
gi|242348378|gb|EES39980.1| transcription antitermination protein NusB [Staphylococcus
epidermidis M23864:W1]
Length = 128
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 187 YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQ--PAGRILELSILHLAMS 244
+ +L F L+ V D H ++D+ + P K W +++ + RI IL +A
Sbjct: 37 HPELDFDFIHWLVTGVKD----HESVLDEKIKPHLKDWSIERLLKSDRI----ILRMATF 88
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
E+ T +++INEAV+L K+F D + ING L
Sbjct: 89 EMLHSDTPEKVIINEAVELTKQFSDDDHYKFINGVL 124
>gi|169824540|ref|YP_001692151.1| transcription terminator [Finegoldia magna ATCC 29328]
gi|297588522|ref|ZP_06947165.1| transcription antitermination factor NusB [Finegoldia magna ATCC
53516]
gi|303233660|ref|ZP_07320314.1| transcription antitermination factor NusB [Finegoldia magna
BVS033A4]
gi|238687751|sp|B0S1M1.1|NUSB_FINM2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|167831345|dbj|BAG08261.1| transcription terminator [Finegoldia magna ATCC 29328]
gi|297573895|gb|EFH92616.1| transcription antitermination factor NusB [Finegoldia magna ATCC
53516]
gi|302495094|gb|EFL54846.1| transcription antitermination factor NusB [Finegoldia magna
BVS033A4]
Length = 137
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-G 250
+ F +++++ ++ D V+II+ K W +D+ L+LSIL + + EI V
Sbjct: 42 IEFFKEIVLNFIEHIDDIVNIIENNT----KQWNLDRINK--LDLSILQVGVCEILYVES 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
T + INEAV+LAK + + ING L + ++ E +
Sbjct: 96 TPDSVAINEAVELAKEYSTEKSYSFINGILGSVLKRKENAS 136
>gi|349687062|ref|ZP_08898204.1| histone-like DNA-binding protein HU [Gluconacetobacter oboediens
174Bp2]
Length = 193
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 204 DKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVD 262
D+ DA +H ++P W + ++D P R +I+H A E+T +++INE +D
Sbjct: 83 DRIDALLH---DILPASWPLARLD-PVLR----AIMHAAGGEMTGADPVPARVIINEYMD 134
Query: 263 LAKRFCDGAAPRIINGCLRTFVRNL 287
+A F G PR++NG L R +
Sbjct: 135 IAHGFLAGDEPRMLNGVLDALSRRI 159
>gi|73662539|ref|YP_301320.1| transcription antitermination protein NusB [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|119390831|sp|Q49XW9.1|NUSB_STAS1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|72495054|dbj|BAE18375.1| putative antitermination protein [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 128
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 190 LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEIT 247
L F L+ V D H ++D+ + P K W + R+L+ IL ++ E+
Sbjct: 40 LEFEFISWLVTGVKD----HEVVLDEKIQPHLKDWTL----ARLLKSDRIILRMSTFEML 91
Query: 248 VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
T +++INEAV+LAK+F D + ING L
Sbjct: 92 HSSTPQKVIINEAVELAKQFSDDDHYKFINGVL 124
>gi|315637897|ref|ZP_07893084.1| transcription antitermination factor NusB [Campylobacter
upsaliensis JV21]
gi|315482009|gb|EFU72626.1| transcription antitermination factor NusB [Campylobacter
upsaliensis JV21]
Length = 132
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
FT L V++ H+ +D+ + K+ Q G I E +IL L E+ T
Sbjct: 44 FTLSLYNGVLE----HLQSLDERIDVFLNENKIHQ-IGHI-ERAILRLGAFELLHTDTLA 97
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
IVINEAV+LAK + AP++ING L
Sbjct: 98 AIVINEAVELAKEMANENAPKLINGVL 124
>gi|406997818|gb|EKE15835.1| N utilization substance protein B [uncultured bacterium]
Length = 164
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 212 IIDKVVP--PIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 269
II+K P P+ +V +D+ IL L I L + V + + INEA++LAK F
Sbjct: 66 IIEKCAPEWPLEQVTAVDR---NILRLGIFELMYGDYNEVPPK--VAINEAIELAKTFGG 120
Query: 270 GAAPRIINGCLRTFVRNLEGTANIEASKASKE 301
++ R +NG L T R L ++S+ KE
Sbjct: 121 ESSARFVNGVLGTIYRELGEPLKDDSSRKHKE 152
>gi|32473208|ref|NP_866202.1| transcription antitermination protein NusB [Rhodopirellula baltica
SH 1]
gi|417303279|ref|ZP_12090338.1| transcription antitermination protein NusB [Rhodopirellula baltica
WH47]
gi|421609986|ref|ZP_16051170.1| transcription antitermination protein NusB [Rhodopirellula baltica
SH28]
gi|440712754|ref|ZP_20893368.1| transcription antitermination protein NusB [Rhodopirellula baltica
SWK14]
gi|449138164|ref|ZP_21773460.1| transcription antitermination protein NusB [Rhodopirellula europaea
6C]
gi|39931772|sp|Q7USA9.1|NUSB_RHOBA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|32397887|emb|CAD73888.1| probable N utilization substance protein B homolog [Rhodopirellula
baltica SH 1]
gi|327540459|gb|EGF27044.1| transcription antitermination protein NusB [Rhodopirellula baltica
WH47]
gi|408499044|gb|EKK03519.1| transcription antitermination protein NusB [Rhodopirellula baltica
SH28]
gi|436442593|gb|ELP35715.1| transcription antitermination protein NusB [Rhodopirellula baltica
SWK14]
gi|448883325|gb|EMB13862.1| transcription antitermination protein NusB [Rhodopirellula europaea
6C]
Length = 145
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 184 KLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAM 243
+L K+L F +LL + + D ID + + W + + + + ++L L
Sbjct: 40 RLQGRKVLTDFAAELLDGTMARRDD----IDAKLTKLSTNWALHRMP--VTDRNVLRLGA 93
Query: 244 SEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
EI GT Q+ I+EA+ LAKR+ +PR ING L
Sbjct: 94 YEILYSGTPGQVAISEALTLAKRYGGENSPRFINGVL 130
>gi|418994251|ref|ZP_13541886.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG290]
gi|377744048|gb|EHT68026.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIG290]
Length = 111
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 37 HEPVLDETISPYLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 92
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 93 FSDDDHYKFINGVL 106
>gi|419697594|ref|ZP_14225326.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23211]
gi|380678004|gb|EIB92863.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23211]
Length = 132
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
FT L ++D + IDK + ++ G + E +IL L E+ T
Sbjct: 43 NFTLNLYHGILDNLNN----IDKTLNSFLNDNQI-TALGHV-ERAILRLGAYELLFTDTP 96
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
IVINEA++LAK + +P+ ING L ++
Sbjct: 97 SAIVINEAIELAKELANDNSPKFINGVLDALIK 129
>gi|257885163|ref|ZP_05664816.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
gi|257821015|gb|EEV48149.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
Length = 149
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-VVGTR 252
+ L+ V K D +I+K + W + ++ + ++L+IL +A+ E+T V
Sbjct: 56 YLDTLVGGVCAKKDELDKVIEKHLKNNWHINRISK-----MDLAILRIAIFEMTYVTDVP 110
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+ +NEA++LAK F D + + +NG L ++ LE A
Sbjct: 111 AAVALNEAIELAKTFSDDRSRKFVNGVLSNVLKELEAGA 149
>gi|220904887|ref|YP_002480199.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254772632|sp|B8J194.1|NUSB_DESDA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|219869186|gb|ACL49521.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 164
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
+D+ + W++D+ GR+ EL++L LA E+ ++ INEA++L+++F +G
Sbjct: 75 LDETISRFSHNWRVDR-MGRV-ELTLLRLAAYELVFRADVPPKVAINEALELSRQFGEGN 132
Query: 272 APRIINGCLRTFVRNLE 288
A ING L + LE
Sbjct: 133 AKNFINGILDAVAKALE 149
>gi|384173131|ref|YP_005554508.1| transcription antitermination protein NusB [Arcobacter sp. L]
gi|345472741|dbj|BAK74191.1| transcription antitermination protein NusB [Arcobacter sp. L]
Length = 131
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E SIL LA+ EI +VINEA++L+K+ AP+ +NG L V+
Sbjct: 79 VEKSILRLAIYEILFEDLPKAVVINEAIELSKKLASDGAPKFVNGLLDKVVK 130
>gi|295108281|emb|CBL22234.1| transcription antitermination factor NusB [Ruminococcus obeum
A2-162]
Length = 171
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 182 PPKL-VYSKLLLRFTRKLLVAVVDKWD---AHVHIIDKVVPPI---WKVWKMDQPAGRIL 234
P +L +Y + L + K A+ K+D H+ ID+++ WK +M++ L
Sbjct: 26 PEQLSIYFEGLGEVSEKDQEAIQQKYDHILEHLEEIDEILNDYSRGWKTTRMNRVDLTAL 85
Query: 235 ELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
L++ + M E VG + INEAV+LAK F + +NG L
Sbjct: 86 RLAVYEMKMDEDVPVG----VAINEAVELAKLFGGEDSGSFVNGVL 127
>gi|218961705|ref|YP_001741480.1| N utilization substance protein B [Candidatus Cloacamonas
acidaminovorans]
gi|167730362|emb|CAO81274.1| N utilization substance protein B [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 153
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W+++ A +L+ SIL LA E+ T +VINEA+++AK+F A+ + ING L
Sbjct: 84 WELEDIA--LLDRSILCLAAYELLFTDTPAPVVINEAIEIAKKFSSEASGKFINGIL 138
>gi|440781954|ref|ZP_20960182.1| transcription antitermination protein NusB [Clostridium
pasteurianum DSM 525]
gi|440220672|gb|ELP59879.1| transcription antitermination protein NusB [Clostridium
pasteurianum DSM 525]
Length = 140
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
WK+ ++ + IL+++I + E ++ NEAV+LAK++ D +P ING +
Sbjct: 71 WKINRISKINTAILKIAIYEIYFEE----DIPEKVSANEAVNLAKKYSDEKSPAFINGVI 126
Query: 281 RTFVRNLEGTANIE 294
+++ + T N++
Sbjct: 127 GNIIKSKQSTKNMD 140
>gi|410722790|ref|ZP_11362043.1| transcription antitermination factor NusB [Clostridium sp.
Maddingley MBC34-26]
gi|410603786|gb|EKQ58212.1| transcription antitermination factor NusB [Clostridium sp.
Maddingley MBC34-26]
Length = 133
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 21/138 (15%)
Query: 150 GPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAH 209
G ++ +T+EEA E + EE+ + + L + ++ L+ V + H
Sbjct: 16 GITLSKDTIEEAVESFIENYEENIKDID--------------LTYVKQALIGVQN----H 57
Query: 210 VHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFC 268
IDK++ WK+D+ + + LSIL LA E+ + + INEA+++A+R+
Sbjct: 58 KAEIDKMIEANLHNWKIDRISK--VNLSILRLATYELLYDESVPRSVAINEALEIARRYS 115
Query: 269 DGAAPRIINGCLRTFVRN 286
D + ING L N
Sbjct: 116 DEKSVAFINGVLDKIKEN 133
>gi|156973480|ref|YP_001444387.1| transcription antitermination protein NusB [Vibrio harveyi ATCC
BAA-1116]
gi|269962347|ref|ZP_06176697.1| N utilization substance protein B [Vibrio harveyi 1DA3]
gi|166215728|sp|A7MWU1.1|NUSB_VIBHB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|156525074|gb|ABU70160.1| hypothetical protein VIBHAR_01170 [Vibrio harveyi ATCC BAA-1116]
gi|269832843|gb|EEZ86952.1| N utilization substance protein B [Vibrio harveyi 1DA3]
Length = 155
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 15/126 (11%)
Query: 157 TVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKV 216
T+EE + L D+ + E E+ ++ P L + + + R+LL VV +H + K+
Sbjct: 33 TIEE--QFLSGDKYD---EEELHASEPALAAPETDVAYFRELLSGVVL---SHSELDSKI 84
Query: 217 VPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPR 274
P + + + +D ++EL++L LAM E+T +++VINEA++LAK F + +
Sbjct: 85 RPYVSRPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHK 139
Query: 275 IINGCL 280
+NG L
Sbjct: 140 FVNGVL 145
>gi|350530426|ref|ZP_08909367.1| transcription antitermination protein NusB [Vibrio rotiferianus
DAT722]
gi|388601541|ref|ZP_10159937.1| transcription antitermination protein NusB [Vibrio campbellii
DS40M4]
gi|424032232|ref|ZP_17771652.1| transcription antitermination factor NusB [Vibrio cholerae HENC-01]
gi|424042784|ref|ZP_17780458.1| transcription antitermination factor NusB [Vibrio cholerae HENC-02]
gi|424045137|ref|ZP_17782703.1| transcription antitermination factor NusB [Vibrio cholerae HENC-03]
gi|444425615|ref|ZP_21221051.1| transcription antitermination protein NusB [Vibrio campbellii CAIM
519 = NBRC 15631]
gi|408876237|gb|EKM15366.1| transcription antitermination factor NusB [Vibrio cholerae HENC-01]
gi|408886791|gb|EKM25445.1| transcription antitermination factor NusB [Vibrio cholerae HENC-03]
gi|408887203|gb|EKM25828.1| transcription antitermination factor NusB [Vibrio cholerae HENC-02]
gi|444241088|gb|ELU52617.1| transcription antitermination protein NusB [Vibrio campbellii CAIM
519 = NBRC 15631]
Length = 151
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 15/126 (11%)
Query: 157 TVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKV 216
T+EE + L D+ + E E+ ++ P L + + + R+LL VV +H + K+
Sbjct: 29 TIEE--QFLSGDKYD---EEELHASEPALAAPETDVAYFRELLSGVVL---SHSELDSKI 80
Query: 217 VPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPR 274
P + + + +D ++EL++L LAM E+T +++VINEA++LAK F + +
Sbjct: 81 RPYVSRPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHK 135
Query: 275 IINGCL 280
+NG L
Sbjct: 136 FVNGVL 141
>gi|339443491|ref|YP_004709496.1| hypothetical protein CXIVA_24270 [Clostridium sp. SY8519]
gi|338902892|dbj|BAK48394.1| hypothetical protein CXIVA_24270 [Clostridium sp. SY8519]
Length = 136
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 209 HVHIIDKVVPPIWKVWKMDQP---------AGRI--LELSILHLAMSEITVVGT-RHQIV 256
+ +I DKV+ + +DQ RI EL+IL LA+ EI + I
Sbjct: 49 YQYIHDKVLDILHSCQSIDQKINESADKWKTSRIGKAELTILRLAVYEIFQEDSISTAIA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCL 280
INEAV+LAK++ D AP+ +NG L
Sbjct: 109 INEAVELAKKYGDDNAPKFVNGLL 132
>gi|357237633|ref|ZP_09124974.1| transcription antitermination factor NusB [Streptococcus ictaluri
707-05]
gi|356753823|gb|EHI70926.1| transcription antitermination factor NusB [Streptococcus ictaluri
707-05]
Length = 152
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVG-TRHQI 255
L+ +V+ AH +D+++ KV W +D+ + + ++L L + EI T ++
Sbjct: 55 FLLNLVNGVIAHQTELDELITNNLKVGWTLDRLT--VSDKTMLRLGLFEIKYFNETPDRV 112
Query: 256 VINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NE +++AK++ D + + ING L FV
Sbjct: 113 ALNEIIEIAKKYSDDRSAKFINGLLSQFV 141
>gi|157692931|ref|YP_001487393.1| transcription antitermination protein NusB [Bacillus pumilus
SAFR-032]
gi|166918803|sp|A8FF16.1|NUSB_BACP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|157681689|gb|ABV62833.1| transcription antitermination protein NusB [Bacillus pumilus
SAFR-032]
Length = 131
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVG 250
F +L+ V+++ D +D ++ WK+D+ A IL LS+ + E V
Sbjct: 40 FFEELVFGVLEQKDK----LDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVS 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ +NEA++LAK F D AP+ +NG L +L+
Sbjct: 96 ----VSMNEAIELAKLFGDDKAPKFVNGVLSNIKNDLK 129
>gi|308174227|ref|YP_003920932.1| transcription termination factor NusB [Bacillus amyloliquefaciens
DSM 7]
gi|375362968|ref|YP_005131007.1| nusB-like N utilization substance protein B [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|384160084|ref|YP_005542157.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens TA208]
gi|384165009|ref|YP_005546388.1| transcription termination factor NusB [Bacillus amyloliquefaciens
LL3]
gi|384169148|ref|YP_005550526.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens XH7]
gi|421731046|ref|ZP_16170172.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451346358|ref|YP_007444989.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens IT-45]
gi|307607091|emb|CBI43462.1| transcription termination factor NusB [Bacillus amyloliquefaciens
DSM 7]
gi|328554172|gb|AEB24664.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens TA208]
gi|328912564|gb|AEB64160.1| transcription termination factor NusB [Bacillus amyloliquefaciens
LL3]
gi|341828427|gb|AEK89678.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens XH7]
gi|371568962|emb|CCF05812.1| nusB-like N utilization substance protein B [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407075200|gb|EKE48187.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449850116|gb|AGF27108.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens IT-45]
Length = 130
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
F +L+ V++ H +D+++ WK+D+ A ++ +IL LA+ E+
Sbjct: 40 FFEQLVYGVIE----HQVQLDEMISGHLVNWKLDRIAN--VDRAILRLAVYEMVYTDDIP 93
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ +NEA++LAKRF D A + +NG L ++E
Sbjct: 94 ANVSLNEAIELAKRFGDDKAAKFVNGVLSNIKTDIE 129
>gi|260893142|ref|YP_003239239.1| NusB antitermination factor [Ammonifex degensii KC4]
gi|260865283|gb|ACX52389.1| NusB antitermination factor [Ammonifex degensii KC4]
Length = 155
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQI----VINEAVDLAKRFC 268
ID+V+ + + W++++ R+ + +++ LA+ E+ R I INEAV+LAKR+
Sbjct: 59 IDRVIEELSQRWRLER-MNRV-DRNVMRLALYELLF---RQDIPPAVAINEAVELAKRYG 113
Query: 269 DGAAPRIINGCLRTFVRNL 287
+PR +NG L NL
Sbjct: 114 GEESPRFVNGILGKVAENL 132
>gi|257063533|ref|YP_003143205.1| transcription antitermination factor NusB [Slackia
heliotrinireducens DSM 20476]
gi|256791186|gb|ACV21856.1| transcription antitermination factor NusB [Slackia
heliotrinireducens DSM 20476]
Length = 183
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 24/126 (19%)
Query: 175 EAEVLSAPPKLVYSK-------LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMD 227
E+++L P V + L + R+LL+ V +H+ ID+ + K W +D
Sbjct: 20 ESDILGTPVDKVVDEGVVPEEAALNDYARRLLLGVA----SHITDIDRQISKSSKNWAID 75
Query: 228 QPAGRILELSILHLAMSEITVVGTRH------QIVINEAVDLAKRFCDGAAPRIINGCLR 281
+ + ++ A+ ITV +H + INEAV+LAK F R +NG L
Sbjct: 76 R-------MPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTYRFVNGILG 128
Query: 282 TFVRNL 287
R +
Sbjct: 129 RIARTM 134
>gi|417926342|ref|ZP_12569742.1| transcription antitermination factor NusB [Finegoldia magna
SY403409CC001050417]
gi|341589428|gb|EGS32707.1| transcription antitermination factor NusB [Finegoldia magna
SY403409CC001050417]
Length = 137
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVV 249
+ F +++++ ++ D V+II+ K W + GRI L+LSIL + + EI V
Sbjct: 42 IEFFKEIVLNFIEHIDDIVNIIENNT----KQWNL----GRINKLDLSILQVGVCEILYV 93
Query: 250 -GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
T + INEAV+LAK + + ING L + ++ E +
Sbjct: 94 ESTPDSVAINEAVELAKEYSTEKSYSFINGILGSVLKRKENAS 136
>gi|16803399|ref|NP_464884.1| transcription antitermination protein NusB [Listeria monocytogenes
EGD-e]
gi|46907585|ref|YP_013974.1| transcription antitermination protein NusB [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093746|ref|ZP_00231496.1| N utilization substance protein B [Listeria monocytogenes str. 4b
H7858]
gi|47095942|ref|ZP_00233545.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
F6854]
gi|226223960|ref|YP_002758067.1| transcription termination protein (NusB) [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|254824582|ref|ZP_05229583.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J1-194]
gi|254827620|ref|ZP_05232307.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL N3-165]
gi|254852593|ref|ZP_05241941.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL R2-503]
gi|254912033|ref|ZP_05262045.1| transcription antitermination protein NusB [Listeria monocytogenes
J2818]
gi|254932326|ref|ZP_05265685.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
gi|254936360|ref|ZP_05268057.1| transcription antitermination protein NusB [Listeria monocytogenes
F6900]
gi|254994167|ref|ZP_05276357.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J2-064]
gi|255018100|ref|ZP_05290226.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL F2-515]
gi|255029814|ref|ZP_05301765.1| transcription antitermination protein NusB [Listeria monocytogenes
LO28]
gi|255520789|ref|ZP_05388026.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J1-175]
gi|284801744|ref|YP_003413609.1| transcription antitermination protein NusB [Listeria monocytogenes
08-5578]
gi|284994886|ref|YP_003416654.1| transcription antitermination protein NusB [Listeria monocytogenes
08-5923]
gi|300765401|ref|ZP_07075383.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
gi|386047011|ref|YP_005965343.1| transcription antitermination factor NusB [Listeria monocytogenes
J0161]
gi|386050335|ref|YP_005968326.1| N utilization substance protein B [Listeria monocytogenes FSL
R2-561]
gi|386053612|ref|YP_005971170.1| transcription antitermination factor NusB [Listeria monocytogenes
Finland 1998]
gi|386732097|ref|YP_006205593.1| transcription antitermination protein NusB [Listeria monocytogenes
07PF0776]
gi|404280913|ref|YP_006681811.1| transcription antitermination factor [Listeria monocytogenes
SLCC2755]
gi|404283850|ref|YP_006684747.1| transcription antitermination factor [Listeria monocytogenes
SLCC2372]
gi|404286778|ref|YP_006693364.1| transcription antitermination factor [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405749701|ref|YP_006673167.1| transcription antitermination factor [Listeria monocytogenes ATCC
19117]
gi|405752576|ref|YP_006676041.1| transcription antitermination factor [Listeria monocytogenes
SLCC2378]
gi|405755488|ref|YP_006678952.1| transcription antitermination factor [Listeria monocytogenes
SLCC2540]
gi|405758406|ref|YP_006687682.1| transcription antitermination factor [Listeria monocytogenes
SLCC2479]
gi|406704130|ref|YP_006754484.1| transcription antitermination factor [Listeria monocytogenes L312]
gi|417314620|ref|ZP_12101316.1| transcription antitermination protein NusB [Listeria monocytogenes
J1816]
gi|417317503|ref|ZP_12104120.1| transcription antitermination protein NusB [Listeria monocytogenes
J1-220]
gi|424714233|ref|YP_007014948.1| N utilization substance protein B homolog [Listeria monocytogenes
serotype 4b str. LL195]
gi|424823120|ref|ZP_18248133.1| N pathway substance protein [Listeria monocytogenes str. Scott A]
gi|22095949|sp|Q8Y7C6.1|NUSB_LISMO RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|67460884|sp|Q71ZW3.1|NUSB_LISMF RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|259514854|sp|C1L2R5.1|NUSB_LISMC RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|16410775|emb|CAC99437.1| lmo1359 [Listeria monocytogenes EGD-e]
gi|46880853|gb|AAT04151.1| N utilization substance protein B [Listeria monocytogenes serotype
4b str. F2365]
gi|47015688|gb|EAL06618.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
F6854]
gi|47017867|gb|EAL08650.1| N utilization substance protein B [Listeria monocytogenes str. 4b
H7858]
gi|225876422|emb|CAS05131.1| Putative transcription termination protein (NusB) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258599998|gb|EEW13323.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL N3-165]
gi|258605906|gb|EEW18514.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL R2-503]
gi|258608951|gb|EEW21559.1| transcription antitermination protein NusB [Listeria monocytogenes
F6900]
gi|284057306|gb|ADB68247.1| transcription antitermination protein NusB [Listeria monocytogenes
08-5578]
gi|284060353|gb|ADB71292.1| transcription antitermination protein NusB [Listeria monocytogenes
08-5923]
gi|293583882|gb|EFF95914.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
gi|293589999|gb|EFF98333.1| transcription antitermination protein NusB [Listeria monocytogenes
J2818]
gi|293593820|gb|EFG01581.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J1-194]
gi|300513838|gb|EFK40903.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
gi|328467497|gb|EGF38566.1| transcription antitermination protein NusB [Listeria monocytogenes
J1816]
gi|328475073|gb|EGF45861.1| transcription antitermination protein NusB [Listeria monocytogenes
J1-220]
gi|332311800|gb|EGJ24895.1| N pathway substance protein [Listeria monocytogenes str. Scott A]
gi|345534002|gb|AEO03443.1| transcription antitermination factor NusB [Listeria monocytogenes
J0161]
gi|346424181|gb|AEO25706.1| N utilization substance protein B [Listeria monocytogenes FSL
R2-561]
gi|346646263|gb|AEO38888.1| transcription antitermination factor NusB [Listeria monocytogenes
Finland 1998]
gi|384390855|gb|AFH79925.1| transcription antitermination protein NusB [Listeria monocytogenes
07PF0776]
gi|404218901|emb|CBY70265.1| transcription antitermination factor [Listeria monocytogenes ATCC
19117]
gi|404221776|emb|CBY73139.1| transcription antitermination factor [Listeria monocytogenes
SLCC2378]
gi|404224688|emb|CBY76050.1| transcription antitermination factor [Listeria monocytogenes
SLCC2540]
gi|404227548|emb|CBY48953.1| transcription antitermination factor [Listeria monocytogenes
SLCC2755]
gi|404233352|emb|CBY54755.1| transcription antitermination factor [Listeria monocytogenes
SLCC2372]
gi|404236288|emb|CBY57690.1| transcription antitermination factor [Listeria monocytogenes
SLCC2479]
gi|404245707|emb|CBY03932.1| transcription antitermination factor [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406361160|emb|CBY67433.1| transcription antitermination factor [Listeria monocytogenes L312]
gi|424013417|emb|CCO63957.1| N utilization substance protein B homolog [Listeria monocytogenes
serotype 4b str. LL195]
gi|441471032|emb|CCQ20787.1| N utilization substance protein B homolog [Listeria monocytogenes]
gi|441474159|emb|CCQ23913.1| N utilization substance protein B homolog [Listeria monocytogenes
N53-1]
Length = 128
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID ++ P W+MD+ + ++LS+L L++ EI + +++ +NE++++AK + D
Sbjct: 54 IDAIIEPNLDNWRMDRLSK--VDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAKIYSDEK 111
Query: 272 APRIINGCL 280
+ + ING L
Sbjct: 112 SSKFINGVL 120
>gi|406837265|ref|ZP_11096859.1| transcription antitermination protein NusB [Lactobacillus vini DSM
20605]
Length = 135
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 197 KLLVAVVDKWDAHVH-IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQ 254
KLL+A V K ++ +I + + W + ++++ +L I+ +A+ EI + T +
Sbjct: 48 KLLIAGVQKNLLEINQVITEFLKQNWSLERLNKA-----DLVIMQIAVFEIKFITETPDK 102
Query: 255 IVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ +NEA++LAK F D + R ING L +
Sbjct: 103 VAVNEALELAKEFSDEKSRRFINGILSNLI 132
>gi|389571713|ref|ZP_10161802.1| transcription antitermination protein NusB [Bacillus sp. M 2-6]
gi|388428607|gb|EIL86403.1| transcription antitermination protein NusB [Bacillus sp. M 2-6]
Length = 130
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVG 250
F +L+ V+++ D +D ++ WK+D+ A IL LS+ + E V
Sbjct: 40 FFEELVFGVLEQKDK----LDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVS 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ +NEA++LAK F D AP+ +NG L +L+
Sbjct: 96 ----VSMNEAIELAKLFGDDKAPKFVNGVLSNIKNDLK 129
>gi|166030414|ref|ZP_02233243.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
27755]
gi|166029772|gb|EDR48529.1| transcription antitermination factor NusB [Dorea formicigenerans
ATCC 27755]
Length = 132
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
WK +M++ IL L++ + E VG + INEAV+LAK++ P ING L
Sbjct: 73 WKTSRMNKVDLSILRLAVYEMKYDEDVPVG----VAINEAVELAKKYSGDEGPAFINGVL 128
>gi|452974993|gb|EME74812.1| transcription antitermination protein NusB [Bacillus sonorensis
L12]
Length = 129
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 269
ID+++ WK+D+ A IL LS+ +A S V + +NEA++LAK+F D
Sbjct: 55 IDEMITRHLVNWKLDRLANVDRAILRLSVYEMAFSHDIPVN----VSMNEAIELAKQFGD 110
Query: 270 GAAPRIINGCLRTFVRNLE 288
+ + +NG L +LE
Sbjct: 111 DKSAKFVNGVLSNIKSDLE 129
>gi|339625303|ref|ZP_08661092.1| NusB antitermination factor [Fructobacillus fructosus KCTC 3544]
Length = 137
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDGAAPRIINGCLRT 282
WK+D+ A L L IL +A E+T+ T +++V++EAV+LAK + + ING L+
Sbjct: 73 WKLDRIAR--LNLVILRMASYELTLPEPTPYKVVVDEAVELAKEYATVEDAQFINGVLKN 130
Query: 283 FVRNLEGTANIE 294
F AN+E
Sbjct: 131 F-----APANVE 137
>gi|386748727|ref|YP_006221934.1| transcription antitermination protein NusB [Helicobacter cetorum
MIT 00-7128]
gi|384554970|gb|AFI03304.1| transcription antitermination protein NusB [Helicobacter cetorum
MIT 00-7128]
Length = 136
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K + ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----IAEIDTLIEPHLKDWDFKRLGS--MEKAILRLGAYEICFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+ IVINE ++L K + + P+ +N L + +
Sbjct: 97 ENPIVINECIELGKLYAEPNTPKFLNAILDSLSK 130
>gi|260775291|ref|ZP_05884188.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608472|gb|EEX34637.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 155
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE +A P LV + + R LL VV +
Sbjct: 26 ITKENVATIEEQFLSGGKYDEEEHH------AAEPALVAPDTDVAYFRDLLTGVVL---S 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HTELDSKIRPYTARPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEESHKFVNGVL 145
>gi|346306463|ref|ZP_08848619.1| transcription antitermination factor NusB [Dorea formicigenerans
4_6_53AFAA]
gi|345897837|gb|EGX67734.1| transcription antitermination factor NusB [Dorea formicigenerans
4_6_53AFAA]
Length = 132
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
WK +M++ IL L++ + E VG + INEAV+LAK++ P ING L
Sbjct: 73 WKTSRMNKVDLSILRLAVYEMKYDEDVPVG----VAINEAVELAKKYSGDEGPAFINGVL 128
>gi|406957758|gb|EKD85623.1| N utilization substance protein B-like protein [uncultured
bacterium]
Length = 121
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 219 PIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH-QIVINEAVDLAKRFCDGAAPRIIN 277
P+ K+ K+D L+IL LA+ E+ V +++++EA++LAK + ++P IN
Sbjct: 55 PVDKINKVD--------LAILRLAVYELLVSKKEPPKVIVDEAIELAKEYGGESSPAFIN 106
Query: 278 GCLRTFVRNLEGTAN 292
G L + N E T N
Sbjct: 107 GALGKVINNDETTKN 121
>gi|418898159|ref|ZP_13452229.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|377761194|gb|EHT85070.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 122
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H ++D+ + P K W + R+L+ IL +A EI T ++V+NEAV+L K+
Sbjct: 48 HEPVLDETISPNLKDWTI----ARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQ 103
Query: 267 FCDGAAPRIINGCL 280
F D + ING L
Sbjct: 104 FSDDDHYKFINGVL 117
>gi|221310355|ref|ZP_03592202.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. 168]
gi|221314679|ref|ZP_03596484.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221319602|ref|ZP_03600896.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221323878|ref|ZP_03605172.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. SMY]
gi|255767541|ref|NP_390312.2| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. 168]
gi|321311916|ref|YP_004204203.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
gi|384176053|ref|YP_005557438.1| transcription antitermination factor NusB [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|402776694|ref|YP_006630638.1| transcription termination protein NusB [Bacillus subtilis QB928]
gi|418032395|ref|ZP_12670878.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|428279917|ref|YP_005561652.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. natto BEST195]
gi|430759102|ref|YP_007209026.1| N utilization substance protein B protein NusB [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|449094929|ref|YP_007427420.1| transcription antitermination protein [Bacillus subtilis XF-1]
gi|452915846|ref|ZP_21964472.1| transcription antitermination factor NusB [Bacillus subtilis
MB73/2]
gi|251757301|sp|P54520.2|NUSB_BACSU RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|225185169|emb|CAB14363.2| transcription termination factor NusB [Bacillus subtilis subsp.
subtilis str. 168]
gi|291484874|dbj|BAI85949.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. natto BEST195]
gi|320018190|gb|ADV93176.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
gi|349595277|gb|AEP91464.1| transcription antitermination factor NusB [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|351471258|gb|EHA31379.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|402481874|gb|AFQ58383.1| Transcription termination factor NusB [Bacillus subtilis QB928]
gi|407959677|dbj|BAM52917.1| transcription antitermination protein NusB [Bacillus subtilis
BEST7613]
gi|407965252|dbj|BAM58491.1| transcription antitermination protein NusB [Bacillus subtilis
BEST7003]
gi|430023622|gb|AGA24228.1| N utilization substance protein B protein NusB [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|449028844|gb|AGE64083.1| transcription antitermination protein [Bacillus subtilis XF-1]
gi|452116194|gb|EME06590.1| transcription antitermination factor NusB [Bacillus subtilis
MB73/2]
Length = 131
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVG 250
F +L+ V++ D +D+++ WK+D+ A IL L+ +A +E V
Sbjct: 40 FFEQLVHGVLEHQDQ----LDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVN 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
+ +NEA++LAKRF D A + +NG L ++E +
Sbjct: 96 ----VSMNEAIELAKRFGDDKATKFVNGVLSNIKSDIEQS 131
>gi|386747037|ref|YP_006220245.1| transcription antitermination protein NusB [Helicobacter cetorum
MIT 99-5656]
gi|384553279|gb|AFI05035.1| transcription antitermination protein NusB [Helicobacter cetorum
MIT 99-5656]
Length = 136
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V++K + ID ++ P K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLEK----IAEIDTLIEPHLKDWDFKRLGS--MEKAILRLGAYEICFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+ IVINE ++L K + + P+ +N L + +
Sbjct: 97 ENPIVINECIELGKLYAEPNTPKFLNAILDSLSK 130
>gi|290968307|ref|ZP_06559849.1| transcription antitermination factor NusB [Megasphaera genomosp.
type_1 str. 28L]
gi|335049344|ref|ZP_08542343.1| transcription antitermination factor NusB [Megasphaera sp. UPII
199-6]
gi|290781666|gb|EFD94252.1| transcription antitermination factor NusB [Megasphaera genomosp.
type_1 str. 28L]
gi|333763481|gb|EGL40930.1| transcription antitermination factor NusB [Megasphaera sp. UPII
199-6]
Length = 141
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV----VGTRHQIVINEAVDLAKRFC 268
+D+++ + K W + + E +I+ LA+ E+ V T +V+NEAV LAK +C
Sbjct: 65 LDRIIGSLAKDWDIQRL--NYTEKNIMRLALCEMKYPKEPVPT--AVVLNEAVLLAKEYC 120
Query: 269 DGAAPRIINGCLRTFVR 285
A R +NG L T+ R
Sbjct: 121 SSEAARFVNGVLGTYSR 137
>gi|318042975|ref|ZP_07974931.1| transcription antitermination protein NusB [Synechococcus sp.
CB0101]
Length = 205
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
+D+ + + + W++ + P ++ IL LA +I T + NEAV+LA R+ D
Sbjct: 133 LDQRLDAVMEGWRLTRLPR---IDRDILRLAAVDIEQFNTPAAVACNEAVELANRYSDEQ 189
Query: 272 APRIINGCLRTFV 284
R+ING LR F
Sbjct: 190 GRRMINGVLRRFT 202
>gi|313884728|ref|ZP_07818484.1| transcription antitermination factor NusB [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620096|gb|EFR31529.1| transcription antitermination factor NusB [Eremococcus coleocola
ACS-139-V-Col8]
Length = 158
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 183 PKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLA 242
P Y ++ + LL VVD H+ ID + K W + + A RI +L+IL +A
Sbjct: 45 PDQGYDEVANDYLYLLLNGVVD----HLSEIDAHIEKYLKNWTLARIA-RI-DLNILRVA 98
Query: 243 MSEITVVGTRH---QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
E+ + ++ ++EA++L+K F D + + ING L T + +L + + +K
Sbjct: 99 FFELLYMDKEDVPARVTVDEAIELSKFFSDDKSRQFINGVLATAINDLGQNQDQDEAK 156
>gi|427394118|ref|ZP_18887620.1| transcription antitermination factor NusB [Alloiococcus otitis ATCC
51267]
gi|425730218|gb|EKU93059.1| transcription antitermination factor NusB [Alloiococcus otitis ATCC
51267]
Length = 166
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWK---VWKMDQPAGRILELSILHLAMSEITV 248
L + L V+D H +DK + P K + ++DQ IL+++ L E
Sbjct: 72 LDYLLTLTAGVLD----HEEYLDKQIGPQLKKRSLNRLDQTDHVILQVASYELLFQE--- 124
Query: 249 VGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 289
+VI+EA++LAKRF D + + ING L+ + + E
Sbjct: 125 -DLAPSVVIDEAIELAKRFNDDKSSKFINGVLQAILDSKEA 164
>gi|349702221|ref|ZP_08903850.1| histone-like DNA-binding protein HU [Gluconacetobacter europaeus
LMG 18494]
Length = 192
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 204 DKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVD 262
D+ DA +H ++P W + ++D P R +I+H A E+T +++INE +D
Sbjct: 83 DRIDALLH---DILPASWPLARLD-PVLR----AIMHAAGGEMTGADPIPARVIINEYMD 134
Query: 263 LAKRFCDGAAPRIINGCLRTFVRNL 287
+A F G PR++NG L R +
Sbjct: 135 IAHGFLAGDEPRMLNGVLDALSRRI 159
>gi|390629920|ref|ZP_10257911.1| N utilization substance protein B homolog [Weissella confusa LBAE
C39-2]
gi|390484885|emb|CCF30259.1| N utilization substance protein B homolog [Weissella confusa LBAE
C39-2]
Length = 140
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 165 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVW 224
+ D E A+ +VL P++ + L ++ ++D D I + + W +
Sbjct: 22 MNPDAEVEAVVQQVLDGDPEITWEDELPTDLLDMVNGIIDHQDEFDLTISEHLADGWTLD 81
Query: 225 KMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
+++ + ++ ++ LA+ E+ T +I +NEA+ LA F D ++ + ING L
Sbjct: 82 RLN-----LADIVLMRLALYEVKYTETPAKIAVNEALQLAHDFTDDSSRKFINGILN 133
>gi|87123339|ref|ZP_01079190.1| Antitermination protein NusB [Synechococcus sp. RS9917]
gi|86169059|gb|EAQ70315.1| Antitermination protein NusB [Synechococcus sp. RS9917]
Length = 219
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID + + + W++ + RI + IL LA+ ++T + T + NEAV+LA R+ D
Sbjct: 141 IDARLDGVMEGWRLSRLP-RI-DRDILRLAVVDLTALHTPAAVACNEAVELAHRYSDDQG 198
Query: 273 PRIINGCLRTF 283
R+ING LR
Sbjct: 199 RRMINGVLRRL 209
>gi|407979674|ref|ZP_11160484.1| transcription antitermination protein NusB [Bacillus sp. HYC-10]
gi|407413686|gb|EKF35375.1| transcription antitermination protein NusB [Bacillus sp. HYC-10]
Length = 130
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVG 250
F +L+ V+++ D +D ++ WK+D+ A IL LS+ + E V
Sbjct: 40 FFEELVFGVLEQKDK----LDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVS 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ +NEA++LAK F D AP+ +NG L +L+
Sbjct: 96 ----VSMNEAIELAKVFGDDKAPKFVNGVLSNIKNDLK 129
>gi|254431134|ref|ZP_05044837.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001]
gi|197625587|gb|EDY38146.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001]
Length = 211
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
ID+ + + + W++ + P RI + IL LA ++ T + NEAVDLA R+ D
Sbjct: 136 IDRRLDAVMEGWRLTRLP--RI-DRDILRLAAVDLADFHTPAPVACNEAVDLANRYSDER 192
Query: 272 APRIINGCLRTFV 284
R+ING LR +
Sbjct: 193 GRRMINGVLRRYT 205
>gi|168186196|ref|ZP_02620831.1| transcription antitermination factor NusB [Clostridium botulinum C
str. Eklund]
gi|169295703|gb|EDS77836.1| transcription antitermination factor NusB [Clostridium botulinum C
str. Eklund]
Length = 133
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEA 260
+V+ + + IDK + WK+++ + ++L+IL ++ EI + +++ +NEA
Sbjct: 50 IVNGIEQNKEDIDKRIEENLTKWKLNRLSK--IDLTILRISTYEIMFMEDIPNKVAVNEA 107
Query: 261 VDLAKRFCDGAAPRIINGCLRTFVR 285
++LAK++ +P +NG L +R
Sbjct: 108 IELAKKYSADNSPAFVNGVLGNMIR 132
>gi|443631725|ref|ZP_21115905.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|443347840|gb|ELS61897.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 131
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGA 271
+D+++ WK+D+ A ++ +IL LA E+ V + +NEA++LAKRF D
Sbjct: 55 LDEMISKHLVNWKLDRIAN--VDRAILRLAAYEMAYVEDIPVNVSMNEAIELAKRFGDDK 112
Query: 272 APRIINGCLRTFVRNLEGT 290
A + +NG L ++E +
Sbjct: 113 ATKFVNGVLSNIKSDIEQS 131
>gi|317968466|ref|ZP_07969856.1| transcription antitermination protein NusB [Synechococcus sp.
