BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021860
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1WXY6|NUSB_CYAA5 N utilization substance protein B homolog OS=Cyanothece sp. (strain
ATCC 51142) GN=nusB PE=3 SV=1
Length = 209
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + K W++ + A ++ IL LA++EI + ++ INEAV+LAKR+ D
Sbjct: 134 IDEQLEAVLKDWQLKRLAK--IDQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDG 191
Query: 273 PRIINGCLRTF 283
R ING LR F
Sbjct: 192 YRFINGVLRRF 202
>sp|Q18B61|NUSB_CLOD6 N utilization substance protein B homolog OS=Clostridium difficile
(strain 630) GN=nusB PE=3 SV=1
Length = 169
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+++ K W +D+ +++SIL L++ EI + T +++ INEAV+LAK +CD +
Sbjct: 95 IDELINKHAKNWTVDRMPK--VDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKS 152
Query: 273 PRIINGCLRTFV 284
P+ ING L + V
Sbjct: 153 PKFINGILGSVV 164
>sp|Q5N1J7|NUSB_SYNP6 N utilization substance protein B homolog OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=nusB
PE=3 SV=1
Length = 213
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + W++ + L+ IL LA +EI +GT Q+ INEAV+LA R+ D
Sbjct: 130 IDRTLNDVMVDWQLHRVPR--LDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEG 187
Query: 273 PRIINGCLRTF 283
R ING LR
Sbjct: 188 RRFINGVLRRL 198
>sp|Q8GIR7|NUSB_SYNE7 N utilization substance protein B homolog OS=Synechococcus
elongatus (strain PCC 7942) GN=nusB PE=3 SV=1
Length = 213
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + W++ + L+ IL LA +EI +GT Q+ INEAV+LA R+ D
Sbjct: 130 IDRTLNDVMVDWQLHRVPR--LDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEG 187
Query: 273 PRIINGCLRTF 283
R ING LR
Sbjct: 188 RRFINGVLRRL 198
>sp|B8HYJ8|NUSB_CYAP4 N utilization substance protein B homolog OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=nusB PE=3 SV=1
Length = 209
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFC 268
H ID ++ W+ ++ A ++ +IL +A++EI + T Q+ INEAV+LAKR+
Sbjct: 126 HRTAIDHLLETALVDWQFNRLAQ--IDRNILRIAVAEILYLKTPTQVTINEAVELAKRYS 183
Query: 269 DGAAPRIINGCLRTFVRNLEGTAN 292
D R +NG LR + +LE A
Sbjct: 184 DEDGYRFVNGVLRRTIPHLEAQAQ 207
>sp|B5YE05|NUSB_DICT6 N utilization substance protein B homolog OS=Dictyoglomus
thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
GN=nusB PE=3 SV=1
Length = 144
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRF 267
+ + D ++ K WK+++ LE +IL LA++E+ T + +NEAV+LAK++
Sbjct: 50 YKDLADSIISRFSKNWKLERMGA--LERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKY 107
Query: 268 CDGAAPRIINGCLRTFVRNLE 288
A R +NG LR VRN E
Sbjct: 108 VSPEAGRFVNGILRNIVRNWE 128
>sp|B2J3F1|NUSB_NOSP7 N utilization substance protein B homolog OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=nusB PE=3 SV=1
Length = 213
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
+ ++L++ V + + HIID+++ W++ + A L+ IL +A++E+ +G
Sbjct: 123 YAKELVITV----NENRHIIDELLSTALVDWQVTRLAQ--LDRDILQIAVAEMKFLGVPD 176
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCLR 281
I INEAV+LAKR+ R ING LR
Sbjct: 177 SIAINEAVELAKRYSGDDGHRFINGVLR 204
>sp|A7GWZ7|NUSB_CAMC5 N utilization substance protein B homolog OS=Campylobacter curvus
(strain 525.92) GN=nusB PE=3 SV=1
Length = 131
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
+D+++ P K +++ I+EL+IL L + E+ GT ++INEA++LAK +A
Sbjct: 59 LDEILKPYLKEKDIERIG--IVELAILRLGVYEMKFTGTDKAVIINEAIELAKELGGDSA 116
Query: 273 PRIINGCL 280
P+ ING L
Sbjct: 117 PKFINGVL 124
>sp|B7K4P4|NUSB_CYAP8 N utilization substance protein B homolog OS=Cyanothece sp. (strain
PCC 8801) GN=nusB PE=3 SV=1
Length = 211
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + + W++++ ++ IL +A++EI + +++ INEA+++AKR+ D
Sbjct: 134 IDQQLEAVLVDWQLNRLPK--IDRDILRIAVAEILFLEIPNKVAINEAIEMAKRYSDDEG 191
Query: 273 PRIINGCLRTFVRNLEGTAN 292
R ING LR F L T N
Sbjct: 192 YRFINGVLRRFTERLRITNN 211
>sp|A7GSK0|NUSB_BACCN N utilization substance protein B homolog OS=Bacillus cereus subsp.
