Query 021860
Match_columns 306
No_of_seqs 181 out of 1615
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r2d_A Protein NUSB, N utiliza 100.0 1.6E-33 5.5E-38 240.7 12.0 141 93-295 2-143 (149)
2 1tzv_A NUSB protein, N utiliza 100.0 1.2E-32 4E-37 232.4 12.6 134 94-291 3-138 (142)
3 3d3b_A Protein NUSB, N utiliza 100.0 2.7E-32 9.3E-37 229.9 12.6 131 95-289 7-138 (141)
4 1eyv_A NUSB protein, N-utilizi 100.0 3.5E-31 1.2E-35 227.8 11.5 135 93-287 7-142 (156)
5 1sqg_A SUN protein, FMU protei 99.9 3.4E-23 1.2E-27 199.5 13.0 124 98-287 6-129 (429)
6 2yxl_A PH0851 protein, 450AA l 99.9 6.5E-23 2.2E-27 199.2 10.6 131 91-286 5-140 (450)
7 1q8c_A Hypothetical protein Mg 42.1 73 0.0025 26.5 6.8 50 234-283 101-150 (151)
8 2zc2_A DNAD-like replication p 17.3 74 0.0025 23.0 2.4 32 254-286 37-68 (78)
9 1v54_E Cytochrome C oxidase po 16.0 53 0.0018 26.8 1.4 50 234-283 24-75 (109)
10 1s7z_A Gene 0.3 protein; all h 11.4 81 0.0028 25.7 1.2 32 234-266 78-111 (117)
No 1
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=100.00 E-value=1.6e-33 Score=240.68 Aligned_cols=141 Identities=25% Similarity=0.415 Sum_probs=115.1
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHH
Q 021860 93 FCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEES 172 (306)
Q Consensus 93 ~~~Rr~ARe~Avq~LYq~e~~g~~~~e~le~~l~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~ 172 (306)
|+.|+.+|+.|+|+||+++.+|.+++++++.++....
T Consensus 2 m~~R~~aR~~A~q~L~~~~~~~~~~~~~l~~~~~~~~------------------------------------------- 38 (149)
T 3r2d_A 2 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKN------------------------------------------- 38 (149)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-------------------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcc-------------------------------------------
Confidence 5678999999999999999999999999887654100
Q ss_pred HHHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCcCCCCCCCcccHHHHHHHHHHHHhhhcc-CC
Q 021860 173 AIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GT 251 (306)
Q Consensus 173 ~~~~e~~~~~p~~~~~~~Dr~fa~eLV~GVlr~~~~LD~lId~lL~k~~k~~rldrl~~~~VdraILRlAlYELlf~-di 251 (306)
..++.|++|+++|++||++|+..||++|++++ ++|+ +++++ +++++|||+|+|||+|+ ++
T Consensus 39 -------------~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~---~~rl~--~~~r~iLrla~yEl~~~~~i 99 (149)
T 3r2d_A 39 -------------IKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL-KGWS---IDRLG--YVERNALRLGVAELIFLKSK 99 (149)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC----C---GGGSC--HHHHHHHHHHHHHHTTSCCS
T ss_pred -------------cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCC---ccccC--HHHHHHHHHHHHHHHHcCCC
Confidence 02456899999999999999999999999998 4554 45554 58899999999999997 89
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCCchhHHHhHHHhhhhccccccc
Q 021860 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEA 295 (306)
Q Consensus 252 P~~VaINEAVELAKkyg~~~s~kFVNGVLrki~R~~~~~e~~~~ 295 (306)
|++|+|||||+|||.|+++++++|||||||++.++..+.+.+.+
T Consensus 100 P~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~~~ 143 (149)
T 3r2d_A 100 EPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEK 143 (149)
T ss_dssp CHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC--------
T ss_pred CCeehHHHHHHHHHHhCCCCccccchHHhhHHHHhhcccccccC
Confidence 99999999999999999999999999999999999887777644
No 2
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=99.98 E-value=1.2e-32 Score=232.40 Aligned_cols=134 Identities=17% Similarity=0.346 Sum_probs=115.1
Q ss_pred CCchHHHHHHHHHHHHHHhcCC-ChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHH
Q 021860 94 CSPRAARELALLVVYAACLEGS-DPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEES 172 (306)
Q Consensus 94 ~~Rr~ARe~Avq~LYq~e~~g~-~~~e~le~~l~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~ 172 (306)
.+|+.+|+.|+|+||+++.+|. ++.++++.++. . .