CB0205]
Length = 208
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
+D+ + + + W++ + P ++ IL LA +I T + NEAV+LA R+ D
Sbjct: 133 LDQRLDAVMEGWRLTRLPR---IDRDILRLAAVDIEQFNTPAPVACNEAVELANRYSDEQ 189
Query: 272 APRIINGCLRTFV 284
R+ING LR F
Sbjct: 190 GRRMINGVLRRFT 202
>gi|417951325|ref|ZP_12594431.1| transcription antitermination protein NusB [Vibrio splendidus ATCC
33789]
gi|342804990|gb|EGU40272.1| transcription antitermination protein NusB [Vibrio splendidus ATCC
33789]
Length = 155
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E + +E S DEEE+ +A P L + + + R LL V +
Sbjct: 26 ITKENIATVEEQFLSGGKYDEEENH------AAEPALAMPETDVAYFRDLLTGVAL---S 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H+ + K+ P + + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HMELDSKLRPFVSRPMQDLD-----LMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEDSHKFVNGVL 145
>gi|229552487|ref|ZP_04441212.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
LMS2-1]
gi|423078809|ref|ZP_17067486.1| transcription antitermination factor NusB [Lactobacillus rhamnosus
ATCC 21052]
gi|229314039|gb|EEN80012.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
LMS2-1]
gi|357549097|gb|EHJ30945.1| transcription antitermination factor NusB [Lactobacillus rhamnosus
ATCC 21052]
Length = 139
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 186 VYSKLLLRFTR--KLLVAVVDKWDAHVHIIDKVVPPI----WKVWKMDQPAGRILELSIL 239
VY+++L + T L A+V+ A+ +D + P W + ++ +P +L IL
Sbjct: 33 VYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKP-----DLIIL 87
Query: 240 HLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
L + EI INEA++LAKR+ D + + +NG L F+
Sbjct: 88 RLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGILANFI 133
>gi|154149182|ref|YP_001405652.1| transcription antitermination protein NusB [Campylobacter hominis
ATCC BAA-381]
gi|166215676|sp|A7HZG1.1|NUSB_CAMHC RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|153805191|gb|ABS52198.1| transcription antitermination factor NusB [Campylobacter hominis
ATCC BAA-381]
Length = 131
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
+F KL V +V+ ID + +K+ Q +E +IL L EI
Sbjct: 43 KFADKLFNGVC----KNVNQIDNELDKYLNEYKISQIG--TVERAILRLGAYEIMYEAID 96
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
I+INEA++LAK ++P+ ING L
Sbjct: 97 KAIIINEAIELAKELAGESSPKFINGVL 124
>gi|377831218|ref|ZP_09814199.1| transcription antitermination protein NusB [Lactobacillus mucosae
LM1]
gi|377554896|gb|EHT16594.1| transcription antitermination protein NusB [Lactobacillus mucosae
LM1]
Length = 135
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 165 LRSDEE--ESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWK 222
L SD E AI AE L P L +L A D+ DA I+ + P W
Sbjct: 19 LASDPEIDREAIYAERLGLKPDEEVPAYLPELVNGVL-AHQDELDAQ---IESKLAPGWT 74
Query: 223 VWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+ ++ +P +L IL LA+ E+ + + INEA+ LA F D + R ING L
Sbjct: 75 LSRLARP-----DLVILRLALYELEYTQVPNAVAINEALRLAHDFSDEKSYRFINGVL 127
>gi|333979356|ref|YP_004517301.1| NusB antitermination factor [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822837|gb|AEG15500.1| NusB antitermination factor [Desulfotomaculum kuznetsovii DSM 6115]
Length = 164
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 97 RAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTE 156
R ARE AL V+Y + DP E+ LN RE + +
Sbjct: 4 RQAREAALQVLYQVDVARVDP----EEALNHLRE----------------------MASP 37
Query: 157 TVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKV 216
++DE + +EE+ AE+ P+ + F R+L+ + AH+ D+V
Sbjct: 38 NPGDSDESDQVNEED----AEIAYLSPRDML------FARELVAGTL----AHLKAFDRV 83
Query: 217 VPPIWKVWKMDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRFCDGAAPRI 275
+ + + W + + A ++ +I+ +A+ EI + + +NEAV+LAK F + R
Sbjct: 84 IARLSRDWPLYRMAA--VDRNIMRMALYEIFHREDIPNSVAVNEAVELAKTFGGPDSSRF 141
Query: 276 INGCLRTFVRN 286
ING L V++
Sbjct: 142 INGILGRVVKD 152
>gi|419543742|ref|ZP_14082719.1| transcription antitermination protein NusB [Campylobacter coli
2553]
gi|419557612|ref|ZP_14095517.1| transcription antitermination protein NusB [Campylobacter coli
80352]
gi|419653973|ref|ZP_14184929.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-872]
gi|419659880|ref|ZP_14190387.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-979]
gi|419662918|ref|ZP_14193125.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-4]
gi|419665383|ref|ZP_14195453.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-7]
gi|419686343|ref|ZP_14214777.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1798]
gi|380526326|gb|EIA51793.1| transcription antitermination protein NusB [Campylobacter coli
2553]
gi|380541692|gb|EIA65946.1| transcription antitermination protein NusB [Campylobacter coli
80352]
gi|380631954|gb|EIB50091.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-872]
gi|380638335|gb|EIB55906.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-979]
gi|380643713|gb|EIB60931.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-7]
gi|380644013|gb|EIB61218.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-4]
gi|380664628|gb|EIB80223.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1798]
Length = 132
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E +IL L E+ T IVINEA++LAK + +P+ ING L ++
Sbjct: 78 IERAILRLGAYELLFTDTPSAIVINEAIELAKELANDNSPKFINGVLDALIK 129
>gi|269124204|ref|YP_003306781.1| NusB antitermination factor [Streptobacillus moniliformis DSM
12112]
gi|268315530|gb|ACZ01904.1| NusB antitermination factor [Streptobacillus moniliformis DSM
12112]
Length = 133
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 238 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
IL +A EI H+IVINEAV+L+K + D ING L +++++
Sbjct: 82 ILKMAFFEILFEKVGHEIVINEAVELSKVYGDEKTKTFINGILADLIKDID 132
>gi|357639272|ref|ZP_09137145.1| transcription antitermination factor NusB [Streptococcus urinalis
2285-97]
gi|418418030|ref|ZP_12991221.1| transcription antitermination factor NusB [Streptococcus urinalis
FB127-CNA-2]
gi|357587726|gb|EHJ57134.1| transcription antitermination factor NusB [Streptococcus urinalis
2285-97]
gi|410869129|gb|EKS17092.1| transcription antitermination factor NusB [Streptococcus urinalis
FB127-CNA-2]
Length = 144
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPP-IWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQI 255
L+ +V+ ++H I++++ + K W +++ + + ++L L + EI T ++
Sbjct: 55 FLINLVNGVESHTEEINQLITSHLKKGWSLERLT--LTDKTLLRLGLYEIKFFDETPSRV 112
Query: 256 VINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NE +++AK++ D + + +NG L FV
Sbjct: 113 AVNEIIEIAKKYSDETSSKFVNGLLSQFV 141
>gi|223041028|ref|ZP_03611286.1| transcription antitermination factor NusB [Campylobacter rectus
RM3267]
gi|222877700|gb|EEF12823.1| transcription antitermination factor NusB [Campylobacter rectus
RM3267]
Length = 131
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H +D ++ K WK+++ +E ++L L E+ T ++INE ++L K
Sbjct: 55 HADGLDALLNARLKEWKINEIGS--IERAVLRLGAYEMKFTPTDKAVIINEGIELGKELG 112
Query: 269 DGAAPRIINGCLRTFVRNL 287
+AP+ ING L +L
Sbjct: 113 GDSAPKFINGVLDALKADL 131
>gi|222526903|ref|YP_002571374.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
gi|254772624|sp|B9LDT2.1|NUSB_CHLSY RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|222450782|gb|ACM55048.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
Length = 151
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVV---PPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
F R+L V W+ H +D+++ P W V +M +L +++ L + ++
Sbjct: 51 FLRRL---VFGAWE-HRSYLDRIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVE--R 104
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
T + VINEAV+LAK+F + R +NG L T V
Sbjct: 105 TPIKAVINEAVELAKQFGSDNSSRFVNGVLGTVV 138
>gi|348026251|ref|YP_004766056.1| N utilization substance protein B [Megasphaera elsdenii DSM 20460]
gi|341822305|emb|CCC73229.1| N utilization substance protein B homolog [Megasphaera elsdenii DSM
20460]
Length = 148
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W + +M++ IL L++ L + T+ + IV+NEAV LAK F + R +NG L
Sbjct: 84 WDIERMNRTDRNILRLALCELVYPKETLAPS---IVLNEAVILAKEFSGDKSARFVNGIL 140
Query: 281 RTFVR 285
+VR
Sbjct: 141 GAYVR 145
>gi|194476880|ref|YP_002049059.1| transcription antitermination protein NusB [Paulinella
chromatophora]
gi|171191887|gb|ACB42849.1| transcription antitermination protein NusB [Paulinella
chromatophora]
Length = 203
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + + W++ + ++ IL LA ++ +GT + NEAV++A R+ D
Sbjct: 131 IDQRLDAVMENWRLIRLPR--IDRDILRLASVDLDRLGTPAAVACNEAVEMANRYSDEQG 188
Query: 273 PRIINGCLRTFV 284
R+ING LR +
Sbjct: 189 RRMINGILRRLI 200
>gi|90961508|ref|YP_535424.1| transcription antitermination protein NusB [Lactobacillus
salivarius UCC118]
gi|227890595|ref|ZP_04008400.1| transcription antitermination protein NusB [Lactobacillus
salivarius ATCC 11741]
gi|119390778|sp|Q1WUJ4.1|NUSB_LACS1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|90820702|gb|ABD99341.1| N utilization substance protein B [Lactobacillus salivarius UCC118]
gi|227867533|gb|EEJ74954.1| transcription antitermination protein NusB [Lactobacillus
salivarius ATCC 11741]
Length = 131
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 180 SAPPKLVYSKLL--------LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAG 231
A + +Y +LL L + +L+ V+D I K + W + ++++
Sbjct: 24 DANSEDIYQELLDEDNNDSDLSYLNELVDGVLDHQSEIDMEITKYLRKNWNIGRLNKT-- 81
Query: 232 RILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+L IL +A+ EI +I +NEAV+LAK F D + + +N L+ +
Sbjct: 82 ---DLIILRIAIFEIKYSDVASKIAVNEAVELAKEFSDDKSYKFVNAILQNLI 131
>gi|23099336|ref|NP_692802.1| transcription antitermination protein NusB [Oceanobacillus
iheyensis HTE831]
gi|32171652|sp|Q8EQ42.1|NUSB_OCEIH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|22777565|dbj|BAC13837.1| transcriptional terminator [Oceanobacillus iheyensis HTE831]
Length = 126
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F R L+ V+ H +ID+ + + W +D+ A +E +IL +A+ EI +
Sbjct: 40 FLRSLVEGVI----QHKSVIDEKISTHLEKWTIDRIAS--VERTILRMAILEIMYIDDIP 93
Query: 254 QIV-INEAVDLAKRFCDGAAPRIINGCLRTFV 284
Q V INEA++LA F D + + +NG L +
Sbjct: 94 QNVSINEAIELAHTFGDEQSGKFVNGVLSKII 125
>gi|163848950|ref|YP_001636994.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
J-10-fl]
gi|163670239|gb|ABY36605.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
J-10-fl]
Length = 153
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVV---PPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
F R+L V W+ H +D+++ P W V +M +L +++ L + ++
Sbjct: 53 FLRRL---VFGAWE-HRSYLDRIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVE--R 106
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
T + VINEAV+LAK+F + R +NG L T V
Sbjct: 107 TPIKAVINEAVELAKQFGSDNSSRFVNGVLGTVV 140
>gi|424781533|ref|ZP_18208391.1| Transcription termination protein NusB [Campylobacter showae
CSUNSWCD]
gi|421960819|gb|EKU12421.1| Transcription termination protein NusB [Campylobacter showae
CSUNSWCD]
Length = 131
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H +D ++ K WK+++ +E ++L L E+ T ++INE ++L K
Sbjct: 55 HADELDGLLNARLKEWKINEIGS--IERAVLRLGAYEMKFTPTDKAVIINEGIELGKELG 112
Query: 269 DGAAPRIINGCLRTFVRNL 287
+AP+ ING L +L
Sbjct: 113 GDSAPKFINGVLDALKADL 131
>gi|260767831|ref|ZP_05876766.1| transcription termination protein NusB [Vibrio furnissii CIP
102972]
gi|375130165|ref|YP_004992265.1| N utilization substance protein B [Vibrio furnissii NCTC 11218]
gi|260617340|gb|EEX42524.1| transcription termination protein NusB [Vibrio furnissii CIP
102972]
gi|315179339|gb|ADT86253.1| N utilization substance protein B [Vibrio furnissii NCTC 11218]
Length = 156
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 166 RSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWK-VW 224
+ DEEE L+AP V + R LL VV H + K+ P + + +
Sbjct: 43 KYDEEEHHASEPALAAPETDV------AYFRDLLAGVVLN---HTELDSKLRPFVSRPMQ 93
Query: 225 KMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+D ++EL++L LAM E+T +++VINEA++LAK F + + +NG L
Sbjct: 94 DLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>gi|119945180|ref|YP_942860.1| NusB antitermination factor [Psychromonas ingrahamii 37]
gi|229620369|sp|A1SUU6.1|NUSB_PSYIN RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|119863784|gb|ABM03261.1| NusB antitermination factor [Psychromonas ingrahamii 37]
Length = 145
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 12/98 (12%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIW--KVWKMDQPAGRILELSILHLAMSEITV-VG 250
+ ++LL V+ + V +D+ + P K+ +D +++ ++L LAM E+T
Sbjct: 49 YFKELLTGVIHR----VDFLDEKLSPYLSRKIEDVD-----MVDKAVLRLAMFELTQRTD 99
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
H++V+NEA++LAK F + + +NG L +R+L+
Sbjct: 100 IPHKVVLNEAIELAKDFATDESYKFVNGVLDKALRSLK 137
>gi|199597165|ref|ZP_03210597.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
HN001]
gi|258508679|ref|YP_003171430.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
GG]
gi|258539856|ref|YP_003174355.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
Lc 705]
gi|385828340|ref|YP_005866112.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
GG]
gi|385835508|ref|YP_005873282.1| transcription antitermination factor NusB [Lactobacillus rhamnosus
ATCC 8530]
gi|418070855|ref|ZP_12708130.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
R0011]
gi|199591969|gb|EDZ00044.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
HN001]
gi|257148606|emb|CAR87579.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
GG]
gi|257151532|emb|CAR90504.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
Lc 705]
gi|259649985|dbj|BAI42147.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
GG]
gi|355394999|gb|AER64429.1| transcription antitermination factor NusB [Lactobacillus rhamnosus
ATCC 8530]
gi|357540275|gb|EHJ24292.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
R0011]
Length = 135
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 186 VYSKLLLRFTR--KLLVAVVDKWDAHVHIIDKVVPPI----WKVWKMDQPAGRILELSIL 239
VY+++L + T L A+V+ A+ +D + P W + ++ +P +L IL
Sbjct: 29 VYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKP-----DLIIL 83
Query: 240 HLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
L + EI INEA++LAKR+ D + + +NG L F+
Sbjct: 84 RLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGILANFI 129
>gi|406659745|ref|ZP_11067883.1| transcription antitermination factor NusB [Streptococcus iniae
9117]
gi|405577854|gb|EKB52002.1| transcription antitermination factor NusB [Streptococcus iniae
9117]
Length = 145
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+ VVD D II + + W + ++ + + ++L L + EI T
Sbjct: 54 FLLNLVNGVVDHKDELDAIIKENLKKGWSIERL-----TLTDKTMLRLGLFEIKYFDETP 108
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
++ +NE +++AK++ D + + ING L FV
Sbjct: 109 DRVALNEIIEIAKKYSDDTSAKFINGLLSQFV 140
>gi|318057074|ref|ZP_07975797.1| transcription antitermination protein NusB [Streptomyces sp.
SA3_actG]
gi|318080976|ref|ZP_07988308.1| transcription antitermination protein NusB [Streptomyces sp.
SA3_actF]
gi|333028359|ref|ZP_08456423.1| putative transcription antitermination protein NusB [Streptomyces
sp. Tu6071]
gi|332748211|gb|EGJ78652.1| putative transcription antitermination protein NusB [Streptomyces
sp. Tu6071]
Length = 144
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEA 260
+V+ + H ID+V+ W +D+ +++ +I+ L E+ V GT +V++EA
Sbjct: 52 LVEGYAEHARRIDEVIAKYSVDWPLDRMP--VVDRNIVRLGAHELVWVDGTPDAVVMDEA 109
Query: 261 VDLAKRFCDGAAPRIINGCLRTFVRNLE 288
V+LAK F +P +NG L F +NL+
Sbjct: 110 VELAKEFSTDDSPAFVNGLLGRF-KNLK 136
>gi|269103251|ref|ZP_06155948.1| transcription termination protein NusB [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163149|gb|EEZ41645.1| transcription termination protein NusB [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 152
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 168 DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWK-VWKM 226
+EEE EA VL+AP V + R L VV H + K+ P + + + +
Sbjct: 41 EEEEYQAEAPVLAAPHTDV------NYFRDLFTGVVLN---HQDLDSKMRPYLSRPLQDL 91
Query: 227 DQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
DQ +EL++L LAM E + ++VINEA++LAK F + + +NG L
Sbjct: 92 DQ-----MELALLRLAMYEMVKREDVPFKVVINEAIELAKLFGAEDSHKFVNGVL 141
>gi|116074285|ref|ZP_01471547.1| transcription antitermination protein NusB [Synechococcus sp.
RS9916]
gi|116069590|gb|EAU75342.1| transcription antitermination protein NusB [Synechococcus sp.
RS9916]
Length = 213
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID + + + W++ + RI + IL LA+ + T + T + NEAV+LA R+ D
Sbjct: 134 IDARLDGVMEGWRLSRLP-RI-DRDILRLAVVDFTSLKTPSAVACNEAVELANRYSDDQG 191
Query: 273 PRIINGCLRTF 283
R+ING LR
Sbjct: 192 RRMINGVLRRL 202
>gi|410595066|ref|YP_006951793.1| N utilization substance protein B [Streptococcus agalactiae
SA20-06]
gi|421531861|ref|ZP_15978238.1| transcription antitermination protein NusB [Streptococcus
agalactiae STIR-CD-17]
gi|403642962|gb|EJZ03762.1| transcription antitermination protein NusB [Streptococcus
agalactiae STIR-CD-17]
gi|410518705|gb|AFV72849.1| N utilization substance protein B [Streptococcus agalactiae
SA20-06]
Length = 144
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+ VVD D +I + W++ ++ +++ S+L L + EI T
Sbjct: 54 FLLNLVNGVVDHKDELDTLISSHLKSGWRLERL-----TLVDKSLLRLGLYEIKYFNETP 108
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++ +NE +++AK++ D + + +NG L F+ N
Sbjct: 109 DRVALNEIIEIAKKYSDETSAKFVNGLLSQFITN 142
>gi|302517963|ref|ZP_07270305.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
gi|302426858|gb|EFK98673.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
Length = 144
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEA 260
+V+ + H ID+V+ W +D+ +++ +I+ L E+ V GT +V++EA
Sbjct: 52 LVEGYAEHARRIDEVIAKYSVDWPLDRMP--VVDRNIVRLGAHELVWVDGTPDAVVMDEA 109
Query: 261 VDLAKRFCDGAAPRIINGCLRTFVRNLE 288
V+LAK F +P +NG L F +NL+
Sbjct: 110 VELAKEFSTDDSPAFVNGLLGRF-KNLK 136
>gi|254507845|ref|ZP_05119975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
16]
gi|323491732|ref|ZP_08096910.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
20546]
gi|323497970|ref|ZP_08102979.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
21326]
gi|219549218|gb|EED26213.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
16]
gi|323314094|gb|EGA67180.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
20546]
gi|323317015|gb|EGA70017.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
21326]
Length = 155
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE LS P V + R LL VV +
Sbjct: 26 ITKENVATIEEQFLSGGKYDEEEHHASEPALSTPDTDV------AYFRDLLTGVVL---S 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HTELDSKIRPYTARPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEESHKFVNGVL 145
>gi|153814701|ref|ZP_01967369.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
gi|317500231|ref|ZP_07958461.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331087539|ref|ZP_08336471.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336439984|ref|ZP_08619584.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145847732|gb|EDK24650.1| transcription antitermination factor NusB [Ruminococcus torques
ATCC 27756]
gi|316898357|gb|EFV20398.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330401757|gb|EGG81335.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336014569|gb|EGN44414.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 135
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 208 AHVHIIDKVV---PPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDL 263
+H+ ID ++ WK +M++ ++LSIL LA+ EI ++ INEAV+L
Sbjct: 56 SHIEEIDGLLNENATGWKTTRMNK-----VDLSILRLALYEIKWDEDVPAKVAINEAVEL 110
Query: 264 AKRFCDGAAPRIINGCLRTFVR 285
AKRF + +NG L F +
Sbjct: 111 AKRFGGDNSSSFVNGVLAKFAK 132
>gi|57237437|ref|YP_178450.1| transcription antitermination protein NusB [Campylobacter jejuni
RM1221]
gi|86148965|ref|ZP_01067197.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88597364|ref|ZP_01100599.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 84-25]
gi|148926474|ref|ZP_01810157.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|205355968|ref|ZP_03222736.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218562040|ref|YP_002343819.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni NCTC 11168 = ATCC 700819]
gi|384442718|ref|YP_005658970.1| Transcription termination protein NusB [Campylobacter jejuni subsp.
jejuni S3]
gi|384447670|ref|YP_005655721.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni IA3902]
gi|403055163|ref|YP_006632568.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni NCTC 11168-BN148]
gi|407941829|ref|YP_006857469.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni PT14]
gi|415733883|ref|ZP_11474381.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni DFVF1099]
gi|419588111|ref|ZP_14123937.1| transcription antitermination protein NusB [Campylobacter coli
317/04]
gi|419617932|ref|ZP_14151496.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 129-258]
gi|419619914|ref|ZP_14153372.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 51494]
gi|419624377|ref|ZP_14157486.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23218]
gi|419625426|ref|ZP_14158442.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23223]
gi|419627267|ref|ZP_14160175.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23263]
gi|419629884|ref|ZP_14162597.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 60004]
gi|419631903|ref|ZP_14164471.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23264]
gi|419632825|ref|ZP_14165277.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23269]
gi|419637389|ref|ZP_14169560.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 9879]
gi|419639693|ref|ZP_14171711.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 86605]
gi|419640109|ref|ZP_14172047.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23357]
gi|419642792|ref|ZP_14174570.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni ATCC 33560]
gi|419644704|ref|ZP_14176279.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 9081]
gi|419646291|ref|ZP_14177762.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 53161]
gi|419648528|ref|ZP_14179866.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 9217]
gi|419649491|ref|ZP_14180729.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-1025]
gi|419652301|ref|ZP_14183380.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-894]
gi|419656136|ref|ZP_14186958.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-988]
gi|419661358|ref|ZP_14191684.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-831]
gi|419666806|ref|ZP_14196798.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-10]
gi|419670859|ref|ZP_14200542.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-14]
gi|419672743|ref|ZP_14202231.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 51037]
gi|419675087|ref|ZP_14204361.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 110-21]
gi|419676924|ref|ZP_14206086.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 87330]
gi|419678406|ref|ZP_14207460.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 87459]
gi|419681179|ref|ZP_14210024.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 140-16]
gi|419684707|ref|ZP_14213291.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1577]
gi|419687763|ref|ZP_14216098.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1854]
gi|419690313|ref|ZP_14218524.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1893]
gi|419691965|ref|ZP_14220070.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1928]
gi|419696041|ref|ZP_14223920.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23210]
gi|424847214|ref|ZP_18271796.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni NW]
gi|424850481|ref|ZP_18274892.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni D2600]
gi|22095973|sp|Q9PIC0.1|NUSB_CAMJE RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|73621331|sp|Q5HW85.1|NUSB_CAMJR RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|57166241|gb|AAW35020.1| transcription antitermination factor NusB [Campylobacter jejuni
RM1221]
gi|85840323|gb|EAQ57580.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88190425|gb|EAQ94399.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112359746|emb|CAL34532.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|145844637|gb|EDK21743.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|205346092|gb|EDZ32727.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|284925653|gb|ADC28005.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni IA3902]
gi|315057805|gb|ADT72134.1| Transcription termination protein NusB [Campylobacter jejuni subsp.
jejuni S3]
gi|315926706|gb|EFV06085.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni DFVF1099]
gi|356485501|gb|EHI15494.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni NW]
gi|356486749|gb|EHI16723.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni D2600]
gi|380570885|gb|EIA93299.1| transcription antitermination protein NusB [Campylobacter coli
317/04]
gi|380596254|gb|EIB16955.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 129-258]
gi|380598795|gb|EIB19184.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23218]
gi|380602205|gb|EIB22498.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 51494]
gi|380604897|gb|EIB24895.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23223]
gi|380606957|gb|EIB26841.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23263]
gi|380607046|gb|EIB26928.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 60004]
gi|380609788|gb|EIB29427.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23264]
gi|380613534|gb|EIB33009.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23269]
gi|380615451|gb|EIB34706.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 9879]
gi|380615576|gb|EIB34818.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 86605]
gi|380619817|gb|EIB38853.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23357]
gi|380621602|gb|EIB40399.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 9081]
gi|380623866|gb|EIB42547.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni ATCC 33560]
gi|380624003|gb|EIB42681.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 53161]
gi|380626275|gb|EIB44756.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 9217]
gi|380629580|gb|EIB47836.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-894]
gi|380630024|gb|EIB48269.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-1025]
gi|380635820|gb|EIB53585.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-988]
gi|380640114|gb|EIB57574.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 2008-831]
gi|380647256|gb|EIB64180.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-10]
gi|380650171|gb|EIB66822.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-14]
gi|380652038|gb|EIB68543.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 110-21]
gi|380655124|gb|EIB71452.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 51037]
gi|380655283|gb|EIB71600.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 87330]
gi|380658837|gb|EIB74833.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 140-16]
gi|380660832|gb|EIB76767.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 87459]
gi|380666536|gb|EIB82070.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1577]
gi|380666594|gb|EIB82125.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1854]
gi|380669134|gb|EIB84427.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1893]
gi|380671206|gb|EIB86433.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1928]
gi|380676271|gb|EIB91156.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23210]
gi|401780815|emb|CCK66509.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni NCTC 11168-BN148]
gi|407905667|gb|AFU42496.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni PT14]
Length = 132
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E +IL L E+ T IVINEA++LAK + +P+ ING L ++
Sbjct: 78 VERAILRLGAYELLFTDTPSAIVINEAIELAKELANDNSPKFINGVLDALIK 129
>gi|427703575|ref|YP_007046797.1| transcription antitermination factor NusB [Cyanobium gracile PCC
6307]
gi|427346743|gb|AFY29456.1| transcription antitermination factor NusB [Cyanobium gracile PCC
6307]
Length = 208
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 213 IDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
+D + + + W++ + P ++ IL LA+ ++ GT + +EAV+LA R+ D
Sbjct: 135 LDGRIDAVMEGWRLTRLPR---VDRDILRLAVVDLEDFGTPAAVACSEAVELANRYSDEQ 191
Query: 272 APRIINGCLRTFV 284
R+ING LR F
Sbjct: 192 GRRMINGVLRRFT 204
>gi|347532050|ref|YP_004838813.1| NusB antitermination factor [Roseburia hominis A2-183]
gi|345502198|gb|AEN96881.1| NusB antitermination factor [Roseburia hominis A2-183]
Length = 131
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 208 AHVHIIDKVVPPI---WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLA 264
AH+ ID+ + + WK +M + ++ L++ + E VG + INEAV+LA
Sbjct: 56 AHLAEIDEAIDAVAEGWKTGRMGKVDLTLIRLAVYEMKYDEDVPVG----VAINEAVELA 111
Query: 265 KRFCDGAAPRIINGCLRTFV 284
K++ +P ING L V
Sbjct: 112 KKYGTDESPAFINGVLAKLV 131
>gi|406950557|gb|EKD80795.1| hypothetical protein ACD_40C00009G0006 [uncultured bacterium]
Length = 107
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
W +D+ RI +L+IL ++ E+ T ++VI+EA+++AK++ + P ING L T
Sbjct: 43 WPLDK-INRI-DLAILRVSTDELMNSNTPPKVVIDEAIEIAKKYGAESTPSFINGVLGTI 100
Query: 284 VRNLE 288
+ E
Sbjct: 101 LTKKE 105
>gi|425019589|ref|ZP_18429937.1| transcription antitermination factor NusB [Enterococcus faecium
C497]
gi|403011140|gb|EJY24469.1| transcription antitermination factor NusB [Enterococcus faecium
C497]
Length = 149
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-VVGTR 252
+ L+ V K D +I+K + W + ++ + ++L IL +A+ E+T V
Sbjct: 56 YLDTLVGGVCAKKDELDKVIEKNLKNNWHINRISK-----MDLVILRIAIFEMTYVTDVP 110
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+ +NEA++LAK F D + + +NG L ++ LE A
Sbjct: 111 AAVALNEAIELAKTFSDDRSRKFVNGVLSNVLKELEAGA 149
>gi|406875229|gb|EKD25047.1| transcription antitermination protein NusB, partial [uncultured
bacterium (gcode 4)]
Length = 171
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
L+ +I L +E + T +++INE ++LAKR+ D AP+++NG + +
Sbjct: 114 LDQAIFLLGYTEWKELETPKEVIINEMIELAKRYSDEWAPKLLNGIMHKII 164
>gi|352096730|ref|ZP_08957486.1| NusB antitermination factor [Synechococcus sp. WH 8016]
gi|351675952|gb|EHA59110.1| NusB antitermination factor [Synechococcus sp. WH 8016]
Length = 210
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ + + W++ + RI + IL LA+ +++ + T + NEAV+LA RF D
Sbjct: 133 IDQLLDGVMEGWRLTR-LPRI-DRDILRLAVIDLSELNTPAAVACNEAVELAHRFSDEQG 190
Query: 273 PRIINGCLRTF 283
++ING LR
Sbjct: 191 RKMINGVLRRL 201
>gi|377556677|ref|ZP_09786370.1| NusB-like protein [Lactobacillus gastricus PS3]
gi|376168077|gb|EHS86886.1| NusB-like protein [Lactobacillus gastricus PS3]
Length = 138
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 170 EESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQP 229
++ I EVL+ PK + + F ++L+ V+ D I + W + ++ +P
Sbjct: 26 DQYPIFQEVLALNPK----EPVPEFAQQLVDGVLSHQDELDEKISASLAKGWTLARVARP 81
Query: 230 AGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
IL L+I L + T +VINEA+ LAK F D + R +NG L
Sbjct: 82 NVIILRLAIYELEYDQ----STPAPVVINEALQLAKTFSDDKSRRFVNGVL 128
>gi|86151316|ref|ZP_01069531.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86153756|ref|ZP_01071959.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|121612229|ref|YP_001000093.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 81-176]
gi|157414677|ref|YP_001481933.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 81116]
gi|283955805|ref|ZP_06373296.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 1336]
gi|315123942|ref|YP_004065946.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|384441034|ref|YP_005657337.1| N utilization substance protein B-like protein [Campylobacter
jejuni subsp. jejuni M1]
gi|415744579|ref|ZP_11474608.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 327]
gi|419621946|ref|ZP_14155191.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23216]
gi|419635640|ref|ZP_14167942.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 55037]
gi|419657833|ref|ZP_14188479.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-1]
gi|419669305|ref|ZP_14199092.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-11]
gi|419683473|ref|ZP_14212169.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1213]
gi|419694389|ref|ZP_14222354.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 9872]
gi|166215678|sp|A1VYA2.1|NUSB_CAMJJ RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|172047054|sp|A8FKG9.1|NUSB_CAMJ8 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|85841663|gb|EAQ58910.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85842717|gb|EAQ59929.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|87250180|gb|EAQ73138.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 81-176]
gi|157385641|gb|ABV51956.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|283792760|gb|EFC31538.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 1336]
gi|307747317|gb|ADN90587.1| N utilization substance protein B-like protein [Campylobacter
jejuni subsp. jejuni M1]
gi|315017664|gb|ADT65757.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|315932685|gb|EFV11615.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 327]
gi|380600838|gb|EIB21164.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 23216]
gi|380612416|gb|EIB31943.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 55037]
gi|380634198|gb|EIB52093.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-1]
gi|380647536|gb|EIB64447.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1997-11]
gi|380658580|gb|EIB74586.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 1213]
gi|380670741|gb|EIB85986.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni LMG 9872]
Length = 132
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E +IL L E+ T IVINEA++LAK + +P+ ING L ++
Sbjct: 78 VERAILRLGAYELLFTDTPSAIVINEAIELAKELANDNSPKFINGVLDALIK 129
>gi|194333302|ref|YP_002015162.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
gi|238693314|sp|B4S517.1|NUSB_PROA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|194311120|gb|ACF45515.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
Length = 168
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-G 250
+RF ++LL A+VD + ID+ + W M + A I++ +IL +AM+EI
Sbjct: 45 IRFFKQLLGAIVDNREE----IDQYISKHTFNWDMSRIA--IIDKNILRMAMAEILYFED 98
Query: 251 TRHQIVINEAVDLAKRF-CDGAAPRIINGCLRTFVRNLEGTANI 293
++ INEA+++AK+F + + +NG L +L + I
Sbjct: 99 IPPKVSINEAIEIAKKFNSTDKSSKFVNGILDAVYNDLNKSGKI 142
>gi|417810503|ref|ZP_12457182.1| transcription antitermination factor NusB [Lactobacillus salivarius
GJ-24]
gi|335349299|gb|EGM50799.1| transcription antitermination factor NusB [Lactobacillus salivarius
GJ-24]
Length = 116
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L + +L+ V+D I K + W + ++++ +L IL +A+ EI
Sbjct: 29 LSYLNELVDGVLDHQSEIDMEITKYLRKNWNIGRLNKT-----DLIILRIAIFEIKYSDV 83
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+I +NEAV+LAK F D + + +N L+ +
Sbjct: 84 ASKIAVNEAVELAKEFSDDKSYKFVNAILQNLI 116
>gi|89073134|ref|ZP_01159673.1| transcription antitermination protein NusB [Photobacterium sp.
SKA34]
gi|89051087|gb|EAR56544.1| transcription antitermination protein NusB [Photobacterium sp.
