Query 021862
Match_columns 306
No_of_seqs 105 out of 1073
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01087 murD UDP-N-acetylmur 100.0 2.1E-53 4.5E-58 404.5 31.7 280 4-305 65-344 (433)
2 COG0771 MurD UDP-N-acetylmuram 100.0 1.9E-53 4.1E-58 396.2 29.6 282 4-306 72-357 (448)
3 PRK01368 murD UDP-N-acetylmura 100.0 3.5E-53 7.7E-58 403.2 31.2 284 4-305 66-354 (454)
4 PRK04663 murD UDP-N-acetylmura 100.0 2.1E-52 4.6E-57 397.7 30.8 279 4-305 71-351 (438)
5 PRK04308 murD UDP-N-acetylmura 100.0 1E-51 2.2E-56 394.1 31.2 283 4-305 70-355 (445)
6 PRK03803 murD UDP-N-acetylmura 100.0 1.3E-51 2.7E-56 393.8 31.2 280 4-305 71-357 (448)
7 PRK01710 murD UDP-N-acetylmura 100.0 2.4E-51 5.2E-56 392.4 30.4 282 4-305 80-362 (458)
8 PRK03369 murD UDP-N-acetylmura 100.0 4.4E-51 9.6E-56 392.8 30.5 279 4-305 73-362 (488)
9 PRK00141 murD UDP-N-acetylmura 100.0 1.3E-50 2.8E-55 388.3 31.8 284 4-304 77-367 (473)
10 PRK02472 murD UDP-N-acetylmura 100.0 2E-50 4.3E-55 385.6 30.9 284 4-304 71-354 (447)
11 PRK01390 murD UDP-N-acetylmura 100.0 4.2E-50 9.1E-55 384.5 30.7 286 4-305 68-366 (460)
12 PRK02705 murD UDP-N-acetylmura 100.0 5.9E-50 1.3E-54 383.5 31.6 286 4-304 71-360 (459)
13 PRK03806 murD UDP-N-acetylmura 100.0 6.3E-50 1.4E-54 381.1 31.4 280 4-305 68-350 (438)
14 PRK04690 murD UDP-N-acetylmura 100.0 6.3E-50 1.4E-54 382.9 31.5 283 4-305 72-359 (468)
15 PRK01438 murD UDP-N-acetylmura 100.0 2.1E-49 4.6E-54 381.6 30.6 287 4-305 81-379 (480)
16 PRK14106 murD UDP-N-acetylmura 100.0 4.4E-49 9.4E-54 376.6 31.1 287 4-304 71-358 (450)
17 COG0773 MurC UDP-N-acetylmuram 100.0 4.3E-49 9.4E-54 363.5 29.1 278 4-299 69-359 (459)
18 TIGR01081 mpl UDP-N-acetylmura 100.0 6.5E-49 1.4E-53 374.9 30.5 283 4-304 63-361 (448)
19 PRK00421 murC UDP-N-acetylmura 100.0 4.4E-49 9.5E-54 377.3 28.9 283 4-304 69-364 (461)
20 TIGR01082 murC UDP-N-acetylmur 100.0 1.1E-48 2.3E-53 373.4 29.7 283 4-304 61-358 (448)
21 PRK02006 murD UDP-N-acetylmura 100.0 6.3E-48 1.4E-52 372.6 30.4 290 4-305 72-400 (498)
22 PRK10773 murF UDP-N-acetylmura 100.0 1.9E-48 4.2E-53 371.8 25.3 282 5-303 65-363 (453)
23 TIGR01143 murF UDP-N-acetylmur 100.0 2.4E-47 5.2E-52 361.0 25.4 267 22-304 54-335 (417)
24 PRK14093 UDP-N-acetylmuramoyla 100.0 1E-45 2.2E-50 355.2 25.2 271 22-302 88-378 (479)
25 COG0770 MurF UDP-N-acetylmuram 100.0 9.8E-46 2.1E-50 347.5 23.4 266 23-303 84-365 (451)
26 PRK03815 murD UDP-N-acetylmura 100.0 4.3E-45 9.3E-50 342.3 25.6 255 4-305 57-311 (401)
27 PRK14573 bifunctional D-alanyl 100.0 8.3E-45 1.8E-49 368.4 29.3 275 4-302 66-352 (809)
28 PRK00139 murE UDP-N-acetylmura 100.0 3E-44 6.5E-49 343.7 24.1 264 23-301 74-357 (460)
29 TIGR01085 murE UDP-N-acetylmur 100.0 4.6E-44 1E-48 343.0 23.6 273 24-304 65-370 (464)
30 PRK11929 putative bifunctional 100.0 2.8E-43 6.1E-48 363.7 25.7 267 23-304 584-874 (958)
31 PRK00683 murD UDP-N-acetylmura 100.0 5E-42 1.1E-46 324.7 24.8 261 4-305 62-325 (418)
32 PRK11930 putative bifunctional 100.0 2.6E-42 5.6E-47 350.9 24.4 265 22-304 87-370 (822)
33 PRK14022 UDP-N-acetylmuramoyla 100.0 1.8E-42 4E-47 333.1 20.1 262 28-303 94-376 (481)
34 PRK11929 putative bifunctional 100.0 7E-42 1.5E-46 353.4 23.8 271 26-302 94-393 (958)
35 TIGR01499 folC folylpolyglutam 100.0 1.2E-40 2.6E-45 313.4 21.6 250 41-304 16-316 (397)
36 TIGR02068 cya_phycin_syn cyano 100.0 8.7E-39 1.9E-43 324.5 24.0 259 41-304 477-768 (864)
37 COG0769 MurE UDP-N-acetylmuram 100.0 1.3E-38 2.8E-43 302.5 22.8 267 29-303 76-369 (475)