T Consensus 3 ~~r~~aR~~A~~~L~~~~~~~~~~~~~~l~~~~~-~-~------------------------------------------ 38 (142)
T 1tzv_A 3 TPRRRMRLAVFKALFQHEFRRDEDLEQILEEILD-E-T------------------------------------------ 38 (142)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHCC-T-T------------------------------------------
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-h-c------------------------------------------
Confidence 3588999999999999999998 88888765432 0 0
Q ss_pred HHHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCcCCCCCCCcccHHHHHHHHHHHHhhhcc-CC
Q 021860 173 AIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GT 251 (306)
Q Consensus 173 ~~~~e~~~~~p~~~~~~~Dr~fa~eLV~GVlr~~~~LD~lId~lL~k~~k~~rldrl~~~~VdraILRlAlYELlf~-di 251 (306)
+++.|++|+++|++||++|+..||++|++++++ |+ +++++ +++++|||+|+|||+|+ ++
T Consensus 39 --------------l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l~~-w~---l~rl~--~~~r~iLrla~yEl~~~~~i 98 (142)
T 1tzv_A 39 --------------YDKKAKEDARRYIRGIKENLSMIDDLISRYLEK-WS---LNRLS--VVDRNVLRLATYELLFEKDI 98 (142)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSS-SC---GGGSC--HHHHHHHHHHHHHHHHCTTS
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC---hHHCC--HHHHHHHHHHHHHHHhcCCC
Confidence 234689999999999999999999999999863 54 55555 58999999999999997 79
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCCchhHHHhHHHhhhhccc
Q 021860 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 291 (306)
Q Consensus 252 P~~VaINEAVELAKkyg~~~s~kFVNGVLrki~R~~~~~e 291 (306)
|++|+|||||+|||+|+++++++|||||||++.++.+..+
T Consensus 99 P~~vaInEaVelaK~~~~~~~~~fVNgVL~~i~r~~~~~~ 138 (142)
T 1tzv_A 99 PIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKE 138 (142)
T ss_dssp CHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGG
T ss_pred CchhHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999876543
No 3
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=99.98 E-value=2.7e-32 Score=229.91 Aligned_cols=131 Identities=21% Similarity=0.278 Sum_probs=113.3
Q ss_pred CchHHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHHHH
Q 021860 95 SPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAI 174 (306)
Q Consensus 95 ~Rr~ARe~Avq~LYq~e~~g~~~~e~le~~l~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~ 174 (306)
+|+.+|+.|+|+||+++++|.+..+++..++.. + .