SKA34]
Length = 156
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 168 DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWK-VWKM 226
+EEE +A VL+AP V + R L VV +H + K+ P + + + +
Sbjct: 45 EEEEHQADAPVLAAPHTDV------SYFRDLFTGVVL---SHQELDSKMRPYLSRPLQDL 95
Query: 227 DQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
DQ +EL++L LAM E + ++VINEA++LAK F + + ING L
Sbjct: 96 DQ-----MELALLRLAMYEMVKREDVPFKVVINEAIELAKLFGAEDSHKFINGVL 145
>gi|259046624|ref|ZP_05737025.1| N utilization substance protein B [Granulicatella adiacens ATCC
49175]
gi|259036789|gb|EEW38044.1| N utilization substance protein B [Granulicatella adiacens ATCC
49175]
Length = 153
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 15/112 (13%)
Query: 175 EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRIL 234
E ++++ P++ YS +A+V ++ ID ++ K WK+++ L
Sbjct: 53 EEDLINEVPEIAYS-----------IALVRGVQNNLEKIDGLIEKHSKRWKLNRIVR--L 99
Query: 235 ELSILHLAMSEITV--VGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+L I+ +A+ E+T + + +NEA+++AK + D + + ING L FV
Sbjct: 100 DLIIMRVAIFEMTSPELEVPQTVALNEAIEIAKTYSDEKSAKFINGILSNFV 151
>gi|154686696|ref|YP_001421857.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens FZB42]
gi|384266048|ref|YP_005421755.1| N utilization substance protein B [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|385265431|ref|ZP_10043518.1| transcription antitermination protein NusB [Bacillus sp. 5B6]
gi|387899067|ref|YP_006329363.1| transcription antitermination protein [Bacillus amyloliquefaciens
Y2]
gi|394992168|ref|ZP_10384960.1| transcription antitermination protein NusB [Bacillus sp. 916]
gi|429505843|ref|YP_007187027.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|452856202|ref|YP_007497885.1| transcription termination factor NusB [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|166215663|sp|A7Z6K0.1|NUSB_BACA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|154352547|gb|ABS74626.1| NusB [Bacillus amyloliquefaciens FZB42]
gi|380499401|emb|CCG50439.1| N utilization substance protein B [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|385149927|gb|EIF13864.1| transcription antitermination protein NusB [Bacillus sp. 5B6]
gi|387173177|gb|AFJ62638.1| transcription antitermination protein [Bacillus amyloliquefaciens
Y2]
gi|393806997|gb|EJD68324.1| transcription antitermination protein NusB [Bacillus sp. 916]
gi|429487433|gb|AFZ91357.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|452080462|emb|CCP22225.1| transcription termination factor NusB [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 130
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
F +L+ V++ H +D+++ WK+D+ A ++ +IL LA+ E+
Sbjct: 40 FFEQLVYGVIE----HQVQLDEMISGHLVNWKLDRIAN--VDRAILRLAVYEMVYSDDIP 93
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ +NEA++LAKRF D A + +NG L ++E
Sbjct: 94 ANVSLNEAIELAKRFGDDKAAKFVNGVLSNIKTDIE 129
>gi|149187999|ref|ZP_01866294.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
gi|148837987|gb|EDL54929.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
Length = 155
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE L+AP V + R LL V
Sbjct: 26 ITKENVATVEEQFLSGGKYDEEEHHAAEPALTAPETDVV------YFRDLLTGVALN--- 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HTELDSKLRPFVSRPMQDLD-----MMELALLRLAMYEMTSREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEDSHKFVNGVL 145
>gi|337746945|ref|YP_004641107.1| transcription antitermination factor NusB [Paenibacillus
mucilaginosus KNP414]
gi|379720807|ref|YP_005312938.1| transcription antitermination factor NusB [Paenibacillus
mucilaginosus 3016]
gi|386723415|ref|YP_006189741.1| transcription antitermination factor NusB [Paenibacillus
mucilaginosus K02]
gi|336298134|gb|AEI41237.1| transcription antitermination factor NusB [Paenibacillus
mucilaginosus KNP414]
gi|378569479|gb|AFC29789.1| transcription antitermination factor NusB [Paenibacillus
mucilaginosus 3016]
gi|384090540|gb|AFH61976.1| transcription antitermination factor NusB [Paenibacillus
mucilaginosus K02]
Length = 154
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKR 266
AH ID ++ K W+MD+ + ++ IL LA E+ ++V+NEA+++AK
Sbjct: 64 AHKRQIDGLLSDYLKGWQMDRLSR--VDRQILRLAAYEMVFRDDVPPKVVVNEAIEMAKH 121
Query: 267 FCDGAAPRIINGCLRTFVRNLE 288
F + + +NG L +++L+
Sbjct: 122 FGTDESGKFVNGVLGKMIKDLD 143
>gi|425007855|ref|ZP_18418970.1| transcription antitermination factor NusB [Enterococcus faecium
ERV1]
gi|425014512|ref|ZP_18425186.1| transcription antitermination factor NusB [Enterococcus faecium
E417]
gi|402994280|gb|EJY08823.1| transcription antitermination factor NusB [Enterococcus faecium
ERV1]
gi|402998579|gb|EJY12828.1| transcription antitermination factor NusB [Enterococcus faecium
E417]
Length = 151
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-VVGTR 252
+ L+ V K D +I+K + W + ++ + ++L IL +A+ E+T V
Sbjct: 56 YLDTLVGGVCAKKDELDKVIEKHLKNNWHINRISK-----MDLVILRIAIFEMTYVTDVP 110
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+ +NEA++LAK F D + + +NG L ++ LE A
Sbjct: 111 AAVALNEAIELAKTFSDDRSRKFVNGVLSNVLKELEAGA 149
>gi|419776962|ref|ZP_14302880.1| transcription antitermination factor NusB [Streptococcus
intermedius SK54]
gi|383845173|gb|EID82577.1| transcription antitermination factor NusB [Streptococcus
intermedius SK54]
Length = 141
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 231 GRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
GR+ +E +IL L + E+T T + +NEA++L+K F + + + ING L F+
Sbjct: 84 GRLTLVEKNILRLGLFEMTEFDTPQLVALNEAIELSKNFSNEKSSKFINGILSKFI 139
>gi|377809787|ref|YP_005005008.1| transcription antitermination factor NusB [Pediococcus claussenii
ATCC BAA-344]
gi|361056528|gb|AEV95332.1| transcription antitermination factor NusB [Pediococcus claussenii
ATCC BAA-344]
Length = 133
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W + ++ +P +L+IL L EI T + + INEA++LAK + D ++ ING L
Sbjct: 74 WTLQRLAKP-----DLTILELGTFEILHTETPNSVAINEAIELAKEYTDESSKSFINGVL 128
>gi|334137148|ref|ZP_08510593.1| transcription antitermination factor NusB [Paenibacillus sp. HGF7]
gi|333605346|gb|EGL16715.1| transcription antitermination factor NusB [Paenibacillus sp. HGF7]
Length = 153
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGA 271
ID+++ K WKMD+ + ++ +L LA E+ ++V+NEA+DLAK F
Sbjct: 68 IDQLLAGYLKGWKMDRLSR--VDREVLRLAAFEMLFQEDVPPKVVVNEAIDLAKHFGTDD 125
Query: 272 APRIINGCLRTFVRNLEGT-ANIEASK 297
+ + +NG L +++++ NI + K
Sbjct: 126 SGKFVNGVLGKMIKDVDALRENIRSGK 152
>gi|257460184|ref|ZP_05625288.1| transcription antitermination factor NusB [Campylobacter gracilis
RM3268]
gi|257442625|gb|EEV17764.1| transcription antitermination factor NusB [Campylobacter gracilis
RM3268]
Length = 342
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 196 RKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQI 255
R +A++ ++ +D ++ K +K+ + + LE +IL L E+ T I
Sbjct: 42 RNWTLALLRGASENLAAVDALIDENLKEFKLAEIS--ALERAILRLGAYELRFTDTDAGI 99
Query: 256 VINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASK 300
VINEA++ AK G +PR ING L + NI A K SK
Sbjct: 100 VINEAINSAKEL--GISPRFINGVLDALK---DSPVNIAADKISK 139
>gi|374318649|ref|YP_005065148.1| transcription termination factor N-utilization substance protein B
[Mycoplasma haemocanis str. Illinois]
gi|363989715|gb|AEW45905.1| transcription antitermination protein NusB [Mycoplasma haemocanis
str. Illinois]
Length = 136
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
+ F K+ ++ ++ +++ + W + +++ SIL A+SE V T
Sbjct: 42 IDFENKIFDNYLNNKHKYISLVESYLKSNWSLERLNTLCA-----SILLEAISEFYVFKT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+++I E+V AK +CD RI+N L F++N
Sbjct: 97 PVKVLITESVKTAKNYCDENEYRIVNRVLEDFLKN 131
>gi|301300970|ref|ZP_07207135.1| transcription antitermination factor NusB [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|417788054|ref|ZP_12435737.1| transcription termination protein NusB [Lactobacillus salivarius
NIAS840]
gi|418961143|ref|ZP_13513030.1| transcription antitermination protein NusB [Lactobacillus
salivarius SMXD51]
gi|300851437|gb|EFK79156.1| transcription antitermination factor NusB [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|334308231|gb|EGL99217.1| transcription termination protein NusB [Lactobacillus salivarius
NIAS840]
gi|380344810|gb|EIA33156.1| transcription antitermination protein NusB [Lactobacillus
salivarius SMXD51]
Length = 131
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L + +L+ V+D I K + W + ++++ +L IL +A+ EI
Sbjct: 44 LSYLNELVDGVLDHQSEIDMEITKYLRKNWNIGRLNKT-----DLIILRIAIFEIKYSDV 98
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+I +NEAV+LAK F D + + +N L+ +
Sbjct: 99 ASKIAVNEAVELAKEFSDDKSYKFVNAILQNLI 131
>gi|429735214|ref|ZP_19269183.1| transcription antitermination factor NusB [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429159326|gb|EKY01841.1| transcription antitermination factor NusB [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 136
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 201 AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQ--IVIN 258
A+V AH+ ID + + K WK+ + A ++ +++ +A E+ R + IN
Sbjct: 50 ALVQGTHAHLEEIDAEIARLAKEWKLHRMAA--VDRNLIRMAYYEMRYQDERIDPPVAIN 107
Query: 259 EAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
EAV+LAK++ A R +NG L ++L
Sbjct: 108 EAVELAKKYGSDDARRYVNGILAAMQKSL 136
>gi|359412684|ref|ZP_09205149.1| NusB antitermination factor [Clostridium sp. DL-VIII]
gi|357171568|gb|EHI99742.1| NusB antitermination factor [Clostridium sp. DL-VIII]
Length = 133
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 150 GPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAH 209
G ++ +T+EE E + EE+ E + L + ++ L+ + + +
Sbjct: 16 GMTLSKDTIEEVIEGFVENYEENIKEID--------------LTYVKQALIGIENNKEE- 60
Query: 210 VHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFC 268
IDKV+ WK+D+ + + LSIL LA E+ + INEA+++A+R+
Sbjct: 61 ---IDKVIEANLHNWKIDRISK--VNLSILRLATYEVLYDKEVPRNVAINEALEIARRYS 115
Query: 269 DGAAPRIINGCL 280
D + ING L
Sbjct: 116 DEKSVAFINGVL 127
>gi|441504648|ref|ZP_20986641.1| Transcription termination protein NusB [Photobacterium sp. AK15]
gi|441427747|gb|ELR65216.1| Transcription termination protein NusB [Photobacterium sp. AK15]
Length = 155
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 168 DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWK-VWKM 226
+EEE +A VL+ P V + R LL VV H + K+ P + + + +
Sbjct: 45 EEEEHQADAPVLAVPQTDV------AYFRDLLTGVVLN---HQELDSKMRPYLSRPLQDL 95
Query: 227 DQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
DQ +EL++L LAM E + +++VINEA++LAK F + + +NG L
Sbjct: 96 DQ-----MELALLRLAMYEMVKRDDVPYKVVINEAIELAKAFGAEDSHKFVNGVL 145
>gi|374373692|ref|ZP_09631352.1| NusB antitermination factor [Niabella soli DSM 19437]
gi|373234665|gb|EHP54458.1| NusB antitermination factor [Niabella soli DSM 19437]
Length = 298
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L+F ++LL V+DK + ++++ + P + K W ++ A +L++ I+ + ++E T
Sbjct: 194 LQFAQQLLATVIDK---NEYLLEFITPRL-KNWDPERIA--LLDMVIMKMGVAEFLYFET 247
Query: 252 RH-QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ INE +DLAK + + +NG L + L
Sbjct: 248 IPPKVTINEYIDLAKEYSTAQSGHFVNGILDNIHKEL 284
>gi|392428159|ref|YP_006469170.1| nitrogen utilization substance protein NusB [Streptococcus
intermedius JTH08]
gi|391757305|dbj|BAM22922.1| nitrogen utilization substance protein NusB [Streptococcus
intermedius JTH08]
Length = 146
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 231 GRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
GR+ +E +IL L + E+T T + +NEA++L+K F + + + ING L F+
Sbjct: 89 GRLTLVEKNILRLGLFEMTEFDTPQLVALNEAIELSKNFSNEKSSKFINGILSKFI 144
>gi|366085786|ref|ZP_09452271.1| transcription antitermination protein NusB [Lactobacillus zeae KCTC
3804]
Length = 135
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 186 VYSKLLLRFTR--KLLVAVVDKWDAHVHIIDKVVPPI----WKVWKMDQPAGRILELSIL 239
VY+++L + T L +V+ H +D + P W + ++ +P IL L +
Sbjct: 29 VYAEVLPKDTEVPPYLSELVEGVLTHQEALDAALTPQLKKGWTLSRLTKPDLMILRLGLY 88
Query: 240 HLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+ E INEA++LAKR+ D + + +NG L F+
Sbjct: 89 EIRYEE----AMPEAAAINEAINLAKRYSDDQSAKFVNGILANFI 129
>gi|375085444|ref|ZP_09732083.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
gi|374567314|gb|EHR38537.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
Length = 442
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVG 250
RF +L+ V D + I+ K V ++P +I ++IL L + +I +
Sbjct: 40 RFITELVYGTVKAGDTLLWILKKFV---------NRPLNKIEPTIINILRLGIYQIVFMD 90
Query: 251 -TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASK 300
NEAV+LAK++ + + + +NG LR +R E A +KAS+
Sbjct: 91 KIPESAACNEAVNLAKKYSNQGSAKFVNGVLRNLIRQPEKYAMPTGNKASE 141
>gi|156743196|ref|YP_001433325.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941]
gi|189035899|sp|A7NP12.1|NUSB_ROSCS RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|156234524|gb|ABU59307.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941]
Length = 142
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV---V 249
RF R+L V W+ H+ D+++ W + Q G ++ +IL +A+ E +
Sbjct: 45 RFLRRL---VFGAWEHAAHL-DRIIEEAAPNWPVSQMPG--VDKAILRIALFEALIDKEE 98
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
T + +INEAV+LAK++ + R +NG L T V
Sbjct: 99 KTPLKAIINEAVELAKQYGSDNSSRFVNGVLGTVV 133
>gi|51244954|ref|YP_064838.1| transcription termination factor (NusB) [Desulfotalea psychrophila
LSv54]
gi|81642559|sp|Q6AP93.1|NUSB_DESPS RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|50875991|emb|CAG35831.1| probable transcription termination factor (NusB) [Desulfotalea
psychrophila LSv54]
Length = 141
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKR 266
A ID+++ W+M + + + ++L +A EI ++ INEAV++AKR
Sbjct: 61 ADQEAIDRLIEEAAVNWRMSRISA--TDRNLLRVATFEINFCDDVPAEVAINEAVEIAKR 118
Query: 267 FCDGAAPRIINGCL 280
FC +P+ +NG L
Sbjct: 119 FCGDESPKFVNGVL 132
>gi|418576097|ref|ZP_13140243.1| transcription antitermination protein NusB [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325159|gb|EHY92291.1| transcription antitermination protein NusB [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 110
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 190 LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELS--ILHLAMSEIT 247
L F L+ V D H ++D+ + P K W + R+L+ IL ++ E+
Sbjct: 22 LEFEFISWLVTGVKD----HEVVLDEKIQPHLKDWTL----ARLLKSDRIILRMSTFEML 73
Query: 248 VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
T +++INEAV+LAK+F D + ING L
Sbjct: 74 HSSTPQKVIINEAVELAKQFSDDDHYKFINGVL 106
>gi|256827876|ref|YP_003156604.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
gi|256577052|gb|ACU88188.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
Length = 154
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIV 256
L+ V D +D+ ID+++ + WK+++ A +EL+IL L++ E+ ++
Sbjct: 55 LVEGVFDNYDS----IDEIITQHSQHWKLNRIAK--VELTILRLSLFEMLFCPDIPIKVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCL 280
+NEA++LAK F D + +NG L
Sbjct: 109 MNEAIELAKDFGDDNSKTFVNGVL 132
>gi|57242527|ref|ZP_00370465.1| transcription antitermination factor NusB [Campylobacter
upsaliensis RM3195]
gi|57016812|gb|EAL53595.1| transcription antitermination factor NusB [Campylobacter
upsaliensis RM3195]
Length = 132
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
FT L V++ H+ +D+ + K+ Q G I E +IL L E+ T
Sbjct: 44 FTLSLYNGVLE----HLQSLDECIDVFLNENKIHQ-IGHI-ERAILRLGAFELLHTDTLA 97
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
IVINEAV+L K + AP++ING L
Sbjct: 98 AIVINEAVELTKEMANENAPKLINGVL 124
>gi|69244729|ref|ZP_00602993.1| Antitermination protein NusB [Enterococcus faecium DO]
gi|227550442|ref|ZP_03980491.1| transcription antitermination protein NusB [Enterococcus faecium
TX1330]
gi|257879351|ref|ZP_05659004.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
gi|257881783|ref|ZP_05661436.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
gi|257888470|ref|ZP_05668123.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
gi|257890177|ref|ZP_05669830.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
gi|257897155|ref|ZP_05676808.1| antitermination protein NusB [Enterococcus faecium Com12]
gi|257899153|ref|ZP_05678806.1| antitermination protein NusB [Enterococcus faecium Com15]
gi|260558793|ref|ZP_05830982.1| antitermination protein NusB [Enterococcus faecium C68]
gi|261206503|ref|ZP_05921203.1| antitermination protein NusB [Enterococcus faecium TC 6]
gi|289565413|ref|ZP_06445862.1| transcription antitermination factor NusB [Enterococcus faecium
D344SRF]
gi|293377380|ref|ZP_06623584.1| transcription antitermination factor NusB [Enterococcus faecium
PC4.1]
gi|293553169|ref|ZP_06673806.1| transcription antitermination factor NusB [Enterococcus faecium
E1039]
gi|293560490|ref|ZP_06676982.1| transcription antitermination factor NusB [Enterococcus faecium
E1162]
gi|293568316|ref|ZP_06679640.1| transcription antitermination factor NusB [Enterococcus faecium
E1071]
gi|293571749|ref|ZP_06682768.1| transcription antitermination factor NusB [Enterococcus faecium
E980]
gi|294614729|ref|ZP_06694631.1| transcription antitermination factor NusB [Enterococcus faecium
E1636]
gi|294618975|ref|ZP_06698470.1| transcription antitermination factor NusB [Enterococcus faecium
E1679]
gi|294621587|ref|ZP_06700752.1| transcription antitermination factor NusB [Enterococcus faecium
U0317]
gi|314937887|ref|ZP_07845203.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133a04]
gi|314941378|ref|ZP_07848271.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133C]
gi|314950137|ref|ZP_07853423.1| transcription antitermination factor NusB [Enterococcus faecium
TX0082]
gi|314951322|ref|ZP_07854376.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133A]
gi|314992847|ref|ZP_07858248.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133B]
gi|314998051|ref|ZP_07862939.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133a01]
gi|383328070|ref|YP_005353954.1| transcription antitermination factor NusB [Enterococcus faecium
Aus0004]
gi|389867960|ref|YP_006375383.1| N utilization substance B [Enterococcus faecium DO]
gi|406580450|ref|ZP_11055643.1| transcription antitermination protein NusB [Enterococcus sp. GMD4E]
gi|406582715|ref|ZP_11057813.1| transcription antitermination protein NusB [Enterococcus sp. GMD3E]
gi|406584942|ref|ZP_11059938.1| transcription antitermination protein NusB [Enterococcus sp. GMD2E]
gi|406590325|ref|ZP_11064694.1| transcription antitermination protein NusB [Enterococcus sp. GMD1E]
gi|410937002|ref|ZP_11368864.1| transcription antitermination protein NusB [Enterococcus sp. GMD5E]
gi|415898417|ref|ZP_11551302.1| transcription antitermination factor NusB [Enterococcus faecium
E4453]
gi|416130952|ref|ZP_11597615.1| transcription antitermination factor NusB [Enterococcus faecium
E4452]
gi|424763032|ref|ZP_18190511.1| transcription antitermination factor NusB [Enterococcus faecium
TX1337RF]
gi|424809994|ref|ZP_18235362.1| transcription antitermination factor NusB [Enterococcus faecium
S447]
gi|424826018|ref|ZP_18250959.1| transcription antitermination factor NusB [Enterococcus faecium
R501]
gi|424859433|ref|ZP_18283441.1| transcription antitermination factor NusB [Enterococcus faecium
R499]
gi|424901177|ref|ZP_18324714.1| transcription antitermination factor NusB [Enterococcus faecium
R497]
gi|424951704|ref|ZP_18366772.1| transcription antitermination factor NusB [Enterococcus faecium
R496]
gi|424958638|ref|ZP_18373274.1| transcription antitermination factor NusB [Enterococcus faecium
R446]
gi|424959577|ref|ZP_18374155.1| transcription antitermination factor NusB [Enterococcus faecium
P1986]
gi|424964086|ref|ZP_18378227.1| transcription antitermination factor NusB [Enterococcus faecium
P1190]
gi|424969193|ref|ZP_18382776.1| transcription antitermination factor NusB [Enterococcus faecium
P1140]
gi|424971963|ref|ZP_18385360.1| transcription antitermination factor NusB [Enterococcus faecium
P1139]
gi|424973307|ref|ZP_18386595.1| transcription antitermination factor NusB [Enterococcus faecium
P1137]
gi|424977755|ref|ZP_18390740.1| transcription antitermination factor NusB [Enterococcus faecium
P1123]
gi|424982058|ref|ZP_18394741.1| transcription antitermination factor NusB [Enterococcus faecium
ERV99]
gi|424985839|ref|ZP_18398299.1| transcription antitermination factor NusB [Enterococcus faecium
ERV69]
gi|424988402|ref|ZP_18400724.1| transcription antitermination factor NusB [Enterococcus faecium
ERV38]
gi|424990605|ref|ZP_18402811.1| transcription antitermination factor NusB [Enterococcus faecium
ERV26]
gi|424994749|ref|ZP_18406675.1| transcription antitermination factor NusB [Enterococcus faecium
ERV168]
gi|424998843|ref|ZP_18410506.1| transcription antitermination factor NusB [Enterococcus faecium
ERV165]
gi|425001822|ref|ZP_18413307.1| transcription antitermination factor NusB [Enterococcus faecium
ERV161]
gi|425009739|ref|ZP_18420733.1| transcription antitermination factor NusB [Enterococcus faecium
E422]
gi|425023852|ref|ZP_18433947.1| transcription antitermination factor NusB [Enterococcus faecium
C1904]
gi|425031152|ref|ZP_18436295.1| transcription antitermination factor NusB [Enterococcus faecium
515]
gi|425036604|ref|ZP_18441346.1| transcription antitermination factor NusB [Enterococcus faecium
514]
gi|425043108|ref|ZP_18447377.1| transcription antitermination factor NusB [Enterococcus faecium
511]
gi|425045124|ref|ZP_18449243.1| transcription antitermination factor NusB [Enterococcus faecium
510]
gi|425048690|ref|ZP_18452581.1| transcription antitermination factor NusB [Enterococcus faecium
509]
gi|425052459|ref|ZP_18456064.1| transcription antitermination factor NusB [Enterococcus faecium
506]
gi|425056600|ref|ZP_18460051.1| transcription antitermination factor NusB [Enterococcus faecium
505]
gi|425058719|ref|ZP_18462095.1| transcription antitermination factor NusB [Enterococcus faecium
504]
gi|425061088|ref|ZP_18464353.1| transcription antitermination factor NusB [Enterococcus faecium
503]
gi|427395429|ref|ZP_18888351.1| transcription antitermination factor NusB [Enterococcus durans
FB129-CNAB-4]
gi|430821357|ref|ZP_19439968.1| transcription antitermination factor NusB [Enterococcus faecium
E0045]
gi|430824046|ref|ZP_19442613.1| transcription antitermination factor NusB [Enterococcus faecium
E0120]
gi|430826904|ref|ZP_19445072.1| transcription antitermination factor NusB [Enterococcus faecium
E0164]
gi|430829528|ref|ZP_19447621.1| transcription antitermination factor NusB [Enterococcus faecium
E0269]
gi|430831517|ref|ZP_19449568.1| transcription antitermination factor NusB [Enterococcus faecium
E0333]
gi|430833744|ref|ZP_19451755.1| transcription antitermination factor NusB [Enterococcus faecium
E0679]
gi|430837054|ref|ZP_19455030.1| transcription antitermination factor NusB [Enterococcus faecium
E0680]
gi|430839132|ref|ZP_19457074.1| transcription antitermination factor NusB [Enterococcus faecium
E0688]
gi|430844796|ref|ZP_19462693.1| transcription antitermination factor NusB [Enterococcus faecium
E1050]
gi|430846868|ref|ZP_19464722.1| transcription antitermination factor NusB [Enterococcus faecium
E1133]
gi|430851064|ref|ZP_19468820.1| transcription antitermination factor NusB [Enterococcus faecium
E1185]
gi|430853502|ref|ZP_19471230.1| transcription antitermination factor NusB [Enterococcus faecium
E1258]
gi|430856755|ref|ZP_19474439.1| transcription antitermination factor NusB [Enterococcus faecium
E1392]
gi|430859657|ref|ZP_19477266.1| transcription antitermination factor NusB [Enterococcus faecium
E1552]
gi|430862409|ref|ZP_19479726.1| transcription antitermination factor NusB [Enterococcus faecium
E1573]
gi|430867359|ref|ZP_19482353.1| transcription antitermination factor NusB [Enterococcus faecium
E1574]
gi|430869903|ref|ZP_19483058.1| transcription antitermination factor NusB [Enterococcus faecium
E1575]
gi|430963195|ref|ZP_19487487.1| transcription antitermination factor NusB [Enterococcus faecium
E1576]
gi|431011113|ref|ZP_19489857.1| transcription antitermination factor NusB [Enterococcus faecium
E1578]
gi|431031555|ref|ZP_19490729.1| transcription antitermination factor NusB [Enterococcus faecium
E1590]
gi|431066264|ref|ZP_19493887.1| transcription antitermination factor NusB [Enterococcus faecium
E1604]
gi|431099308|ref|ZP_19496474.1| transcription antitermination factor NusB [Enterococcus faecium
E1613]
gi|431185967|ref|ZP_19500030.1| transcription antitermination factor NusB [Enterococcus faecium
E1620]
gi|431237106|ref|ZP_19503249.1| transcription antitermination factor NusB [Enterococcus faecium
E1622]
gi|431264041|ref|ZP_19505929.1| transcription antitermination factor NusB [Enterococcus faecium
E1623]
gi|431290517|ref|ZP_19506652.1| transcription antitermination factor NusB [Enterococcus faecium
E1626]
gi|431382785|ref|ZP_19511378.1| transcription antitermination factor NusB [Enterococcus faecium
E1627]
gi|431446000|ref|ZP_19513682.1| transcription antitermination factor NusB [Enterococcus faecium
E1630]
gi|431523785|ref|ZP_19516810.1| transcription antitermination factor NusB [Enterococcus faecium
E1634]
gi|431536426|ref|ZP_19517386.1| transcription antitermination factor NusB [Enterococcus faecium
E1731]
gi|431677779|ref|ZP_19524377.1| transcription antitermination factor NusB [Enterococcus faecium
E1904]
gi|431738305|ref|ZP_19527250.1| transcription antitermination factor NusB [Enterococcus faecium
E1972]
gi|431741906|ref|ZP_19530806.1| transcription antitermination factor NusB [Enterococcus faecium
E2039]
gi|431743218|ref|ZP_19532098.1| transcription antitermination factor NusB [Enterococcus faecium
E2071]
gi|431745456|ref|ZP_19534300.1| transcription antitermination factor NusB [Enterococcus faecium
E2134]
gi|431747896|ref|ZP_19536660.1| transcription antitermination factor NusB [Enterococcus faecium
E2297]
gi|431751263|ref|ZP_19539954.1| transcription antitermination factor NusB [Enterococcus faecium
E2620]
gi|431754077|ref|ZP_19542742.1| transcription antitermination factor NusB [Enterococcus faecium
E2883]
gi|431758391|ref|ZP_19547018.1| transcription antitermination factor NusB [Enterococcus faecium
E3083]
gi|431760561|ref|ZP_19549158.1| transcription antitermination factor NusB [Enterococcus faecium
E3346]
gi|431763864|ref|ZP_19552412.1| transcription antitermination factor NusB [Enterococcus faecium
E3548]
gi|431765968|ref|ZP_19554467.1| transcription antitermination factor NusB [Enterococcus faecium
E4215]
gi|431768763|ref|ZP_19557196.1| transcription antitermination factor NusB [Enterococcus faecium
E1321]
gi|431770055|ref|ZP_19558458.1| transcription antitermination factor NusB [Enterococcus faecium
E1644]
gi|431774417|ref|ZP_19562725.1| transcription antitermination factor NusB [Enterococcus faecium
E2369]
gi|431777028|ref|ZP_19565285.1| transcription antitermination factor NusB [Enterococcus faecium
E2560]
gi|431779294|ref|ZP_19567489.1| transcription antitermination factor NusB [Enterococcus faecium
E4389]
gi|431781335|ref|ZP_19569483.1| transcription antitermination factor NusB [Enterococcus faecium
E6012]
gi|431784966|ref|ZP_19573001.1| transcription antitermination factor NusB [Enterococcus faecium
E6045]
gi|447913376|ref|YP_007394788.1| Transcription termination protein NusB [Enterococcus faecium NRRL
B-2354]
gi|68196320|gb|EAN10749.1| Antitermination protein NusB [Enterococcus faecium DO]
gi|227180343|gb|EEI61315.1| transcription antitermination protein NusB [Enterococcus faecium
TX1330]
gi|257813579|gb|EEV42337.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
gi|257817441|gb|EEV44769.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
gi|257824524|gb|EEV51456.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
gi|257826537|gb|EEV53163.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
gi|257833720|gb|EEV60141.1| antitermination protein NusB [Enterococcus faecium Com12]
gi|257837065|gb|EEV62139.1| antitermination protein NusB [Enterococcus faecium Com15]
gi|260075252|gb|EEW63565.1| antitermination protein NusB [Enterococcus faecium C68]
gi|260079213|gb|EEW66904.1| antitermination protein NusB [Enterococcus faecium TC 6]
gi|289162742|gb|EFD10593.1| transcription antitermination factor NusB [Enterococcus faecium
D344SRF]
gi|291589028|gb|EFF20852.1| transcription antitermination factor NusB [Enterococcus faecium
E1071]
gi|291592467|gb|EFF24074.1| transcription antitermination factor NusB [Enterococcus faecium
E1636]
gi|291594636|gb|EFF26018.1| transcription antitermination factor NusB [Enterococcus faecium
E1679]
gi|291598752|gb|EFF29804.1| transcription antitermination factor NusB [Enterococcus faecium
U0317]
gi|291602579|gb|EFF32794.1| transcription antitermination factor NusB [Enterococcus faecium
E1039]
gi|291605638|gb|EFF35080.1| transcription antitermination factor NusB [Enterococcus faecium
E1162]
gi|291608206|gb|EFF37509.1| transcription antitermination factor NusB [Enterococcus faecium
E980]
gi|292644072|gb|EFF62178.1| transcription antitermination factor NusB [Enterococcus faecium
PC4.1]
gi|313587893|gb|EFR66738.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133a01]
gi|313592651|gb|EFR71496.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133B]
gi|313596539|gb|EFR75384.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133A]
gi|313599801|gb|EFR78644.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133C]
gi|313642745|gb|EFS07325.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133a04]
gi|313643578|gb|EFS08158.1| transcription antitermination factor NusB [Enterococcus faecium
TX0082]
gi|364090085|gb|EHM32716.1| transcription antitermination factor NusB [Enterococcus faecium
E4453]
gi|364093827|gb|EHM36063.1| transcription antitermination factor NusB [Enterococcus faecium
E4452]
gi|378937764|gb|AFC62836.1| transcription antitermination factor NusB [Enterococcus faecium
Aus0004]
gi|388533209|gb|AFK58401.1| N utilization substance B [Enterococcus faecium DO]
gi|402423499|gb|EJV55712.1| transcription antitermination factor NusB [Enterococcus faecium
TX1337RF]
gi|402918227|gb|EJX38941.1| transcription antitermination factor NusB [Enterococcus faecium
S447]
gi|402924687|gb|EJX44879.1| transcription antitermination factor NusB [Enterococcus faecium
R501]
gi|402926465|gb|EJX46501.1| transcription antitermination factor NusB [Enterococcus faecium
R499]
gi|402928925|gb|EJX48731.1| transcription antitermination factor NusB [Enterococcus faecium
R496]
gi|402931346|gb|EJX50932.1| transcription antitermination factor NusB [Enterococcus faecium
R497]
gi|402939535|gb|EJX58440.1| transcription antitermination factor NusB [Enterococcus faecium
R446]
gi|402947500|gb|EJX65708.1| transcription antitermination factor NusB [Enterococcus faecium
P1190]
gi|402949149|gb|EJX67230.1| transcription antitermination factor NusB [Enterococcus faecium
P1140]
gi|402950091|gb|EJX68106.1| transcription antitermination factor NusB [Enterococcus faecium
P1986]
gi|402956902|gb|EJX74325.1| transcription antitermination factor NusB [Enterococcus faecium
P1139]
gi|402958943|gb|EJX76224.1| transcription antitermination factor NusB [Enterococcus faecium
P1137]
gi|402961814|gb|EJX78809.1| transcription antitermination factor NusB [Enterococcus faecium
ERV99]
gi|402964497|gb|EJX81271.1| transcription antitermination factor NusB [Enterococcus faecium
P1123]
gi|402965090|gb|EJX81828.1| transcription antitermination factor NusB [Enterococcus faecium
ERV69]
gi|402972101|gb|EJX88326.1| transcription antitermination factor NusB [Enterococcus faecium
ERV38]
gi|402979093|gb|EJX94780.1| transcription antitermination factor NusB [Enterococcus faecium
ERV26]
gi|402979199|gb|EJX94879.1| transcription antitermination factor NusB [Enterococcus faecium
ERV168]
gi|402981880|gb|EJX97387.1| transcription antitermination factor NusB [Enterococcus faecium
ERV165]
gi|402985306|gb|EJY00526.1| transcription antitermination factor NusB [Enterococcus faecium
ERV161]
gi|403001993|gb|EJY16006.1| transcription antitermination factor NusB [Enterococcus faecium
E422]
gi|403008460|gb|EJY21964.1| transcription antitermination factor NusB [Enterococcus faecium
C1904]
gi|403014145|gb|EJY27163.1| transcription antitermination factor NusB [Enterococcus faecium
514]
gi|403016321|gb|EJY29145.1| transcription antitermination factor NusB [Enterococcus faecium
515]
gi|403021347|gb|EJY33814.1| transcription antitermination factor NusB [Enterococcus faecium
511]
gi|403027862|gb|EJY39718.1| transcription antitermination factor NusB [Enterococcus faecium
510]
gi|403030005|gb|EJY41725.1| transcription antitermination factor NusB [Enterococcus faecium
509]
gi|403031630|gb|EJY43230.1| transcription antitermination factor NusB [Enterococcus faecium
505]
gi|403034251|gb|EJY45714.1| transcription antitermination factor NusB [Enterococcus faecium
506]
gi|403037574|gb|EJY48839.1| transcription antitermination factor NusB [Enterococcus faecium
504]
gi|403042025|gb|EJY53001.1| transcription antitermination factor NusB [Enterococcus faecium
503]
gi|404453827|gb|EKA00859.1| transcription antitermination protein NusB [Enterococcus sp. GMD4E]
gi|404457705|gb|EKA04235.1| transcription antitermination protein NusB [Enterococcus sp. GMD3E]
gi|404463161|gb|EKA08857.1| transcription antitermination protein NusB [Enterococcus sp. GMD2E]
gi|404469394|gb|EKA14200.1| transcription antitermination protein NusB [Enterococcus sp. GMD1E]
gi|410734595|gb|EKQ76514.1| transcription antitermination protein NusB [Enterococcus sp. GMD5E]
gi|425723929|gb|EKU86815.1| transcription antitermination factor NusB [Enterococcus durans
FB129-CNAB-4]
gi|430438620|gb|ELA49037.1| transcription antitermination factor NusB [Enterococcus faecium
E0045]
gi|430441430|gb|ELA51527.1| transcription antitermination factor NusB [Enterococcus faecium
E0120]
gi|430444450|gb|ELA54288.1| transcription antitermination factor NusB [Enterococcus faecium
E0164]
gi|430480967|gb|ELA58138.1| transcription antitermination factor NusB [Enterococcus faecium
E0269]
gi|430481400|gb|ELA58556.1| transcription antitermination factor NusB [Enterococcus faecium
E0333]
gi|430486149|gb|ELA63017.1| transcription antitermination factor NusB [Enterococcus faecium
E0679]
gi|430487835|gb|ELA64543.1| transcription antitermination factor NusB [Enterococcus faecium
E0680]
gi|430491129|gb|ELA67611.1| transcription antitermination factor NusB [Enterococcus faecium
E0688]
gi|430496227|gb|ELA72332.1| transcription antitermination factor NusB [Enterococcus faecium
E1050]
gi|430534821|gb|ELA75256.1| transcription antitermination factor NusB [Enterococcus faecium
E1185]
gi|430538422|gb|ELA78714.1| transcription antitermination factor NusB [Enterococcus faecium
E1133]
gi|430540583|gb|ELA80785.1| transcription antitermination factor NusB [Enterococcus faecium
E1258]
gi|430543194|gb|ELA83269.1| transcription antitermination factor NusB [Enterococcus faecium
E1552]
gi|430543868|gb|ELA83920.1| transcription antitermination factor NusB [Enterococcus faecium
E1392]
gi|430548987|gb|ELA88834.1| transcription antitermination factor NusB [Enterococcus faecium
E1573]
gi|430550370|gb|ELA90166.1| transcription antitermination factor NusB [Enterococcus faecium
E1574]
gi|430555620|gb|ELA95157.1| transcription antitermination factor NusB [Enterococcus faecium
E1576]
gi|430559280|gb|ELA98639.1| transcription antitermination factor NusB [Enterococcus faecium
E1575]
gi|430560135|gb|ELA99441.1| transcription antitermination factor NusB [Enterococcus faecium
E1578]
gi|430564965|gb|ELB04140.1| transcription antitermination factor NusB [Enterococcus faecium
E1590]
gi|430568303|gb|ELB07351.1| transcription antitermination factor NusB [Enterococcus faecium
E1604]
gi|430570809|gb|ELB09748.1| transcription antitermination factor NusB [Enterococcus faecium
E1613]
gi|430572670|gb|ELB11520.1| transcription antitermination factor NusB [Enterococcus faecium
E1622]
gi|430572952|gb|ELB11787.1| transcription antitermination factor NusB [Enterococcus faecium
E1620]
gi|430576477|gb|ELB15128.1| transcription antitermination factor NusB [Enterococcus faecium
E1623]
gi|430581156|gb|ELB19603.1| transcription antitermination factor NusB [Enterococcus faecium
E1627]
gi|430582617|gb|ELB21039.1| transcription antitermination factor NusB [Enterococcus faecium
E1626]
gi|430584743|gb|ELB23057.1| transcription antitermination factor NusB [Enterococcus faecium
E1634]
gi|430585644|gb|ELB23916.1| transcription antitermination factor NusB [Enterococcus faecium
E1630]
gi|430594913|gb|ELB32865.1| transcription antitermination factor NusB [Enterococcus faecium
E1731]
gi|430597743|gb|ELB35526.1| transcription antitermination factor NusB [Enterococcus faecium
E1972]
gi|430599272|gb|ELB36983.1| transcription antitermination factor NusB [Enterococcus faecium
E1904]
gi|430601059|gb|ELB38681.1| transcription antitermination factor NusB [Enterococcus faecium
E2039]
gi|430607052|gb|ELB44380.1| transcription antitermination factor NusB [Enterococcus faecium
E2071]
gi|430610212|gb|ELB47364.1| transcription antitermination factor NusB [Enterococcus faecium
E2134]
gi|430614772|gb|ELB51743.1| transcription antitermination factor NusB [Enterococcus faecium
E2297]
gi|430615703|gb|ELB52646.1| transcription antitermination factor NusB [Enterococcus faecium
E2620]
gi|430617449|gb|ELB54322.1| transcription antitermination factor NusB [Enterococcus faecium
E3083]
gi|430620000|gb|ELB56803.1| transcription antitermination factor NusB [Enterococcus faecium
E2883]
gi|430621688|gb|ELB58440.1| transcription antitermination factor NusB [Enterococcus faecium
E3548]
gi|430623646|gb|ELB60324.1| transcription antitermination factor NusB [Enterococcus faecium
E3346]
gi|430627411|gb|ELB63913.1| transcription antitermination factor NusB [Enterococcus faecium
E4215]
gi|430628631|gb|ELB65065.1| transcription antitermination factor NusB [Enterococcus faecium
E1321]
gi|430634166|gb|ELB70301.1| transcription antitermination factor NusB [Enterococcus faecium
E2369]
gi|430635808|gb|ELB71887.1| transcription antitermination factor NusB [Enterococcus faecium
E1644]
gi|430639969|gb|ELB75823.1| transcription antitermination factor NusB [Enterococcus faecium
E2560]
gi|430642149|gb|ELB77930.1| transcription antitermination factor NusB [Enterococcus faecium
E4389]
gi|430648522|gb|ELB83928.1| transcription antitermination factor NusB [Enterococcus faecium
E6045]
gi|430649696|gb|ELB85064.1| transcription antitermination factor NusB [Enterococcus faecium
E6012]
gi|445189085|gb|AGE30727.1| Transcription termination protein NusB [Enterococcus faecium NRRL
B-2354]
Length = 149
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-VVGTR 252
+ L+ V K D +I+K + W + ++ + ++L IL +A+ E+T V
Sbjct: 56 YLDTLVGGVCAKKDELDKVIEKHLKNNWHINRISK-----MDLVILRIAIFEMTYVTDVP 110
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+ +NEA++LAK F D + + +NG L ++ LE A
Sbjct: 111 AAVALNEAIELAKTFSDDRSRKFVNGVLSNVLKELEAGA 149
>gi|94984805|ref|YP_604169.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300]
gi|119390766|sp|Q1J0I4.1|NUSB_DEIGD RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|94555086|gb|ABF45000.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300]
Length = 169
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F R+L VD +D + + W +Q A +L++L LA E+
Sbjct: 62 LAFARQL----VDGLGERRADVDAALRRTIRGWDFEQMA--QTDLNVLRLATYEMLYTPE 115
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSE 305
H VI AV +A++F + R +NG L R+L+ + + +++ P E
Sbjct: 116 PHPPVIESAVRIARKFGGEDSGRFVNGVLGGLSRSLKTAPRLPQNTGAEDGPQE 169
>gi|429741050|ref|ZP_19274719.1| transcription antitermination factor NusB [Porphyromonas catoniae
F0037]
gi|429159719|gb|EKY02216.1| transcription antitermination factor NusB [Porphyromonas catoniae
F0037]
Length = 351
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 11/156 (7%)
Query: 139 SLLEYNHMSFGGPPVTTETVEE-ADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRK 197
S+ +Y SF PV E V++ ++ LR E I+ ++L + + F R
Sbjct: 203 SMGQYQSTSFANGPV--EVVKDFVEKTLRKAVESQPIDEQILP----MFREEDDETFARH 256
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVI 257
LL V+ K D ++ +I+ V+ W ++ +L L + + G I I
Sbjct: 257 LLRQVLVKHDEYLKLIEPVLTEGWSSERLADMDALLLRLGVTEF----LHFPGIPTHITI 312
Query: 258 NEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANI 293
NE V+LAK F + +NG L + L I
Sbjct: 313 NEYVELAKHFSTAHSASFVNGILDAMAKKLREEGKI 348
>gi|225018827|ref|ZP_03708019.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
DSM 5476]
gi|224948387|gb|EEG29596.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
DSM 5476]
Length = 132
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 199 LVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVI 257
++A+ H+ +D+++ W + + + IL +IL LA+ EI V I I
Sbjct: 43 VIALFTGVQQHISELDRLISEHLTKWNITRLSKVIL--AILRLAVYEIVYVERVEAPIAI 100
Query: 258 NEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
NEAV+LAK + +NG L +FVR E
Sbjct: 101 NEAVELAKEYATQEDAAFVNGVLGSFVRAAE 131
>gi|421768819|ref|ZP_16205529.1| Transcription termination protein NusB [Lactobacillus rhamnosus
LRHMDP2]
gi|421771029|ref|ZP_16207690.1| Transcription termination protein NusB [Lactobacillus rhamnosus
LRHMDP3]
gi|411185668|gb|EKS52795.1| Transcription termination protein NusB [Lactobacillus rhamnosus
LRHMDP2]
gi|411186464|gb|EKS53588.1| Transcription termination protein NusB [Lactobacillus rhamnosus
LRHMDP3]
Length = 135
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 186 VYSKLLLRFTR--KLLVAVVDKWDAHVHIIDKVVPPI----WKVWKMDQPAGRILELSIL 239
VY+++L + T L A+V+ A+ +D + P W + ++ +P +L IL
Sbjct: 29 VYAEVLPKDTEVPSYLTALVEGVLANQAALDAALMPQLKKGWTLSRLTKP-----DLIIL 83
Query: 240 HLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
L + EI INEA++LAKR+ D + + +NG L F+
Sbjct: 84 RLGLYEIRYEEAMPEAAAINEAINLAKRYSDEQSAKFVNGILANFI 129
>gi|113954607|ref|YP_729249.1| transcription antitermination protein NusB [Synechococcus sp.