cytotoxis (strain NVH 391-98) GN=nusB PE=3 SV=1
Length = 130
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVG-TRH 253
T + L ++V + H ID+++ K WK+++ + I++ SIL LA+ E+ + H
Sbjct: 39 TNEFLDSLVGGFVEHKETIDELIRQNLKKWKLERIS--IVDRSILRLAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|B8E246|NUSB_DICTD N utilization substance protein B homolog OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=nusB PE=3 SV=1
Length = 144
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRF 267
+ + D+++ K WK+++ +E +IL +A++E+ T + +NEAV+LAK++
Sbjct: 50 YKDLADEIISKFSKNWKLERIG--TIEKNILRMAIAEMFTFSDIPQGVTVNEAVELAKKY 107
Query: 268 CDGAAPRIINGCLRTFVRN 286
A R ING LR VRN
Sbjct: 108 VSPEAGRFINGILRNIVRN 126
>sp|B2A534|NUSB_NATTJ N utilization substance protein B homolog OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=nusB PE=3 SV=1
Length = 139
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 202 VVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITV---VGTRHQIVIN 258
VV + ++++ ID+ + + WK+D+ + ++LSIL LA+SEI + TR + IN
Sbjct: 51 VVSRTESNLQKIDEYIEKFSENWKIDRLSK--VDLSILRLAISEILFFDDIPTR--VSIN 106
Query: 259 EAVDLAKRFCDGAAPRIINGCL 280
EAV+LAK+F A ING L
Sbjct: 107 EAVELAKKFSTDKASGYINGIL 128
>sp|Q7MAE9|NUSB_WOLSU N utilization substance protein B homolog OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=nusB PE=3 SV=1
Length = 135
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 208 AHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRF 267
AH+ ID+ + K W + +E +IL L EI G ++INEAV+L+K F
Sbjct: 55 AHLGEIDEEIKKHLKEWDFSRIGD--MERAILRLGTFEIVYSGVDRAVIINEAVELSKTF 112
Query: 268 CDGAAPRIINGCL 280
+ +PR +NG L
Sbjct: 113 GNDNSPRFVNGVL 125
>sp|B9KFP0|NUSB_CAMLR N utilization substance protein B homolog OS=Campylobacter lari
(strain RM2100 / D67 / ATCC BAA-1060) GN=nusB PE=3 SV=1
Length = 132
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 196 RKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQI 255
RK + + + + + ++D+ + K K+D A +E +IL L EI T+ I
Sbjct: 42 RKFTLDLYNGINEQLALLDEKINECLKEHKLDGVAS--IEKAILRLGAYEILFTSTQKAI 99
Query: 256 VINEAVDLAKRFCDGAAPRIINGCL 280
+INEA++LAK AP+ ING L
Sbjct: 100 IINEAIELAKEMAGDNAPKFINGVL 124
>sp|C1C5G8|NUSB_STRP7 N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain 70585) GN=nusB PE=3 SV=1
Length = 140
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + KV W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKVGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|Q9CHN4|NUSB_LACLA N utilization substance protein B homolog OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=nusB PE=3 SV=2
Length = 192
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 193 RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR 252
+ +L+ V+DK + I K + W ++ ++E +IL ++ EI T
Sbjct: 105 EYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRL-----TLVEQAILQVSSYEILYTETP 159
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 285
+ +NEAV+L+K F D + R ING L F++
Sbjct: 160 DVVAVNEAVELSKDFSDEKSSRFINGVLTNFLK 192
>sp|Q7VK55|NUSB_HELHP N utilization substance protein B homolog OS=Helicobacter hepaticus
(strain ATCC 51449 / 3B1) GN=nusB PE=3 SV=1
Length = 157
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRH 253
F LL V++ H+ ID + P K W+ + G +E ++L L EI T
Sbjct: 45 FAFSLLQGVIE----HLSQIDLCIAPYLKEWEFSRLGG--MERAMLRLGAFEILYTETDT 98
Query: 254 QIVINEAVDLAKRF-CDGAAPRIINGCL 280
++INEAV+L K + + APR ING L
Sbjct: 99 PVIINEAVELGKMYGGEDNAPRFINGVL 126