38 PLN02913 dihydrofolate synthet 100.0 6.4E-37 1.4E-41 294.8 22.8 269 29-305 58-408 (510)
39 PRK10846 bifunctional folylpol 100.0 8.5E-37 1.8E-41 288.7 22.8 255 28-302 31-333 (416)
40 COG0285 FolC Folylpolyglutamat 100.0 7.3E-37 1.6E-41 284.4 21.1 259 29-305 27-341 (427)
41 PLN02881 tetrahydrofolylpolygl 100.0 1.2E-33 2.5E-38 269.0 21.8 235 28-290 41-349 (530)
42 PRK14016 cyanophycin synthetas 100.0 8.3E-34 1.8E-38 283.3 13.4 251 7-261 445-726 (727)
43 PF08245 Mur_ligase_M: Mur lig 100.0 2.1E-32 4.6E-37 231.8 15.3 180 48-235 1-188 (188)
44 KOG2525 Folylpolyglutamate syn 100.0 2.5E-28 5.5E-33 224.5 14.5 241 41-304 70-378 (496)
45 PF02875 Mur_ligase_C: Mur lig 98.8 8E-09 1.7E-13 76.8 4.0 47 255-303 1-51 (91)
46 COG1703 ArgK Putative periplas 95.5 0.084 1.8E-06 47.4 8.7 118 41-169 49-204 (323)
47 PRK09435 membrane ATPase/prote 92.6 1.1 2.4E-05 41.2 10.0 36 41-76 54-91 (332)
48 cd01983 Fer4_NifH The Fer4_Nif 92.6 0.65 1.4E-05 33.4 7.0 30 46-75 2-33 (99)
49 TIGR03172 probable selenium-de 92.1 0.15 3.2E-06 44.5 3.4 33 45-77 1-33 (232)
50 PRK15453 phosphoribulokinase; 90.5 0.39 8.5E-06 43.1 4.4 29 41-69 3-33 (290)
51 COG1763 MobB Molybdopterin-gua 89.6 0.38 8.2E-06 39.5 3.4 35 43-77 2-38 (161)
52 COG4240 Predicted kinase [Gene 89.2 0.54 1.2E-05 40.7 4.1 52 21-73 29-83 (300)
53 COG0132 BioD Dethiobiotin synt 88.8 0.53 1.2E-05 40.7 3.8 31 43-73 2-35 (223)
54 TIGR03029 EpsG chain length de 88.7 0.85 1.8E-05 40.6 5.3 41 41-81 101-145 (274)
55 PRK13869 plasmid-partitioning 88.4 0.59 1.3E-05 44.3 4.2 34 42-75 120-156 (405)
56 PHA02519 plasmid partition pro 88.2 0.62 1.3E-05 43.9 4.2 34 42-75 105-141 (387)
57 COG0769 MurE UDP-N-acetylmuram 88.2 0.22 4.7E-06 48.3 1.1 95 41-137 62-160 (475)
58 PRK13232 nifH nitrogenase redu 88.1 0.62 1.3E-05 41.5 4.0 31 44-74 2-34 (273)
59 PF00485 PRK: Phosphoribulokin 87.9 0.58 1.3E-05 39.4 3.5 27 45-71 1-29 (194)
60 PRK13705 plasmid-partitioning 87.6 0.69 1.5E-05 43.6 4.1 34 42-75 105-141 (388)
61 PRK00652 lpxK tetraacyldisacch 87.5 0.7 1.5E-05 42.5 4.0 34 42-75 48-85 (325)
62 TIGR01007 eps_fam capsular exo 87.3 1.1 2.4E-05 37.9 4.9 34 41-74 15-51 (204)
63 COG1936 Predicted nucleotide k 86.9 0.66 1.4E-05 38.4 3.1 25 45-73 2-28 (180)
64 COG2403 Predicted GTPase [Gene 85.8 0.82 1.8E-05 42.3 3.4 32 42-73 125-159 (449)
65 PRK13235 nifH nitrogenase redu 85.7 0.99 2.2E-05 40.2 4.0 31 44-74 2-34 (274)
66 TIGR00554 panK_bact pantothena 85.4 1.2 2.6E-05 40.2 4.3 27 42-68 61-89 (290)
67 COG1072 CoaA Panthothenate kin 85.4 1.2 2.7E-05 39.6 4.2 31 41-71 80-112 (283)
68 PRK14494 putative molybdopteri 85.3 1.1 2.3E-05 39.1 3.8 33 43-75 1-35 (229)
69 PHA02518 ParA-like protein; Pr 85.0 1.1 2.5E-05 37.8 3.8 30 45-74 2-34 (211)
70 KOG1324 Dihydrofolate reductas 85.0 1.1 2.4E-05 37.1 3.4 14 250-263 61-74 (190)
71 COG2894 MinD Septum formation 84.8 0.93 2E-05 39.1 3.1 38 44-81 3-44 (272)
72 TIGR03453 partition_RepA plasm 84.7 1.2 2.6E-05 41.9 4.2 33 42-74 103-138 (387)
73 COG0552 FtsY Signal recognitio 84.5 1.2 2.6E-05 40.8 3.8 35 42-76 138-174 (340)
74 PRK10037 cell division protein 84.2 1.3 2.8E-05 38.9 3.9 32 44-75 2-36 (250)
75 TIGR03371 cellulose_yhjQ cellu 84.2 1.3 2.9E-05 38.4 4.0 31 44-74 2-35 (246)
76 TIGR03018 pepcterm_TyrKin exop 84.0 1.5 3.2E-05 37.3 4.1 34 41-74 33-70 (207)
77 cd02029 PRK_like Phosphoribulo 83.9 1.2 2.5E-05 39.8 3.4 28 45-72 1-30 (277)