CC9311]
gi|113881958|gb|ABI46916.1| putative transcription antitermination factor NusB [Synechococcus
sp. CC9311]
Length = 210
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ + + W++ + RI + IL LA+ +++ + T + NEAV+LA RF D
Sbjct: 133 IDQMLDGVMEGWRLTR-LPRI-DRDILRLAVIDLSELKTPAAVACNEAVELAHRFSDEQG 190
Query: 273 PRIINGCLRTF 283
++ING LR
Sbjct: 191 RKMINGVLRRL 201
>gi|296333411|ref|ZP_06875864.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305675083|ref|YP_003866755.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296149609|gb|EFG90505.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305413327|gb|ADM38446.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 131
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 269
+D+++ WK+D+ A IL L+ +A +E V + +NEA++LAKRF D
Sbjct: 55 LDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVN----VSMNEAIELAKRFGD 110
Query: 270 GAAPRIINGCLRTFVRNLEGT 290
A + +NG L ++E +
Sbjct: 111 DKATKFVNGVLSNIKSDIEQS 131
>gi|452076960|gb|AGF92933.1| NusB antitermination factor [uncultured organism]
gi|452077353|gb|AGF93315.1| NusB antitermination factor [uncultured organism]
Length = 140
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDGA 271
ID+++ WK+ + A L+ +IL +A+ E+ T ++V+NEA++LAK +
Sbjct: 57 IDELISEFTVGWKVGRLA--FLDRNILRMAIYEMLYYQETPAEVVMNEAIELAKEYGTEN 114
Query: 272 APRIINGCL 280
AP+ +NG L
Sbjct: 115 APKFVNGIL 123
>gi|405983755|ref|ZP_11042060.1| transcription antitermination factor NusB [Slackia piriformis YIT
12062]
gi|404388570|gb|EJZ83652.1| transcription antitermination factor NusB [Slackia piriformis YIT
12062]
Length = 211
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 175 EAEVLSAPPKLVYSKLLL-------RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMD 227
++E+L P +V + L+ + R L+ V +H +D+ + + W +D
Sbjct: 19 QSELLDKPADIVVEEGLVPEDAGMGDYARMLIFGVA----SHSAELDRTISMCSRNWAID 74
Query: 228 QPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRF-CDGAAPRIINGCLRTFVR 285
+ +++ +L LA+ E+ V + INEAV+LAK F + + R +NG L R
Sbjct: 75 RMP--VVDRCLLRLAVFELKYVEDVPVSVSINEAVELAKEFGGEDDSHRFVNGVLGRLAR 132
Query: 286 NLEGTANIEASKASK 300
L+G + + +K
Sbjct: 133 KLDGEDQQDCEEEAK 147
>gi|291562672|emb|CBL41488.1| transcription antitermination factor NusB [butyrate-producing
bacterium SS3/4]
Length = 139
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
ID+ + I + W+ + G++ EL+IL LA+ E+ ++ INEAV+LAK+F
Sbjct: 65 IDEKINEIAEGWRT-RRMGKV-ELTILRLAVFEMKYDEEIPEKVAINEAVELAKKFGGDE 122
Query: 272 APRIINGCLRTFVR 285
AP +NG L ++
Sbjct: 123 APAFVNGILAKLIQ 136
>gi|407070641|ref|ZP_11101479.1| transcription antitermination protein NusB [Vibrio cyclitrophicus
ZF14]
Length = 151
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E + +E S DEEE +A P L + + + R LL V +
Sbjct: 22 ITKENIATVEEQFLSGGKYDEEEHH------AAEPALAMPETDVAYFRDLLTGVAL---S 72
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H+ + K+ P + + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 73 HMELDSKLRPFVSRPMQDLD-----LMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 127
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 128 FAAEDSHKFVNGVL 141
>gi|84394359|ref|ZP_00993080.1| transcription antitermination protein NusB [Vibrio splendidus
12B01]
gi|86147433|ref|ZP_01065745.1| transcription antitermination protein NusB [Vibrio sp. MED222]
gi|148976613|ref|ZP_01813300.1| transcription antitermination protein NusB [Vibrionales bacterium
SWAT-3]
gi|218710372|ref|YP_002417993.1| transcription antitermination protein NusB [Vibrio splendidus
LGP32]
gi|254772666|sp|B7VJA4.1|NUSB_VIBSL RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|84375018|gb|EAP91944.1| transcription antitermination protein NusB [Vibrio splendidus
12B01]
gi|85834726|gb|EAQ52872.1| transcription antitermination protein NusB [Vibrio sp. MED222]
gi|145963964|gb|EDK29222.1| transcription antitermination protein NusB [Vibrionales bacterium
SWAT-3]
gi|218323391|emb|CAV19568.1| N utilization substance protein B homolog [Vibrio splendidus LGP32]
Length = 155
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E + +E S DEEE +A P L + + + R LL V +
Sbjct: 26 ITKENIATVEEQFLSGGKYDEEEHH------AAEPALAMPETDVAYFRDLLTGVAL---S 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H+ + K+ P + + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HMELDSKLRPFVSRPMQDLD-----LMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEDSHKFVNGVL 145
>gi|58040838|ref|YP_192802.1| NusB family protein [Gluconobacter oxydans 621H]
gi|81556897|sp|Q5FNA1.1|NUSB_GLUOX RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|58003252|gb|AAW62146.1| NusB family protein [Gluconobacter oxydans 621H]
Length = 160
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L+ +++++ V + D + V+P W + ++D P R L L A+ EI T
Sbjct: 66 LKLFQEIVLGVTRRQDDIDAKLSDVLPEQWPLPRLD-PVLRAL----LRAAVFEIGT-DT 119
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+I+INE +D+A F G P+++NG L T R
Sbjct: 120 PDRIIINEYLDVAHGFFSGDEPKMVNGILDTLSR 153
>gi|398311376|ref|ZP_10514850.1| transcription antitermination protein NusB [Bacillus mojavensis
RO-H-1]
Length = 131
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 269
+D+++ WK+D+ A IL L+ +A +E V + +NEA++LAKRF D
Sbjct: 55 LDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVN----VSMNEAIELAKRFGD 110
Query: 270 GAAPRIINGCLRTFVRNLEGT 290
A + +NG L ++E +
Sbjct: 111 DKATKFVNGVLSNIKSDIEQS 131
>gi|334341594|ref|YP_004546574.1| transcription antitermination factor NusB [Desulfotomaculum ruminis
DSM 2154]
gi|334092948|gb|AEG61288.1| transcription antitermination factor NusB [Desulfotomaculum ruminis
DSM 2154]
Length = 147
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F R+L+ ++ H+ ID+++ + K W++++ A ++ +I+ LA+ E+
Sbjct: 42 LEFARELVRGTLE----HIDEIDQMIRRVSKEWQLNRMAS--VDRNIMRLALYEMNF--- 92
Query: 252 RHQI----VINEAVDLAKRFCDGAAPRIINGCLRTFV 284
R I +NEAV+LAK F + R +NG L +
Sbjct: 93 REDIPASVSVNEAVELAKIFGGPDSGRFVNGILGKII 129
>gi|443327976|ref|ZP_21056581.1| NusB antitermination factor [Xenococcus sp. PCC 7305]
gi|442792385|gb|ELS01867.1| NusB antitermination factor [Xenococcus sp. PCC 7305]
Length = 215
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 200 VAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINE 259
+A++ + I++ + + W++ + ++ IL ++++E+ + ++ I+E
Sbjct: 121 IAIIAAVKENRQYIEQYIEEVLVAWQLSRLPK--IDQDILRISVAEMLYLELPIRVAIDE 178
Query: 260 AVDLAKRFCDGAAPRIINGCLR 281
AV+LAKR+ D R ING LR
Sbjct: 179 AVELAKRYSDDEGFRFINGVLR 200
>gi|242309730|ref|ZP_04808885.1| transcription antitermination protein NusB [Helicobacter pullorum
MIT 98-5489]
gi|239523731|gb|EEQ63597.1| transcription antitermination protein NusB [Helicobacter pullorum
MIT 98-5489]
Length = 148
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L V+ A++ +D + K W + +E +IL L + EI
Sbjct: 45 FATSLFEGVI----ANLEALDLRISHQLKDWDFSKIGD--MEKAILRLGVYEIIFNHLSK 98
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
I INEA++LAK F + + + ING L +NL+ ++
Sbjct: 99 AIAINEALELAKSFGNENSAKFINGVLDGIAKNLQDSS 136
>gi|430840703|ref|ZP_19458626.1| transcription antitermination factor NusB [Enterococcus faecium
E1007]
gi|431594929|ref|ZP_19522035.1| transcription antitermination factor NusB [Enterococcus faecium
E1861]
gi|430494909|gb|ELA71127.1| transcription antitermination factor NusB [Enterococcus faecium
E1007]
gi|430590855|gb|ELB28901.1| transcription antitermination factor NusB [Enterococcus faecium
E1861]
Length = 149
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-VVGTR 252
+ L+ V K D +I+K + W + ++ + ++L IL +A+ E+T V
Sbjct: 56 YLDTLVGGVCAKKDELDKVIEKHLKNNWHINRISK-----MDLVILRIAIFEMTYVTDVP 110
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+ +NEA++LAK F D + + +NG L ++ LE A
Sbjct: 111 AAVALNEAIELAKTFSDDRSRKFVNGVLSNVLKELEAGA 149
>gi|331084732|ref|ZP_08333820.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330410826|gb|EGG90248.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 134
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ R A+ +K V +ID+ + WK + G++ +L+IL LA+ EI
Sbjct: 46 YIRTKYAAIAEK----VEMIDEKINASVTGWKTSR-MGKV-DLTILRLAVYEIEWDEEVP 99
Query: 254 Q-IVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
Q + INEAV+LAKR+ +P ING L V
Sbjct: 100 QGVAINEAVELAKRYGGEESPSFINGVLGKIV 131
>gi|124024721|ref|YP_001013837.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. NATL1A]
gi|123959789|gb|ABM74572.1| Antitermination protein NusB [Prochlorococcus marinus str. NATL1A]
Length = 208
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAV 261
V++K D H +D V+ W++ ++ + ++ IL LA ++ T + NEAV
Sbjct: 123 VIEKQDEIDHTLDSVMEG-WRLKRLPR-----IDRDILRLAWVDLIDFNTPMAVTCNEAV 176
Query: 262 DLAKRFCDGAAPRIINGCLRTF 283
+LA R+ D R+ING LR
Sbjct: 177 NLANRYSDVQGRRMINGVLRKL 198
>gi|210615789|ref|ZP_03290770.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
gi|210150125|gb|EEA81134.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
Length = 132
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 201 AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEA 260
AVVDK + ++++ WK +M++ IL L++ + E G + INEA
Sbjct: 53 AVVDKKEEIDGLLNEYTTG-WKTSRMNRVDLTILRLAVYEMKWDEEVPTG----VAINEA 107
Query: 261 VDLAKRFCDGAAPRIINGCL 280
V+LAK++ P +NG L
Sbjct: 108 VELAKKYSSDEGPSFVNGVL 127
>gi|291287239|ref|YP_003504055.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
gi|290884399|gb|ADD68099.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
Length = 147
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
++ F +L + DA+ II + + W +M + +E IL +A+ E+
Sbjct: 47 VIEFANRLFTGAAESVDANDEIICRYIRSDWTYERMGE-----VEKDILRVAVHELFRQE 101
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ VIN+ V LA+++ D + ++NG L +N +
Sbjct: 102 APYYAVINDFVTLARKYSDEKSASLVNGILENIRKNFK 139
>gi|403668192|ref|ZP_10933469.1| N utilization substance protein B-like protein [Kurthia sp. JC8E]
Length = 126
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVV-G 250
F KL+ ++ +A ID + + W + GR+ ++ +IL LA+ E+ +
Sbjct: 40 FFEKLVRGTIENQEA----IDASIATNLENWSL----GRLAKVDRTILRLAVFELQFMPE 91
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
T +VINEA++L+K F D + + +NG L +
Sbjct: 92 TPQNVVINEAIELSKTFGDDQSSKFVNGVLSKY 124
>gi|227499439|ref|ZP_03929550.1| possible transcription antitermination protein NusB [Anaerococcus
tetradius ATCC 35098]
gi|227218501|gb|EEI83744.1| possible transcription antitermination protein NusB [Anaerococcus
tetradius ATCC 35098]
Length = 133
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 226 MDQPAGRILEL--SILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
+D RI ++ SIL+L+++EI + + INEAV+LAK++ D +++N L +
Sbjct: 62 LDSKHKRIAKVLRSILYLSINEIYFMDIPVSVSINEAVNLAKKYSDEEDYKLVNSILGSI 121
Query: 284 VR 285
VR
Sbjct: 122 VR 123
>gi|90579826|ref|ZP_01235634.1| transcription antitermination protein NusB [Photobacterium angustum
S14]
gi|330445271|ref|ZP_08308923.1| transcription antitermination factor NusB [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|90438711|gb|EAS63894.1| transcription antitermination protein NusB [Photobacterium angustum
S14]
gi|328489462|dbj|GAA03420.1| transcription antitermination factor NusB [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 156
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 168 DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWK-VWKM 226
+EEE +A VL+AP V + R L VV +H + K+ P + + + +
Sbjct: 45 EEEEHQADAPVLAAPHTDV------SYFRDLFTGVVL---SHQELDSKMRPYLSRPLQDL 95
Query: 227 DQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
DQ +EL++L LAM E + ++VINEA++LAK F + + +NG L
Sbjct: 96 DQ-----MELALLRLAMYEMVKREDVPFKVVINEAIELAKLFGAEDSHKFVNGVL 145
>gi|255323400|ref|ZP_05364531.1| transcription antitermination factor NusB [Campylobacter showae
RM3277]
gi|255299437|gb|EET78723.1| transcription antitermination factor NusB [Campylobacter showae
RM3277]
Length = 131
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H +D ++ K WK+++ +E ++L L E+ T ++INE ++L K
Sbjct: 55 HEDELDALLNARLKEWKINEIGS--IERAVLRLGAYEMKFTPTDKAVIINEGIELGKELG 112
Query: 269 DGAAPRIINGCLRTFVRNL 287
+AP+ ING L +L
Sbjct: 113 GDSAPKFINGVLDALKADL 131
>gi|291542871|emb|CBL15981.1| transcription antitermination factor NusB [Ruminococcus bromii
L2-63]
Length = 164
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ + ++ + DK + II + W + ++ +P+ L+IL LA+ E+ +
Sbjct: 70 YAQAVVSGIEDKHEEIDEIIASHLKKGWTLSRISKPS-----LAILRLAIYEMKYLDNVP 124
Query: 254 QIV-INEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
Q V INEAV+LAK++ + + +NG L T+ R G +
Sbjct: 125 QSVSINEAVELAKKYTIDES-KFVNGILGTYSREFSGKS 162
>gi|315282224|ref|ZP_07870678.1| transcription antitermination factor NusB [Listeria marthii FSL
S4-120]
gi|313614126|gb|EFR87816.1| transcription antitermination factor NusB [Listeria marthii FSL
S4-120]
Length = 128
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID ++ P W+MD+ + ++LS+L +++ EI + +++ +NE++++AK + D
Sbjct: 54 IDAIIEPNLDNWRMDRLSK--VDLSLLRVSVYEIKYLDDVPNRVSLNESIEIAKIYSDEK 111
Query: 272 APRIINGCL 280
+ + ING L
Sbjct: 112 SSKFINGVL 120
>gi|118443864|ref|YP_878051.1| transcription antitermination protein NusB [Clostridium novyi NT]
gi|166215685|sp|A0Q099.1|NUSB_CLONN RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|118134320|gb|ABK61364.1| transcription antitermination factor NusB [Clostridium novyi NT]
Length = 133
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEA 260
+V+ + + IDK + WK+++ + ++L+IL ++ EI + +++ +NEA
Sbjct: 50 IVNGIEQNKEDIDKKIEENLTKWKLNRLSK--IDLTILRISTYEIMFMEDIPNKVAVNEA 107
Query: 261 VDLAKRFCDGAAPRIINGCLRTFVR 285
++LAK++ +P +NG L ++
Sbjct: 108 IELAKKYSADNSPAFVNGVLGNMIK 132
>gi|325661675|ref|ZP_08150298.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471928|gb|EGC75143.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 134
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ R A+ +K V +ID+ + WK + G++ +L+IL LA+ EI
Sbjct: 46 YIRTKYAAIAEK----VEMIDEKINASVTGWKTSR-MGKV-DLTILRLAVYEIEWDEEVP 99
Query: 254 Q-IVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
Q + INEAV+LAKR+ +P ING L V
Sbjct: 100 QGVAINEAVELAKRYGGEESPSFINGVLGKIV 131
>gi|410995126|gb|AFV96591.1| hypothetical protein B649_01385 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 132
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H+ +D+ + K W D+ +E + L L EI ++INEA+++AK F
Sbjct: 56 HLAEVDEAIVKHLKDWDFDRLGS--IERATLRLGGYEIMYGELDSAVIINEAIEVAKAFG 113
Query: 269 DGAAPRIINGCLRTFVRN 286
+P+ ING L R+
Sbjct: 114 SEQSPKFINGVLDAISRD 131
>gi|373495024|ref|ZP_09585617.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
infirmum F0142]
gi|371966693|gb|EHO84177.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
infirmum F0142]
Length = 455
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
F R+++ V++ +I+DK + + K+ L IL + + +I + +
Sbjct: 42 FIREIVYGVIENKIYIDYILDKFIKKGARKTKLQA-------LIILRMGVYQILFMNSVP 94
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIE 294
+ +NE+V L +RF G ING LR F+RN++ + ++
Sbjct: 95 NYAAVNESVALTRRFAKGMDG-FINGVLRNFIRNIDSASEVD 135
>gi|225869862|ref|YP_002745809.1| transcription antitermination protein NusB [Streptococcus equi
subsp. equi 4047]
gi|254772656|sp|C0MBK2.1|NUSB_STRE4 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|225699266|emb|CAW92587.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus equi subsp. equi 4047]
Length = 150
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+ V+D +I K + W + ++ +++ ++L L + E+T+ T
Sbjct: 55 FLLNLVNGVMDHKAELDEVIKKNLKTSWSIERL-----TVVDKTMLRLGLFEMTLFEETP 109
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++ +NE +++AK++ D + + ING L FV +
Sbjct: 110 DRVALNEIIEIAKKYSDDTSAKFINGLLSQFVSD 143
>gi|347754893|ref|YP_004862457.1| transcription antitermination factor NusB [Candidatus
Chloracidobacterium thermophilum B]
gi|347587411|gb|AEP11941.1| transcription antitermination factor NusB [Candidatus
Chloracidobacterium thermophilum B]
Length = 143
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTR 252
F +++ V+ AH+ ID ++ + W++ + A ++ +IL +A+ E + T
Sbjct: 37 FANRIVAGVI----AHLADIDLIISRHAERWRISRMAA--VDRNILRMAVYEFLHEPDTP 90
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+VINEA+++A+RF A + ING L R L+ T
Sbjct: 91 RAVVINEALEIARRFSTLEATQFINGILDAIKRELDETG 129
>gi|1303915|dbj|BAA12571.1| YqhZ [Bacillus subtilis]
Length = 131
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVG 250
F +L+ V++ D +D+++ WK+D+ A IL L+ +A +E V
Sbjct: 40 FFEQLVHGVLEHQDQ----LDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVN 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+ +NEA++LAKRF D A + +NG L
Sbjct: 96 ----VSMNEAIELAKRFGDDKATKFVNGVL 121
>gi|283955145|ref|ZP_06372647.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 414]
gi|283793358|gb|EFC32125.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 414]
Length = 132
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E +IL L E+ T IVINEA++LAK + +P+ ING L ++
Sbjct: 78 VERAILRLGAYELLFSDTPSAIVINEAIELAKELANDNSPKFINGVLDALIK 129
>gi|187251633|ref|YP_001876115.1| NusB antitermination factor [Elusimicrobium minutum Pei191]
gi|254772640|sp|B2KE32.1|NUSB_ELUMP RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|186971793|gb|ACC98778.1| NusB anti-termination factor [Elusimicrobium minutum Pei191]
Length = 140
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 201 AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV--GTRHQIVIN 258
++D H +DK++ K W +++ + +++ SIL +A E+ T VI+
Sbjct: 49 GIIDGALEHQAELDKIISAYAKNWSLNRMS--VVDRSILRMAAYEMLFSPENTPVAAVID 106
Query: 259 EAVDLAKRFCDGAAPRIINGCL 280
EA++LAK+F + R ING L
Sbjct: 107 EAIELAKKFSTENSSRFINGLL 128
>gi|159897280|ref|YP_001543527.1| NusB antitermination factor [Herpetosiphon aurantiacus DSM 785]
gi|254772643|sp|A9AXI5.1|NUSB_HERA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|159890319|gb|ABX03399.1| NusB antitermination factor [Herpetosiphon aurantiacus DSM 785]
Length = 146
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQI----VINEAVDLAKRFC 268
ID ++ I W + Q G +++++L +A+ EI + VINEAV+LAK F
Sbjct: 66 IDDLIAKIAPSWPVHQMPG--VDIAVLRIALFEILYDAAADKAPVKAVINEAVELAKHFG 123
Query: 269 DGAAPRIINGCLRTFVRNLE 288
+ R +NG L T V E
Sbjct: 124 SDNSGRFVNGVLSTVVNKPE 143
>gi|357012955|ref|ZP_09077954.1| transcription antitermination factor NusB [Paenibacillus elgii B69]
Length = 152
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRF 267
H ID ++ K W+MD+ + ++ I+ LA E+ ++V+NEA+++AK F
Sbjct: 65 HKRQIDGLLSDYLKGWQMDRLSK--VDREIMRLATYEMVFREDVPPKVVVNEAIEMAKNF 122
Query: 268 CDGAAPRIINGCLRTFVRNLE 288
+ + +NG L +++LE
Sbjct: 123 GTEESGKFVNGVLGKMIKDLE 143
>gi|270290385|ref|ZP_06196610.1| transcription antitermination factor NusB [Pediococcus acidilactici
7_4]
gi|270281166|gb|EFA26999.1| transcription antitermination factor NusB [Pediococcus acidilactici
7_4]
Length = 134
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + + I K + W V ++ P IL++ + +E+ +
Sbjct: 47 FLDNLVTGVQENVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTEVP-----N 101
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+ INEA++LAK++ D A + ING L ++
Sbjct: 102 NVAINEALELAKKYTDEKARKFINGVLSNVAKD 134
>gi|153952373|ref|YP_001398575.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. doylei 269.97]
gi|166215677|sp|A7H4Z5.1|NUSB_CAMJD RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|152939819|gb|ABS44560.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. doylei 269.97]
Length = 132
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E +IL L E+ T IVINEA++LAK + +P+ +NG L ++
Sbjct: 78 VERAILRLGAYELLFTNTPSAIVINEAIELAKELANDNSPKFMNGVLDALIK 129
>gi|366053054|ref|ZP_09450776.1| transcription antitermination protein NusB [Lactobacillus suebicus
KCTC 3549]
Length = 134
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 199 LVAVVDKWDAHVHIIDKVVPPIW-KVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIV 256
LV +VD A+ ID+ + + K W++ + A +L IL +A+ EI V +
Sbjct: 45 LVKLVDGVVANQDDIDETIESLLAKNWRLSRLAKT--DLVILRIALFEIKFVDDVPDAVA 102
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTF 283
INEA++L K F D + + +NG L +
Sbjct: 103 INEALELTKMFSDDKSKKFVNGVLGNY 129
>gi|398304508|ref|ZP_10508094.1| transcription antitermination protein NusB [Bacillus vallismortis
DV1-F-3]
Length = 131
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 269
+D+++ WK+D+ A IL L +A +E V + +NEA++LAKRF D
Sbjct: 55 LDEMISKHLVNWKLDRIANVDRAILRLGAYEMAYAEDIPVN----VSMNEAIELAKRFGD 110
Query: 270 GAAPRIINGCLRTFVRNLEGT 290
A + +NG L ++E +
Sbjct: 111 DKATKFVNGVLSNIKSDIEQS 131
>gi|295397759|ref|ZP_06807828.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
11563]
gi|294973971|gb|EFG49729.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
11563]
Length = 217
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 211 HIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 270
+ID + W V +++ +IL +++ L ++ V + +NEA++LAK + D
Sbjct: 110 QMIDNHIHGNWSVQRLELVNLQILRVAVFELLFTDEETVP--RVVAVNEAIELAKLYSDD 167
Query: 271 AAPRIINGCLRTFVRNLEGTAN 292
A + ING L + L+ AN
Sbjct: 168 RARKFINGILSNVLAELKANAN 189
>gi|114327667|ref|YP_744824.1| N utilization substance protein B [Granulibacter bethesdensis
CGDNIH1]
gi|119390773|sp|Q0BTF1.1|NUSB_GRABC RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|114315841|gb|ABI61901.1| n utilization substance protein B [Granulibacter bethesdensis
CGDNIH1]
Length = 163
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 197 KLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
+++ A + D ++ +P W + ++D +L L M + G ++V
Sbjct: 65 RIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKD----GPPPRVV 120
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
INE +D+A F G PR++NG L R L
Sbjct: 121 INEYLDIAHGFFQGEEPRMVNGILNALARQL 151
>gi|406992431|gb|EKE11798.1| transcription antitermination factor NusB [uncultured bacterium]
Length = 165
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH----QIVINEAVDLAKRF 267
+I+K P W +DQ +++ +IL L + E+ + G ++ INEA++LAK F
Sbjct: 66 LIEKCAPE----WPLDQVT--VVDRNILRLGIYEL-IFGNYEDVPPKVAINEAIELAKSF 118
Query: 268 CDGAAPRIINGCLRTFVRNL 287
++ R +NG L T R L
Sbjct: 119 GGESSGRFVNGVLGTIYREL 138
>gi|404496489|ref|YP_006720595.1| transcription antitermination factor NusB [Geobacter
metallireducens GS-15]
gi|418064783|ref|ZP_12702159.1| NusB antitermination factor [Geobacter metallireducens RCH3]
gi|119390772|sp|Q39V65.1|NUSB_GEOMG RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|78194092|gb|ABB31859.1| transcription antitermination factor NusB [Geobacter
metallireducens GS-15]
gi|373563056|gb|EHP89257.1| NusB antitermination factor [Geobacter metallireducens RCH3]
Length = 138
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F+ +L+ V++ H ID + K W + + A ++L+IL LA+ E+ G
Sbjct: 46 FSDELVRGVLE----HRETIDATITEKSKNWAISRMAK--VDLNILRLAIYELLYRGDIP 99
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK+F +P ING L
Sbjct: 100 KNVTINEAIEVAKKFGTEDSPAFINGIL 127
>gi|182439837|ref|YP_001827556.1| transcription antitermination protein NusB [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326780501|ref|ZP_08239766.1| NusB antitermination factor [Streptomyces griseus XylebKG-1]
gi|238689031|sp|B1W456.1|NUSB_STRGG RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|178468353|dbj|BAG22873.1| putative NusB-family protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326660834|gb|EGE45680.1| NusB antitermination factor [Streptomyces griseus XylebKG-1]
Length = 143
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEA 260
+V+ + + ID ++ W++D+ +++ SIL L E I + GT +VI+EA
Sbjct: 52 LVEGYAQYADRIDDLIVTYAVDWEIDRMP--VVDRSILRLGAYELIWMDGTPDAVVIDEA 109
Query: 261 VDLAKRFCDGAAPRIINGCLRTF 283
V LAK F +P +NG L F
Sbjct: 110 VQLAKEFSTDDSPSFVNGLLARF 132
>gi|33860569|ref|NP_892130.1| transcription antitermination protein NusB [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633511|emb|CAE18468.1| Antitermination protein NusB [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 209
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID + + W++ + ++ IL LA +I + T + +EAV+LA ++CD
Sbjct: 135 IDSEIDEVMDRWRLKRLPR--VDRDILRLAYVDIHFLDTPVAVACDEAVNLANKYCDTQG 192
Query: 273 PRIINGCLRTFVR 285
++ING LR R
Sbjct: 193 RKMINGVLRRLQR 205
>gi|153005587|ref|YP_001379912.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
gi|166215659|sp|A7HDY2.1|NUSB_ANADF RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|152029160|gb|ABS26928.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
Length = 143
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF 267
AH ID + + W++D+ A ++ ++L LA+ E+ ++ INEA++L K++
Sbjct: 57 AHRRTIDDTIEGVSTNWRLDRMAK--VDRNVLRLAVYELLRTDVPVKVAINEAIELGKKY 114
Query: 268 CDGAAPRIINGCL 280
++ +NG L
Sbjct: 115 GSESSGAFVNGVL 127
>gi|72383173|ref|YP_292528.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. NATL2A]
gi|72003023|gb|AAZ58825.1| antitermination protein NusB [Prochlorococcus marinus str. NATL2A]
Length = 208
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAV 261
V++K D H +D V+ W++ ++ + ++ IL LA ++ T + NEAV
Sbjct: 123 VIEKQDEIDHKLDSVMEG-WRLKRLPR-----IDSDILRLAWVDLIDFNTPMAVTCNEAV 176
Query: 262 DLAKRFCDGAAPRIINGCLRTF 283
+LA R+ D R+ING LR
Sbjct: 177 NLANRYSDEQGRRMINGVLRKL 198
>gi|22537833|ref|NP_688684.1| transcription antitermination protein NusB [Streptococcus
agalactiae 2603V/R]
gi|25011777|ref|NP_736172.1| transcription antitermination protein NusB [Streptococcus
agalactiae NEM316]
gi|76787394|ref|YP_330307.1| transcription antitermination protein NusB [Streptococcus
agalactiae A909]
gi|76798712|ref|ZP_00780933.1| transcription antitermination factor NusB [Streptococcus agalactiae
18RS21]
gi|77406598|ref|ZP_00783645.1| transcription antitermination factor NusB [Streptococcus agalactiae
H36B]
gi|77409287|ref|ZP_00785993.1| transcription antitermination factor NusB [Streptococcus agalactiae
COH1]
gi|77412442|ref|ZP_00788747.1| transcription antitermination factor NusB [Streptococcus agalactiae
CJB111]
gi|77413939|ref|ZP_00790114.1| transcription antitermination factor NusB [Streptococcus agalactiae
515]
gi|339300907|ref|ZP_08650033.1| transcription antitermination factor NusB [Streptococcus agalactiae
ATCC 13813]
gi|406710072|ref|YP_006764798.1| transcription antitermination protein NusB [Streptococcus
agalactiae GD201008-001]
gi|417006074|ref|ZP_11944644.1| transcription antitermination protein NusB [Streptococcus
agalactiae FSL S3-026]
gi|421147988|ref|ZP_15607660.1| transcription antitermination protein NusB [Streptococcus
agalactiae GB00112]
gi|424048863|ref|ZP_17786414.1| transcription antitermination protein NusB [Streptococcus
agalactiae ZQ0910]
gi|54037925|sp|P65581.1|NUSB_STRA5 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|54041675|sp|P65580.1|NUSB_STRA3 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|119390832|sp|Q3JZJ6.1|NUSB_STRA1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|22534728|gb|AAN00557.1|AE014269_1 N utilization substance protein B [Streptococcus agalactiae
2603V/R]
gi|24413317|emb|CAD47396.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562451|gb|ABA45035.1| transcription antitermination factor NusB [Streptococcus agalactiae
A909]
gi|76585937|gb|EAO62474.1| transcription antitermination factor NusB [Streptococcus agalactiae
18RS21]
gi|77160024|gb|EAO71160.1| transcription antitermination factor NusB [Streptococcus agalactiae
515]
gi|77161506|gb|EAO72512.1| transcription antitermination factor NusB [Streptococcus agalactiae
CJB111]
gi|77172119|gb|EAO75282.1| transcription antitermination factor NusB [Streptococcus agalactiae
COH1]
gi|77174791|gb|EAO77613.1| transcription antitermination factor NusB [Streptococcus agalactiae
H36B]
gi|319745636|gb|EFV97936.1| transcription antitermination factor NusB [Streptococcus agalactiae
ATCC 13813]
gi|341576255|gb|EGS26666.1| transcription antitermination protein NusB [Streptococcus
agalactiae FSL S3-026]
gi|389649632|gb|EIM71108.1| transcription antitermination protein NusB [Streptococcus
agalactiae ZQ0910]
gi|401685326|gb|EJS81334.1| transcription antitermination protein NusB [Streptococcus
agalactiae GB00112]
gi|406650957|gb|AFS46358.1| transcription antitermination protein NusB [Streptococcus
agalactiae GD201008-001]
Length = 144
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+ VVD D +I + W + ++ +++ S+L L + EI T
Sbjct: 54 FLLNLVNGVVDHKDELDTLISSHLKSGWSLERL-----TLVDKSLLRLGLYEIKYFDETP 108
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++ +NE +++AK++ D + + +NG L F+ N
Sbjct: 109 DRVALNEIIEIAKKYSDETSAKFVNGLLSQFITN 142
>gi|313681443|ref|YP_004059181.1| nusb antitermination factor [Sulfuricurvum kujiense DSM 16994]
gi|313154303|gb|ADR32981.1| NusB antitermination factor [Sulfuricurvum kujiense DSM 16994]
Length = 132
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H+ ID+ + K W D+ +E + L L EI ++INEA+++AK F
Sbjct: 56 HLSEIDEAIVKHLKDWDFDRLGS--IERATLRLGGYEIMFGELDSAVIINEAIEVAKAFG 113
Query: 269 DGAAPRIINGCL 280
+P+ ING L
Sbjct: 114 SEQSPKFINGVL 125
>gi|56461241|ref|YP_156522.1| transcription termination factor NusB [Idiomarina loihiensis L2TR]
gi|81599971|sp|Q5QVE5.1|NUSB_IDILO RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|56180251|gb|AAV82973.1| Transcription termination factor NusB [Idiomarina loihiensis L2TR]
Length = 139
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEI-TVVGTRHQIVINEAVDLA 264
H +D+ + P +D+P + +EL++L LA E+ V +++ INEA++LA
Sbjct: 57 GHYRTLDEALEPF-----LDRPIKELDPIELAVLRLAAYELRERVDVPYKVAINEAIELA 111
Query: 265 KRFCDGAAPRIINGCL 280
K F + R +NG L
Sbjct: 112 KSFGADESHRFVNGVL 127
>gi|255994610|ref|ZP_05427745.1| transcription antitermination factor NusB [Eubacterium saphenum
ATCC 49989]
gi|255993323|gb|EEU03412.1| transcription antitermination factor NusB [Eubacterium saphenum
ATCC 49989]
Length = 135
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ R++ V D DA ID + K W +D ++L+IL LA++EI
Sbjct: 46 YIREVFSLVTDNIDA----IDAELNAKMKGWTIDSIPK--VDLAILRLAVAEICYAKDIP 99
Query: 254 QIV-INEAVDLAKRFCDGAAPRIINGCL 280
++V +NEAV +AK+F D + + ING L
Sbjct: 100 KVVAVNEAVRIAKKFSDDKSAKFINGIL 127
>gi|304384736|ref|ZP_07367082.1| transcription antitermination factor NusB [Pediococcus acidilactici
DSM 20284]
gi|427439964|ref|ZP_18924493.1| NusB antitermination factor [Pediococcus lolii NGRI 0510Q]
gi|304328930|gb|EFL96150.1| transcription antitermination factor NusB [Pediococcus acidilactici
DSM 20284]
gi|425787796|dbj|GAC45281.1| NusB antitermination factor [Pediococcus lolii NGRI 0510Q]
Length = 127
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + + I K + W V ++ P IL++ + +E+ +
Sbjct: 40 FLDNLVTGVQENVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTEVP-----N 94
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+ INEA++LAK++ D A + ING L ++
Sbjct: 95 SVAINEALELAKKYTDEKARKFINGVLSNVAKD 127
>gi|225174889|ref|ZP_03728886.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
gi|225169529|gb|EEG78326.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
Length = 138
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F+R+L++ + +A IDK + + W++ + A ++ ++L LA EI R
Sbjct: 44 FSRQLVLGTLKNLEA----IDKALAGYLQKWELGRLAA--VDRNVLRLAAFEILY---RE 94
Query: 254 QI----VINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 289
I INEA++L+K F A + +NG L R+ EG
Sbjct: 95 DIPAAVTINEALELSKAFHSEEAAKFLNGVLDKLARHHEG 134
>gi|108804294|ref|YP_644231.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
gi|119390815|sp|Q1AW09.1|NUSB_RUBXD RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|108765537|gb|ABG04419.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
Length = 139
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
W VW+M ++ +IL LA+ E+ V ++ +NEAV+LAK F AP + G
Sbjct: 67 WPVWRMSA-----VDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEEAPSFVGGV 121
Query: 280 LR 281
LR
Sbjct: 122 LR 123
>gi|113460974|ref|YP_719041.1| transcription antitermination protein NusB [Haemophilus somnus
129PT]
gi|119390774|sp|Q0I3N5.1|NUSB_HAES1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|112823017|gb|ABI25106.1| N utilization substance protein B [Haemophilus somnus 129PT]
Length = 144
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTR 252
+ RKL VD HV I+D ++ P D +E +IL LA+ E+ +
Sbjct: 54 YFRKLFRQTVD----HVEIVDSIMAP---YLDRDNVELDPIECAILRLAVYELKFELDVP 106
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
+++VINEA+++AK F + + ING L
Sbjct: 107 YKVVINEAIEVAKVFGAEESHKYINGVL 134
>gi|401564436|ref|ZP_10805329.1| transcription antitermination factor NusB [Selenomonas sp. FOBRC6]
gi|400188838|gb|EJO22974.1| transcription antitermination factor NusB [Selenomonas sp. FOBRC6]
Length = 136
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 201 AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQ--IVIN 258
A+V AH+ ID + + K WK+ + A ++ +++ +A E+ R + IN
Sbjct: 50 ALVQGTHAHLAEIDAEIARLAKEWKLHRMAA--VDRNLIRMAYYEMRYQDERIDPPVAIN 107
Query: 259 EAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
EAV+LAK++ A R +NG L ++L
Sbjct: 108 EAVELAKKYGSDDARRYVNGILAAMQKSL 136
>gi|418069008|ref|ZP_12706288.1| NusB antitermination factor [Pediococcus acidilactici MA18/5M]
gi|357537741|gb|EHJ21764.1| NusB antitermination factor [Pediococcus acidilactici MA18/5M]
Length = 134
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F L+ V + + I K + W V ++ P IL++ + +E+ +
Sbjct: 47 FLDNLVTGVQENVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTEVP-----N 101
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+ INEA++LAK++ D A + ING L ++
Sbjct: 102 SVAINEALELAKKYTDEKARKFINGVLSNVAKD 134
>gi|406971315|gb|EKD95429.1| hypothetical protein ACD_24C00490G0003 [uncultured bacterium]