>sp|B1XIZ3|NUSB_SYNP2 N utilization substance protein B homolog OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=nusB PE=3 SV=1
Length = 213
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
L+ IL +A++EI + T +++ INEAV+LAKR+ D R ING LR
Sbjct: 153 LDRDILRIAVAEILFLETPYKVAINEAVELAKRYSDEDGHRFINGVLR 200
>sp|C4L3F7|NUSB_EXISA N utilization substance protein B homolog OS=Exiguobacterium sp.
(strain ATCC BAA-1283 / AT1b) GN=nusB PE=3 SV=1
Length = 128
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-HQIVINEAVDLAKRF 267
H+ ID ++ K W++D+ +E +IL +A E+ V T + INEAV+LAK F
Sbjct: 51 HIEDIDALLVENLKNWRLDRLGN--VERTILRMATFELLYVETIPENVTINEAVELAKSF 108
Query: 268 CDGAAPRIINGCLRTFVR 285
D A +++NG L ++
Sbjct: 109 GDEEAGKLVNGVLGNIIK 126
>sp|Q118A6|NUSB_TRIEI N utilization substance protein B homolog OS=Trichodesmium
erythraeum (strain IMS101) GN=nusB PE=3 SV=1
Length = 207
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 9/97 (9%)
Query: 191 LLRFTRKLLV-----AVVDKWDAHVHIIDKVVPPIWKVWKMDQ-PAGRILELSILHLAMS 244
+L+ T +L V V+ K + + +DK++ W++++ P ++L IL +A++
Sbjct: 105 MLQLTNQLEVRSYAMEVLTKVNGNRKEVDKLLQESIVDWQIERLPR---IDLDILRIAVA 161
Query: 245 EITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
E+ +G + Q+ I+EAV+LAKR+ + ING LR
Sbjct: 162 EMMFIGIQKQVAISEAVELAKRYSGEDGYKFINGVLR 198
>sp|Q0ABQ3|NUSB_ALHEH N utilization substance protein B homolog OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=nusB PE=3 SV=1
Length = 178
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 165 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVW 224
L D EE +EA P+ + L + R LL V A ++ +D+ + P+
Sbjct: 46 LEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVP----ARLNDLDQALEPL---- 97
Query: 225 KMDQPAGRI--LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 281
+D+P + LE ++L L E++ + T +++INEAV+LAKRF + R ING L
Sbjct: 98 -LDRPLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQSHRYINGVLD 156
Query: 282 TFVRNLEGTAN-IEASKASK 300
R L A IEA + +
Sbjct: 157 KLARGLPLRATEIEADRKRR 176
>sp|P74395|NUSB_SYNY3 N utilization substance protein B homolog OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=nusB PE=3 SV=2
Length = 221
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 213 IDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 272
ID+ + W++ + A ++ IL LA++E+ +G ++ INEAV+LAKR+
Sbjct: 137 IDEQLQEAMVDWQLSRLAK--IDQDILRLAIAELDYLGVPQKVAINEAVELAKRYSGQDG 194
Query: 273 PRIINGCLR 281
R ING LR
Sbjct: 195 HRFINGVLR 203
>sp|C1CCJ6|NUSB_STRZJ N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain JJA) GN=nusB PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|A6QBK6|NUSB_SULNB N utilization substance protein B homolog OS=Sulfurovum sp. (strain
NBC37-1) GN=nusB PE=3 SV=1
Length = 130
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 224 WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W D GR+ E +IL L EI V T I+INEAV+LAK D +P+ ING L
Sbjct: 71 WDYD-AIGRV-EKAILRLGAYEILVAKTDRAIIINEAVELAKSLADEKSPQFINGVL 125
>sp|C1CPU1|NUSB_STRZT N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain Taiwan19F-14) GN=nusB PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|C1CIT2|NUSB_STRZP N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain P1031) GN=nusB PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|P65583|NUSB_STRR6 N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=nusB PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|P65582|NUSB_STRPN N utilization substance protein B homolog OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=nusB PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|B8ZLJ7|NUSB_STRPJ N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=nusB
PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|B1I9M4|NUSB_STRPI N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=nusB PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|B5E1P3|NUSB_STRP4 N utilization substance protein B homolog OS=Streptococcus
pneumoniae serotype 19F (strain G54) GN=nusB PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|Q04M45|NUSB_STRP2 N utilization substance protein B homolog OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=nusB
PE=3 SV=1
Length = 140
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 198 LLVAVVDKWDAHVHIIDKVVPPIWKV-WKMDQPAGRILELSILHLAMSEITVVGTRHQIV 256
L+ +V A +DK + K W +++ ++E ++L L + EIT T +
Sbjct: 51 FLIDLVSGVQAKKEELDKQITQHLKAGWTIERLT--LVERNLLRLGVFEITSFDTPQLVA 108
Query: 257 INEAVDLAKRFCDGAAPRIINGCLRTFV 284
+NEA++LAK F D + R ING L FV
Sbjct: 109 VNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|Q818R4|NUSB_BACCR N utilization substance protein B homolog OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=nusB PE=3 SV=1
Length = 130
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
F L+V V+ +A ID+ + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVENKEA----IDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|B7HB53|NUSB_BACC4 N utilization substance protein B homolog OS=Bacillus cereus
(strain B4264) GN=nusB PE=3 SV=1
Length = 130
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
F L+V V+ +A ID+ + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVENKEA----IDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|B7IXH3|NUSB_BACC2 N utilization substance protein B homolog OS=Bacillus cereus
(strain G9842) GN=nusB PE=3 SV=1
Length = 130
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 194 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR- 252
F L+V V+ +A ID+ + K WK+++ + I++ SIL +A+ E+ +
Sbjct: 42 FLESLVVGFVENKEA----IDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIP 95
Query: 253 HQIVINEAVDLAKRFCDGAAPRIINGCL 280
H + INEA+++AK F D + R ING L
Sbjct: 96 HNVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|Q8RAD1|NUSB_THETN N utilization substance protein B homolog OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=nusB PE=3 SV=1
Length = 140
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 209 HVHIIDKVVPPIWKVWKMDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKR 266
H+ ID+ + K W P R+ ++L+IL +M E+ I INEAV++AK+
Sbjct: 54 HLEEIDREIEKYSKDW----PLYRMPRIDLAILRCSMYEMLYGNIPVSISINEAVEIAKK 109
Query: 267 FCDGAAPRIINGCLRTFVRNL---EGTAN 292
+ +P ING L FVR EG AN
Sbjct: 110 YSTDDSPSFINGLLGAFVREKGLEEGEAN 138
>sp|Q8DKS0|NUSB_THEEB N utilization substance protein B homolog OS=Thermosynechococcus
elongatus (strain BP-1) GN=nusB PE=3 SV=1
Length = 212
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 221 WKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 280
W++ ++ Q L+ +I+ +A+ E+ + Q+ INEA++LAKR+ D + R ING L
Sbjct: 142 WQLERLTQ-----LDRAIIEIAVVEMRYLEVAKQVAINEAIELAKRYSDEGSHRFINGVL 196
Query: 281 R 281
R
Sbjct: 197 R 197
>sp|Q8CP37|NUSB_STAES N utilization substance protein B homolog OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=nusB PE=3 SV=1
Length = 129