78 cd02040 NifH NifH gene encodes 83.6 0.9 1.9E-05 40.1 2.7 26 49-74 9-34 (270)
79 cd03116 MobB Molybdenum is an 83.1 1.8 3.8E-05 35.5 4.0 32 43-74 1-34 (159)
80 PRK05439 pantothenate kinase; 83.0 1.7 3.8E-05 39.6 4.3 35 41-75 84-122 (311)
81 PRK00784 cobyric acid synthase 82.6 1.5 3.2E-05 42.8 3.9 30 44-73 3-35 (488)
82 PRK14493 putative bifunctional 82.6 1.7 3.7E-05 38.9 4.0 31 43-74 1-33 (274)
83 PF00448 SRP54: SRP54-type pro 82.5 1.1 2.3E-05 38.1 2.6 30 46-76 7-36 (196)
84 PRK14974 cell division protein 82.3 1.9 4.2E-05 39.8 4.4 35 42-76 139-175 (336)
85 PF03308 ArgK: ArgK protein; 82.0 2.7 5.8E-05 37.2 4.9 115 41-167 27-180 (266)
86 PF01656 CbiA: CobQ/CobB/MinD/ 82.0 1.3 2.8E-05 36.7 3.0 30 45-74 3-32 (195)
87 PF06564 YhjQ: YhjQ protein; 81.7 1.4 3E-05 38.7 3.1 29 45-73 6-34 (243)
88 PF03205 MobB: Molybdopterin g 81.6 1.9 4.1E-05 34.4 3.6 30 44-73 1-32 (140)
89 PRK06696 uridine kinase; Valid 81.5 2.9 6.4E-05 36.0 5.1 34 41-74 20-55 (223)
90 PRK09270 nucleoside triphospha 80.9 1.8 3.9E-05 37.5 3.6 43 28-71 19-63 (229)
91 TIGR00064 ftsY signal recognit 80.3 2.3 4.9E-05 38.1 4.0 35 42-76 71-107 (272)
92 PRK07667 uridine kinase; Provi 80.2 2.6 5.7E-05 35.4 4.2 32 42-73 16-49 (193)
93 KOG3347 Predicted nucleotide k 80.0 1.7 3.7E-05 35.2 2.7 26 42-67 6-33 (176)
94 PRK14495 putative molybdopteri 79.8 2.1 4.6E-05 40.8 3.8 32 43-74 1-34 (452)
95 cd02117 NifH_like This family 79.8 1.8 3.8E-05 37.0 3.0 30 45-74 2-33 (212)
96 cd02025 PanK Pantothenate kina 79.6 2.2 4.8E-05 36.8 3.6 23 45-67 1-25 (220)
97 cd02032 Bchl_like This family 79.6 1.6 3.5E-05 38.6 2.8 29 46-74 3-33 (267)
98 cd02028 UMPK_like Uridine mono 79.4 2.2 4.8E-05 35.5 3.4 29 45-73 1-31 (179)
99 CHL00175 minD septum-site dete 79.3 2.6 5.7E-05 37.5 4.2 33 42-74 14-49 (281)
100 PRK10416 signal recognition pa 79.3 2.6 5.6E-05 38.6 4.1 35 42-76 113-149 (318)
101 PRK12374 putative dithiobiotin 79.1 2.5 5.4E-05 36.7 3.8 30 45-74 4-36 (231)
102 PF13500 AAA_26: AAA domain; P 79.0 2.2 4.8E-05 35.9 3.4 30 44-73 1-33 (199)
103 cd02042 ParA ParA and ParB of 78.9 8 0.00017 28.5 6.1 47 45-109 4-50 (104)
104 PRK01077 cobyrinic acid a,c-di 78.8 2.6 5.6E-05 40.6 4.2 31 43-73 3-36 (451)
105 TIGR01281 DPOR_bchL light-inde 78.6 1.7 3.8E-05 38.4 2.7 26 49-74 8-33 (268)
106 TIGR00176 mobB molybdopterin-g 78.5 2.3 5E-05 34.5 3.2 31 45-75 1-33 (155)
107 PRK10751 molybdopterin-guanine 77.6 3.2 6.9E-05 34.5 3.8 34 42-75 5-40 (173)
108 PRK13185 chlL protochlorophyll 77.6 2 4.3E-05 38.1 2.8 31 44-74 3-35 (270)
109 cd03109 DTBS Dethiobiotin synt 77.5 4 8.7E-05 32.2 4.3 45 47-109 4-49 (134)
110 PRK13230 nitrogenase reductase 77.2 1.9 4.1E-05 38.5 2.6 31 44-74 2-34 (279)
111 CHL00072 chlL photochlorophyll 77.1 2 4.4E-05 38.7 2.8 26 49-74 8-33 (290)
112 cd02033 BchX Chlorophyllide re 77.0 3.4 7.3E-05 38.1 4.2 35 41-75 29-65 (329)
113 TIGR01968 minD_bact septum sit 76.5 3.1 6.8E-05 36.3 3.8 31 44-74 2-35 (261)
114 TIGR00455 apsK adenylylsulfate 76.5 6.2 0.00013 32.7 5.4 40 32-72 8-49 (184)
115 cd02036 MinD Bacterial cell di 76.4 2.7 5.8E-05 34.3 3.1 30 46-75 5-34 (179)
116 COG1855 ATPase (PilT family) [ 76.3 2.4 5.2E-05 40.5 3.0 76 42-128 262-339 (604)
117 COG1618 Predicted nucleotide k 76.2 3.4 7.4E-05 34.0 3.5 29 44-72 6-36 (179)
118 PRK12723 flagellar biosynthesi 75.9 5.5 0.00012 37.6 5.3 33 44-76 175-213 (388)
119 TIGR02016 BchX chlorophyllide 75.3 2.4 5.2E-05 38.4 2.7 26 49-74 8-33 (296)