Length = 149
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVP--PIWKVWKMDQPAGRILELSILHLAMSEITVV 249
L T K++ V + A II K P PI K+ K+D L +L +A+ EI V
Sbjct: 49 LGLTNKIVEGVTNNLKAIDKIIQKAAPEWPIDKISKID--------LVVLRIAIFEI-VF 99
Query: 250 GTR--HQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
G ++ I+EAV+LAK F + + + +NG L + V
Sbjct: 100 GKSVPEKVAIDEAVELAKEFGNDTSSKFVNGVLGSVV 136
>gi|406949446|gb|EKD79929.1| transcription antitermination protein NusB [uncultured bacterium]
Length = 108
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 219 PIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIING 278
P W + K+++ ++L+IL +A E+ T ++VI+EAV++AK + ++ +NG
Sbjct: 41 PEWPLSKINK-----IDLAILRVATDELLHSDTPPKVVIDEAVEIAKTYGTESSASFVNG 95
Query: 279 CLRTFVRNLE 288
L T ++ L
Sbjct: 96 VLGTILKGLH 105
>gi|339480137|ref|ZP_08655796.1| NusB antitermination factor [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 134
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 235 ELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
+L IL LA+ E +++ T +++ I+EAV+L K F D + +NG L+ F
Sbjct: 81 DLVILRLAIYELVSIKATPYKVAIDEAVELTKTFADDDDRKFVNGVLKNF 130
>gi|217964495|ref|YP_002350173.1| transcription antitermination protein NusB [Listeria monocytogenes
HCC23]
gi|386008131|ref|YP_005926409.1| transcription antitermination factor [Listeria monocytogenes L99]
gi|386026731|ref|YP_005947507.1| transcription termination factor [Listeria monocytogenes M7]
gi|386043670|ref|YP_005962475.1| transcription antitermination factor NusB [Listeria monocytogenes
10403S]
gi|404410657|ref|YP_006696245.1| transcription antitermination factor [Listeria monocytogenes
SLCC5850]
gi|254772645|sp|B8DFW9.1|NUSB_LISMH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|217333765|gb|ACK39559.1| transcription antitermination factor NusB [Listeria monocytogenes
HCC23]
gi|307570941|emb|CAR84120.1| transcription antitermination factor [Listeria monocytogenes L99]
gi|336023312|gb|AEH92449.1| transcription termination factor [Listeria monocytogenes M7]
gi|345536904|gb|AEO06344.1| transcription antitermination factor NusB [Listeria monocytogenes
10403S]
gi|404230483|emb|CBY51887.1| transcription antitermination factor [Listeria monocytogenes
SLCC5850]
Length = 128
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID ++ P W++D+ + ++LS+L L++ EI + +++ +NE++++AK + D
Sbjct: 54 IDAIIEPNLDNWRIDRLSK--VDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAKIYSDEK 111
Query: 272 APRIINGCL 280
+ + ING L
Sbjct: 112 SSKFINGVL 120
>gi|406903671|gb|EKD45678.1| transcriptional terminator NusB [uncultured bacterium]
Length = 140
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 209 HVHIIDKVVPPIW--KVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAK 265
+V ID+V+ P+ K+ +D +EL++L LA E+ + + +++VINEA++L K
Sbjct: 58 NVGAIDEVITPLLDRKITDLDA-----VELAVLRLATYELMLRLDVPYKVVINEALELTK 112
Query: 266 RFCDGAAPRIINGCLRTFVRNL 287
F + ING L R L
Sbjct: 113 NFGSIEGYKYINGVLDKVARQL 134
>gi|408676809|ref|YP_006876636.1| Transcription termination protein NusB [Streptomyces venezuelae
ATCC 10712]
gi|328881138|emb|CCA54377.1| Transcription termination protein NusB [Streptomyces venezuelae
ATCC 10712]
Length = 145
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-VVGTR 252
FT +L V+ + AHV ID+++ W +D+ + + +I+ L E+ GT
Sbjct: 48 FTMQL----VEGYAAHVARIDELIATYAVDWDLDRMP--VADRNIVRLGAYEVIWEDGTP 101
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
+ I+EAV LAK F +P +NG L F
Sbjct: 102 DAVAIDEAVQLAKEFSTDESPTFVNGLLARF 132
>gi|407001809|gb|EKE18719.1| N utilization substance protein B [uncultured bacterium]
Length = 171
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F + L+ ++K + +I+K P W ++Q I++ +IL L + E+
Sbjct: 48 FVKALVKGTLEKRNVVDALIEKCAPE----WPLEQVT--IIDRNILRLGIYELMHGNYGE 101
Query: 254 ---QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 302
++ INE+++LAK F ++ R +NG L T R + + SK K+V
Sbjct: 102 VPPKVAINESIELAKTFGGESSARFVNGVLGTIYREMGEPMKDDTSKNHKKV 153
>gi|289208845|ref|YP_003460911.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
gi|288944476|gb|ADC72175.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
Length = 187
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 234 LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 289
+E ++L L E+ + +++VINEAVDLAKRF + R ING L +L G
Sbjct: 124 VERALLWLGQWELAERIDVPYRVVINEAVDLAKRFGAEQSHRYINGVLDRLSADLRG 180
>gi|290893532|ref|ZP_06556515.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J2-071]
gi|404407796|ref|YP_006690511.1| transcription antitermination factor [Listeria monocytogenes
SLCC2376]
gi|290556877|gb|EFD90408.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J2-071]
gi|404241945|emb|CBY63345.1| transcription antitermination factor [Listeria monocytogenes
SLCC2376]
Length = 128
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID ++ P W++D+ + ++LS+L L++ EI + +++ +NE++++AK + D
Sbjct: 54 IDAIIEPNLDNWRIDRLSK--VDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAKIYSDEK 111
Query: 272 APRIINGCL 280
+ + ING L
Sbjct: 112 SSKFINGVL 120
>gi|338812845|ref|ZP_08624998.1| NusB antitermination factor [Acetonema longum DSM 6540]
gi|337275144|gb|EGO63628.1| NusB antitermination factor [Acetonema longum DSM 6540]
Length = 137
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-- 252
TR +V H+ ID+++ WK+++ AG ++ +I LA+ E+ +
Sbjct: 43 TRTYAHELVQGTKNHLPEIDRIIAGNSPDWKLERMAG--VDRNITRLAIYEMNFGKSPLP 100
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+VINEAV+LAK F + R +NG L + +
Sbjct: 101 PNVVINEAVELAKSFGTEDSGRFVNGILGSLAK 133
>gi|337287225|ref|YP_004626698.1| NusB antitermination factor [Thermodesulfatator indicus DSM 15286]
gi|335360053|gb|AEH45734.1| NusB antitermination factor [Thermodesulfatator indicus DSM 15286]
Length = 139
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV- 249
+L F ++L+ V +K + IDK++ K WK+ + + + +IL LA E+
Sbjct: 42 VLEFAKELVNGVAEKQEE----IDKIIEKYAKHWKLSRMSA--TDRNILRLATYELLYRP 95
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++ INEA++LAK F + +NG L R+
Sbjct: 96 DIPERVSINEAIELAKSFGSDESASFVNGILDAIYRH 132
>gi|334127644|ref|ZP_08501549.1| transcription antitermination factor NusB [Centipeda periodontii
DSM 2778]
gi|333388957|gb|EGK60124.1| transcription antitermination factor NusB [Centipeda periodontii
DSM 2778]
Length = 136
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQ--IVINEAVDLAK 265
AH+ ID+ + + K WK+ + A ++ +++ +A E+ R I INEAV+LAK
Sbjct: 57 AHLAEIDEEIARLAKEWKLHRMAA--VDRNLIRMAYYEMRYQEERIDPPIAINEAVELAK 114
Query: 266 RFCDGAAPRIINGCL 280
++ A R +NG L
Sbjct: 115 KYGSDEASRYVNGIL 129
>gi|333897015|ref|YP_004470889.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333112280|gb|AEF17217.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 139
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRF 267
+V ID+ + K W +++ A ++L+I+ + EI + INEAV++AK++
Sbjct: 54 NVDNIDEKIKKYLKNWDINRIAK--IDLAIMRCSFYEILYSTDIPSSVSINEAVEIAKKY 111
Query: 268 CDGAAPRIINGCLRTFVRNLEG 289
+P ING L VR++ G
Sbjct: 112 STEKSPAFINGILGNLVRDIIG 133
>gi|420442996|ref|ZP_14941925.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-41]
gi|393061401|gb|EJB62266.1| transcription antitermination factor NusB [Helicobacter pylori Hp
H-41]
Length = 138
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F L V+++ ++ ID ++ K W + +E +IL L EI T
Sbjct: 43 LAFALSLFNGVLER----INEIDALIESHLKDWDFKRLGS--MEKAILRLGAYEIGFTPT 96
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ I+INE ++L K + + P+ +N L + + L
Sbjct: 97 QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|148238346|ref|YP_001223733.1| transcription antitermination protein NusB [Synechococcus sp. WH
7803]
gi|147846885|emb|CAK22436.1| Transcription termination factor, NusB [Synechococcus sp. WH 7803]
Length = 210
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 270
+D + + + W++ R+ ++ IL LA+ ++ + T + NEAV+LA R+ D
Sbjct: 133 LDDQLDSVMEGWRL----SRLPRIDRDILRLAVVDLQSMKTPASVACNEAVELANRYSDE 188
Query: 271 AAPRIINGCLRTF 283
R+ING LR
Sbjct: 189 QGRRMINGVLRRL 201
>gi|223933712|ref|ZP_03625687.1| NusB antitermination factor [Streptococcus suis 89/1591]
gi|253752490|ref|YP_003025631.1| transcription antitermination protein NusB [Streptococcus suis
SC84]
gi|253754316|ref|YP_003027457.1| transcription antitermination protein NusB [Streptococcus suis
P1/7]
gi|253756250|ref|YP_003029390.1| transcription antitermination protein NusB [Streptococcus suis
BM407]
gi|302024430|ref|ZP_07249641.1| transcription antitermination protein NusB [Streptococcus suis
05HAS68]
gi|330833433|ref|YP_004402258.1| transcription antitermination protein NusB [Streptococcus suis ST3]
gi|386580706|ref|YP_006077111.1| transcription antitermination protein NusB [Streptococcus suis
JS14]
gi|386582781|ref|YP_006079185.1| transcription antitermination protein NusB [Streptococcus suis
SS12]
gi|386584841|ref|YP_006081244.1| transcription antitermination protein NusB [Streptococcus suis D9]
gi|386586899|ref|YP_006083301.1| transcription antitermination protein NusB [Streptococcus suis D12]
gi|386588904|ref|YP_006085305.1| transcription antitermination protein NusB [Streptococcus suis A7]
gi|403062248|ref|YP_006650464.1| transcription antitermination protein NusB [Streptococcus suis
S735]
gi|417092161|ref|ZP_11956895.1| transcription antitermination protein NusB [Streptococcus suis R61]
gi|223897628|gb|EEF64014.1| NusB antitermination factor [Streptococcus suis 89/1591]
gi|251816779|emb|CAZ52422.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis SC84]
gi|251818714|emb|CAZ56550.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis BM407]
gi|251820562|emb|CAR47318.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis P1/7]
gi|319758898|gb|ADV70840.1| transcription antitermination protein NusB [Streptococcus suis
JS14]
gi|329307656|gb|AEB82072.1| transcription antitermination protein NusB [Streptococcus suis ST3]
gi|353532730|gb|EHC02399.1| transcription antitermination protein NusB [Streptococcus suis R61]
gi|353734927|gb|AER15937.1| transcription antitermination protein NusB [Streptococcus suis
SS12]
gi|353736987|gb|AER17996.1| transcription antitermination protein NusB [Streptococcus suis D9]
gi|353739045|gb|AER20053.1| transcription antitermination protein NusB [Streptococcus suis D12]
gi|354986065|gb|AER44963.1| transcription antitermination protein NusB [Streptococcus suis A7]
gi|402809574|gb|AFR01066.1| transcription antitermination protein NusB [Streptococcus suis
S735]
Length = 139
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 224 WKMDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRT 282
W +D+ +++ +I+ L + EI T ++ +NEA++LAK F D ++ + +NG L
Sbjct: 76 WTLDRLT--LIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFSDESSAKFVNGVLSQ 133
Query: 283 FVR 285
F++
Sbjct: 134 FIK 136
>gi|118579723|ref|YP_900973.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
gi|166215707|sp|A1ANJ5.1|NUSB_PELPD RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|118502433|gb|ABK98915.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
Length = 143
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F +L+ V++ H ID + K W + + ++L+I+ LA E+ G
Sbjct: 46 FAEELVQGVLE----HRPAIDAAIKARSKNWSLSRMPK--VDLNIMRLATYELMFRGDIP 99
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
++ INEA+++A+RF D +P +NG L
Sbjct: 100 KKVSINEAIEIARRFGDKDSPAFVNGIL 127
>gi|146321671|ref|YP_001201382.1| transcription antitermination protein NusB [Streptococcus suis
98HAH33]
gi|386578633|ref|YP_006075039.1| Antitermination protein NusB [Streptococcus suis GZ1]
gi|145692477|gb|ABP92982.1| Transcription termination factor [Streptococcus suis 98HAH33]
gi|292559096|gb|ADE32097.1| Antitermination protein NusB [Streptococcus suis GZ1]
Length = 140
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 224 WKMDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRT 282
W +D+ +++ +I+ L + EI T ++ +NEA++LAK F D ++ + +NG L
Sbjct: 77 WTLDRLT--LIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFSDESSAKFVNGVLSQ 134
Query: 283 FVR 285
F++
Sbjct: 135 FIK 137
>gi|237750245|ref|ZP_04580725.1| predicted protein [Helicobacter bilis ATCC 43879]
gi|229374139|gb|EEO24530.1| predicted protein [Helicobacter bilis ATCC 43879]
Length = 368
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 216 VVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRI 275
++ K W + + ++E +I+ L + E+ T+ ++INEA++L K F A R+
Sbjct: 63 IINVFLKSWDLSRLG--VIEKNIIKLGVYELLQTNTQKAVIINEAIELTKSFNVQDAFRL 120
Query: 276 INGCLRTFVR 285
+NG L + +
Sbjct: 121 VNGILDSVAK 130
>gi|27363793|ref|NP_759321.1| transcription antitermination protein NusB [Vibrio vulnificus
CMCP6]
gi|37679049|ref|NP_933658.1| transcription antitermination protein NusB [Vibrio vulnificus
YJ016]
gi|320157202|ref|YP_004189581.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
MO6-24/O]
gi|29611804|sp|Q8DFA0.1|NUSB_VIBVU RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|39931709|sp|Q7MN52.1|NUSB_VIBVY RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|27359910|gb|AAO08848.1| transcription antitermination factor NusB [Vibrio vulnificus CMCP6]
gi|37197791|dbj|BAC93629.1| transcription termination factor [Vibrio vulnificus YJ016]
gi|319932514|gb|ADV87378.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
MO6-24/O]
Length = 155
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 10/89 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITVV-GT 251
+ R LL VV +H + K+ P + + + +D ++EL++L LAM E+T
Sbjct: 65 YFRDLLTGVVL---SHTELDSKIRPYVSRPMQDLD-----MMELALLRLAMYEMTRREDV 116
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+++VINEA++LAK F + + +NG L
Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>gi|57233932|ref|YP_181990.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
gi|119390764|sp|Q3Z709.1|NUSB_DEHE1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|57224380|gb|AAW39437.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
Length = 143
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 13/89 (14%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQ------IVINEAVD 262
H ++D+ + W ++Q + ++ ++L LA+ EI H+ + INEAV+
Sbjct: 57 HKDLLDENIRQFASAWPVEQLS--YIDRNVLRLAIFEII-----HENDVPIKVAINEAVE 109
Query: 263 LAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
LAK F ++ R ING L + + L TA
Sbjct: 110 LAKSFGGNSSARFINGVLSSVSKALADTA 138
>gi|331091280|ref|ZP_08340121.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330404727|gb|EGG84266.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 132
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
WK +M++ IL L+ L E VG + INEAV+LAK++ P +NG L
Sbjct: 72 WKTARMNKVDLTILRLATYELKWDEDVPVG----VAINEAVELAKKYSSEEGPSFVNGVL 127
Query: 281 RTFV 284
V
Sbjct: 128 GKLV 131
>gi|134298933|ref|YP_001112429.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
gi|172044268|sp|A4J3F1.1|NUSB_DESRM RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|134051633|gb|ABO49604.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
Length = 143
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VG 250
+ F R+L++ ++ H+ ID ++ + K W++++ A ++ +I+ LA+ E+
Sbjct: 42 IEFARQLVMGTLE----HIEEIDAMIGKVSKEWQLNRMAN--VDRNIMRLAIFEMNYRAD 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
+ +NEA++L+K F + R ING L + N
Sbjct: 96 IPKSVSVNEALELSKIFGTPDSVRFINGILGKLLDN 131
>gi|422759810|ref|ZP_16813572.1| transcription antitermination protein NusB [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|322412645|gb|EFY03553.1| transcription antitermination protein NusB [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 149
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVG-TRHQI 255
L+ +V+ + H +D+ + K W +++ + + ++L L + EI T ++
Sbjct: 55 FLLNLVNGVNDHKEELDRTISEHLKTGWSLERLT--VTDKTLLRLGLFEIKYFNETPDRV 112
Query: 256 VINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NE +++AK++ D + + ING L FV
Sbjct: 113 ALNEIIEVAKKYSDETSAKFINGLLSQFV 141
>gi|406913886|gb|EKD53183.1| hypothetical protein ACD_61C00122G0016 [uncultured bacterium]
Length = 129
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 203 VDKWDAHVHIIDKVVP---PIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVIN 258
VDK ++H+ ID+++ P W + ++++ ++L++L A+ E+ T +++I+
Sbjct: 34 VDKINSHLTQIDEIIQKCAPEWPISQINR-----VDLAVLRQAVYELLFKAQTPTKVIID 88
Query: 259 EAVDLAKRFCDGAAPRIINGCL 280
EAV++AKR+ + +NG L
Sbjct: 89 EAVEIAKRYGGKTSSSFVNGAL 110
>gi|116625277|ref|YP_827433.1| NusB antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
gi|122252386|sp|Q01T72.1|NUSB_SOLUE RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|116228439|gb|ABJ87148.1| NusB antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 146
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 224 WKMDQ-PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRT 282
W+M++ PA ++ +IL LA+ E+T GT + I+EA++LA++F + + + +NG L
Sbjct: 73 WRMERMPA---VDRNILRLAVYEMTRGGTPAPVTIDEALELARKFSNEESVQFVNGVLDA 129
Query: 283 FVRNL 287
R +
Sbjct: 130 VRREM 134
>gi|225869187|ref|YP_002745135.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus equi subsp. zooepidemicus]
gi|259514901|sp|C0MED0.1|NUSB_STRS7 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|225702463|emb|CAX00364.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus equi subsp. zooepidemicus]
Length = 150
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+ V+D +I K + W + ++ +++ ++L L + E+T+ T
Sbjct: 55 FLLNLVNGVMDHKAELDEVIKKNLKAGWSIERL-----TVVDKTMLRLGLFEMTLFEETP 109
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++ +NE +++AK++ D + + ING L FV +
Sbjct: 110 DRVALNEIIEIAKKYSDDTSAKFINGLLSQFVSD 143
>gi|320104116|ref|YP_004179707.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
gi|319751398|gb|ADV63158.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
Length = 177
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRF 267
H ID+V+ + + W++D+ A ++ ++L L E+ + + I EAV+L KRF
Sbjct: 58 HRETIDQVISDLARNWRLDRMAA--IDRNVLRLGTYEVLYRLDVPVAVAITEAVELVKRF 115
Query: 268 CDGAAPRIINGCL 280
+ R +NG L
Sbjct: 116 GSAQSSRFVNGIL 128
>gi|191638628|ref|YP_001987794.1| transcription antitermination protein NusB [Lactobacillus casei
BL23]
gi|385820343|ref|YP_005856730.1| Transcription termination protein nusB [Lactobacillus casei LC2W]
gi|385823537|ref|YP_005859879.1| Transcription termination protein nusB [Lactobacillus casei BD-II]
gi|409997487|ref|YP_006751888.1| N utilization substance protein B [Lactobacillus casei W56]
gi|418002316|ref|ZP_12642437.1| transcription termination protein [Lactobacillus casei UCD174]
gi|238693054|sp|B3WEY5.1|NUSB_LACCB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|190712930|emb|CAQ66936.1| N utilization substance protein B homolog (Protein nusB)
[Lactobacillus casei BL23]
gi|327382670|gb|AEA54146.1| Transcription termination protein nusB [Lactobacillus casei LC2W]
gi|327385864|gb|AEA57338.1| Transcription termination protein nusB [Lactobacillus casei BD-II]
gi|406358499|emb|CCK22769.1| N utilization substance protein B homolog [Lactobacillus casei W56]
gi|410544478|gb|EKQ18804.1| transcription termination protein [Lactobacillus casei UCD174]
Length = 135
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
W + ++ +P +L IL L + EI INEA++LAKR+ D + + +NG
Sbjct: 70 WSLSRLTKP-----DLIILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGI 124
Query: 280 LRTFVR 285
L F++
Sbjct: 125 LANFIQ 130
>gi|410638133|ref|ZP_11348698.1| N utilization substance protein B [Glaciecola lipolytica E3]
gi|410142330|dbj|GAC15903.1| N utilization substance protein B [Glaciecola lipolytica E3]
Length = 143
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 233 ILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++E +IL +A E+T + +++VINEA++LAK F + + ING L ++ L
Sbjct: 79 VVEKAILRIATYELTARIDVPYKVVINEAIELAKSFGAEESHKFINGVLDKAIKTL 134
>gi|150016575|ref|YP_001308829.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
gi|189035883|sp|A6LU43.1|NUSB_CLOB8 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|149903040|gb|ABR33873.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
Length = 133
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 165 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVW 224
L D E A+EA V + + ++ L + +++L+ V + +A IDKV+ W
Sbjct: 19 LSKDTMEDAVEAFVENYEGDI--KEIDLTYVKQVLIGVNNNKEA----IDKVIQENLHNW 72
Query: 225 KMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
K+++ + + LSIL +A E+ + INEA+++ +R+ D + ING L
Sbjct: 73 KIERISK--VNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEKSVSFINGVL 127
>gi|56416682|ref|YP_153756.1| N utilization substance protein B [Anaplasma marginale str. St.
Maries]
gi|222475047|ref|YP_002563462.1| N utilization substance protein B [Anaplasma marginale str.
Florida]
gi|56387914|gb|AAV86501.1| N utilization substance protein B [Anaplasma marginale str. St.
Maries]
gi|222419183|gb|ACM49206.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Florida]
Length = 177
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPP-IWKVWKMDQPAGRILELSILHLAMSEITVV 249
L R +KLL ++ A ID + I K W MD+ ++ LSI+ + E+
Sbjct: 60 LGRVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRI--NLVSLSIMRAGICELLCF 117
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
T IVINE VD+A + A +N L
Sbjct: 118 STNESIVINEYVDIASYALEDAEVNFVNAIL 148
>gi|404413435|ref|YP_006699022.1| transcription antitermination factor [Listeria monocytogenes
SLCC7179]
gi|404239134|emb|CBY60535.1| transcription antitermination factor [Listeria monocytogenes
SLCC7179]
Length = 128
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
ID ++ P W++D+ + ++LS+L L++ EI + +++ +NE++++AK + D
Sbjct: 54 IDAIIEPNLDNWRIDRLSK--VDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAKIYSDEK 111
Query: 272 APRIINGCL 280
+ + ING L
Sbjct: 112 SSKFINGVL 120
>gi|374579585|ref|ZP_09652679.1| transcription antitermination factor NusB [Desulfosporosinus
youngiae DSM 17734]
gi|374415667|gb|EHQ88102.1| transcription antitermination factor NusB [Desulfosporosinus
youngiae DSM 17734]
Length = 143
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRH 253
+R +VD AH ID+ + + W +++ A ++ +++ LA EI
Sbjct: 43 SRNFAQELVDGTIAHQDEIDQTISSFAQDWTLNRMAK--VDRNVMRLAAYEILYRSDIPG 100
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++ +NEA++LAKRF + + +NG L V N
Sbjct: 101 RVSLNEAIELAKRFGGEESAKFVNGILDRIVDN 133
>gi|350266629|ref|YP_004877936.1| transcription antitermination factor NusB [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349599516|gb|AEP87304.1| transcription antitermination factor NusB [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 131
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 213 IDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 269
+D+++ WK+D+ A IL L+ +A +E V + +NEA++LAKRF D
Sbjct: 55 LDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVN----VSMNEAIELAKRFGD 110
Query: 270 GAAPRIINGCLRTFVRNLEGT 290
A + +NG L +++ +
Sbjct: 111 DKATKFVNGVLSNIKSDIDQS 131
>gi|343500588|ref|ZP_08738478.1| transcription antitermination protein NusB [Vibrio tubiashii ATCC
19109]
gi|418477321|ref|ZP_13046454.1| transcription antitermination protein NusB [Vibrio tubiashii NCIMB
1337 = ATCC 19106]
gi|342819950|gb|EGU54781.1| transcription antitermination protein NusB [Vibrio tubiashii ATCC
19109]
gi|384575061|gb|EIF05515.1| transcription antitermination protein NusB [Vibrio tubiashii NCIMB
1337 = ATCC 19106]
Length = 155
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE LS P V + R LL VV +
Sbjct: 26 ITKENVATIEEQFLSGGKYDEEEHHASEPALSTPDTDV------AYFRDLLTGVVL---S 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HTELDCKIRPYTARPMQDLD-----MMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEESHKFVNGVL 145
>gi|343505426|ref|ZP_08742998.1| transcription antitermination protein NusB [Vibrio ichthyoenteri
ATCC 700023]
gi|343508736|ref|ZP_08746048.1| transcription antitermination protein NusB [Vibrio scophthalmi LMG
19158]
gi|343513791|ref|ZP_08750886.1| transcription antitermination protein NusB [Vibrio sp. N418]
gi|342801410|gb|EGU36876.1| transcription antitermination protein NusB [Vibrio sp. N418]
gi|342806999|gb|EGU42202.1| transcription antitermination protein NusB [Vibrio scophthalmi LMG
19158]
gi|342807724|gb|EGU42904.1| transcription antitermination protein NusB [Vibrio ichthyoenteri
ATCC 700023]
Length = 155
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 153 VTTETVEEADELLRS----DEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDA 208
+T E V +E S DEEE L+AP V + R LL VV +
Sbjct: 26 ITKENVATIEEQFLSGGKYDEEEHHAAEPALTAPDTDV------AYFRDLLAGVVL---S 76
Query: 209 HVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
H + K+ P + + +D ++EL++L LAM E+T +++VINEA++LAK
Sbjct: 77 HTELDCKIRPYTSRPMQDLD-----LMELALLRLAMYEMTRREDVPYKVVINEAIELAKV 131
Query: 267 FCDGAAPRIINGCL 280
F + + +NG L
Sbjct: 132 FAAEDSHKFVNGVL 145
>gi|254994892|ref|ZP_05277082.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Mississippi]
gi|255003026|ref|ZP_05277990.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Puerto Rico]
gi|255004149|ref|ZP_05278950.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Virginia]
Length = 173
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPP-IWKVWKMDQPAGRILELSILHLAMSEITVV 249
L R +KLL ++ A ID + I K W MD+ ++ LSI+ + E+
Sbjct: 56 LGRVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRI--NLVSLSIMRAGICELLCF 113
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
T IVINE VD+A + A +N L
Sbjct: 114 STNESIVINEYVDIASYALEDAEVNFVNAIL 144
>gi|430747409|ref|YP_007206538.1| transcription antitermination factor NusB [Singulisphaera
acidiphila DSM 18658]
gi|430019129|gb|AGA30843.1| transcription antitermination factor NusB [Singulisphaera
acidiphila DSM 18658]
Length = 211
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 184 KLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAM 243
+L K L F L+ V A+ ID+++ + + W++D+ A ++ +IL L
Sbjct: 36 RLRGDKKLCEFAEALIAGV----QANQPRIDELISAVAENWRLDRMAA--IDRNILRLGA 89
Query: 244 SEITVVG-TRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
E+ ++ INE+++LAKR+ + R +NG L
Sbjct: 90 FELLYCADVPTKVAINESLELAKRYSTAQSSRFVNGIL 127
>gi|386391321|ref|ZP_10076102.1| transcription antitermination factor NusB [Desulfovibrio sp. U5L]
gi|385732199|gb|EIG52397.1| transcription antitermination factor NusB [Desulfovibrio sp. U5L]
Length = 167
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGA 271
+D ++ K WK+ + A +EL+IL LA+ EI ++ +NEA++LAKR+ D
Sbjct: 83 LDALIVKFSKNWKLSRIAK--VELTILRLALYEILHSSDIPLRVALNEAIELAKRYGDEN 140
Query: 272 APRIINGCL 280
+ ING L
Sbjct: 141 SRNFINGIL 149
>gi|406920541|gb|EKD58588.1| N utilization substance protein B [uncultured bacterium]
Length = 168
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH---QIVINEAVDLAKRFCD 269
ID ++ W ++Q I++ +IL L + E+ ++ INE+++LAK F
Sbjct: 63 IDALIEKCAPEWPLEQVT--IIDRNILRLGIYELMHGNYGEVPPKVAINESIELAKTFGG 120
Query: 270 GAAPRIINGCLRTFVRNLEGTANIEASKASKEV 302
++ R +NG L T R + + SK KEV
Sbjct: 121 ESSARFVNGVLGTIYREMGEPMKDDTSKKHKEV 153
>gi|386317702|ref|YP_006013866.1| transcription antitermination protein NusB [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|410495648|ref|YP_006905494.1| N utilization substance protein B [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
gi|417753619|ref|ZP_12401726.1| transcription antitermination factor NusB [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|417927755|ref|ZP_12571143.1| transcription antitermination factor NusB [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|323127989|gb|ADX25286.1| transcription antitermination protein NusB [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|333769348|gb|EGL46476.1| transcription antitermination factor NusB [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|340765629|gb|EGR88155.1| transcription antitermination factor NusB [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|410440808|emb|CCI63436.1| N utilization substance protein B homolog [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
Length = 149
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVG-TRHQI 255
L+ +V+ + H +D+ + K W +++ + + ++L L + EI T ++
Sbjct: 55 FLLNLVNGVNDHKKELDRTISEHLKTGWSLERLT--VTDKTLLRLGLFEIKYFNETPDRV 112
Query: 256 VINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NE +++AK++ D + + ING L FV
Sbjct: 113 ALNEIIEVAKKYSDETSAKFINGLLSQFV 141
>gi|239632001|ref|ZP_04675032.1| NusB antitermination factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239526466|gb|EEQ65467.1| NusB antitermination factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 139
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
W + ++ +P +L IL L + EI INEA++LAKR+ D + + +NG
Sbjct: 74 WTLNRLTKP-----DLIILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGI 128
Query: 280 LRTFVR 285
L F++
Sbjct: 129 LANFIQ 134
>gi|301066686|ref|YP_003788709.1| transcription termination factor [Lactobacillus casei str. Zhang]
gi|417980337|ref|ZP_12621017.1| transcription termination protein [Lactobacillus casei 12A]
gi|417983659|ref|ZP_12624295.1| transcription termination protein [Lactobacillus casei 21/1]
gi|300439093|gb|ADK18859.1| Transcription termination factor [Lactobacillus casei str. Zhang]
gi|410524660|gb|EKP99567.1| transcription termination protein [Lactobacillus casei 12A]
gi|410527928|gb|EKQ02790.1| transcription termination protein [Lactobacillus casei 21/1]
Length = 135
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
W + ++ +P +L IL L + EI INEA++LAKR+ D + + +NG
Sbjct: 70 WTLNRLTKP-----DLIILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQSAKFVNGI 124
Query: 280 LRTFVR 285
L F++
Sbjct: 125 LANFIQ 130
>gi|195977499|ref|YP_002122743.1| transcription antitermination protein NusB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|414563301|ref|YP_006042262.1| transcription antitermination protein NusB [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|195974204|gb|ACG61730.1| N utilization substance protein B-like NusB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|338846366|gb|AEJ24578.1| transcription antitermination protein NusB [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 139
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+ V+D +I K + W + ++ +++ ++L L + E+T+ T
Sbjct: 44 FLLNLVNGVMDHKAELDEVIKKNLKAGWSIERL-----TVVDKTMLRLGLFEMTLFEETP 98
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++ +NE +++AK++ D + + ING L FV +
Sbjct: 99 DRVALNEIIEIAKKYSDDTSAKFINGLLSQFVSD 132
>gi|258515792|ref|YP_003192014.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
gi|257779497|gb|ACV63391.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
Length = 156
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV- 249
++ F R+L+ + H+ ID+V+ I K W++D+ A ++ +++ +A+ EI
Sbjct: 41 IMEFARQLVFGTL----GHLKEIDRVISEISKGWRLDRIAN--VDKTLIRMALYEIFYED 94
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+ NEA++LAK F + + +NG + V+
Sbjct: 95 NIPLNVSANEAIELAKIFGGEESGKFVNGIIGKVVQ 130
>gi|354807033|ref|ZP_09040510.1| transcription antitermination factor NusB [Lactobacillus curvatus
CRL 705]
gi|354514538|gb|EHE86508.1| transcription antitermination factor NusB [Lactobacillus curvatus
CRL 705]
Length = 142
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W++ ++ +P IL L + + S ++ +NEA++LAK+F D A ING L
Sbjct: 81 WQLSRLAKPDLIILRLGLFEMQNS----TEAPDKVALNEALELAKQFTDDQAKGFINGVL 136
Query: 281 RTFV 284
FV
Sbjct: 137 SKFV 140
>gi|251796318|ref|YP_003011049.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
gi|247543944|gb|ACT00963.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
Length = 153
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 21/144 (14%)
Query: 158 VEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVV 217
+E D L+ E+ IEAE V + + R+L+ V + A ID+ +
Sbjct: 25 MEAVDMLMEEARSENEIEAE-------FVENDQTDNYVRELVNGVAENKAA----IDERL 73
Query: 218 PPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQI----VINEAVDLAKRFCDGAAP 273
W++D+ + ++ IL LA EI R+ + INEA++LAK F +
Sbjct: 74 QHYLTGWQVDRLSR--VDRQILRLAYFEIAY---RNDVPPKAAINEAIELAKHFGTEESG 128
Query: 274 RIINGCLRTFVRNLEG-TANIEAS 296
+ +NG L ++ EG TAN E++
Sbjct: 129 KFVNGVLGKLLKEREGETANSEST 152
>gi|323342016|ref|ZP_08082249.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|336066127|ref|YP_004560985.1| transcription antitermination protein NusB [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|322464441|gb|EFY09634.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|334296073|dbj|BAK31944.1| transcription antitermination protein NusB [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 134
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 199 LVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVIN 258
++ VV +A I + + W+ D+ +E +IL +A +E+ + +++N
Sbjct: 52 MLQVVMNVEARKDIYSRAIDHYLTKWRFDRLG--FIEQAILLMACAELELGYQDKVVIVN 109
Query: 259 EAVDLAKRFCDGAAPRIINGCL 280
EAV+LAK F D + ++ING +
Sbjct: 110 EAVNLAKDFSDEESYKLINGVI 131
>gi|345017595|ref|YP_004819948.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032938|gb|AEM78664.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
Length = 140
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H+ IDK + + W +++ ++L+IL ++ E+ I INEAV++AK++
Sbjct: 54 HLEEIDKEIERYSQNWALNRMPK--IDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYS 111
Query: 269 DGAAPRIINGCLRTFVRNL---EGTAN 292
+ ING L FVR+ EG +N
Sbjct: 112 TEDSHVFINGLLGAFVRDKGLEEGKSN 138
>gi|337288920|ref|YP_004628392.1| NusB antitermination factor [Thermodesulfobacterium sp. OPB45]