T Consensus 7 ~R~~aR~~A~~~L~~~~~~~~~~~~~~~~~~~~---------------~---~--------------------------- 41 (141)
T 3d3b_A 7 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE---------------Q---D--------------------------- 41 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------S---C---------------------------
T ss_pred hHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHh---------------c---c---------------------------
Confidence 588999999999999999998888887655431 0 0
Q ss_pred HHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCcCCCCCCCcccHHHHHHHHHHHHhhhcc-CCCh
Q 021860 175 EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GTRH 253 (306)
Q Consensus 175 ~~e~~~~~p~~~~~~~Dr~fa~eLV~GVlr~~~~LD~lId~lL~k~~k~~rldrl~~~~VdraILRlAlYELlf~-diP~ 253 (306)
+++.|++|+++|++||++|+..||++|+++++ |+ +++++ +++++|||+|+|||+|+ ++|+
T Consensus 42 ------------l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l~--~~---l~rl~--~~~r~iLrla~yEll~~~~iP~ 102 (141)
T 3d3b_A 42 ------------VKDVDVLYFRELLAGVATNTAYLDGLMKPYLS--RL---LEELG--QVEKAVLRIALYELSKRSDVPY 102 (141)
T ss_dssp ------------CTTSCHHHHHHHHHHHHHTHHHHHHHHGGGGT--TC---SSCCC--HHHHHHHHHHHHHHHHCTTSCH
T ss_pred ------------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC--CC---HHHcC--HHHHHHHHHHHHHHHhCCCCCc
Confidence 12347899999999999999999999999985 54 45555 58899999999999996 7999
Q ss_pred hhHHHHHHHHHHhhCCCCCCCchhHHHhHHHhhhhc
Q 021860 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 289 (306)
Q Consensus 254 ~VaINEAVELAKkyg~~~s~kFVNGVLrki~R~~~~ 289 (306)
+|+|||||+|||+|+++++++|||||||++.+++++
T Consensus 103 ~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~ 138 (141)
T 3d3b_A 103 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 138 (141)
T ss_dssp HHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998754
No 4
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=99.97 E-value=3.5e-31 Score=227.80 Aligned_cols=135 Identities=21% Similarity=0.315 Sum_probs=108.6
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHH
Q 021860 93 FCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEES 172 (306)
Q Consensus 93 ~~~Rr~ARe~Avq~LYq~e~~g~~~~e~le~~l~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~ 172 (306)
+.+|+.+|+.|+|+||+++.+|.+..+++..... +..
T Consensus 7 ~~~R~~aR~~Alq~L~~~~~~~~~~~~~l~~~~~-------------l~~------------------------------ 43 (156)
T 1eyv_A 7 VRGRHQARKRAVALLFEAEVRGISAAEVVDTRAA-------------LAE------------------------------ 43 (156)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH-------------HHH------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-------------ccc------------------------------
Confidence 3478999999999999999999888887664321 000
Q ss_pred HHHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCcCCCCCCCcccHHHHHHHHHHHHhhhcc-CC
Q 021860 173 AIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV-GT 251 (306)
Q Consensus 173 ~~~~e~~~~~p~~~~~~~Dr~fa~eLV~GVlr~~~~LD~lId~lL~k~~k~~rldrl~~~~VdraILRlAlYELlf~-di 251 (306)
.+ ...+.+++|+++|++||++|+..||++|+++++ +|+ +++++ +++++|||+|+|||+|+ ++
T Consensus 44 ---~d--------~~~~~~~~~~~~lv~gvl~~~~~lD~~i~~~l~-~w~---l~rl~--~~~r~iLrla~yel~~~~~i 106 (156)
T 1eyv_A 44 ---AK--------PDIARLHPYTAAVARGVSEHAAHIDDLITAHLR-GWT---LDRLP--AVDRAILRVSVWELLHAADV 106 (156)
T ss_dssp ---HC--------TTSCCCCHHHHHHHHHHHHTHHHHHHHHHTTST-TCC---GGGSC--HHHHHHHHHHHHHHHHCTTS
T ss_pred ---cc--------cccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CCC---hhhCC--HHHHHHHHHHHHHHHHcCCC
Confidence 00 001235899999999999999999999999984 454 55555 58899999999999997 79
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCCchhHHHhHHHhhh
Q 021860 252 RHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287 (306)
Q Consensus 252 P~~VaINEAVELAKkyg~~~s~kFVNGVLrki~R~~ 287 (306)
|++++|||||+|||+|+++++++|||||||++.+..
T Consensus 107 P~~v~InEaVelak~~~~~~~~~fVNgVLr~i~r~~ 142 (156)
T 1eyv_A 107 PEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLVT 142 (156)
T ss_dssp CHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC---
T ss_pred CchhHHHHHHHHHHHhCCCccccchHHHHHHHHHhH
Confidence 999999999999999999999999999999998653
No 5
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.89 E-value=3.4e-23 Score=199.52 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHHHHHHh
Q 021860 98 AARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAE 177 (306)
Q Consensus 98 ~ARe~Avq~LYq~e~~g~~~~e~le~~l~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~e 177 (306)
.+|+.|+|+||+++.+|.++++++......