120 TIGR01287 nifH nitrogenase iro 75.3 2.4 5.2E-05 37.7 2.7 30 45-74 2-33 (275)
121 PRK09841 cryptic autophosphory 75.2 4.7 0.0001 41.4 5.1 41 41-81 529-573 (726)
122 cd02037 MRP-like MRP (Multiple 75.0 2.7 5.9E-05 34.3 2.8 26 49-74 8-33 (169)
123 PRK03846 adenylylsulfate kinas 74.9 6.8 0.00015 33.0 5.3 42 30-72 12-55 (198)
124 PRK13849 putative crown gall t 74.8 2.7 5.8E-05 36.6 2.8 31 44-74 2-35 (231)
125 TIGR03815 CpaE_hom_Actino heli 74.7 4.2 9E-05 37.2 4.2 34 41-74 91-127 (322)
126 PRK13236 nitrogenase reductase 74.0 2.8 6E-05 37.9 2.8 33 42-74 5-39 (296)
127 COG0541 Ffh Signal recognition 73.9 4.1 8.8E-05 38.7 3.8 35 43-77 100-136 (451)
128 TIGR00682 lpxK tetraacyldisacc 73.7 4.4 9.5E-05 37.0 4.0 34 42-75 27-64 (311)
129 COG0572 Udk Uridine kinase [Nu 73.3 3.4 7.4E-05 35.6 3.0 27 42-68 7-35 (218)
130 PRK00090 bioD dithiobiotin syn 73.0 4.2 9E-05 34.8 3.5 28 46-73 2-32 (222)
131 COG1797 CobB Cobyrinic acid a, 72.8 8 0.00017 36.8 5.5 28 45-72 2-32 (451)
132 KOG0780 Signal recognition par 72.5 6 0.00013 37.1 4.5 33 42-74 100-134 (483)
133 TIGR01969 minD_arch cell divis 72.4 3.2 7E-05 36.0 2.7 30 45-74 2-34 (251)
134 PRK13234 nifH nitrogenase redu 71.4 3.4 7.3E-05 37.4 2.7 34 42-75 3-38 (295)
135 PF13614 AAA_31: AAA domain; P 71.3 5.6 0.00012 31.7 3.8 31 44-74 1-34 (157)
136 cd02034 CooC The accessory pro 70.9 4.4 9.5E-05 31.2 2.9 28 49-76 7-34 (116)
137 COG1192 Soj ATPases involved i 70.9 4.3 9.4E-05 35.6 3.3 30 45-74 7-37 (259)
138 TIGR00379 cobB cobyrinic acid 70.7 4.6 9.9E-05 38.9 3.6 25 49-73 7-32 (449)
139 PF13207 AAA_17: AAA domain; P 70.0 5.1 0.00011 30.4 3.1 21 45-65 1-23 (121)
140 PF01583 APS_kinase: Adenylyls 70.0 7.2 0.00016 31.8 4.1 30 44-73 3-34 (156)
141 COG3640 CooC CO dehydrogenase 69.8 5.6 0.00012 34.7 3.5 29 45-73 2-33 (255)
142 PRK00889 adenylylsulfate kinas 69.7 7.4 0.00016 31.9 4.2 32 42-73 3-36 (175)
143 PF09140 MipZ: ATPase MipZ; I 69.6 3.9 8.5E-05 36.0 2.6 30 45-74 2-34 (261)
144 PRK13231 nitrogenase reductase 69.6 2.1 4.5E-05 37.8 0.9 30 44-74 3-34 (264)
145 COG0489 Mrp ATPases involved i 69.4 6.8 0.00015 34.9 4.1 33 42-74 56-91 (265)
146 PF02606 LpxK: Tetraacyldisacc 69.0 6.5 0.00014 36.2 4.0 34 41-74 33-70 (326)
147 TIGR01425 SRP54_euk signal rec 68.9 7.5 0.00016 37.1 4.5 35 43-77 100-136 (429)
148 TIGR00041 DTMP_kinase thymidyl 68.8 7.2 0.00016 32.4 4.0 31 43-73 3-35 (195)
149 PRK14489 putative bifunctional 67.9 6.6 0.00014 36.7 3.9 35 42-76 204-240 (366)
150 KOG3308 Uncharacterized protei 67.9 4.7 0.0001 34.3 2.6 27 42-68 3-31 (225)
151 COG0237 CoaE Dephospho-CoA kin 67.5 5.4 0.00012 34.0 3.0 27 43-73 2-30 (201)
152 PRK13233 nifH nitrogenase redu 67.3 4.6 0.0001 35.8 2.7 32 44-75 3-37 (275)
153 cd03111 CpaE_like This protein 67.0 5.9 0.00013 29.7 2.9 27 49-75 8-35 (106)
154 PRK11670 antiporter inner memb 66.9 5.1 0.00011 37.5 2.9 33 42-74 106-141 (369)
155 KOG3022 Predicted ATPase, nucl 66.8 4.9 0.00011 35.9 2.6 31 43-73 47-80 (300)
156 PF07755 DUF1611: Protein of u 66.5 7.2 0.00016 35.4 3.7 109 42-151 111-252 (301)
157 PLN02796 D-glycerate 3-kinase 66.3 7.1 0.00015 36.2 3.7 32 42-73 99-132 (347)
158 COG3954 PrkB Phosphoribulokina 66.3 4.2 9.1E-05 34.4 2.0 32 41-72 3-36 (289)
159 PF01558 POR: Pyruvate ferredo 66.0 71 0.0015 26.0 10.0 150 52-252 3-153 (173)
160 cd01672 TMPK Thymidine monopho 65.2 8.9 0.00019 31.6 3.9 31 45-75 2-34 (200)
161 TIGR00313 cobQ cobyric acid sy 64.9 5.6 0.00012 38.6 2.9 27 47-73 2-31 (475)