gi|334902658|gb|AEH23464.1| NusB antitermination factor [Thermodesulfobacterium geofontis
OPF15]
Length = 148
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
+L F ++L + V + + +II K +P W + +++ + + +IL LA+ E+
Sbjct: 42 ILDFAQELALGVDENIEFIDNIIKKYIPSSWPLERLN-----LTDKNILRLAIYEMFFRP 96
Query: 251 TRHQIV-INEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 302
+IV INEA++LAK + +P ING L + E +E K +++
Sbjct: 97 DIPEIVSINEAIELAKLYGTDDSPAFINGVLDNIYKK-EIKIKVEDHKGDEKI 148
>gi|326390202|ref|ZP_08211763.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|392941059|ref|ZP_10306703.1| transcription antitermination factor NusB [Thermoanaerobacter
siderophilus SR4]
gi|325993850|gb|EGD52281.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|392292809|gb|EIW01253.1| transcription antitermination factor NusB [Thermoanaerobacter
siderophilus SR4]
Length = 140
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H+ IDK + + W +++ ++L+IL ++ E+ I INEAV++AK++
Sbjct: 54 HLEEIDKEIERYSQNWALNRMPK--IDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYS 111
Query: 269 DGAAPRIINGCLRTFVRNL---EGTAN 292
+ ING L FVR+ EG +N
Sbjct: 112 TEDSHVFINGLLGAFVRDKGLEEGKSN 138
>gi|395786356|ref|ZP_10466083.1| transcription antitermination factor NusB [Bartonella tamiae Th239]
gi|423716751|ref|ZP_17690941.1| transcription antitermination factor NusB [Bartonella tamiae Th307]
gi|395422654|gb|EJF88850.1| transcription antitermination factor NusB [Bartonella tamiae Th239]
gi|395428825|gb|EJF94900.1| transcription antitermination factor NusB [Bartonella tamiae Th307]
Length = 159
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
+I K +P W + ++D IL + + + V +++NE VD+AK F DG
Sbjct: 85 LIRKRLPEDWPLSRIDSTLRAILRAGLWEIKSRKDVPVA----VIVNEYVDIAKAFFDGE 140
Query: 272 APRIINGCLRTFVRNL 287
PR++N L ++L
Sbjct: 141 EPRLVNAVLDRLAKDL 156
>gi|357634817|ref|ZP_09132695.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
gi|357583371|gb|EHJ48704.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
Length = 167
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI---TVVGTRHQIVINEAVDLAKRFCD 269
+D ++ K WK+ + A +EL+IL LA+ EI + + R + +NEA++LAKR+ D
Sbjct: 83 LDALIVKFSKNWKLSRIAK--VELTILRLALYEILHRSDIPLR--VALNEAIELAKRYGD 138
Query: 270 GAAPRIINGCL 280
+ ING L
Sbjct: 139 ENSRNFINGIL 149
>gi|293400615|ref|ZP_06644760.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|373452070|ref|ZP_09543988.1| transcription antitermination factor NusB [Eubacterium sp. 3_1_31]
gi|291305641|gb|EFE46885.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|371967502|gb|EHO84973.1| transcription antitermination factor NusB [Eubacterium sp. 3_1_31]
Length = 126
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+E +IL +A E+ + IVINEAV LAK++CD ++ING L
Sbjct: 77 VEKAILIMAACELDMEIAPKPIVINEAVTLAKKYCDEETYKLINGVL 123
>gi|86159160|ref|YP_465945.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
gi|197123232|ref|YP_002135183.1| NusB antitermination factor [Anaeromyxobacter sp. K]
gi|220918021|ref|YP_002493325.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
gi|119372275|sp|Q2ILH8.1|NUSB_ANADE RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|238689890|sp|B4UIM1.1|NUSB_ANASK RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772609|sp|B8JEW3.1|NUSB_ANAD2 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|85775671|gb|ABC82508.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
gi|196173081|gb|ACG74054.1| NusB antitermination factor [Anaeromyxobacter sp. K]
gi|219955875|gb|ACL66259.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
Length = 142
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H +D+ + + W++D+ A ++ ++L LA+ E+ ++VINEA++L K++
Sbjct: 58 HRRAVDEAIEAVSTNWRLDRMAK--VDRNVLRLAVFELLRTDVPVKVVINEAIELGKKYG 115
Query: 269 DGAAPRIINGCL 280
++ +NG L
Sbjct: 116 SESSGAFVNGVL 127
>gi|406909642|gb|EKD49851.1| N utilization substance protein B [uncultured bacterium]
Length = 141
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVV---PPIWKVWKMDQPAGRILELSILHLAMS-EITVV 249
F +++ ++D H IDK++ P W + ++ IL + + L + EI
Sbjct: 48 FIHQIIQGILD----HKTQIDKIIEKSAPEWPISQITTIDRNILRIGVFELKHTKEIPP- 102
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
++ INEA++LAK+F ++ + +NG L T + +E T
Sbjct: 103 ----KVAINEAIELAKKFGGESSGKFVNGVLGTIYKKMEKT 139
>gi|365157813|ref|ZP_09354058.1| transcription antitermination factor NusB [Bacillus smithii
7_3_47FAA]
gi|363622483|gb|EHL73642.1| transcription antitermination factor NusB [Bacillus smithii
7_3_47FAA]
Length = 131
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRF 267
H+ ID + + W D+ A ++ +IL LA+ E+ + INEAV++ KRF
Sbjct: 51 HLDEIDDCIKQHLENWSFDRLAK--VDRNILRLAVYEMKYREDVPANVAINEAVEIGKRF 108
Query: 268 CDGAAPRIINGCLRTFVRNLEG 289
D + + ING L ++LE
Sbjct: 109 GDERSGKFINGVLSRIKKSLEN 130
>gi|392948691|ref|ZP_10314294.1| Transcription termination protein NusB [Lactobacillus pentosus
KCA1]
gi|334880666|emb|CCB81432.1| N utilization substance protein B homolog (Protein nusB)
[Lactobacillus pentosus MP-10]
gi|339636873|emb|CCC15688.1| N utilization substance protein B homolog (protein NusB)
[Lactobacillus pentosus IG1]
gi|392435968|gb|EIW13889.1| Transcription termination protein NusB [Lactobacillus pentosus
KCA1]
Length = 139
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDGAAP 273
++ P + + W +D+ A +L IL +A E+ V ++ +NEA++LAK F D +
Sbjct: 66 QIQPYLSQKWSLDRLAKT--DLIILRMAFFELQFVDDVPTKVAVNEAIELAKAFSDDRSR 123
Query: 274 RIINGCLRTFVRN 286
+ ++G L V+N
Sbjct: 124 KFVSGVLGKVVKN 136
>gi|320160865|ref|YP_004174089.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
gi|319994718|dbj|BAJ63489.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
Length = 155
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
L F R++++ V+ H +D + W +DQ A +++ +IL +A+ E V
Sbjct: 42 LADFAREIVMGVL----PITHQLDVQIAKHAPEWPLDQVA--VIDRNILRIALWEFAVGQ 95
Query: 251 -TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
T ++ INEAV+LAK++ ++ R +NG L +
Sbjct: 96 CTPVKVAINEAVELAKKYGSDSSARFVNGVLGSL 129
>gi|421767033|ref|ZP_16203797.1| Transcription termination protein NusB [Lactococcus garvieae DCC43]
gi|407624492|gb|EKF51240.1| Transcription termination protein NusB [Lactococcus garvieae DCC43]
Length = 324
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E ++L L EI T + INEA++L K F D + + ING L ++
Sbjct: 272 IEQALLRLGTYEILFTETPDLVAINEAIELTKDFSDEKSSKFINGMLTNLIK 323
>gi|332668432|ref|YP_004451220.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100]
gi|332337246|gb|AEE54347.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100]
Length = 312
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 215 KVVPPIWKVWKMDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRFCDGAAP 273
KV+ P + W +++ A I+++ ++ +A+ E+ T ++ +NE V++AK + +
Sbjct: 225 KVIEPTLRNWDVERVA--IIDMILIKMALVELMTFKSIPSKVTLNEFVEIAKNYSTDKSK 282
Query: 274 RIINGCLRTFVRNLEGTANIEASKASKE 301
ING L ++ L +E K SKE
Sbjct: 283 DFINGILDRLLKQL-----LEEGKISKE 305
>gi|329894840|ref|ZP_08270640.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC3088]
gi|328922734|gb|EGG30068.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC3088]
Length = 425
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 237 SILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+IL + +I + T +NE+V+LAK+ A ++INGCLR F+R
Sbjct: 75 AILLTGLYQIEYMRTPDHAAVNESVNLAKKLKKTWAIKLINGCLRRFLR 123
>gi|422721064|ref|ZP_16777669.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0017]
gi|315031736|gb|EFT43668.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0017]
Length = 156
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIV-INEAVDLAKRFCDGAAPRIINGCLRT 282
W M + A +++ IL LA+ E+ V IV +NEAV+L+K++ D + + +NG L
Sbjct: 90 WSMQRLAK--IDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRKFVNGVLSN 147
Query: 283 FVRNLEGTA 291
++ ++ A
Sbjct: 148 VMKEIDSEA 156
>gi|379742070|ref|YP_005334039.1| transcription antitermination protein NusB [Vibrio cholerae IEC224]
gi|418335275|ref|ZP_12944186.1| transcription antitermination factor NusB [Vibrio cholerae HC-06A1]
gi|418350570|ref|ZP_12955301.1| transcription antitermination factor NusB [Vibrio cholerae HC-43A1]
gi|421329482|ref|ZP_15779992.1| transcription antitermination factor NusB [Vibrio cholerae
CP1042(15)]
gi|424027901|ref|ZP_17767503.1| transcription antitermination factor NusB [Vibrio cholerae HC-69A1]
gi|443535998|ref|ZP_21101869.1| transcription antitermination factor NusB [Vibrio cholerae HC-80A1]
gi|356416651|gb|EHH70276.1| transcription antitermination factor NusB [Vibrio cholerae HC-06A1]
gi|356445066|gb|EHH97875.1| transcription antitermination factor NusB [Vibrio cholerae HC-43A1]
gi|378795580|gb|AFC59051.1| transcription antitermination protein NusB [Vibrio cholerae IEC224]
gi|395928016|gb|EJH38779.1| transcription antitermination factor NusB [Vibrio cholerae
CP1042(15)]
gi|408878524|gb|EKM17525.1| transcription antitermination factor NusB [Vibrio cholerae HC-69A1]
gi|443460888|gb|ELT31968.1| transcription antitermination factor NusB [Vibrio cholerae HC-80A1]
Length = 152
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 233 ILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
++EL++L LAM E+T +++VINEA++LAK F + + +NG L
Sbjct: 93 MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 141
>gi|227510480|ref|ZP_03940529.1| transcription antitermination protein NusB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513489|ref|ZP_03943538.1| transcription antitermination protein NusB [Lactobacillus buchneri
ATCC 11577]
gi|227524631|ref|ZP_03954680.1| transcription antitermination protein NusB [Lactobacillus hilgardii
ATCC 8290]
gi|227083362|gb|EEI18674.1| transcription antitermination protein NusB [Lactobacillus buchneri
ATCC 11577]
gi|227088115|gb|EEI23427.1| transcription antitermination protein NusB [Lactobacillus hilgardii
ATCC 8290]
gi|227190132|gb|EEI70199.1| transcription antitermination protein NusB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 137
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
++ +L VVD + ++I+K + W + ++ + +L IL +A+ E+ V
Sbjct: 45 KYLDELTTGVVDHKEELDNLIEKYLKSGWSINRIAKT-----DLIILEIALYEMLHVDDL 99
Query: 253 -HQIVINEAVDLAKRFCDGAAPRIINGCL 280
++ INEA++LAK++ D + + +NG L
Sbjct: 100 PAKVSINEAIELAKKYSDDRSRKFVNGIL 128
>gi|88801237|ref|ZP_01116776.1| transcription antitermination protein NusB [Reinekea blandensis
MED297]
gi|88776023|gb|EAR07259.1| transcription antitermination protein NusB [Reinekea sp. MED297]
Length = 151
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 167 SDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI-IDKVVPPIWKVWK 225
+D+ + IEAE L+ + K + + A + D+HV ID+ + + V
Sbjct: 28 ADQSVTQIEAEFLTDNDVSKFDKDYFSEVLRGVAASKSELDSHVDKHIDRALKDLTPV-- 85
Query: 226 MDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
EL+IL + E + + ++++INE V+L+K F A R +NG L
Sbjct: 86 ---------ELAILRMGAYEFLHRIDVPYKVIINEGVELSKTFGANEAHRFVNGVLDKLA 136
Query: 285 RNLEGTANIEASKAS 299
++L + ++A KA+
Sbjct: 137 QDLR-SPEVQAGKAT 150
>gi|435853294|ref|YP_007314613.1| transcription antitermination factor NusB [Halobacteroides halobius
DSM 5150]
gi|433669705|gb|AGB40520.1| transcription antitermination factor NusB [Halobacteroides halobius
DSM 5150]
Length = 142
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 211 HIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV---VGTRHQIVINEAVDLAKRF 267
H +D++V WKM++ G++ E +I+ LA+ E+ + T + I+EA++LAK F
Sbjct: 61 HELDQLVDDNISNWKMER-MGKV-ERNIIRLALYEMLYEEEIPT--AVSIDEAIELAKSF 116
Query: 268 CDGAAPRIINGCLRTFVRNLE 288
D A + +NG L + L+
Sbjct: 117 SDQKAAKFVNGILGKLAKKLD 137
>gi|295106070|emb|CBL03613.1| transcription antitermination factor NusB [Gordonibacter pamelaeae
7-10-1-b]
Length = 160
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 200 VAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVIN 258
A+V +AH IDK + + W + + I++ SIL LA E+ V + IN
Sbjct: 50 TALVRGVEAHRVAIDKHLAATSENWALARMP--IVDRSILRLATYEMMYVDDVPTSVTIN 107
Query: 259 EAVDLAKRF-CDGAAPRIINGCLRTFVRNLE 288
EAV+LAK F + +PR +NG L + L+
Sbjct: 108 EAVELAKDFGGEDESPRFVNGVLGRIAKILD 138
>gi|304407046|ref|ZP_07388700.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
gi|304344033|gb|EFM09873.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
Length = 156
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
FTR L+ V+++ A ID+++ W++D+ + ++ IL LA EI R
Sbjct: 55 FTRGLVFGVIERKTA----IDQMLQQYLTGWQVDRLSR--VDRQILRLAAYEILF---RD 105
Query: 254 QI----VINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
+ INEA++LAK F + + +NG L + L
Sbjct: 106 DVPPKAAINEAIELAKHFGTDESGKFVNGVLGKLISTL 143
>gi|170017709|ref|YP_001728628.1| transcription termination factor [Leuconostoc citreum KM20]
gi|414596054|ref|ZP_11445630.1| N utilization substance protein B homolog [Leuconostoc citreum LBAE
E16]
gi|421877407|ref|ZP_16308954.1| N utilization substance protein B homolog [Leuconostoc citreum LBAE
C10]
gi|421878831|ref|ZP_16310308.1| N utilization substance protein B homolog [Leuconostoc citreum LBAE
C11]
gi|169804566|gb|ACA83184.1| Transcription termination factor [Leuconostoc citreum KM20]
gi|372556834|emb|CCF25074.1| N utilization substance protein B homolog [Leuconostoc citreum LBAE
C10]
gi|390447317|emb|CCF26428.1| N utilization substance protein B homolog [Leuconostoc citreum LBAE
C11]
gi|390482987|emb|CCF27691.1| N utilization substance protein B homolog [Leuconostoc citreum LBAE
E16]
Length = 140
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 235 ELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
+L IL LA+ E++ +++ I+EA+ LAK F D + +NG L+ F +E T
Sbjct: 81 DLVILRLAIYELSQQLVPYKVAIDEALILAKTFADEDDRKFVNGVLKNFAPKVEAT 136
>gi|78357481|ref|YP_388930.1| NusB antitermination factor [Desulfovibrio alaskensis G20]
gi|119390767|sp|Q30YL1.1|NUSB_DESDG RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|78219886|gb|ABB39235.1| NusB antitermination factor [Desulfovibrio alaskensis G20]
Length = 154
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
+D+++ + W++++ G+I EL+IL LA+ E+ ++ INE ++L+K+F D
Sbjct: 72 LDEIITRFAQNWRVER-IGKI-ELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGDDK 129
Query: 272 APRIINGCLRTFVRNLE 288
+ ING L + LE
Sbjct: 130 SRNFINGILDAAAKALE 146
>gi|258627344|ref|ZP_05722128.1| N utilization substance protein B [Vibrio mimicus VM603]
gi|262166342|ref|ZP_06034079.1| transcription termination protein NusB [Vibrio mimicus VM223]
gi|449143617|ref|ZP_21774440.1| transcription termination protein NusB [Vibrio mimicus CAIM 602]
gi|258580382|gb|EEW05347.1| N utilization substance protein B [Vibrio mimicus VM603]
gi|262026058|gb|EEY44726.1| transcription termination protein NusB [Vibrio mimicus VM223]
gi|449080615|gb|EMB51526.1| transcription termination protein NusB [Vibrio mimicus CAIM 602]
Length = 152
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 233 ILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
++EL++L LAM E+T +++VINEA++LAK F + + +NG L
Sbjct: 93 MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 141
>gi|365540553|ref|ZP_09365728.1| transcription antitermination protein NusB [Vibrio ordalii ATCC
33509]
Length = 151
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 233 ILELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
++EL++L LAM E+T +++VINEA++LAK F + + +NG L
Sbjct: 93 MMELALLRLAMYEMTRRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 141
>gi|383754041|ref|YP_005432944.1| putative N utilization substance protein B [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381366093|dbj|BAL82921.1| putative N utilization substance protein B [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 142
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 196 RKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH-- 253
R+ + +V ++ ID ++ K WK+++ A ++ +I LA EI +
Sbjct: 51 REFIKTLVHGTRVNLSAIDSLIAASSKDWKIERMA--TVDRNITRLATYEIRFAEEKLVP 108
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
I INEAV+LAK+F + R +NG L ++
Sbjct: 109 NIAINEAVELAKKFGTDDSSRYVNGILGAMMK 140
>gi|407717884|ref|YP_006795289.1| transcription antitermination protein NusB [Leuconostoc carnosum
JB16]
gi|407241640|gb|AFT81290.1| transcription antitermination protein NusB [Leuconostoc carnosum
JB16]
Length = 138
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 235 ELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+L IL LA+ E+T +++ I+EA+ LAK F D + +NG L+ FV
Sbjct: 81 DLVILRLAIYELTNQLVPYKVAIDEALILAKTFADEDDRKFVNGMLKNFV 130
>gi|336123493|ref|YP_004565541.1| N utilization substance protein B [Vibrio anguillarum 775]
gi|335341216|gb|AEH32499.1| N utilization substance protein B [Vibrio anguillarum 775]
Length = 155
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 10/89 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWK-VWKMDQPAGRILELSILHLAMSEITVVG-T 251
+ R LL VV +H + K+ P + + + +D ++EL++L LAM E+T
Sbjct: 65 YFRDLLTGVVL---SHTELDSKLRPFVSRPMQDLD-----MMELALLRLAMYEMTRRDDV 116
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCL 280
+++VINEA++LAK F + + +NG L
Sbjct: 117 PYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>gi|39996792|ref|NP_952743.1| transcription antitermination factor NusB [Geobacter sulfurreducens
PCA]
gi|409912211|ref|YP_006890676.1| transcription antitermination factor NusB [Geobacter sulfurreducens
KN400]
gi|81702305|sp|Q74CI1.1|NUSB_GEOSL RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|39983680|gb|AAR35070.1| transcription antitermination factor NusB [Geobacter sulfurreducens
PCA]
gi|298505803|gb|ADI84526.1| transcription antitermination factor NusB [Geobacter sulfurreducens
KN400]
Length = 138
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITV-VGTRHQIVINEAVDLAK 265
H ID + K W + GR+ ++LSIL +AM E+ + INEA+++AK
Sbjct: 57 HRQEIDTAITGASKNWSI----GRMARVDLSILRMAMYELLFRSDIPKNVTINEAIEVAK 112
Query: 266 RFCDGAAPRIINGCL 280
+F +P ING L
Sbjct: 113 KFGTEDSPAFINGIL 127
>gi|357637576|ref|ZP_09135451.1| transcription antitermination factor NusB [Streptococcus macacae
NCTC 11558]
gi|357586030|gb|EHJ53233.1| transcription antitermination factor NusB [Streptococcus macacae
NCTC 11558]
Length = 139
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F L+ V D I K + W V ++ +++ ++LHL + EI T
Sbjct: 51 FLLDLMKGVTDYQTELDEDISKHLKSGWTVSRL-----TLIDKTLLHLGLYEIKHHNETP 105
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286
++ +NE ++++K++ D + + +NG L F+ N
Sbjct: 106 ERVALNEIIEISKKYSDETSSKFVNGVLSQFITN 139
>gi|258620990|ref|ZP_05716024.1| N utilization substance protein B [Vibrio mimicus VM573]
gi|261211383|ref|ZP_05925671.1| transcription termination protein NusB [Vibrio sp. RC341]
gi|262170766|ref|ZP_06038444.1| transcription termination protein NusB [Vibrio mimicus MB-451]
gi|262404600|ref|ZP_06081155.1| transcription termination protein NusB [Vibrio sp. RC586]
gi|424807478|ref|ZP_18232886.1| transcription antitermination protein NusB [Vibrio mimicus SX-4]
gi|258586378|gb|EEW11093.1| N utilization substance protein B [Vibrio mimicus VM573]
gi|260839338|gb|EEX65964.1| transcription termination protein NusB [Vibrio sp. RC341]
gi|261891842|gb|EEY37828.1| transcription termination protein NusB [Vibrio mimicus MB-451]
gi|262349632|gb|EEY98770.1| transcription termination protein NusB [Vibrio sp. RC586]
gi|342325420|gb|EGU21200.1| transcription antitermination protein NusB [Vibrio mimicus SX-4]
Length = 156
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 233 ILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
++EL++L LAM E+T +++VINEA++LAK F + + +NG L
Sbjct: 97 MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>gi|229524269|ref|ZP_04413674.1| transcription termination protein NusB [Vibrio cholerae bv.
albensis VL426]
gi|229337850|gb|EEO02867.1| transcription termination protein NusB [Vibrio cholerae bv.
albensis VL426]
Length = 156
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 233 ILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
++EL++L LAM E+T +++VINEA++LAK F + + +NG L
Sbjct: 97 MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>gi|403386580|ref|ZP_10928637.1| transcription antitermination protein NusB [Clostridium sp. JC122]
Length = 133
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 199 LVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVI 257
++ ++ + ++ +I++ + WK+D+ + + LSIL LA+ EI +++ +
Sbjct: 47 IIRILKNVNDNLDLINETISNNLVKWKIDRISK--INLSILKLAVCEILFEEEIPNKVSL 104
Query: 258 NEAVDLAKRFCDGAAPRIINGCLRTFVR 285
NEA++LAK++ + + +NG L + ++
Sbjct: 105 NEAIELAKKYGEDNSASFVNGVLNSIIK 132
>gi|194016988|ref|ZP_03055601.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
7061]
gi|194011594|gb|EDW21163.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
7061]
Length = 131
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAG---RILELSILHLAMSEITVVG 250
F +L+ V+++ D +D ++ WK+D+ A IL LS+ + E V
Sbjct: 40 FFEELVFGVLEQKDK----LDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVS 95
Query: 251 TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ +NEA++LAK F D A + +NG L +L+
Sbjct: 96 ----VSMNEAIELAKLFGDDKASKFVNGVLSNIKNDLK 129
>gi|154502455|ref|ZP_02039515.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
gi|153796851|gb|EDN79271.1| transcription antitermination factor NusB [Ruminococcus gnavus ATCC
29149]
Length = 132
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
+ +K L AVV+K + I+++ WK +M++ ++L+IL LA+ EI
Sbjct: 46 YIQKKLEAVVEKLEEIDAILNEKATG-WKTSRMNK-----VDLAILRLAVYEIKWDDDVP 99
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
++ INEAV+LAK+F P +NG L
Sbjct: 100 VKVAINEAVELAKKFSGEEGPAFVNGVL 127
>gi|343520828|ref|ZP_08757797.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 393 str. F0440]
gi|343397786|gb|EGV10320.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 393 str. F0440]
Length = 434
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 161 ADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPI 220
A E+L ++E++ +L+ K + S L +F R+++ ++ +II K+
Sbjct: 5 AVEILCEIKDENSNSTNLLNKSTKNI-SDLDSKFLREIVYGTLENRIYLDYIIKKLCK-- 61
Query: 221 WKVWKMDQPAGRILELSILHLA-MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
++ K + IL +SI + M +I +INEAV+L K F +NG
Sbjct: 62 LRIKKFNPYILNILRISIYQIIFMDKIPEFA-----IINEAVNLTKVFKLKKFSSFVNGS 116
Query: 280 LRTFVRNLEGTANIEAS 296
LR F+RN E IEA
Sbjct: 117 LRNFLRNKEDFIKIEAD 133
>gi|15642265|ref|NP_231898.1| transcription antitermination protein NusB [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121586175|ref|ZP_01675966.1| N utilization substance protein B [Vibrio cholerae 2740-80]
gi|121729760|ref|ZP_01682199.1| N utilization substance protein B [Vibrio cholerae V52]
gi|147673228|ref|YP_001217781.1| transcription antitermination protein NusB [Vibrio cholerae O395]
gi|153217373|ref|ZP_01951124.1| N utilization substance protein B [Vibrio cholerae 1587]
gi|153803017|ref|ZP_01957603.1| N utilization substance protein B [Vibrio cholerae MZO-3]
gi|153824256|ref|ZP_01976923.1| N utilization substance protein B [Vibrio cholerae B33]
gi|153828248|ref|ZP_01980915.1| N utilization substance protein B [Vibrio cholerae 623-39]
gi|227082391|ref|YP_002810942.1| transcription antitermination protein NusB [Vibrio cholerae M66-2]
gi|227118713|ref|YP_002820609.1| N utilization substance protein B [Vibrio cholerae O395]
gi|229507660|ref|ZP_04397165.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
gi|229512145|ref|ZP_04401624.1| transcription termination protein NusB [Vibrio cholerae B33]
gi|229513908|ref|ZP_04403370.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
gi|229519280|ref|ZP_04408723.1| transcription termination protein NusB [Vibrio cholerae RC9]
gi|229522212|ref|ZP_04411629.1| transcription termination protein NusB [Vibrio cholerae TM
11079-80]
gi|229528732|ref|ZP_04418122.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
gi|229607164|ref|YP_002877812.1| transcription antitermination protein NusB [Vibrio cholerae
MJ-1236]
gi|254286062|ref|ZP_04961023.1| N utilization substance protein B [Vibrio cholerae AM-19226]
gi|254849396|ref|ZP_05238746.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
gi|255747039|ref|ZP_05420984.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
gi|262161417|ref|ZP_06030527.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
gi|262168266|ref|ZP_06035963.1| transcription termination protein NusB [Vibrio cholerae RC27]
gi|262190236|ref|ZP_06048510.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
gi|297580910|ref|ZP_06942835.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
gi|298500359|ref|ZP_07010164.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
gi|360036142|ref|YP_004937905.1| transcription antitermination protein NusB [Vibrio cholerae O1 str.
2010EL-1786]
gi|384425229|ref|YP_005634587.1| transcription termination protein NusB [Vibrio cholerae LMA3984-4]
gi|417814293|ref|ZP_12460946.1| transcription antitermination factor NusB [Vibrio cholerae HC-49A2]
gi|417818030|ref|ZP_12464659.1| transcription antitermination factor NusB [Vibrio cholerae HCUF01]
gi|417821597|ref|ZP_12468211.1| transcription antitermination factor NusB [Vibrio cholerae HE39]
gi|417825500|ref|ZP_12472088.1| transcription antitermination factor NusB [Vibrio cholerae HE48]
gi|418338884|ref|ZP_12947778.1| transcription antitermination factor NusB [Vibrio cholerae HC-23A1]
gi|418346808|ref|ZP_12951566.1| transcription antitermination factor NusB [Vibrio cholerae HC-28A1]
gi|418355359|ref|ZP_12958078.1| transcription antitermination factor NusB [Vibrio cholerae HC-61A1]
gi|419827224|ref|ZP_14350723.1| transcription antitermination factor NusB [Vibrio cholerae
CP1033(6)]
gi|419830715|ref|ZP_14354200.1| transcription antitermination factor NusB [Vibrio cholerae HC-1A2]
gi|419834398|ref|ZP_14357853.1| transcription antitermination factor NusB [Vibrio cholerae HC-61A2]
gi|419837973|ref|ZP_14361411.1| transcription antitermination factor NusB [Vibrio cholerae HC-46B1]
gi|421317914|ref|ZP_15768482.1| transcription antitermination factor NusB [Vibrio cholerae
CP1032(5)]
gi|421322022|ref|ZP_15772575.1| transcription antitermination factor NusB [Vibrio cholerae
CP1038(11)]
gi|421325824|ref|ZP_15776348.1| transcription antitermination factor NusB [Vibrio cholerae
CP1041(14)]
gi|421333438|ref|ZP_15783915.1| transcription antitermination factor NusB [Vibrio cholerae
CP1046(19)]
gi|421336980|ref|ZP_15787441.1| transcription antitermination factor NusB [Vibrio cholerae
CP1048(21)]
gi|421340408|ref|ZP_15790840.1| transcription antitermination factor NusB [Vibrio cholerae HC-20A2]
gi|421344607|ref|ZP_15795010.1| transcription antitermination factor NusB [Vibrio cholerae HC-43B1]
gi|421348170|ref|ZP_15798547.1| transcription antitermination factor NusB [Vibrio cholerae HC-46A1]
gi|421351985|ref|ZP_15802350.1| transcription antitermination factor NusB [Vibrio cholerae HE-25]
gi|421354965|ref|ZP_15805297.1| transcription antitermination factor NusB [Vibrio cholerae HE-45]
gi|422308206|ref|ZP_16395359.1| transcription antitermination factor NusB [Vibrio cholerae
CP1035(8)]
gi|422897363|ref|ZP_16934807.1| transcription antitermination factor NusB [Vibrio cholerae HC-40A1]
gi|422903561|ref|ZP_16938531.1| transcription antitermination factor NusB [Vibrio cholerae HC-48A1]
gi|422907446|ref|ZP_16942244.1| transcription antitermination factor NusB [Vibrio cholerae HC-70A1]
gi|422911104|ref|ZP_16945732.1| transcription antitermination factor NusB [Vibrio cholerae HE-09]
gi|422914290|ref|ZP_16948795.1| transcription antitermination factor NusB [Vibrio cholerae HFU-02]
gi|422918104|ref|ZP_16952422.1| transcription antitermination factor NusB [Vibrio cholerae HC-02A1]
gi|422923569|ref|ZP_16956716.1| transcription antitermination factor NusB [Vibrio cholerae BJG-01]
gi|422926494|ref|ZP_16959507.1| transcription antitermination factor NusB [Vibrio cholerae HC-38A1]
gi|423145816|ref|ZP_17133410.1| transcription antitermination factor NusB [Vibrio cholerae HC-19A1]
gi|423150492|ref|ZP_17137806.1| transcription antitermination factor NusB [Vibrio cholerae HC-21A1]
gi|423154311|ref|ZP_17141492.1| transcription antitermination factor NusB [Vibrio cholerae HC-22A1]
gi|423157394|ref|ZP_17144487.1| transcription antitermination factor NusB [Vibrio cholerae HC-32A1]
gi|423160965|ref|ZP_17147905.1| transcription antitermination factor NusB [Vibrio cholerae HC-33A2]
gi|423165792|ref|ZP_17152516.1| transcription antitermination factor NusB [Vibrio cholerae HC-48B2]
gi|423731814|ref|ZP_17705117.1| transcription antitermination factor NusB [Vibrio cholerae HC-17A1]
gi|423735930|ref|ZP_17709122.1| transcription antitermination factor NusB [Vibrio cholerae HC-41B1]
gi|423769097|ref|ZP_17713235.1| transcription antitermination factor NusB [Vibrio cholerae HC-50A2]
gi|423823006|ref|ZP_17717016.1| transcription antitermination factor NusB [Vibrio cholerae HC-55C2]
gi|423856971|ref|ZP_17720823.1| transcription antitermination factor NusB [Vibrio cholerae HC-59A1]
gi|423883599|ref|ZP_17724410.1| transcription antitermination factor NusB [Vibrio cholerae HC-60A1]
gi|423895959|ref|ZP_17727438.1| transcription antitermination factor NusB [Vibrio cholerae HC-62A1]
gi|423931491|ref|ZP_17731831.1| transcription antitermination factor NusB [Vibrio cholerae HC-77A1]
gi|423957572|ref|ZP_17735315.1| transcription antitermination factor NusB [Vibrio cholerae HE-40]
gi|423985552|ref|ZP_17738866.1| transcription antitermination factor NusB [Vibrio cholerae HE-46]
gi|423998529|ref|ZP_17741781.1| transcription antitermination factor NusB [Vibrio cholerae HC-02C1]
gi|424003244|ref|ZP_17746319.1| transcription antitermination factor NusB [Vibrio cholerae HC-17A2]
gi|424007035|ref|ZP_17750005.1| transcription antitermination factor NusB [Vibrio cholerae HC-37A1]
gi|424010268|ref|ZP_17753202.1| transcription antitermination factor NusB [Vibrio cholerae HC-44C1]
gi|424017426|ref|ZP_17757255.1| transcription antitermination factor NusB [Vibrio cholerae HC-55B2]
gi|424020351|ref|ZP_17760134.1| transcription antitermination factor NusB [Vibrio cholerae HC-59B1]
gi|424025015|ref|ZP_17764665.1| transcription antitermination factor NusB [Vibrio cholerae HC-62B1]
gi|424587181|ref|ZP_18026759.1| transcription antitermination factor NusB [Vibrio cholerae
CP1030(3)]
gi|424591973|ref|ZP_18031397.1| transcription antitermination factor NusB [Vibrio cholerae
CP1037(10)]
gi|424595833|ref|ZP_18035152.1| transcription antitermination factor NusB [Vibrio cholerae
CP1040(13)]
gi|424599746|ref|ZP_18038924.1| transcription antitermination factor NusB [Vibrio Cholerae
CP1044(17)]
gi|424602507|ref|ZP_18041647.1| transcription antitermination factor NusB [Vibrio cholerae
CP1047(20)]
gi|424607440|ref|ZP_18046381.1| transcription antitermination factor NusB [Vibrio cholerae
CP1050(23)]
gi|424611258|ref|ZP_18050097.1| transcription antitermination factor NusB [Vibrio cholerae HC-39A1]
gi|424614073|ref|ZP_18052858.1| transcription antitermination factor NusB [Vibrio cholerae HC-41A1]
gi|424618047|ref|ZP_18056718.1| transcription antitermination factor NusB [Vibrio cholerae HC-42A1]
gi|424622831|ref|ZP_18061336.1| transcription antitermination factor NusB [Vibrio cholerae HC-47A1]
gi|424625725|ref|ZP_18064186.1| transcription antitermination factor NusB [Vibrio cholerae HC-50A1]
gi|424630213|ref|ZP_18068497.1| transcription antitermination factor NusB [Vibrio cholerae HC-51A1]
gi|424634257|ref|ZP_18072357.1| transcription antitermination factor NusB [Vibrio cholerae HC-52A1]
gi|424637334|ref|ZP_18075342.1| transcription antitermination factor NusB [Vibrio cholerae HC-55A1]
gi|424641242|ref|ZP_18079125.1| transcription antitermination factor NusB [Vibrio cholerae HC-56A1]
gi|424645794|ref|ZP_18083529.1| transcription antitermination factor NusB [Vibrio cholerae HC-56A2]
gi|424649310|ref|ZP_18086973.1| transcription antitermination factor NusB [Vibrio cholerae HC-57A1]
gi|424653565|ref|ZP_18090945.1| transcription antitermination factor NusB [Vibrio cholerae HC-57A2]
gi|424657384|ref|ZP_18094669.1| transcription antitermination factor NusB [Vibrio cholerae HC-81A2]
gi|424660769|ref|ZP_18098016.1| transcription antitermination factor NusB [Vibrio cholerae HE-16]
gi|429885232|ref|ZP_19366829.1| Transcription termination protein NusB [Vibrio cholerae PS15]
gi|440710505|ref|ZP_20891153.1| transcription termination protein NusB [Vibrio cholerae 4260B]
gi|443504612|ref|ZP_21071568.1| transcription antitermination factor NusB [Vibrio cholerae HC-64A1]
gi|443508513|ref|ZP_21075274.1| transcription antitermination factor NusB [Vibrio cholerae HC-65A1]
gi|443512357|ref|ZP_21078992.1| transcription antitermination factor NusB [Vibrio cholerae HC-67A1]
gi|443515911|ref|ZP_21082421.1| transcription antitermination factor NusB [Vibrio cholerae HC-68A1]
gi|443519705|ref|ZP_21086098.1| transcription antitermination factor NusB [Vibrio cholerae HC-71A1]
gi|443524596|ref|ZP_21090806.1| transcription antitermination factor NusB [Vibrio cholerae HC-72A2]
gi|443528227|ref|ZP_21094271.1| transcription antitermination factor NusB [Vibrio cholerae HC-78A1]
gi|443532190|ref|ZP_21098204.1| transcription antitermination factor NusB [Vibrio cholerae HC-7A1]
gi|443539531|ref|ZP_21105385.1| transcription antitermination factor NusB [Vibrio cholerae HC-81A1]
gi|449055277|ref|ZP_21733945.1| Transcription termination protein NusB [Vibrio cholerae O1 str.