T Consensus 6 ~aR~~A~~~L~~~~~~~~~~~~~l~~~~~~-------------------------------------------------- 35 (429)
T 1sqg_A 6 NLRSMAAQAVEQVVEQGQSLSNILPPLQQK-------------------------------------------------- 35 (429)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHTT--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhh--------------------------------------------------
Confidence 489999999999999998888887642210
Q ss_pred hhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCcCCCCCCCcccHHHHHHHHHHHHhhhccCCChhhHH
Q 021860 178 VLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVI 257 (306)
Q Consensus 178 ~~~~~p~~~~~~~Dr~fa~eLV~GVlr~~~~LD~lId~lL~k~~k~~rldrl~~~~VdraILRlAlYELlf~diP~~VaI 257 (306)
.+.+|++|+++||+||++|+..||++|++++++++ ++++ +++++|||+|+|||+|+++|++++|
T Consensus 36 ---------~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~~~~-----~~~~--~~~~~iLrl~~yel~~~~~p~~~~i 99 (429)
T 1sqg_A 36 ---------VSDKDKALLQELCFGVLRTLSQLDWLINKLMARPM-----TGKQ--RTVHYLIMVGLYQLLYTRIPPHAAL 99 (429)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-----CGGG--HHHHHHHHHHHHHHHHCCSCHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCh-----hhcC--HHHHHHHHHHHHHHhhCCCCchHhh
Confidence 24468999999999999999999999999986533 4444 4889999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCchhHHHhHHHhhh
Q 021860 258 NEAVDLAKRFCDGAAPRIINGCLRTFVRNL 287 (306)
Q Consensus 258 NEAVELAKkyg~~~s~kFVNGVLrki~R~~ 287 (306)
||+|++||+|+++++.+|||||||++.+..
T Consensus 100 neaVelak~~~~~~~~~fvN~vL~~~~r~~ 129 (429)
T 1sqg_A 100 AETVEGAIAIKRPQLKGLINGVLRQFQRQQ 129 (429)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHhh
Confidence 999999999999999999999999999864
No 6
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.88 E-value=6.5e-23 Score=199.25 Aligned_cols=131 Identities=10% Similarity=-0.059 Sum_probs=111.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhH
Q 021860 91 GRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEE 170 (306)
Q Consensus 91 ~~~~~Rr~ARe~Avq~LYq~e~~g~~~~e~le~~l~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~~~~~e~~~~~~~~~~ 170 (306)
.|..+++.+|+.|+++||+++.+|...+.++..++.. +.
T Consensus 5 ~~~~~~~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~------------------~~----------------------- 43 (450)
T 2yxl_A 5 KKKLSIPPKGIRAIIEAIRLGEIIKPSQYAKREAFKK------------------HD----------------------- 43 (450)
T ss_dssp -CCBCCCHHHHHHHHHHHHHTTTSSSTHHHHHHHHHH------------------TT-----------------------
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHh------------------cc-----------------------
Confidence 3445678899999999999999888788877765441 00
Q ss_pred HHHHHHhhhcCCCcccccH-HHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCcCCCCCCCcccHHHHHHHHHHHHhhhcc
Q 021860 171 ESAIEAEVLSAPPKLVYSK-LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVV 249 (306)
Q Consensus 171 ~~~~~~e~~~~~p~~~~~~-~Dr~fa~eLV~GVlr~~~~LD~lId~lL~k~~k~~rldrl~~~~VdraILRlAlYELlf~ 249 (306)
++. +|++|+++||+||++|+..||++|++++++++ ++++ +++++|||+|+|||+|
T Consensus 44 ----------------l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~~~~-----~~~~--~~~~~iLrla~yell~- 99 (450)
T 2yxl_A 44 ----------------VEEAWLNRVLTMIFYDIMKKQGLIDKVIKEIVGVTP-----LILD--PWLRAALRVAVDIALF- 99 (450)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCG-----GGSC--HHHHHHHHHHHHHHHH-
T ss_pred ----------------CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCh-----hhcC--HHHHHHHHHHHHHHhc-
Confidence 133 68999999999999999999999999986543 3343 4889999999999999
Q ss_pred CCChhhHHH----HHHHHHHhhCCCCCCCchhHHHhHHHhh
Q 021860 250 GTRHQIVIN----EAVDLAKRFCDGAAPRIINGCLRTFVRN 286 (306)
Q Consensus 250 diP~~VaIN----EAVELAKkyg~~~s~kFVNGVLrki~R~ 286 (306)
++|++++|| |+|++||.|+++++++|||||||++.+.