162 COG3172 NadR Predicted ATPase/ 64.8 6.8 0.00015 32.2 2.8 25 43-67 8-34 (187)
163 PRK11519 tyrosine kinase; Prov 64.6 11 0.00024 38.6 5.1 41 41-81 524-568 (719)
164 PF07015 VirC1: VirC1 protein; 64.2 6.1 0.00013 34.4 2.7 36 50-85 11-47 (231)
165 PRK14491 putative bifunctional 63.1 8.8 0.00019 38.4 4.0 34 42-75 9-44 (597)
166 cd02023 UMPK Uridine monophosp 62.9 7.6 0.00017 32.5 3.1 21 45-65 1-23 (198)
167 TIGR00750 lao LAO/AO transport 62.1 11 0.00024 34.1 4.1 35 41-75 32-68 (300)
168 PRK05480 uridine/cytidine kina 62.1 9.9 0.00022 32.1 3.7 25 41-65 4-30 (209)
169 PTZ00451 dephospho-CoA kinase; 62.0 8.1 0.00018 34.0 3.1 20 44-63 2-23 (244)
170 PF02374 ArsA_ATPase: Anion-tr 61.9 9.7 0.00021 34.6 3.7 33 49-81 9-41 (305)
171 PF00142 Fer4_NifH: 4Fe-4S iro 61.8 7 0.00015 34.8 2.6 27 50-76 9-35 (273)
172 PRK08233 hypothetical protein; 61.2 8.1 0.00018 31.6 2.9 24 43-66 3-28 (182)
173 PRK00771 signal recognition pa 60.7 13 0.00027 35.8 4.4 34 43-76 95-130 (437)
174 PF01121 CoaE: Dephospho-CoA k 60.4 8.3 0.00018 32.2 2.8 24 45-72 2-27 (180)
175 PTZ00301 uridine kinase; Provi 60.2 12 0.00025 32.1 3.7 25 43-67 3-29 (210)
176 PRK10818 cell division inhibit 60.2 8.9 0.00019 33.8 3.1 31 44-74 3-36 (270)
177 PLN03046 D-glycerate 3-kinase; 59.9 12 0.00025 35.9 3.9 35 42-76 211-247 (460)
178 cd02019 NK Nucleoside/nucleoti 59.8 12 0.00027 25.5 3.2 20 46-65 2-23 (69)
179 COG0529 CysC Adenylylsulfate k 59.8 22 0.00048 29.8 5.0 33 41-73 21-55 (197)
180 TIGR00235 udk uridine kinase. 59.6 11 0.00023 32.0 3.4 26 42-67 5-32 (207)
181 PRK01906 tetraacyldisaccharide 59.5 8.1 0.00018 35.7 2.8 34 42-75 55-92 (338)
182 TIGR00347 bioD dethiobiotin sy 58.8 9.6 0.00021 30.9 2.9 25 50-74 7-31 (166)
183 COG1663 LpxK Tetraacyldisaccha 58.7 8.5 0.00018 35.3 2.7 32 43-74 47-82 (336)
184 PF13521 AAA_28: AAA domain; P 58.6 6.9 0.00015 31.6 2.0 19 46-64 2-22 (163)
185 TIGR02880 cbbX_cfxQ probable R 58.5 8.8 0.00019 34.5 2.8 26 45-71 63-88 (284)
186 COG3367 Uncharacterized conser 58.4 13 0.00029 33.9 3.8 164 12-176 108-313 (339)
187 PRK11889 flhF flagellar biosyn 58.0 15 0.00033 34.9 4.3 35 43-77 241-277 (436)
188 cd02024 NRK1 Nicotinamide ribo 57.9 8.1 0.00017 32.5 2.3 21 45-65 1-23 (187)
189 COG4088 Predicted nucleotide k 57.5 14 0.0003 31.9 3.6 30 44-73 2-33 (261)
190 cd02026 PRK Phosphoribulokinas 57.1 7.6 0.00017 34.7 2.2 26 45-70 1-28 (273)
191 PF06418 CTP_synth_N: CTP synt 56.8 13 0.00028 33.1 3.4 30 44-73 2-35 (276)
192 PRK07429 phosphoribulokinase; 55.7 13 0.00028 34.3 3.4 27 42-68 7-35 (327)
193 COG1348 NifH Nitrogenase subun 55.5 9.5 0.00021 33.4 2.3 32 45-76 3-36 (278)
194 KOG3354 Gluconate kinase [Carb 55.1 9.9 0.00021 31.1 2.2 22 45-66 14-37 (191)
195 PRK07933 thymidylate kinase; V 55.0 16 0.00035 31.2 3.8 30 45-74 2-33 (213)
196 PRK00698 tmk thymidylate kinas 54.9 19 0.00041 30.0 4.2 31 43-73 3-35 (205)
197 PRK10867 signal recognition pa 54.5 17 0.00036 34.9 4.1 34 43-76 100-136 (433)
198 TIGR03499 FlhF flagellar biosy 54.5 17 0.00037 32.6 4.0 35 42-76 193-231 (282)
199 COG1428 Deoxynucleoside kinase 54.3 14 0.0003 31.7 3.1 24 43-66 4-29 (216)
200 TIGR00959 ffh signal recogniti 53.8 9.9 0.00021 36.4 2.4 34 43-76 99-135 (428)
201 PF13238 AAA_18: AAA domain; P 53.6 14 0.0003 27.9 2.9 20 46-65 1-22 (129)
202 PRK10463 hydrogenase nickel in 52.7 38 0.00083 30.6 5.9 41 41-81 102-144 (290)
203 PF08433 KTI12: Chromatin asso 52.2 17 0.00036 32.5 3.5 33 44-76 2-36 (270)