Inaba G4222]
gi|22095970|sp|Q9KPU5.1|NUSB_VIBCH RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|172047603|sp|A5F5Z6.1|NUSB_VIBC3 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|254772665|sp|C3LQ39.1|NUSB_VIBCM RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|9656829|gb|AAF95411.1| N utilization substance protein B [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549587|gb|EAX59611.1| N utilization substance protein B [Vibrio cholerae 2740-80]
gi|121628511|gb|EAX60997.1| N utilization substance protein B [Vibrio cholerae V52]
gi|124113619|gb|EAY32439.1| N utilization substance protein B [Vibrio cholerae 1587]
gi|124121460|gb|EAY40203.1| N utilization substance protein B [Vibrio cholerae MZO-3]
gi|126518222|gb|EAZ75447.1| N utilization substance protein B [Vibrio cholerae B33]
gi|146315111|gb|ABQ19650.1| N utilization substance protein B [Vibrio cholerae O395]
gi|148876337|gb|EDL74472.1| N utilization substance protein B [Vibrio cholerae 623-39]
gi|150423972|gb|EDN15912.1| N utilization substance protein B [Vibrio cholerae AM-19226]
gi|227010279|gb|ACP06491.1| N utilization substance protein B [Vibrio cholerae M66-2]
gi|227014163|gb|ACP10373.1| N utilization substance protein B [Vibrio cholerae O395]
gi|229332506|gb|EEN97992.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
gi|229341137|gb|EEO06142.1| transcription termination protein NusB [Vibrio cholerae TM
11079-80]
gi|229343969|gb|EEO08944.1| transcription termination protein NusB [Vibrio cholerae RC9]
gi|229349089|gb|EEO14046.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
gi|229352110|gb|EEO17051.1| transcription termination protein NusB [Vibrio cholerae B33]
gi|229355165|gb|EEO20086.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
gi|229369819|gb|ACQ60242.1| transcription termination protein NusB [Vibrio cholerae MJ-1236]
gi|254845101|gb|EET23515.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
gi|255735441|gb|EET90841.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
gi|262023158|gb|EEY41862.1| transcription termination protein NusB [Vibrio cholerae RC27]
gi|262028728|gb|EEY47382.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
gi|262033881|gb|EEY52347.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
gi|297534736|gb|EFH73572.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
gi|297541052|gb|EFH77106.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
gi|327484782|gb|AEA79189.1| Transcription termination protein NusB [Vibrio cholerae LMA3984-4]
gi|340036779|gb|EGQ97755.1| transcription antitermination factor NusB [Vibrio cholerae HC-49A2]
gi|340037753|gb|EGQ98728.1| transcription antitermination factor NusB [Vibrio cholerae HCUF01]
gi|340039228|gb|EGR00203.1| transcription antitermination factor NusB [Vibrio cholerae HE39]
gi|340046985|gb|EGR07915.1| transcription antitermination factor NusB [Vibrio cholerae HE48]
gi|341620501|gb|EGS46272.1| transcription antitermination factor NusB [Vibrio cholerae HC-48A1]
gi|341620637|gb|EGS46404.1| transcription antitermination factor NusB [Vibrio cholerae HC-70A1]
gi|341621246|gb|EGS46993.1| transcription antitermination factor NusB [Vibrio cholerae HC-40A1]
gi|341632476|gb|EGS57342.1| transcription antitermination factor NusB [Vibrio cholerae HE-09]
gi|341636532|gb|EGS61227.1| transcription antitermination factor NusB [Vibrio cholerae HFU-02]
gi|341636986|gb|EGS61680.1| transcription antitermination factor NusB [Vibrio cholerae HC-02A1]
gi|341643858|gb|EGS68120.1| transcription antitermination factor NusB [Vibrio cholerae BJG-01]
gi|341645884|gb|EGS70008.1| transcription antitermination factor NusB [Vibrio cholerae HC-38A1]
gi|356417814|gb|EHH71427.1| transcription antitermination factor NusB [Vibrio cholerae HC-21A1]
gi|356422654|gb|EHH76128.1| transcription antitermination factor NusB [Vibrio cholerae HC-19A1]
gi|356428003|gb|EHH81234.1| transcription antitermination factor NusB [Vibrio cholerae HC-22A1]
gi|356430526|gb|EHH83735.1| transcription antitermination factor NusB [Vibrio cholerae HC-23A1]
gi|356431792|gb|EHH84992.1| transcription antitermination factor NusB [Vibrio cholerae HC-28A1]
gi|356439284|gb|EHH92271.1| transcription antitermination factor NusB [Vibrio cholerae HC-32A1]
gi|356444242|gb|EHH97054.1| transcription antitermination factor NusB [Vibrio cholerae HC-33A2]
gi|356450293|gb|EHI03023.1| transcription antitermination factor NusB [Vibrio cholerae HC-48B2]
gi|356451857|gb|EHI04536.1| transcription antitermination factor NusB [Vibrio cholerae HC-61A1]
gi|356647296|gb|AET27351.1| transcription antitermination protein NusB [Vibrio cholerae O1 str.
2010EL-1786]
gi|395916172|gb|EJH27002.1| transcription antitermination factor NusB [Vibrio cholerae
CP1032(5)]
gi|395917662|gb|EJH28490.1| transcription antitermination factor NusB [Vibrio cholerae
CP1041(14)]
gi|395919016|gb|EJH29840.1| transcription antitermination factor NusB [Vibrio cholerae
CP1038(11)]
gi|395928840|gb|EJH39593.1| transcription antitermination factor NusB [Vibrio cholerae
CP1046(19)]
gi|395932079|gb|EJH42823.1| transcription antitermination factor NusB [Vibrio cholerae
CP1048(21)]
gi|395939691|gb|EJH50373.1| transcription antitermination factor NusB [Vibrio cholerae HC-20A2]
gi|395940687|gb|EJH51368.1| transcription antitermination factor NusB [Vibrio cholerae HC-43B1]
gi|395942749|gb|EJH53425.1| transcription antitermination factor NusB [Vibrio cholerae HC-46A1]
gi|395952430|gb|EJH63044.1| transcription antitermination factor NusB [Vibrio cholerae HE-25]
gi|395954090|gb|EJH64703.1| transcription antitermination factor NusB [Vibrio cholerae HE-45]
gi|395958332|gb|EJH68828.1| transcription antitermination factor NusB [Vibrio cholerae HC-56A2]
gi|395958742|gb|EJH69213.1| transcription antitermination factor NusB [Vibrio cholerae HC-57A2]
gi|395961422|gb|EJH71750.1| transcription antitermination factor NusB [Vibrio cholerae HC-42A1]
gi|395970370|gb|EJH80141.1| transcription antitermination factor NusB [Vibrio cholerae HC-47A1]
gi|395972529|gb|EJH82119.1| transcription antitermination factor NusB [Vibrio cholerae
CP1030(3)]
gi|395975185|gb|EJH84682.1| transcription antitermination factor NusB [Vibrio cholerae
CP1047(20)]
gi|408006609|gb|EKG44747.1| transcription antitermination factor NusB [Vibrio cholerae HC-39A1]
gi|408011666|gb|EKG49473.1| transcription antitermination factor NusB [Vibrio cholerae HC-50A1]
gi|408011686|gb|EKG49491.1| transcription antitermination factor NusB [Vibrio cholerae HC-41A1]
gi|408017620|gb|EKG55111.1| transcription antitermination factor NusB [Vibrio cholerae HC-52A1]
gi|408022727|gb|EKG59922.1| transcription antitermination factor NusB [Vibrio cholerae HC-56A1]
gi|408023122|gb|EKG60302.1| transcription antitermination factor NusB [Vibrio cholerae HC-55A1]
gi|408029986|gb|EKG66667.1| transcription antitermination factor NusB [Vibrio cholerae
CP1037(10)]
gi|408031202|gb|EKG67839.1| transcription antitermination factor NusB [Vibrio cholerae
CP1040(13)]
gi|408032026|gb|EKG68625.1| transcription antitermination factor NusB [Vibrio cholerae HC-57A1]
gi|408041103|gb|EKG77243.1| transcription antitermination factor NusB [Vibrio Cholerae
CP1044(17)]
gi|408042431|gb|EKG78483.1| transcription antitermination factor NusB [Vibrio cholerae
CP1050(23)]
gi|408050142|gb|EKG85315.1| transcription antitermination factor NusB [Vibrio cholerae HE-16]
gi|408052505|gb|EKG87544.1| transcription antitermination factor NusB [Vibrio cholerae HC-81A2]
gi|408054181|gb|EKG89167.1| transcription antitermination factor NusB [Vibrio cholerae HC-51A1]
gi|408608014|gb|EKK81417.1| transcription antitermination factor NusB [Vibrio cholerae
CP1033(6)]
gi|408618071|gb|EKK91160.1| transcription antitermination factor NusB [Vibrio cholerae
CP1035(8)]
gi|408620488|gb|EKK93500.1| transcription antitermination factor NusB [Vibrio cholerae HC-1A2]
gi|408622746|gb|EKK95716.1| transcription antitermination factor NusB [Vibrio cholerae HC-17A1]
gi|408629356|gb|EKL02055.1| transcription antitermination factor NusB [Vibrio cholerae HC-41B1]
gi|408633374|gb|EKL05735.1| transcription antitermination factor NusB [Vibrio cholerae HC-50A2]
gi|408634982|gb|EKL07217.1| transcription antitermination factor NusB [Vibrio cholerae HC-55C2]
gi|408640318|gb|EKL12114.1| transcription antitermination factor NusB [Vibrio cholerae HC-59A1]
gi|408640665|gb|EKL12453.1| transcription antitermination factor NusB [Vibrio cholerae HC-60A1]
gi|408649220|gb|EKL20537.1| transcription antitermination factor NusB [Vibrio cholerae HC-61A2]
gi|408653718|gb|EKL24873.1| transcription antitermination factor NusB [Vibrio cholerae HC-77A1]
gi|408654661|gb|EKL25796.1| transcription antitermination factor NusB [Vibrio cholerae HC-62A1]
gi|408656641|gb|EKL27735.1| transcription antitermination factor NusB [Vibrio cholerae HE-40]
gi|408663669|gb|EKL34531.1| transcription antitermination factor NusB [Vibrio cholerae HE-46]
gi|408844889|gb|EKL85012.1| transcription antitermination factor NusB [Vibrio cholerae HC-37A1]
gi|408845778|gb|EKL85893.1| transcription antitermination factor NusB [Vibrio cholerae HC-17A2]
gi|408852428|gb|EKL92256.1| transcription antitermination factor NusB [Vibrio cholerae HC-02C1]
gi|408856521|gb|EKL96216.1| transcription antitermination factor NusB [Vibrio cholerae HC-46B1]
gi|408859611|gb|EKL99268.1| transcription antitermination factor NusB [Vibrio cholerae HC-55B2]
gi|408863298|gb|EKM02788.1| transcription antitermination factor NusB [Vibrio cholerae HC-44C1]
gi|408866928|gb|EKM06299.1| transcription antitermination factor NusB [Vibrio cholerae HC-59B1]
gi|408869917|gb|EKM09204.1| transcription antitermination factor NusB [Vibrio cholerae HC-62B1]
gi|429228028|gb|EKY33980.1| Transcription termination protein NusB [Vibrio cholerae PS15]
gi|439973834|gb|ELP50038.1| transcription termination protein NusB [Vibrio cholerae 4260B]
gi|443431083|gb|ELS73637.1| transcription antitermination factor NusB [Vibrio cholerae HC-64A1]
gi|443434921|gb|ELS81067.1| transcription antitermination factor NusB [Vibrio cholerae HC-65A1]
gi|443438745|gb|ELS88463.1| transcription antitermination factor NusB [Vibrio cholerae HC-67A1]
gi|443442848|gb|ELS96151.1| transcription antitermination factor NusB [Vibrio cholerae HC-68A1]
gi|443446704|gb|ELT03363.1| transcription antitermination factor NusB [Vibrio cholerae HC-71A1]
gi|443449454|gb|ELT09748.1| transcription antitermination factor NusB [Vibrio cholerae HC-72A2]
gi|443453485|gb|ELT17308.1| transcription antitermination factor NusB [Vibrio cholerae HC-78A1]
gi|443457580|gb|ELT24977.1| transcription antitermination factor NusB [Vibrio cholerae HC-7A1]
gi|443465631|gb|ELT40291.1| transcription antitermination factor NusB [Vibrio cholerae HC-81A1]
gi|448265319|gb|EMB02554.1| Transcription termination protein NusB [Vibrio cholerae O1 str.
Inaba G4222]
Length = 156
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 233 ILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
++EL++L LAM E+T +++VINEA++LAK F + + +NG L
Sbjct: 97 MMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVL 145
>gi|381393494|ref|ZP_09919216.1| N utilization substance protein B [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330841|dbj|GAB54349.1| N utilization substance protein B [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 140
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 20/107 (18%)
Query: 188 SKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI------LELSILHL 241
+K+ L + + +L+ V V +DK+ P GR+ +E SI+ L
Sbjct: 41 TKVDLSYMQDILIGVT----QDVQSLDKLYKPYL---------GRLPEELDPIEKSIMRL 87
Query: 242 AMSEI-TVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
A E+ + T +++VINEA++LAK F + + ING L V+ L
Sbjct: 88 ATVELRDRLDTPYKVVINEAIELAKTFGAEESHKFINGALDKAVKTL 134
>gi|453051197|gb|EME98711.1| transcription antitermination protein NusB [Streptomyces
mobaraensis NBRC 13819 = DSM 40847]
Length = 142
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQ-PAGRILELSILHLAMSE-ITVVGTRHQIVINE 259
+V+ + HV ID+++ W +D+ PA + +I+ L E I GT + I+E
Sbjct: 52 LVEGYAEHVARIDELIETYAVDWDLDRMPAA---DRNIVRLGAYELIWEDGTPDAVAIDE 108
Query: 260 AVDLAKRFCDGAAPRIINGCLRTF 283
AV LAK F +P ING L F
Sbjct: 109 AVQLAKEFSTDESPAFINGLLGRF 132
>gi|402846864|ref|ZP_10895173.1| transcription antitermination factor NusB [Porphyromonas sp. oral
taxon 279 str. F0450]
gi|402267556|gb|EJU16951.1| transcription antitermination factor NusB [Porphyromonas sp. oral
taxon 279 str. F0450]
Length = 350
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 149 GGP-PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWD 207
GP V + VE+ LR EE++AI+ ++ A RF R L + K++
Sbjct: 214 NGPVEVVKDFVEKT---LRKSEEDTAIDDDIRPAFKDEDDE----RFARLLFRQTLLKYN 266
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF 267
+ +I+ V+ W ++ +L L++ ++ T QI INE V+LAK +
Sbjct: 267 DQMKLIEPVLSAGWSSERLADIDALLLNLAVTEFLY--FPLIPT--QITINEYVELAKHY 322
Query: 268 CDGAAPRIINGCLRTFVRNLEGTANI 293
+ +NG L R L+ I
Sbjct: 323 STNHSASFVNGVLDALARKLKEEGKI 348
>gi|29375559|ref|NP_814713.1| transcription antitermination protein NusB [Enterococcus faecalis
V583]
gi|256852630|ref|ZP_05558001.1| transcription antitermination protein NusB [Enterococcus faecalis
T8]
gi|430358862|ref|ZP_19425622.1| transcription antitermination protein NusB [Enterococcus faecalis
OG1X]
gi|39931895|sp|Q836W8.1|NUSB_ENTFA RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|29343020|gb|AAO80783.1| N utilization substance protein B [Enterococcus faecalis V583]
gi|256711975|gb|EEU27012.1| transcription antitermination protein NusB [Enterococcus faecalis
T8]
gi|429513687|gb|ELA03266.1| transcription antitermination protein NusB [Enterococcus faecalis
OG1X]
Length = 154
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIV-INEAVDLAKRFCDGAAPRIINGCLRT 282
W M + A +++ IL LA+ E+ V IV +NEAV+L+K++ D + + +NG L
Sbjct: 88 WSMQRLAK--IDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRKFVNGVLSN 145
Query: 283 FVRNLEGTA 291
++ ++ A
Sbjct: 146 VMKEIDSEA 154
>gi|227517900|ref|ZP_03947949.1| transcription antitermination protein NusB [Enterococcus faecalis
TX0104]
gi|227555087|ref|ZP_03985134.1| transcription antitermination protein NusB [Enterococcus faecalis
HH22]
gi|229546824|ref|ZP_04435549.1| transcription antitermination protein NusB [Enterococcus faecalis
TX1322]
gi|229548918|ref|ZP_04437643.1| transcription antitermination protein NusB [Enterococcus faecalis
ATCC 29200]
gi|293382527|ref|ZP_06628461.1| transcription antitermination factor NusB [Enterococcus faecalis
R712]
gi|293387873|ref|ZP_06632412.1| transcription antitermination factor NusB [Enterococcus faecalis
S613]
gi|307268058|ref|ZP_07549446.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4248]
gi|307271988|ref|ZP_07553255.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0855]
gi|307275459|ref|ZP_07556601.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2134]
gi|307278973|ref|ZP_07560032.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0860]
gi|307289420|ref|ZP_07569374.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0109]
gi|307290060|ref|ZP_07569984.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0411]
gi|312900448|ref|ZP_07759755.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0470]
gi|312904540|ref|ZP_07763698.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0635]
gi|312906870|ref|ZP_07765867.1| transcription antitermination factor NusB [Enterococcus faecalis
DAPTO 512]
gi|312952750|ref|ZP_07771612.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0102]
gi|312978875|ref|ZP_07790601.1| transcription antitermination factor NusB [Enterococcus faecalis
DAPTO 516]
gi|384512675|ref|YP_005707768.1| transcription antitermination factor NusB [Enterococcus faecalis
OG1RF]
gi|422685556|ref|ZP_16743772.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4000]
gi|422689665|ref|ZP_16747769.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0630]
gi|422692268|ref|ZP_16750290.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0031]
gi|422694585|ref|ZP_16752576.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4244]
gi|422698196|ref|ZP_16756116.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1346]
gi|422699537|ref|ZP_16757401.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1342]
gi|422703325|ref|ZP_16761147.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1302]
gi|422705587|ref|ZP_16763383.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0043]
gi|422711780|ref|ZP_16768707.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0027]
gi|422713457|ref|ZP_16770207.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0309A]
gi|422717516|ref|ZP_16774200.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0309B]
gi|422722931|ref|ZP_16779480.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2137]
gi|422727502|ref|ZP_16783943.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0312]
gi|422729968|ref|ZP_16786363.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0012]
gi|422730904|ref|ZP_16787285.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0645]
gi|422735215|ref|ZP_16791489.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1341]
gi|422739802|ref|ZP_16794968.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2141]
gi|424671109|ref|ZP_18108124.1| transcription antitermination factor NusB [Enterococcus faecalis
599]
gi|424679128|ref|ZP_18115959.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV103]
gi|424682280|ref|ZP_18119055.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV116]
gi|424684077|ref|ZP_18120805.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV129]
gi|424686856|ref|ZP_18123518.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV25]
gi|424690075|ref|ZP_18126611.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV31]
gi|424692266|ref|ZP_18128769.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV37]
gi|424695682|ref|ZP_18132061.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV41]
gi|424700531|ref|ZP_18136715.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV62]
gi|424705559|ref|ZP_18141589.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV63]
gi|424712443|ref|ZP_18144626.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV65]
gi|424716245|ref|ZP_18145558.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV68]
gi|424721654|ref|ZP_18150736.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV72]
gi|424723683|ref|ZP_18152638.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV73]
gi|424727111|ref|ZP_18155753.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV81]
gi|424735102|ref|ZP_18163575.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV85]
gi|424751801|ref|ZP_18179822.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV93]
gi|424757199|ref|ZP_18184953.1| transcription antitermination factor NusB [Enterococcus faecalis
R508]
gi|227074654|gb|EEI12617.1| transcription antitermination protein NusB [Enterococcus faecalis
TX0104]
gi|227175755|gb|EEI56727.1| transcription antitermination protein NusB [Enterococcus faecalis
HH22]
gi|229305939|gb|EEN71935.1| transcription antitermination protein NusB [Enterococcus faecalis
ATCC 29200]
gi|229307989|gb|EEN73976.1| transcription antitermination protein NusB [Enterococcus faecalis
TX1322]
gi|291080075|gb|EFE17439.1| transcription antitermination factor NusB [Enterococcus faecalis
R712]
gi|291082720|gb|EFE19683.1| transcription antitermination factor NusB [Enterococcus faecalis
S613]
gi|306498902|gb|EFM68396.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0411]
gi|306499675|gb|EFM69038.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0109]
gi|306504360|gb|EFM73571.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0860]
gi|306507847|gb|EFM76975.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2134]
gi|306511335|gb|EFM80338.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0855]
gi|306515699|gb|EFM84226.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4248]
gi|310627124|gb|EFQ10407.1| transcription antitermination factor NusB [Enterococcus faecalis
DAPTO 512]
gi|310629266|gb|EFQ12549.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0102]
gi|310632053|gb|EFQ15336.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0635]
gi|311288312|gb|EFQ66868.1| transcription antitermination factor NusB [Enterococcus faecalis
DAPTO 516]
gi|311292424|gb|EFQ70980.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0470]
gi|315026954|gb|EFT38886.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2137]
gi|315029667|gb|EFT41599.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4000]
gi|315034207|gb|EFT46139.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0027]
gi|315144361|gb|EFT88377.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2141]
gi|315147929|gb|EFT91945.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4244]
gi|315149499|gb|EFT93515.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0012]
gi|315153054|gb|EFT97070.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0031]
gi|315156826|gb|EFU00843.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0043]
gi|315157613|gb|EFU01630.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0312]
gi|315162959|gb|EFU06976.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0645]
gi|315165157|gb|EFU09174.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1302]
gi|315168057|gb|EFU12074.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1341]
gi|315171915|gb|EFU15932.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1342]
gi|315173308|gb|EFU17325.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1346]
gi|315574278|gb|EFU86469.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0309B]
gi|315577406|gb|EFU89597.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0630]
gi|315581567|gb|EFU93758.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0309A]
gi|327534564|gb|AEA93398.1| transcription antitermination factor NusB [Enterococcus faecalis
OG1RF]
gi|402349330|gb|EJU84281.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV116]
gi|402349409|gb|EJU84359.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV103]
gi|402359669|gb|EJU94294.1| transcription antitermination factor NusB [Enterococcus faecalis
599]
gi|402363013|gb|EJU97523.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV129]
gi|402365209|gb|EJU99635.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV31]
gi|402366563|gb|EJV00933.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV25]
gi|402373622|gb|EJV07693.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV62]
gi|402378657|gb|EJV12495.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV37]
gi|402378983|gb|EJV12804.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV63]
gi|402379431|gb|EJV13234.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV41]
gi|402380937|gb|EJV14676.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV65]
gi|402388438|gb|EJV21877.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV68]
gi|402390821|gb|EJV24142.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV72]
gi|402397392|gb|EJV30410.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV73]
gi|402397485|gb|EJV30498.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV81]
gi|402404719|gb|EJV37335.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV85]
gi|402405297|gb|EJV37894.1| transcription antitermination factor NusB [Enterococcus faecalis
ERV93]
gi|402407548|gb|EJV40073.1| transcription antitermination factor NusB [Enterococcus faecalis
R508]
Length = 156
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIV-INEAVDLAKRFCDGAAPRIINGCLRT 282
W M + A +++ IL LA+ E+ V IV +NEAV+L+K++ D + + +NG L
Sbjct: 90 WSMQRLAK--IDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRKFVNGVLSN 147
Query: 283 FVRNLEGTA 291
++ ++ A
Sbjct: 148 VMKEIDSEA 156
>gi|342217374|ref|ZP_08710021.1| putative transcription antitermination factor NusB [Peptoniphilus
sp. oral taxon 375 str. F0436]
gi|341588264|gb|EGS31664.1| putative transcription antitermination factor NusB [Peptoniphilus
sp. oral taxon 375 str. F0436]
Length = 129
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV---VGTRHQIVINEAVDLAK 265
H ID+V+ W + + A ++L+I+ LA EI + T+ + INEAV+LAK
Sbjct: 42 HREEIDQVIDSTLVGWDIHRLAK--VDLAIIRLASYEIFYCPEIPTK--VSINEAVELAK 97
Query: 266 RFCDGAAPRIINGCLRTFVRNLE 288
+F + R ING L + ++ E
Sbjct: 98 KFSTDDSSRFINGILGSVIKKYE 120
>gi|289578288|ref|YP_003476915.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
gi|297544568|ref|YP_003676870.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289528001|gb|ADD02353.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
gi|296842343|gb|ADH60859.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 140
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H+ IDK + + W +++ ++L+IL ++ E+ I INEAV++AK++
Sbjct: 54 HLEEIDKEIEKYSQNWALNRMPR--IDLAILRCSIYEMIYGNIPVNISINEAVEIAKKYS 111
Query: 269 DGAAPRIINGCLRTFVRN 286
+ ING L FVR+
Sbjct: 112 TEDSHVFINGLLGAFVRD 129
>gi|357049934|ref|ZP_09111148.1| N utilization substance protein B [Enterococcus saccharolyticus
30_1]
gi|355382417|gb|EHG29515.1| N utilization substance protein B [Enterococcus saccharolyticus
30_1]
Length = 150
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGAAPRIINGC 279
WK+ ++ + ++++IL +A+ E+ V +++ +NEA++LAK F D + + +NG
Sbjct: 83 WKIQRLSK-----MDVTILRIALYEMVYVDNVPNRVALNEAIELAKTFSDDQSRKFVNGI 137
Query: 280 LRTFVRNLEG 289
L +E
Sbjct: 138 LSNVNNEIES 147
>gi|257792277|ref|YP_003182883.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
gi|257476174|gb|ACV56494.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
Length = 195
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG 250
L + KL++ V ++H ID + + W + + I++ SIL LA E+ +
Sbjct: 45 LPEYALKLVLGV----ESHRCAIDNHLAATSENWSLARMP--IVDRSILRLATFEMMYID 98
Query: 251 -TRHQIVINEAVDLAKRF-CDGAAPRIINGCLRTFVRNLEGTANIEA-SKASKEVPSE 305
+ INEAV+LAK F + + R +NG L + LEG + A S+ EVP++
Sbjct: 99 DVPTSVTINEAVELAKDFGGEDESHRFVNGILGRIAKMLEGEEDEGAESEGDPEVPAD 156
>gi|452943836|ref|YP_007500001.1| NusB antitermination factor [Hydrogenobaculum sp. HO]
gi|452882254|gb|AGG14958.1| NusB antitermination factor [Hydrogenobaculum sp. HO]
Length = 139
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 167 SDEEESAIEAEV--LSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVW 224
S E S+I E+ +S PP L + ++K + + K++ ++ IDK + + W
Sbjct: 22 SGGEISSIAQEIINMSEPP-------LKKDSKKYALLITKKFEENIENIDKKIASYLENW 74
Query: 225 KMDQPAGRILELSILHLAMSEITVVGTRHQI-VINEAVDLAKRFCDGAAPRIINGCLRTF 283
+D +E +IL A +E + + I I + V++A + + P ING L
Sbjct: 75 NLDDLGS--IEKAILRTAFTEFLYIKPKKNIQAIIDYVEIANNYGNKKTPSFINGILSRL 132
Query: 284 VRNL 287
+++
Sbjct: 133 SKDI 136
>gi|299537762|ref|ZP_07051051.1| N utilization substance protein B-like protein [Lysinibacillus
fusiformis ZC1]
gi|424735516|ref|ZP_18163979.1| N utilization substance protein B-like protein [Lysinibacillus
fusiformis ZB2]
gi|298726741|gb|EFI67327.1| N utilization substance protein B-like protein [Lysinibacillus
fusiformis ZC1]
gi|422950173|gb|EKU44542.1| N utilization substance protein B-like protein [Lysinibacillus
fusiformis ZB2]
Length = 127
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVV-GTRHQIVIN 258
+V+ H+ ID + + W + R+ +E ++L LA+ E+ + T ++V+N
Sbjct: 43 IVNGTAEHLEEIDATLEQHLEKWSL----ARLPKIERTVLRLAVYELLYMPETPKRVVLN 98
Query: 259 EAVDLAKRFCDGAAPRIINGCLRTF 283
EA++L K F D ++ + +NG L F
Sbjct: 99 EAIELCKTFGDDSSSKFVNGVLSKF 123
>gi|347522062|ref|YP_004779633.1| N utilization substance protein B [Lactococcus garvieae ATCC 49156]
gi|385833447|ref|YP_005871222.1| N utilization substance protein B [Lactococcus garvieae Lg2]
gi|343180630|dbj|BAK58969.1| N utilization substance protein B [Lactococcus garvieae ATCC 49156]
gi|343182600|dbj|BAK60938.1| N utilization substance protein B [Lactococcus garvieae Lg2]
Length = 324
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+E ++L L EI T + INE+++LAK F D + + ING L ++
Sbjct: 272 VEQALLRLGAYEILFTETPDLVAINESIELAKDFSDEKSSKFINGMLTNLIK 323
>gi|255971431|ref|ZP_05422017.1| antitermination protein NusB [Enterococcus faecalis T1]
gi|255974044|ref|ZP_05424630.1| antitermination protein NusB [Enterococcus faecalis T2]
gi|256617900|ref|ZP_05474746.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
gi|256761733|ref|ZP_05502313.1| antitermination protein NusB [Enterococcus faecalis T3]
gi|256957069|ref|ZP_05561240.1| antitermination protein NusB [Enterococcus faecalis DS5]
gi|256960159|ref|ZP_05564330.1| antitermination protein NusB [Enterococcus faecalis Merz96]
gi|256962598|ref|ZP_05566769.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
gi|257077865|ref|ZP_05572226.1| antitermination protein NusB [Enterococcus faecalis JH1]
gi|257081230|ref|ZP_05575591.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
gi|257083886|ref|ZP_05578247.1| antitermination protein NusB [Enterococcus faecalis Fly1]
gi|257086336|ref|ZP_05580697.1| antitermination protein NusB [Enterococcus faecalis D6]
gi|257089386|ref|ZP_05583747.1| antitermination protein nusB [Enterococcus faecalis CH188]
gi|257415595|ref|ZP_05592589.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG]
gi|257418568|ref|ZP_05595562.1| transcription antitermination protein nusB [Enterococcus faecalis
T11]
gi|257421226|ref|ZP_05598216.1| transcription antitermination protein nusB [Enterococcus faecalis
X98]
gi|294780567|ref|ZP_06745930.1| transcription antitermination factor NusB [Enterococcus faecalis
PC1.1]
gi|300859628|ref|ZP_07105716.1| transcription antitermination factor NusB [Enterococcus faecalis
TUSoD Ef11]
gi|384518084|ref|YP_005705389.1| transcription antitermination factor NusB [Enterococcus faecalis
62]
gi|397699371|ref|YP_006537159.1| transcription antitermination factor NusB [Enterococcus faecalis
D32]
gi|421513327|ref|ZP_15960104.1| Transcription termination protein NusB [Enterococcus faecalis ATCC
29212]
gi|428766484|ref|YP_007152595.1| transcription antitermination protein NusB [Enterococcus faecalis
str. Symbioflor 1]
gi|430368013|ref|ZP_19427995.1| transcription antitermination protein NusB [Enterococcus faecalis
M7]
gi|255962449|gb|EET94925.1| antitermination protein NusB [Enterococcus faecalis T1]
gi|255966916|gb|EET97538.1| antitermination protein NusB [Enterococcus faecalis T2]
gi|256597427|gb|EEU16603.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
gi|256682984|gb|EEU22679.1| antitermination protein NusB [Enterococcus faecalis T3]
gi|256947565|gb|EEU64197.1| antitermination protein NusB [Enterococcus faecalis DS5]
gi|256950655|gb|EEU67287.1| antitermination protein NusB [Enterococcus faecalis Merz96]
gi|256953094|gb|EEU69726.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
gi|256985895|gb|EEU73197.1| antitermination protein NusB [Enterococcus faecalis JH1]
gi|256989260|gb|EEU76562.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
gi|256991916|gb|EEU79218.1| antitermination protein NusB [Enterococcus faecalis Fly1]
gi|256994366|gb|EEU81668.1| antitermination protein NusB [Enterococcus faecalis D6]
gi|256998198|gb|EEU84718.1| antitermination protein nusB [Enterococcus faecalis CH188]
gi|257157423|gb|EEU87383.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG]
gi|257160396|gb|EEU90356.1| transcription antitermination protein nusB [Enterococcus faecalis
T11]
gi|257163050|gb|EEU93010.1| transcription antitermination protein nusB [Enterococcus faecalis
X98]
gi|294452394|gb|EFG20833.1| transcription antitermination factor NusB [Enterococcus faecalis
PC1.1]
gi|295113845|emb|CBL32482.1| transcription antitermination factor NusB [Enterococcus sp. 7L76]
gi|300850446|gb|EFK78195.1| transcription antitermination factor NusB [Enterococcus faecalis
TUSoD Ef11]
gi|323480217|gb|ADX79656.1| transcription antitermination factor NusB [Enterococcus faecalis
62]
gi|397336010|gb|AFO43682.1| transcription antitermination factor NusB [Enterococcus faecalis
D32]
gi|401673581|gb|EJS79962.1| Transcription termination protein NusB [Enterococcus faecalis ATCC
29212]
gi|427184657|emb|CCO71881.1| transcription antitermination protein NusB [Enterococcus faecalis
str. Symbioflor 1]
gi|429516518|gb|ELA06008.1| transcription antitermination protein NusB [Enterococcus faecalis
M7]
Length = 150
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIV-INEAVDLAKRFCDGAAPRIINGCLRT 282
W M + A +++ IL LA+ E+ V IV +NEAV+L+K++ D + + +NG L
Sbjct: 84 WSMQRLAK--IDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRKFVNGVLSN 141
Query: 283 FVRNLEGTA 291
++ ++ A
Sbjct: 142 VMKEIDSEA 150
>gi|221195846|ref|ZP_03568899.1| transcription antitermination factor NusB [Atopobium rimae ATCC
49626]
gi|221184320|gb|EEE16714.1| transcription antitermination factor NusB [Atopobium rimae ATCC
49626]
Length = 161
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 221 WKVWKMDQPAGRILELSILH-LAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
W V +M +L+LS+ L +SE+ V I INE ++L+ +C +PR ING
Sbjct: 73 WSVSRMPSVDRNLLQLSLYEMLEVSEVDV-----SITINEVIELSHAYCGDESPRFINGI 127
Query: 280 L 280
L
Sbjct: 128 L 128
>gi|218132225|ref|ZP_03461029.1| hypothetical protein BACPEC_00082 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992884|gb|EEC58884.1| transcription antitermination factor NusB [[Bacteroides]
pectinophilus ATCC 43243]
Length = 135
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGA 271
IDK + + + WK+++ G++ EL+IL LA+ E+ + INEAV+LAK +
Sbjct: 65 IDKKLESVSEGWKLER-MGKV-ELTILRLAVYELLYDDDIPANVAINEAVELAKVYGGDT 122
Query: 272 APRIINGCL 280
+P +NG L
Sbjct: 123 SPAFVNGIL 131
>gi|257869052|ref|ZP_05648705.1| antitermination protein NusB [Enterococcus gallinarum EG2]
gi|257803216|gb|EEV32038.1| antitermination protein NusB [Enterococcus gallinarum EG2]
Length = 150
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGAAPRIINGC 279
WK+ ++ + ++++IL +A+ E+ V +++ +NEA++LAK F D + + +NG
Sbjct: 83 WKIQRLSK-----MDVTILRIALYEMVYVDNVPNRVALNEAIELAKTFSDDQSRKFVNGI 137
Query: 280 L 280
L
Sbjct: 138 L 138
>gi|340749572|ref|ZP_08686425.1| transcription antitermination factor NusB [Fusobacterium mortiferum
ATCC 9817]
gi|229421402|gb|EEO36449.1| transcription antitermination factor NusB [Fusobacterium mortiferum
ATCC 9817]
Length = 132
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L F +K + + + D + I+ + W ++ +E ++L ++ E+ T
Sbjct: 44 LAFIKKYMNGIAENNDRILETINNNITG----WSFERIGN--VEKALLRCSVYELLCETT 97
Query: 252 RHQIVINEAVDLAKRFCDGAAPRIINGCL 280
H+IV+NE V+LAK + D +NG L
Sbjct: 98 PHEIVVNEVVELAKLYGDEKTSEFVNGVL 126
>gi|302392489|ref|YP_003828309.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
gi|302204566|gb|ADL13244.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
Length = 138
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRFCDGAAPRIINGC 279
WKV +M G++ + +IL LA+ EI V ++ I+EAV+LAK F +P+ ING
Sbjct: 74 WKVSRM----GKV-DRNILRLAIYEILYVDDIPIEVSIDEAVELAKEFIADKSPKFINGV 128
Query: 280 L 280
L
Sbjct: 129 L 129
>gi|375089654|ref|ZP_09735979.1| transcription antitermination factor NusB [Facklamia languida CCUG
37842]
gi|374566501|gb|EHR37740.1| transcription antitermination factor NusB [Facklamia languida CCUG
37842]
Length = 148
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ ++L+ VV+ +A +I + W + ++ ++L+IL LA E+ V
Sbjct: 54 YLQRLVKGVVENKEALDALISDYLTEDWALERIAS-----IDLTILRLAFYELVYVDEEE 108
Query: 254 ---QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++ +NEA++L+K F D + + I+G L ++ ++
Sbjct: 109 VPAKVKVNEAIELSKTFSDDKSRKFISGVLAQYLDQVQ 146
>gi|336434229|ref|ZP_08614029.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 2_1_58FAA]
gi|336014272|gb|EGN44128.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 132
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
+ +K L AV++K + I+++ WK +M++ ++L+IL LA+ EI
Sbjct: 46 YIQKKLEAVIEKLEEIDAILNEKATG-WKTSRMNK-----VDLAILRLAVYEIKWDDDVP 99
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
++ INEAV+LAK+F P +NG L
Sbjct: 100 VKVAINEAVELAKKFSGEEGPAFVNGVL 127
>gi|390935027|ref|YP_006392532.1| NusB antitermination factor [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570528|gb|AFK86933.1| NusB antitermination factor [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 139
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
ID+ + K W +++ A ++L+I+ + EI + INEAV++AK++
Sbjct: 58 IDEKIKKYLKNWDINRIAK--IDLAIMRCSFYEILYSADIPSSVSINEAVEIAKKYSTEK 115
Query: 272 APRIINGCLRTFVRNLEG 289
+P ING L VR++ G
Sbjct: 116 SPAFINGILGNLVRDIIG 133
>gi|256425201|ref|YP_003125854.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256040109|gb|ACU63653.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 309
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGT 251
L + R+LL+ V+DK + + +I P + W ++ A +++ ++ + + E T
Sbjct: 205 LEYARELLLTVLDKKEYCLELI----KPKLQNWDPERIAA--VDMLLMEMGVCEFLYFPT 258
Query: 252 -RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKE 301
++ INE +DLAK + + + +NG L +++L+ I+ +K+
Sbjct: 259 IPTKVTINEYIDLAKAYSTPQSGQFVNGILDNILKDLDQANQIKKVDRTKK 309
>gi|339634928|ref|YP_004726569.1| transcription antitermination protein NusB [Weissella koreensis
KACC 15510]
gi|420160926|ref|ZP_14667697.1| transcription antitermination protein NusB [Weissella koreensis
KCTC 3621]
gi|338854724|gb|AEJ23890.1| transcription antitermination protein NusB [Weissella koreensis
KACC 15510]
gi|394745676|gb|EJF34494.1| transcription antitermination protein NusB [Weissella koreensis
KCTC 3621]
Length = 138
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W +D+ +++L I+ +A+ E ++ +NEA++LAK F D ++ + ING L
Sbjct: 78 WTLDRL--NLIDLEIMRIAIYEANQGDVPTKVAVNEALNLAKEFTDDSSAKFINGIL 132
>gi|301059426|ref|ZP_07200347.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
gi|300446462|gb|EFK10306.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
Length = 1011
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTR 252
F+R L+ V + I+D+V+ K W++++ A L+ SIL LA E+ +
Sbjct: 36 FSRDLVSGVCQR----KTILDRVIGRSSKHWRLERMAR--LDRSILRLATYEMLYLEDIP 89
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++ ++EAV+L KRF + R ING L L+
Sbjct: 90 PRVSLDEAVELGKRFGSEDSGRYINGVLDNIFNTLD 125
>gi|295090868|emb|CBK76975.1| transcription antitermination factor NusB [Clostridium cf.