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 28/129 (21%)
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
T T++EA E ++ D +S L F L+ V D H ++
Sbjct: 22 TDLTIQEAIEFIKDD------------------HSDLDFDFIYWLVTGVKD----HQIVL 59
Query: 214 DKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
D+ + P K W +D+ + RI IL +A EI T ++V+NEAV+L K+F D
Sbjct: 60 DETIKPHLKDWSIDRLLKSDRI----ILRMATFEILHSDTPKKVVVNEAVELTKQFSDDD 115
Query: 272 APRIINGCL 280
+ +NG L
Sbjct: 116 HYKFVNGVL 124
>sp|Q5HP28|NUSB_STAEQ N utilization substance protein B homolog OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=nusB PE=3
SV=1
Length = 129
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 28/129 (21%)
Query: 154 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 213
T T++EA E ++ D +S L F L+ V D H ++
Sbjct: 22 TDLTIQEAIEFIKDD------------------HSDLDFDFIYWLVTGVKD----HQIVL 59
Query: 214 DKVVPPIWKVWKMDQ--PAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGA 271
D+ + P K W +D+ + RI IL +A EI T ++V+NEAV+L K+F D
Sbjct: 60 DETIKPHLKDWSIDRLLKSDRI----ILRMATFEILHSDTPKKVVVNEAVELTKQFSDDD 115
Query: 272 APRIINGCL 280
+ +NG L
Sbjct: 116 HYKFVNGVL 124
>sp|Q6HDY3|NUSB_BACHK N utilization substance protein B homolog OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|Q635A2|NUSB_BACCZ N utilization substance protein B homolog OS=Bacillus cereus
(strain ZK / E33L) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|B9IXH5|NUSB_BACCQ N utilization substance protein B homolog OS=Bacillus cereus
(strain Q1) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|B7HNU5|NUSB_BACC7 N utilization substance protein B homolog OS=Bacillus cereus
(strain AH187) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|C1ERQ5|NUSB_BACC3 N utilization substance protein B homolog OS=Bacillus cereus
(strain 03BB102) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|B7JM33|NUSB_BACC0 N utilization substance protein B homolog OS=Bacillus cereus
(strain AH820) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|Q81M49|NUSB_BACAN N utilization substance protein B homolog OS=Bacillus anthracis
GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|A0RIH4|NUSB_BACAH N utilization substance protein B homolog OS=Bacillus thuringiensis
(strain Al Hakam) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|C3LJV6|NUSB_BACAC N utilization substance protein B homolog OS=Bacillus anthracis
(strain CDC 684 / NRRL 3495) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|C3P7W1|NUSB_BACAA N utilization substance protein B homolog OS=Bacillus anthracis
(strain A0248) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
>sp|Q731B1|NUSB_BACC1 N utilization substance protein B homolog OS=Bacillus cereus
(strain ATCC 10987) GN=nusB PE=3 SV=1
Length = 130
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 195 TRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTR-H 253
T + L ++V + + +ID+ + K WK+++ + I++ SIL +A+ E+ + H
Sbjct: 39 TNEFLESLVVGFVENKEVIDEAIRQNLKKWKLERIS--IVDRSILRVAVYEMKYMEEIPH 96
Query: 254 QIVINEAVDLAKRFCDGAAPRIINGCL 280
+ INEA+++AK F D + R ING L
Sbjct: 97 NVTINEAIEIAKTFGDEESRRFINGVL 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,404,006
Number of Sequences: 539616
Number of extensions: 3883856
Number of successful extensions: 11624
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 11442
Number of HSP's gapped (non-prelim): 392
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)