204 TIGR01005 eps_transp_fam exopo 51.6 21 0.00045 36.8 4.5 34 42-75 545-581 (754)
205 PRK04040 adenylate kinase; Pro 51.3 18 0.00039 30.3 3.4 28 44-72 3-32 (188)
206 PRK06547 hypothetical protein; 51.2 26 0.00057 28.9 4.3 25 41-65 13-39 (172)
207 COG0125 Tmk Thymidylate kinase 50.7 14 0.00031 31.6 2.7 33 43-75 3-37 (208)
208 PF01268 FTHFS: Formate--tetra 50.3 18 0.00039 35.5 3.6 33 41-73 52-90 (557)
209 PRK12726 flagellar biosynthesi 50.3 24 0.00052 33.3 4.3 35 42-76 205-241 (407)
210 PRK13886 conjugal transfer pro 50.2 15 0.00034 32.2 2.9 27 49-75 11-37 (241)
211 cd02022 DPCK Dephospho-coenzym 50.1 16 0.00034 30.2 2.9 25 45-73 1-27 (179)
212 COG0455 flhG Antiactivator of 50.0 28 0.0006 31.0 4.5 29 44-72 3-35 (262)
213 cd00477 FTHFS Formyltetrahydro 49.9 22 0.00048 34.6 4.0 32 42-73 37-74 (524)
214 PLN02924 thymidylate kinase 49.8 27 0.00058 30.1 4.3 32 42-73 15-48 (220)
215 cd00550 ArsA_ATPase Oxyanion-t 49.2 16 0.00034 32.2 2.8 29 50-78 9-37 (254)
216 COG3265 GntK Gluconate kinase 49.2 10 0.00022 30.8 1.4 21 47-68 2-22 (161)
217 PRK13768 GTPase; Provisional 49.1 15 0.00033 32.3 2.8 30 45-74 4-35 (253)
218 PF01935 DUF87: Domain of unkn 48.8 16 0.00034 31.3 2.8 30 44-74 27-57 (229)
219 COG0504 PyrG CTP synthase (UTP 48.7 21 0.00046 34.5 3.7 30 44-73 2-35 (533)
220 COG0003 ArsA Predicted ATPase 48.4 16 0.00034 33.6 2.8 97 45-144 4-113 (322)
221 PF00580 UvrD-helicase: UvrD/R 48.3 20 0.00044 31.8 3.5 30 41-71 14-44 (315)
222 TIGR00152 dephospho-CoA kinase 47.9 15 0.00032 30.5 2.4 21 45-65 1-23 (188)
223 cd03113 CTGs CTP synthetase (C 47.9 25 0.00053 31.0 3.7 29 45-73 2-34 (255)
224 PRK13896 cobyrinic acid a,c-di 47.9 22 0.00048 34.1 3.8 29 45-73 3-34 (433)
225 cd02027 APSK Adenosine 5'-phos 47.7 23 0.0005 28.3 3.4 27 46-72 2-30 (149)
226 PRK14734 coaE dephospho-CoA ki 47.7 19 0.00042 30.4 3.1 25 44-72 2-28 (200)
227 cd03243 ABC_MutS_homologs The 47.4 27 0.00059 29.4 3.9 21 44-64 30-52 (202)
228 PLN02348 phosphoribulokinase 47.3 24 0.00053 33.3 3.9 28 41-68 47-76 (395)
229 cd01130 VirB11-like_ATPase Typ 47.0 23 0.00049 29.4 3.4 32 35-67 18-51 (186)
230 PF08303 tRNA_lig_kinase: tRNA 46.9 11 0.00025 31.0 1.4 24 46-70 5-28 (168)
231 PRK06995 flhF flagellar biosyn 46.7 26 0.00057 34.1 4.1 33 43-75 256-292 (484)
232 PRK05632 phosphate acetyltrans 46.3 22 0.00049 36.2 3.8 30 45-74 4-36 (684)
233 PRK08534 pyruvate ferredoxin o 45.9 1.7E+02 0.0037 24.1 11.5 94 45-164 3-98 (181)
234 PLN02974 adenosylmethionine-8- 45.6 25 0.00054 36.6 4.0 33 41-73 25-60 (817)
235 PRK13505 formate--tetrahydrofo 45.5 29 0.00063 34.2 4.2 32 42-73 54-91 (557)
236 cd03115 SRP The signal recogni 45.2 18 0.00039 29.4 2.5 32 45-76 2-35 (173)
237 PRK06761 hypothetical protein; 44.7 19 0.00041 32.4 2.6 30 44-73 4-35 (282)
238 PRK05541 adenylylsulfate kinas 44.5 37 0.0008 27.7 4.3 31 42-72 6-38 (176)
239 PRK14731 coaE dephospho-CoA ki 44.3 25 0.00054 29.9 3.3 26 43-72 5-32 (208)
240 PRK00300 gmk guanylate kinase; 44.1 23 0.0005 29.6 3.0 25 42-66 4-30 (205)
241 cd02035 ArsA ArsA ATPase funct 44.1 20 0.00043 30.6 2.6 28 49-76 7-34 (217)
242 PRK13506 formate--tetrahydrofo 43.4 30 0.00066 34.1 4.0 31 42-72 53-89 (578)
243 cd02038 FleN-like FleN is a me 43.3 25 0.00055 27.6 3.0 51 45-109 4-55 (139)
244 PRK13695 putative NTPase; Prov 43.3 33 0.00072 28.0 3.8 28 45-72 2-31 (174)
245 PLN02422 dephospho-CoA kinase 43.2 25 0.00054 30.7 3.1 25 44-72 2-28 (232)