saccharolyticum K10]
Length = 147
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGA 271
+D + K W + G++ EL+IL LA+ EI ++ INEAV+LAK+F
Sbjct: 77 LDTAINETAKGWTT-RRMGKV-ELTILRLALFEIRYDEEVPDKVAINEAVELAKKFGGDE 134
Query: 272 APRIINGCLRTFV 284
+P +NG L V
Sbjct: 135 SPAFVNGILAKLV 147
>gi|161525612|ref|YP_001580624.1| transcription antitermination protein NusB [Burkholderia
multivorans ATCC 17616]
gi|189349659|ref|YP_001945287.1| transcription antitermination protein NusB [Burkholderia
multivorans ATCC 17616]
gi|221201158|ref|ZP_03574198.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD2M]
gi|221206389|ref|ZP_03579402.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD2]
gi|221213666|ref|ZP_03586640.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD1]
gi|421470356|ref|ZP_15918738.1| transcription antitermination factor NusB [Burkholderia multivorans
ATCC BAA-247]
gi|421473866|ref|ZP_15921942.1| transcription antitermination factor NusB [Burkholderia multivorans
CF2]
gi|238687024|sp|A9AF25.1|NUSB_BURM1 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|160343041|gb|ABX16127.1| NusB antitermination factor [Burkholderia multivorans ATCC 17616]
gi|189333681|dbj|BAG42751.1| N utilization substance protein B [Burkholderia multivorans ATCC
17616]
gi|221166455|gb|EED98927.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD1]
gi|221173698|gb|EEE06132.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD2]
gi|221179008|gb|EEE11415.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD2M]
gi|400227863|gb|EJO57838.1| transcription antitermination factor NusB [Burkholderia multivorans
ATCC BAA-247]
gi|400233327|gb|EJO62882.1| transcription antitermination factor NusB [Burkholderia multivorans
CF2]
Length = 145
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITV-VGTRHQIVINEAVDLAK 265
H ++D + P +D+P ++ +E ++L +A E+T + T +++VINEAV+LAK
Sbjct: 59 HATLVDALTP------SLDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINEAVELAK 112
Query: 266 RFCDGAAPRIINGCL 280
F + +NG L
Sbjct: 113 TFGGSDGYKYVNGVL 127
>gi|283797531|ref|ZP_06346684.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
gi|291074900|gb|EFE12264.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
Length = 147
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPRIINGC 279
W +M G++ EL+IL LA+ EI ++ INEAV+LAK+F +P +NG
Sbjct: 88 WTTRRM----GKV-ELTILRLALFEIRYDEEVPDKVAINEAVELAKKFGGDESPAFVNGI 142
Query: 280 LRTFV 284
L V
Sbjct: 143 LAKLV 147
>gi|381205327|ref|ZP_09912398.1| transcription antitermination protein NusB [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 186
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 163 ELLRSDEEESAIEAEVLSAPPKLVYSKL--LLRFTRKLLVAVVDKWDAHVHIIDKVVPPI 220
E RS +E I E A + KL L F R L+ H +D+V+
Sbjct: 40 EHFRSRLKEDKIAMEQTDAKHQEFGKKLQETLEFARNLIQGA----SLHRKKLDRVIKHN 95
Query: 221 WKVWKMDQPAGR--ILELSILHLAMSEITVVGTR--HQIVINEAVDLAKRFCDGAAPRII 276
+ WK+ GR +L ++L LA+ E+ H++VINEA++L F D +
Sbjct: 96 LESWKL----GRLSVLTRNVLRLAVYEMLFQANEVPHRVVINEALELTDSFIDEKTKSFV 151
Query: 277 NGCLR 281
N L+
Sbjct: 152 NSVLQ 156
>gi|291450301|ref|ZP_06589691.1| transcription antitermination protein NusB [Streptomyces albus
J1074]
gi|359143840|ref|ZP_09178055.1| transcription antitermination protein NusB [Streptomyces sp. S4]
gi|421739489|ref|ZP_16177797.1| NusB antitermination factor [Streptomyces sp. SM8]
gi|291353250|gb|EFE80152.1| transcription antitermination protein NusB [Streptomyces albus
J1074]
gi|406692125|gb|EKC95838.1| NusB antitermination factor [Streptomyces sp. SM8]
Length = 142
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEA 260
+V+ + H ID+++ W +D+ +++ +IL L E+ V T +V++EA
Sbjct: 52 LVEGYAEHERRIDELIAQYAVDWTLDRMP--VVDRNILRLGAYELIWVDTTPDAVVLDEA 109
Query: 261 VDLAKRFCDGAAPRIINGCLRTF 283
V LAK F +P +NG L F
Sbjct: 110 VQLAKEFSTDDSPAFVNGLLARF 132
>gi|282882096|ref|ZP_06290737.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
315-B]
gi|300814940|ref|ZP_07095168.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|281298126|gb|EFA90581.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
315-B]
gi|300510910|gb|EFK38182.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 139
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 201 AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINE 259
+V+ + ++ +DKV+ + W + P ++ IL +A+ E ++ INE
Sbjct: 47 SVISELVNNLDSVDKVLSDNLQGWTI--PRLATVDREILRVAIFEFLYRKDIPVEVSINE 104
Query: 260 AVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 292
AV++AK++ +P+ +NG L + ++NL+ ++
Sbjct: 105 AVEIAKKYSSEESPKFVNGILASILKNLKDESD 137
>gi|313887990|ref|ZP_07821668.1| transcription antitermination factor NusB [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845945|gb|EFR33328.1| transcription antitermination factor NusB [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 132
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
+ ++ + ++DK D ++D+ + K W M + A ++ IL +A+ E
Sbjct: 44 YIKRTVPDILDKLD----LVDETIEKNLKGWTMARLAK--VDRQILRIAVYEFLYKDDIP 97
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++ INEAV++A+ + AP+ ING L T R+
Sbjct: 98 EEVSINEAVEIARLYSSDEAPKFINGILGTIYRSF 132
>gi|407003126|gb|EKE19746.1| N utilization substance protein B [uncultured bacterium]
Length = 185
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 212 IIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH---QIVINEAVDLAKRFC 268
+ID ++ W +DQ I++ +IL L + E+ ++ INE+++LAK F
Sbjct: 79 VIDALIEKCAPEWPLDQVT--IIDRNILRLGIFELMHGNYGEVPPKVAINESIELAKTFG 136
Query: 269 DGAAPRIINGCLRTFVRNLEGTANIEASKASK 300
++ R +NG L T R + + SK K
Sbjct: 137 GESSARFVNGVLGTIYREMGEPMKDDTSKKHK 168
>gi|331701511|ref|YP_004398470.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
gi|406027072|ref|YP_006725904.1| transcription antitermination protein NusB [Lactobacillus buchneri
CD034]
gi|329128854|gb|AEB73407.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
gi|405125561|gb|AFS00322.1| transcription antitermination protein NusB [Lactobacillus buchneri
CD034]
Length = 137
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 211 HIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 270
H I+K + W + ++ + ILE++I + + V ++ INEA++LAK+F D
Sbjct: 63 HTIEKYLASSWSLERIARTDLIILEIAIYEM----VYVDDMPAKVSINEAIELAKKFSDD 118
Query: 271 AAPRIINGCL 280
+ + +NG L
Sbjct: 119 RSRKFVNGIL 128
>gi|182417973|ref|ZP_02949281.1| transcription antitermination factor NusB [Clostridium butyricum
5521]
gi|237668086|ref|ZP_04528070.1| transcription antitermination factor NusB [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378144|gb|EDT75679.1| transcription antitermination factor NusB [Clostridium butyricum
5521]
gi|237656434|gb|EEP53990.1| transcription antitermination factor NusB [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 131
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 148 FGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWD 207
F G + +TVEEA E D E I+ +L L + +K L+ + + +
Sbjct: 14 FFGMTCSKDTVEEAVETF-IDNYEGDIK-------------ELDLTYIKKALIGIENNKE 59
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKR 266
A ID+ + + WK+D+ + + L+IL LA EI + INEA+++ ++
Sbjct: 60 A----IDEAISSNLQNWKIDRISK--VNLTILRLAAYEILFDEEVPRSVAINEALEITRK 113
Query: 267 FCDGAAPRIINGCL 280
+ D + +NG L
Sbjct: 114 YSDEKSVSFVNGVL 127
>gi|126653060|ref|ZP_01725195.1| transcription antitermination protein NusB [Bacillus sp. B14905]
gi|126590161|gb|EAZ84285.1| transcription antitermination protein NusB [Bacillus sp. B14905]
Length = 127
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVV-GTRHQIVINEAVDLAK 265
H+ ID + + W + R+ +E ++L LA+ E+ + T ++V+NEA++L K
Sbjct: 50 HLEEIDATLEQHLEKWSL----ARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELCK 105
Query: 266 RFCDGAAPRIINGCLRTF 283
F D ++ + +NG L F
Sbjct: 106 TFGDDSSSKFVNGVLSKF 123
>gi|357057613|ref|ZP_09118471.1| transcription antitermination factor NusB [Selenomonas infelix ATCC
43532]
gi|355374861|gb|EHG22152.1| transcription antitermination factor NusB [Selenomonas infelix ATCC
43532]
Length = 138
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 201 AVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQ------ 254
A+V H+ ID + + K WK+ + A ++ +++ +A E+ R+Q
Sbjct: 50 ALVQGTRTHLAEIDAEIARLAKEWKLHRMAA--VDRNLIRMAYYEM-----RYQEEPIDP 102
Query: 255 -IVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ INEAV+LAK++ A R +NG L ++++
Sbjct: 103 PVAINEAVELAKKYGSDDASRYVNGILAAMQKSVQ 137
>gi|94968243|ref|YP_590291.1| NusB antitermination factor [Candidatus Koribacter versatilis
Ellin345]
gi|119372272|sp|Q1ISD3.1|NUSB_ACIBL RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|94550293|gb|ABF40217.1| NusB antitermination factor [Candidatus Koribacter versatilis
Ellin345]
Length = 146
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKRFCDGA 271
IDK++ + W+M++ A ++ +IL A +E + T +VINE++++A+RF
Sbjct: 65 IDKLIEKHAEHWRMERMAA--VDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPE 122
Query: 272 APRIINGCLRTFVRNLEG 289
+ + ING L + R L+
Sbjct: 123 SVQFINGVLDSVARELDA 140
>gi|239827671|ref|YP_002950295.1| transcription antitermination protein NusB [Geobacillus sp. WCH70]
gi|239807964|gb|ACS25029.1| NusB antitermination factor [Geobacillus sp. WCH70]
Length = 133
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
F R+L++ V + H ID ++ + W +++ A ++ +IL +A E+ V
Sbjct: 41 FLRQLVIGVTE----HQEEIDALLRANLEKWTLERVAN--VDRAILRMATYEMKYVDDVP 94
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
++ ++EAV+LAK+F D + R +NG L
Sbjct: 95 VKVSLDEAVELAKKFGDTKSGRFVNGVL 122
>gi|117923480|ref|YP_864097.1| NusB antitermination factor [Magnetococcus marinus MC-1]
gi|117607236|gb|ABK42691.1| NusB antitermination factor [Magnetococcus marinus MC-1]
Length = 165
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 207 DAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAK 265
+A ++D + W MD+ + +++ +IL L + E+ H++++NEA++L+K
Sbjct: 70 EAEREVLDSWIGRAGAAWSMDRFS--VVDHNILRLGIYELLKQPEVPHRVILNEAIELSK 127
Query: 266 RFCDGAAPRIINGCL 280
RF + R +NG +
Sbjct: 128 RFGGEESSRFVNGVM 142
>gi|374708789|ref|ZP_09713223.1| transcription antitermination protein NusB [Sporolactobacillus
inulinus CASD]
Length = 133
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIV- 256
++ ++D+ H ID+++ K W +D+ ++ +IL LA+ EI V
Sbjct: 41 FVIRLLDQTLDHEEAIDRLICKHLKNWSLDRVGN--IDKTILRLAVCEIMYFDDIPLTVS 98
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+NEAV+L K + D + +NG L +++E
Sbjct: 99 VNEAVELCKIYSDEQTRKFVNGVLSGISKDIE 130
>gi|257893505|ref|ZP_05673158.1| transcription antiterminator NusB, partial [Enterococcus faecium
1,231,408]
gi|257829884|gb|EEV56491.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
Length = 152
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 213 IDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDG 270
+DKV+ K W +++ + ++L IL +A+ E+T V + +NEA++LAK F D
Sbjct: 78 LDKVIEKHLKNNWHINRISK--MDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTFSDD 135
Query: 271 AAPRIINGCLRTFVRNL 287
+ + +NG L ++ L
Sbjct: 136 RSRKFVNGVLSNVLKEL 152
>gi|455650745|gb|EMF29504.1| transcription antitermination protein NusB [Streptomyces gancidicus
BKS 13-15]
Length = 143
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 200 VAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRHQIVIN 258
+ +V+ + H ID+++ W +D+ +++ SIL L E+ V T +V++
Sbjct: 50 MQLVEGYAEHAQRIDELIAQYSVGWTLDRMP--VVDRSILRLGAYELIWVDETPDAVVLD 107
Query: 259 EAVDLAKRFCDGAAPRIINGCL 280
E V LAK F +P +NG L
Sbjct: 108 EMVQLAKEFSTDESPSFVNGLL 129
>gi|169828975|ref|YP_001699133.1| N utilization substance protein B-like protein [Lysinibacillus
sphaericus C3-41]
gi|238688177|sp|B1HRY0.1|NUSB_LYSSC RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|168993463|gb|ACA41003.1| N utilization substance protein B-like protein (NusB-like protein)
[Lysinibacillus sphaericus C3-41]
Length = 127
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVV-GTRHQIVINEAVDLAK 265
H+ ID + + W + R+ +E ++L LA+ E+ + T ++V+NEA++L K
Sbjct: 50 HLEEIDATLEQHLEKWSL----ARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELCK 105
Query: 266 RFCDGAAPRIINGCLRTF 283
F D ++ + +NG L F
Sbjct: 106 TFGDDSSSKFVNGVLSKF 123
>gi|402815134|ref|ZP_10864727.1| N utilization substance protein B-like protein [Paenibacillus alvei
DSM 29]
gi|402507505|gb|EJW18027.1| N utilization substance protein B-like protein [Paenibacillus alvei
DSM 29]
Length = 158
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASK 297
++ INEA++LAK F + + +NG L +R ++ + +EA K
Sbjct: 109 KVAINEAINLAKHFGTDESGKFVNGVLGQMMREMDKASAVEADK 152
>gi|221135088|ref|ZP_03561391.1| transcription antitermination protein NusB [Glaciecola sp.
HTCC2999]
Length = 145
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 234 LELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
+E +IL LA E+T + +++VINEA++LAK F + + +NG L V+ L
Sbjct: 85 IEKAILRLATLELTQRIDVPYKVVINEAIELAKSFGAEESHKFVNGVLDKAVKTL 139
>gi|422868656|ref|ZP_16915194.1| transcription antitermination protein NusB domain protein, partial
[Enterococcus faecalis TX1467]
gi|329574370|gb|EGG55942.1| transcription antitermination protein NusB domain protein
[Enterococcus faecalis TX1467]
Length = 59
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 234 LELSILHLAMSEITVVGTRHQIV-INEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291
+++ IL LA+ E+ V IV +NEAV+L+K++ D + + +NG L ++ ++ A
Sbjct: 1 IDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRKFVNGVLSNLMKEIDSEA 59
>gi|94986598|ref|YP_594531.1| transcription termination factor [Lawsonia intracellularis
PHE/MN1-00]
gi|442555413|ref|YP_007365238.1| transcription antitermination factor NusB [Lawsonia intracellularis
N343]
gi|119390780|sp|Q1MS16.1|NUSB_LAWIP RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|94730847|emb|CAJ54209.1| transcription termination factor [Lawsonia intracellularis
PHE/MN1-00]
gi|441492860|gb|AGC49554.1| transcription antitermination factor NusB [Lawsonia intracellularis
N343]
Length = 161
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGA 271
+DK++ + W++D+ G+I EL++L +A E+ ++ +NEA++LA F D
Sbjct: 77 LDKIISQFSQNWRVDR-LGKI-ELTLLRIATFEMYYCPDVPPKVSLNEALELATCFGDEK 134
Query: 272 APRIINGCLRTFVRNLE 288
A + ING L ++ +E
Sbjct: 135 ARKFINGILDAIIKAIE 151
>gi|411008233|ref|ZP_11384562.1| transcription antitermination protein NusB [Aeromonas aquariorum
AAK1]
gi|423195529|ref|ZP_17182112.1| transcription antitermination factor NusB [Aeromonas hydrophila
SSU]
gi|404633304|gb|EKB29853.1| transcription antitermination factor NusB [Aeromonas hydrophila
SSU]
Length = 137
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVV 249
L + R LL V H + +DKV P + +P + ++ +IL LA E+T
Sbjct: 45 LNYFRDLLFGVA----LHCNELDKVFAPF-----LSRPLEEVDMVDKAILRLATYELTRR 95
Query: 250 G-TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
++VINEA++LAK F + + +NG L +++L+
Sbjct: 96 DDVPPRVVINEAIELAKAFAADDSHKFVNGVLDKVIKSLD 135
>gi|406887115|gb|EKD33983.1| hypothetical protein ACD_75C02516G0003 [uncultured bacterium]
Length = 143
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEAVDLAKR 266
A + +D ++ W++++ A E ++L +A+ E + Q+ INEAV++AKR
Sbjct: 62 AEIVRLDLLISEAATNWRLERIAP--TERNLLRIAVFEMLERADVPAQVAINEAVEIAKR 119
Query: 267 FCDGAAPRIINGCLRTFVRNLE 288
F +P+ ING L + LE
Sbjct: 120 FAGEDSPKFINGVLDSVKGKLE 141
>gi|392987385|ref|YP_006485978.1| transcription antitermination protein NusB [Enterococcus hirae ATCC
9790]
gi|392334805|gb|AFM69087.1| transcription antitermination protein NusB [Enterococcus hirae ATCC
9790]
Length = 149
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGA 271
I+K + W++ ++ + ++L IL +A+ E+ + + +NEA++LAK F D
Sbjct: 75 IEKHLKGNWRINRISK-----MDLIILRIAIFEMKYIEDVPSAVALNEAIELAKTFSDDQ 129
Query: 272 APRIINGCLRTFVRNLEGTA 291
+ + +NG L ++ +E A
Sbjct: 130 SRKFVNGVLSNVLKEIEAGA 149
>gi|357388343|ref|YP_004903182.1| putative N utilization substance protein B-like protein
[Kitasatospora setae KM-6054]
gi|311894818|dbj|BAJ27226.1| putative N utilization substance protein B homolog [Kitasatospora
setae KM-6054]
Length = 145
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEA 260
+V+ + H ID ++ W +D+ I + +++ L E I GT +V++EA
Sbjct: 56 LVEGYAQHARTIDDLISTYAVGWTIDRMP--IADRNVIRLGAYELIWEDGTPDAVVLDEA 113
Query: 261 VDLAKRFCDGAAPRIINGCLRTFV 284
V++AK F +P +NG L F+
Sbjct: 114 VEIAKEFSTDESPAFVNGLLARFM 137
>gi|407700676|ref|YP_006825463.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'Black Sea 11']
gi|407249823|gb|AFT79008.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'Black Sea 11']
Length = 140
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 234 LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
+E +IL +A E+T + ++++INEA++LAK F + + ING L VR L
Sbjct: 80 IEKAILRIATLELTERIDVPYRVIINEAIELAKAFGAEESHKFINGALDKAVRTL 134
>gi|332141882|ref|YP_004427620.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'Deep ecotype']
gi|407684434|ref|YP_006799608.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'English Channel 673']
gi|410862286|ref|YP_006977520.1| transcription antitermination protein NusB [Alteromonas macleodii
AltDE1]
gi|238693257|sp|B4RVY5.1|NUSB_ALTMD RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|327551904|gb|AEA98622.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'Deep ecotype']
gi|407246045|gb|AFT75231.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'English Channel 673']
gi|410819548|gb|AFV86165.1| transcription antitermination protein NusB [Alteromonas macleodii
AltDE1]
Length = 140
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 234 LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
+E +IL +A E+T + ++++INEA++LAK F + + ING L VR L
Sbjct: 80 IEKAILRIATLELTERIDVPYRVIINEAIELAKAFGAEESHKFINGALDKAVRTL 134
>gi|406597420|ref|YP_006748550.1| transcription antitermination protein NusB [Alteromonas macleodii
ATCC 27126]
gi|406374741|gb|AFS37996.1| transcription antitermination protein NusB [Alteromonas macleodii
ATCC 27126]
Length = 140
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 234 LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
+E +IL +A E+T + ++++INEA++LAK F + + ING L VR L
Sbjct: 80 IEKAILRIATLELTERIDVPYRVIINEAIELAKAFGAEESHKFINGALDKAVRTL 134
>gi|34763758|ref|ZP_00144676.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27886472|gb|EAA23729.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 190
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 237 SILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEAS 296
++L +++ +IT + + ++ V+ EA +LAK+ + ING LR ++RN + A
Sbjct: 73 NLLRISIYQITFMDSDNKGVVWEATELAKKKYGVPISKFINGTLRNYLRNKDSELKSLAD 132
Query: 297 KASKEV 302
K + EV
Sbjct: 133 KKNYEV 138
>gi|298245582|ref|ZP_06969388.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
gi|297553063|gb|EFH86928.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
Length = 147
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRF 267
H+ ID + + W + Q A ++ +IL LA+ EI T + INEAV+LAK F
Sbjct: 57 HLADIDAHIQSAAREWPLQQMAR--VDKNILRLAIYEILFNNTVPAKAAINEAVELAKLF 114
Query: 268 CDGAAPRIINGCLRTF 283
+ R ING L T
Sbjct: 115 GSDTSSRFINGVLGTI 130
>gi|344998509|ref|YP_004801363.1| NusB antitermination factor [Streptomyces sp. SirexAA-E]
gi|344314135|gb|AEN08823.1| NusB antitermination factor [Streptomyces sp. SirexAA-E]
Length = 143
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEA 260
+V+ + + ID ++ W++D+ +++ SIL L E I + T +VI+EA
Sbjct: 52 LVEGYAQYADRIDDLIVTYAVDWEIDRMP--VVDRSILRLGAYELIWMDSTPDAVVIDEA 109
Query: 261 VDLAKRFCDGAAPRIINGCLRTF 283
V LAK F +P +NG L F
Sbjct: 110 VQLAKEFSTDDSPSFVNGLLARF 132
>gi|146319474|ref|YP_001199186.1| transcription termination factor [Streptococcus suis 05ZYH33]
gi|145690280|gb|ABP90786.1| Transcription termination factor [Streptococcus suis 05ZYH33]
Length = 64
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 233 ILELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+++ +I+ L + EI T ++ +NEA++LAK F D ++ + +NG L F++
Sbjct: 1 MIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFSDESSAKFVNGVLSQFIK 54
>gi|302533374|ref|ZP_07285716.1| transcription antitermination factor NusB [Streptomyces sp. C]
gi|302442269|gb|EFL14085.1| transcription antitermination factor NusB [Streptomyces sp. C]
Length = 143
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TR 252
FT L+ DK V ID ++ W++D+ +++ +IL L E+ V T
Sbjct: 48 FTMDLVEGYADK----VKRIDDLIVTYAVDWELDRMP--VVDRNILRLGAYELIWVDETP 101
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283
+ I+EAV LAK F +P +NG L F
Sbjct: 102 DAVAIDEAVQLAKEFSTDDSPAFVNGLLARF 132
>gi|407688362|ref|YP_006803535.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'Balearic Sea AD45']
gi|407291742|gb|AFT96054.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'Balearic Sea AD45']
Length = 140
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 234 LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
+E +IL +A E+T + ++++INEA++LAK F + + ING L VR L
Sbjct: 80 IEKAILRIATLELTERIDVPYRVIINEAIELAKAFGAEESHKFINGALDKAVRTL 134
>gi|424788969|ref|ZP_18215700.1| transcription antitermination factor NusB [Enterococcus faecium
V689]
gi|424952359|ref|ZP_18367384.1| transcription antitermination factor NusB [Enterococcus faecium
R494]
gi|425005854|ref|ZP_18417063.1| transcription antitermination factor NusB [Enterococcus faecium
ERV102]
gi|425018175|ref|ZP_18428645.1| transcription antitermination factor NusB [Enterococcus faecium
C621]
gi|425037501|ref|ZP_18442166.1| transcription antitermination factor NusB [Enterococcus faecium
513]
gi|402922925|gb|EJX43267.1| transcription antitermination factor NusB [Enterococcus faecium
V689]
gi|402941372|gb|EJX60102.1| transcription antitermination factor NusB [Enterococcus faecium
R494]
gi|402984845|gb|EJY00111.1| transcription antitermination factor NusB [Enterococcus faecium
ERV102]
gi|403002839|gb|EJY16776.1| transcription antitermination factor NusB [Enterococcus faecium
C621]
gi|403021939|gb|EJY34355.1| transcription antitermination factor NusB [Enterococcus faecium
513]
Length = 150
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 213 IDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDG 270
+DKV+ K W +++ + ++L IL +A+ E+T V + +NEA++LAK F D
Sbjct: 71 LDKVIEKHLKNNWHINRISK--MDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTFSDD 128
Query: 271 AAPRIINGCLRTFVRNL 287
+ + +NG L ++ L
Sbjct: 129 RSRKFVNGVLSNVLKEL 145
>gi|115350870|ref|YP_772709.1| transcription antitermination protein NusB [Burkholderia ambifaria
AMMD]
gi|170702886|ref|ZP_02893730.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
gi|171321369|ref|ZP_02910324.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
gi|172059882|ref|YP_001807534.1| transcription antitermination protein NusB [Burkholderia ambifaria
MC40-6]
gi|122323813|sp|Q0BHJ8.1|NUSB_BURCM RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|238689186|sp|B1YUJ1.1|NUSB_BURA4 RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|115280858|gb|ABI86375.1| NusB antitermination factor [Burkholderia ambifaria AMMD]
gi|170132203|gb|EDT00687.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
gi|171093347|gb|EDT38540.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
gi|171992399|gb|ACB63318.1| NusB antitermination factor [Burkholderia ambifaria MC40-6]
Length = 145
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITV-VGTRHQIVINEAVDLAK 265
H +I+ + P +D+P ++ +E ++L +A E+T V T ++++INEAV+LAK
Sbjct: 59 HATLIEALTP------SLDRPVDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAK 112
Query: 266 RFCDGAAPRIINGCL 280
F + +NG L
Sbjct: 113 TFGGSDGYKYVNGVL 127
>gi|452992525|emb|CCQ96058.1| Ribosomal RNA small subunit methyltransferase B [Clostridium
ultunense Esp]
Length = 446
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTR 252
R+L+ VV+ HII K+ K+ K+ QPA ILE IL + + +I +
Sbjct: 40 LIRELVYGVVENCLYLDHIISKLSKV--KIKKI-QPA--ILE--ILRMGVYQIAFMEKIP 92
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIE 294
+ +NEAV L+K++ A +NG LR F RN E +E
Sbjct: 93 DRAAVNEAVILSKKYGYKGASGFVNGVLRNFSRNKESLMMVE 134
>gi|269958899|ref|YP_003328688.1| N utilization substance protein B [Anaplasma centrale str. Israel]
gi|269848730|gb|ACZ49374.1| N utilization substance protein B [Anaplasma centrale str. Israel]
Length = 173
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 191 LLRFTRKLLVAVVDKWDAHVHIIDKVVPP-IWKVWKMDQPAGRILELSILHLAMSEITVV 249
L R ++LL ++ + ID ++ I K W MD+ ++ LS++ + E+
Sbjct: 56 LGRVDKRLLTKILGSMLSKYSEIDAIISEHISKKWTMDRI--NLISLSVMRAGICELLCF 113
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
T +VINE VD+A + A +N L
Sbjct: 114 NTNESVVINEYVDIASYALEDAEVDFVNAIL 144
>gi|291296745|ref|YP_003508143.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
gi|290471704|gb|ADD29123.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
Length = 152
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 170 EESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQP 229
EE+ EA+VL + LL F ++L V + A +D+ + + W Q
Sbjct: 37 EEADQEADVLD------HEGLL--FAQRL----VQGYAAQQQTVDEALASTIEGWSFSQM 84
Query: 230 AGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
A +L++L LA E+ T + +I AV +AKR+ + R +NG L ++ +E
Sbjct: 85 AKT--DLAVLRLATYEMLFEPTPYAPLIEVAVKIAKRYGGEDSGRFVNGVLARLLKRIE 141
>gi|407010670|gb|EKE25499.1| hypothetical protein ACD_5C00137G0004 [uncultured bacterium]
Length = 169
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 212 IIDKVVP--PIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 269
+I+K P P+ +V +D+ R+ ++H SE+ ++ INE+++LAK F
Sbjct: 66 LIEKCAPEWPLEQVTIIDRNILRLGIYELMHGNYSEVPP-----KVAINESIELAKTFGG 120
Query: 270 GAAPRIINGCLRTFVRNLEGTANIEASKASK 300
++ R +NG L T R + + SK K
Sbjct: 121 ESSARFVNGVLGTIYREMGEPMKDDTSKKHK 151
>gi|325107333|ref|YP_004268401.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
gi|324967601|gb|ADY58379.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
Length = 137
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H ID + + K W + + A + + ++L L E+ T H +VI+E ++LAK+F
Sbjct: 56 HRETIDDRISKVAKNWTLKRMA--VTDRNLLRLGCFELDYHDTPHTVVIDEIIELAKKFG 113
Query: 269 DGAAPRIINGCL 280
+ +NG L
Sbjct: 114 AENSSSFVNGIL 125
>gi|190570484|ref|YP_001974842.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019243|ref|ZP_03335050.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|353327615|ref|ZP_08969942.1| N utilization substance protein B [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
gi|373450719|ref|ZP_09542688.1| Transcription antitermination factor NusB [Wolbachia pipientis
wAlbB]
gi|190356756|emb|CAQ54115.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995352|gb|EEB55993.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|371932070|emb|CCE77700.1| Transcription antitermination factor NusB [Wolbachia pipientis
wAlbB]
Length = 160
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
+F LL V+ + + II+ + P W + +++ ++ LSIL +A+ E+ T
Sbjct: 64 QFLENLLCKVIKSSEEYDKIIESYLHPSWSLSRLN-----LISLSILRIAVCELIDFDTP 118
Query: 253 HQIVINEAVDLAKRFCDGAAPR---IINGCL 280
IVINE ++A D AP ING L
Sbjct: 119 APIVINEYTNIASDLLD--APNKIGFINGLL 147
>gi|302389868|ref|YP_003825689.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
gi|302200496|gb|ADL08066.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
Length = 154
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F K + V++K + IID+ W++ +++ I+ L+I + S+ +
Sbjct: 57 FMLKEVNGVLEKKECIDEIIDEYCVD-WELERLNIADRNIMRLAIYEIFFSDDIPL---- 111
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 288
+ INEAV++AK++ D +P+ +NG L R+ E
Sbjct: 112 SVSINEAVEIAKKYGDEKSPKFVNGVLGAIARDRE 146
>gi|302343804|ref|YP_003808333.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
gi|301640417|gb|ADK85739.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
Length = 142
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 14/111 (12%)
Query: 176 AEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILE 235
AE +AP KL +TR+L++ V + + ID+++ + + W++++ + ++
Sbjct: 33 AENFAAPEKL------FAYTRQLVLGV----EQNRRRIDEMLNRVSRKWRVERMSW--VD 80
Query: 236 LSILHLAMSEITVVG--TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 284
+IL LA EI + + I+EA+DL+KR+ + + ING L + +
Sbjct: 81 RNILRLACYEIYLAPQPVPPKAAISEALDLSKRYAEDCSCSFINGVLDSLI 131
>gi|334705625|ref|ZP_08521491.1| antitermination protein NusB [Aeromonas caviae Ae398]
Length = 137
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 192 LRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVV 249
L + R LL V H + +DKV P + +P + ++ +IL LA E+T
Sbjct: 45 LNYFRDLLFGVA----VHCNELDKVFAPF-----LSRPLEEVDMVDKAILRLATYELTRR 95
Query: 250 -GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
++VINEA++LAK F + + +NG L ++ L
Sbjct: 96 EDVPPRVVINEAIELAKAFAADDSHKFVNGVLDKVIKTL 134
>gi|402567325|ref|YP_006616670.1| transcription antitermination protein NusB [Burkholderia cepacia
GG4]
gi|402248522|gb|AFQ48976.1| transcription antitermination protein NusB [Burkholderia cepacia
GG4]
Length = 145
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITV-VGTRHQIVINEAVDLAK 265
H +++ + P +D+P ++ +E ++L +A E+T V T ++++INEAV+LAK
Sbjct: 59 HATLVEALTP------SLDRPVDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAK 112
Query: 266 RFCDGAAPRIINGCL 280
F + +NG L
Sbjct: 113 TFGGSDGYKYVNGVL 127
>gi|357414552|ref|YP_004926288.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331]
gi|320011921|gb|ADW06771.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331]
Length = 143
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRHQIVINEA 260
+V+ + + ID ++ W++D+ +++ SIL L E+ + T +VI+EA
Sbjct: 52 LVEGYAQYADRIDDLIVTYAVDWEIDRMP--VVDRSILRLGAYELVWMDSTPDAVVIDEA 109
Query: 261 VDLAKRFCDGAAPRIINGCLRTF 283
V LAK F +P +NG L F
Sbjct: 110 VQLAKEFSTDDSPAFVNGLLARF 132
>gi|397906453|ref|ZP_10507253.1| Transcription termination protein NusB [Caloramator australicus
RC3]
gi|397160410|emb|CCJ34590.1| Transcription termination protein NusB [Caloramator australicus
RC3]
Length = 138
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQI----VINEAVDLAKRFC 268
ID+++ WK+++ A ++LSI+ LA+ EI R + INEAV+LAK +
Sbjct: 61 IDELIDKHAHGWKLNRLAK--VDLSIMRLAIYEIM---EREDVPTPVAINEAVELAKIYG 115
Query: 269 DGAAPRIINGCLRTFVRNL 287
+P ING L V +
Sbjct: 116 TDQSPAFINGVLAKVVEEI 134
>gi|395775279|ref|ZP_10455794.1| transcription antitermination protein NusB [Streptomyces
acidiscabies 84-104]
Length = 141
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSE-ITVVGTRHQIVINEA 260
+V+ + H ID ++ W +D+ +++ +IL L E I V T +V++E
Sbjct: 52 LVEGYAEHAARIDSLISQYSVGWTLDRMP--VVDRNILRLGAYELIWVDATPDAVVLDEM 109
Query: 261 VDLAKRFCDGAAPRIINGCLRTFVRNLEGT 290
V LAK F +P +NG L F + L+G+
Sbjct: 110 VQLAKEFSTEESPAFVNGLLGRF-KELKGS 138
>gi|119896608|ref|YP_931821.1| transcription antitermination protein NusB [Azoarcus sp. BH72]
gi|166215662|sp|A1K279.1|NUSB_AZOSB RecName: Full=N utilization substance protein B homolog;
Short=Protein NusB
gi|119669021|emb|CAL92934.1| putative N utilization substance protein B [Azoarcus sp. BH72]
Length = 155
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 190 LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEIT-V 248
+LLR T + A+ D++ +H + + PI E +IL L E+
Sbjct: 52 MLLRGTLDNVGALQDEFSPFIHRPIEELSPI--------------ERAILLLGTHELKHN 97
Query: 249 VGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKE 301
+ T +++VINEA++LAK + R +NG L L + +EA++A K+
Sbjct: 98 IETPYRVVINEAIELAKAYGGTDGHRFVNGVLDKLAARLR-SIEVEAARAKKD 149
>gi|294501203|ref|YP_003564903.1| transcription antitermination factor NusB [Bacillus megaterium QM
B1551]
gi|295706550|ref|YP_003599625.1| transcription antitermination factor NusB [Bacillus megaterium DSM
319]
gi|384044952|ref|YP_005492969.1| transcription termination factor [Bacillus megaterium WSH-002]
gi|294351140|gb|ADE71469.1| transcription antitermination factor NusB [Bacillus megaterium QM
B1551]
gi|294804209|gb|ADF41275.1| transcription antitermination factor NusB [Bacillus megaterium DSM
319]
gi|345442643|gb|AEN87660.1| Transcription termination factor [Bacillus megaterium WSH-002]
Length = 130
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV---V 249
+F L++ VV+ H ID+++ + W +D+ A ++ IL +A+ E+ +
Sbjct: 39 QFLESLVLGVVE----HQQEIDELLRNHLEKWTLDRVA--TVDRVILRIAVYEMKYEEEI 92
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287
T + +NEA++LAK F D + + ING L + L
Sbjct: 93 PT--SVTLNEAIELAKTFGDDQSSKFINGVLSKVLTTL 128
>gi|408411013|ref|ZP_11182198.1| Transcription antitermination protein NusB [Lactobacillus sp. 66c]
gi|409349235|ref|ZP_11232744.1| Transcription antitermination protein NusB [Lactobacillus
equicursoris CIP 110162]
gi|407874795|emb|CCK84004.1| Transcription antitermination protein NusB [Lactobacillus sp. 66c]
gi|407878296|emb|CCK84802.1| Transcription antitermination protein NusB [Lactobacillus
equicursoris CIP 110162]
Length = 132
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI---TVV 249
+++++L+ V+DK + DK+ + W++++ + + L+IL +A+ E+ +V+
Sbjct: 43 KYSQELIAGVIDK---QAELRDKISSKLKAGWRIERLS--LTTLAILEIALYEMLYSSVI 97
Query: 250 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
R INEA++L F + +NG L FV+
Sbjct: 98 EDRS--AINEALNLCDEFDEPKHKPFVNGLLANFVQ 131
>gi|254253011|ref|ZP_04946329.1| Transcription termination factor [Burkholderia dolosa AUO158]
gi|124895620|gb|EAY69500.1| Transcription termination factor [Burkholderia dolosa AUO158]
Length = 145
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITV-VGTRHQIVINEAVDLAK 265
H +++ + P +D+P ++ +E ++L +A E+T + T +++VINEAV+LAK
Sbjct: 59 HATLVEAIAPA------LDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINEAVELAK 112
Query: 266 RFCDGAAPRIINGCL 280
F + +NG L
Sbjct: 113 TFGGSDGYKYVNGVL 127
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,356,534,346
Number of Sequences: 23463169
Number of extensions: 161295094
Number of successful extensions: 425637
Number of sequences better than 100.0: 876
Number of HSP's better than 100.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 538
Number of HSP's that attempted gapping in prelim test: 425198
Number of HSP's gapped (non-prelim): 891
length of query: 306
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 164
effective length of database: 9,027,425,369
effective search space: 1480497760516
effective search space used: 1480497760516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)