T Consensus 100 ~ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~ 140 (450)
T 2yxl_A 100 HDPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEY 140 (450)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC
T ss_pred CCCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhc
Confidence 999999999 9999999999888999999999999886
No 7
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=42.12 E-value=73 Score=26.50 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhccCCChhhHHHHHHHHHHhhCCCCCCCchhHHHhHH
Q 021860 234 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 283 (306)
Q Consensus 234 VdraILRlAlYELlf~diP~~VaINEAVELAKkyg~~~s~kFVNGVLrki 283 (306)
+-.+++..|+.|-.-..+..+..|.||+-+.-.|+.....+=-+|.||++
T Consensus 101 lt~avilcalseq~a~~tdkplliseallimdhysq~~ekkqthalldkl 150 (151)
T 1q8c_A 101 LTTAVVLCALSEQKAHNTDKPLLISEALLIMDHYSQGAEKKQTHALLDKL 150 (151)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCCTTSCSCTTTSCC
T ss_pred HHHHHHHHHhhHHHhhcCCCchhHHHHHHHHHHhhhchhHHHHHHHHHhh
Confidence 33777777888876667899999999999999998777777778888775
No 8
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=17.35 E-value=74 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCCchhHHHhHHHhh
Q 021860 254 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 286 (306)
Q Consensus 254 ~VaINEAVELAKkyg~~~s~kFVNGVLrki~R~ 286 (306)
.-+|++|++.|-.. +..+.++|++||.+=.+.
T Consensus 37 ~elI~~A~~~a~~~-~~~s~~Yi~~Il~~W~~~ 68 (78)
T 2zc2_A 37 PDLVRSALREAVFN-GKTNWNYIQAILRNWRHE 68 (78)
T ss_dssp HHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHc
Confidence 46888888888654 345689999999998764
No 9
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=16.03 E-value=53 Score=26.81 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhccC-CChhhHHHHHHHHHHhhCC-CCCCCchhHHHhHH
Q 021860 234 LELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCD-GAAPRIINGCLRTF 283 (306)
Q Consensus 234 VdraILRlAlYELlf~d-iP~~VaINEAVELAKkyg~-~~s~kFVNGVLrki 283 (306)
+|..-+|-|+-.|.-.+ ||.+.||.-|+..|++..+ .-+.+|+-||=.|.
T Consensus 24 iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 24 IDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 45567899998888654 9999999999999998753 33566666666554
No 10
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} SCOP: a.159.3.1 PDB: 2y7c_D
Probab=11.36 E-value=81 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhccC--CChhhHHHHHHHHHHh
Q 021860 234 LELSILHLAMSEITVVG--TRHQIVINEAVDLAKR 266 (306)
Q Consensus 234 VdraILRlAlYELlf~d--iP~~VaINEAVELAKk 266 (306)
| .-|||.-+||-++.+ .+....+||+++-...
T Consensus 78 V-~~ILqaRIyE~L~ndl~~d~Ed~~~~y~ee~e~ 111 (117)
T 1s7z_A 78 V-IRILQARIYEQLTIDLWEDAEDLLNEYLEEVEE 111 (117)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred H-HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 5 779999999988865 7899999999975443
Done!