246 KOG3062 RNA polymerase II elon 43.2 32 0.00069 30.0 3.6 29 43-71 1-31 (281)
247 PRK00081 coaE dephospho-CoA ki 43.0 25 0.00054 29.5 3.0 25 44-72 3-29 (194)
248 PRK13507 formate--tetrahydrofo 42.9 25 0.00054 34.6 3.3 32 42-73 62-99 (587)
249 PRK14732 coaE dephospho-CoA ki 42.8 20 0.00043 30.3 2.4 19 45-63 1-21 (196)
250 PRK03333 coaE dephospho-CoA ki 42.2 24 0.00052 33.4 3.1 20 44-63 2-23 (395)
251 PF13604 AAA_30: AAA domain; P 42.2 37 0.0008 28.5 4.0 34 43-76 18-53 (196)
252 COG4133 CcmA ABC-type transpor 41.9 18 0.00038 30.7 1.9 29 41-69 26-56 (209)
253 PRK08118 topology modulation p 41.7 31 0.00067 28.2 3.3 23 44-66 2-26 (167)
254 PF02223 Thymidylate_kin: Thym 41.7 18 0.00038 29.9 1.9 21 52-72 7-27 (186)
255 PLN02759 Formate--tetrahydrofo 41.7 32 0.00068 34.2 3.8 32 42-73 68-106 (637)
256 PRK05380 pyrG CTP synthetase; 41.6 33 0.00071 33.7 3.9 31 43-73 2-36 (533)
257 cd03114 ArgK-like The function 41.2 24 0.00053 28.2 2.6 29 46-74 2-32 (148)
258 PF00005 ABC_tran: ABC transpo 41.1 27 0.00058 26.9 2.8 26 42-67 10-37 (137)
259 PRK14733 coaE dephospho-CoA ki 40.9 28 0.00061 29.7 3.0 28 42-72 5-34 (204)
260 PF00186 DHFR_1: Dihydrofolate 40.6 13 0.00028 30.5 0.8 51 247-301 48-99 (161)
261 PF07931 CPT: Chloramphenicol 40.4 17 0.00037 30.2 1.6 24 44-67 2-27 (174)
262 PRK06217 hypothetical protein; 40.2 30 0.00064 28.6 3.0 21 45-65 3-25 (183)
263 PRK14730 coaE dephospho-CoA ki 40.2 31 0.00068 29.0 3.2 26 44-72 2-29 (195)
264 PRK14490 putative bifunctional 40.1 34 0.00074 31.9 3.7 32 42-74 4-37 (369)
265 PRK13973 thymidylate kinase; P 40.1 24 0.00052 30.1 2.5 32 44-75 4-37 (213)
266 PRK07261 topology modulation p 39.9 32 0.00069 28.2 3.1 21 45-65 2-24 (171)
267 TIGR02322 phosphon_PhnN phosph 39.8 29 0.00064 28.3 3.0 24 44-67 2-27 (179)
268 cd03281 ABC_MSH5_euk MutS5 hom 39.5 40 0.00087 28.8 3.8 29 44-72 30-62 (213)
269 COG4555 NatA ABC-type Na+ tran 39.4 30 0.00065 29.8 2.9 28 41-68 26-55 (245)
270 TIGR01360 aden_kin_iso1 adenyl 39.1 37 0.0008 27.7 3.5 28 42-72 2-31 (188)
271 COG2019 AdkA Archaeal adenylat 39.0 34 0.00075 28.4 3.1 23 43-65 4-28 (189)
272 PF12147 Methyltransf_20: Puta 38.9 53 0.0012 29.8 4.5 71 99-173 187-261 (311)
273 PF13555 AAA_29: P-loop contai 38.7 48 0.001 22.4 3.3 26 44-69 24-51 (62)
274 PRK13889 conjugal transfer rel 38.6 28 0.00061 37.0 3.1 29 45-73 364-394 (988)
275 PRK06278 cobyrinic acid a,c-di 38.4 37 0.00081 33.0 3.8 28 41-68 236-266 (476)
276 PF02562 PhoH: PhoH-like prote 38.3 34 0.00074 29.2 3.1 35 268-302 121-155 (205)
277 PRK06762 hypothetical protein; 38.3 38 0.00082 27.2 3.3 22 44-65 3-26 (166)
278 TIGR00337 PyrG CTP synthase. C 37.9 40 0.00086 33.1 3.8 30 44-73 2-35 (525)
279 cd03283 ABC_MutS-like MutS-lik 37.8 43 0.00093 28.2 3.7 28 44-71 26-57 (199)
280 PF10623 PilI: Plasmid conjuga 37.7 1.5E+02 0.0032 21.1 5.6 46 255-301 5-51 (83)
281 TIGR01613 primase_Cterm phage/ 37.3 23 0.0005 32.0 2.1 21 49-69 84-104 (304)
282 PLN02327 CTP synthase 36.7 42 0.00092 33.1 3.8 30 44-73 2-35 (557)
283 PF02492 cobW: CobW/HypB/UreG, 36.2 73 0.0016 26.1 4.8 35 44-79 1-38 (178)
284 COG4586 ABC-type uncharacteriz 36.2 27 0.00058 31.4 2.2 36 42-77 49-86 (325)
285 PF13476 AAA_23: AAA domain; P 36.1 40 0.00087 27.6 3.3 26 43-68 19-46 (202)
286 PRK05703 flhF flagellar biosyn 36.0 48 0.001 31.7 4.1 35 43-77 221-259 (424)
287 COG1832 Predicted CoA-binding 35.9 40 0.00087 26.8 2.9 39 34-73 8-47 (140)
288 PRK00131 aroK shikimate kinase 35.8 47 0.001 26.6 3.6 25 42-66 3-29 (175)
289 cd03280 ABC_MutS2 MutS2 homolo 35.6 54 0.0012 27.5 4.0 27 44-70 29-59 (200)
290 PRK04296 thymidine kinase; Pro 35.6 45 0.00098 27.8 3.5 32 44-75 3-36 (190)
291 PF12846 AAA_10: AAA-like doma 35.6 32 0.00068 30.3 2.7 28 45-73 6-33 (304)
292 PF05872 DUF853: Bacterial pro 35.5 24 0.00053 33.9 1.9 29 44-73 23-51 (502)
293 cd01131 PilT Pilus retraction 35.5 43 0.00094 28.1 3.4 22 45-66 3-26 (198)
294 cd03223 ABCD_peroxisomal_ALDP 35.1 42 0.00092 27.2 3.1 26 41-66 25-52 (166)
295 cd03255 ABC_MJ0796_Lo1CDE_FtsE 34.9 29 0.00063 29.4 2.2 25 42-66 29-55 (218)
296 PRK08537 2-oxoglutarate ferred 34.4 2.6E+02 0.0056 22.8 10.9 33 218-252 125-158 (177)
297 cd03229 ABC_Class3 This class 34.4 29 0.00062 28.5 2.0 26 42-67 25-52 (178)
298 cd04236 AAK_NAGS-Urea AAK_NAGS 34.1 76 0.0016 28.4 4.8 65 233-302 7-77 (271)
299 PRK14709 hypothetical protein; 34.0 32 0.00069 33.4 2.5 20 49-68 213-232 (469)
300 smart00053 DYNc Dynamin, GTPas 33.9 35 0.00076 29.9 2.6 23 42-64 25-49 (240)
301 cd02020 CMPK Cytidine monophos 33.7 39 0.00085 26.2 2.7 21 45-65 1-23 (147)
302 PRK13826 Dtr system oriT relax 33.3 38 0.00081 36.5 3.1 31 43-73 397-429 (1102)
303 TIGR01313 therm_gnt_kin carboh 33.0 32 0.00069 27.6 2.1 19 47-65 2-22 (163)
304 PF12128 DUF3584: Protein of u 32.8 57 0.0012 35.7 4.4 25 45-72 19-45 (1201)
305 COG1131 CcmA ABC-type multidru 32.7 30 0.00064 31.2 2.0 27 42-68 30-58 (293)
306 KOG0781 Signal recognition par 32.6 43 0.00093 32.5 3.0 45 28-74 365-411 (587)
307 COG3910 Predicted ATPase [Gene 32.5 37 0.00081 28.9 2.4 43 24-72 21-65 (233)
308 cd03294 ABC_Pro_Gly_Bertaine T 32.3 31 0.00066 30.5 2.0 27 41-67 48-76 (269)
309 PLN02318 phosphoribulokinase/u 31.9 49 0.0011 33.2 3.4 26 41-66 63-90 (656)
310 PRK13947 shikimate kinase; Pro 31.8 54 0.0012 26.4 3.3 22 45-66 3-26 (171)
311 TIGR01033 DNA-binding regulato 31.7 1.5E+02 0.0033 25.9 6.2 59 227-289 50-115 (238)
312 KOG0635 Adenosine 5'-phosphosu 31.4 81 0.0018 25.8 4.0 33 41-73 29-63 (207)
313 PRK14723 flhF flagellar biosyn 31.4 61 0.0013 33.5 4.1 34 43-76 185-222 (767)
314 cd03226 ABC_cobalt_CbiO_domain 31.2 50 0.0011 27.7 3.0 26 41-66 24-51 (205)
315 cd03259 ABC_Carb_Solutes_like 30.8 36 0.00079 28.7 2.1 26 41-66 24-51 (213)
316 COG1341 Predicted GTPase or GT 30.5 44 0.00096 31.5 2.7 33 42-74 72-106 (398)
317 PRK13540 cytochrome c biogenes 30.3 40 0.00087 28.2 2.3 26 41-66 25-52 (200)
318 PTZ00386 formyl tetrahydrofola 30.2 48 0.001 32.9 3.0 32 42-73 67-105 (625)
319 PRK13537 nodulation ABC transp 29.9 33 0.00073 31.1 1.9 26 42-67 32-59 (306)
320 cd02021 GntK Gluconate kinase 29.9 42 0.00092 26.4 2.3 20 46-65 2-23 (150)
321 PRK14528 adenylate kinase; Pro 29.8 78 0.0017 26.2 4.0 26 44-72 2-29 (186)
322 PRK10744 pstB phosphate transp 29.7 45 0.00098 29.2 2.6 26 41-66 37-64 (260)
323 PRK09825 idnK D-gluconate kina 29.6 62 0.0013 26.7 3.3 24 44-67 4-29 (176)
324 cd01129 PulE-GspE PulE/GspE Th 29.4 78 0.0017 28.1 4.1 20 42-61 79-100 (264)
325 TIGR01166 cbiO cobalt transpor 29.2 39 0.00084 27.9 2.0 25 42-66 17-43 (190)
326 KOG3220 Similar to bacterial d 29.0 56 0.0012 28.0 2.8 25 44-72 2-28 (225)
327 cd03278 ABC_SMC_barmotin Barmo 28.8 57 0.0012 27.4 3.0 23 45-67 24-48 (197)
328 PRK10536 hypothetical protein; 28.8 1.1E+02 0.0023 27.3 4.7 36 267-302 177-212 (262)
329 TIGR02782 TrbB_P P-type conjug 28.6 1E+02 0.0022 27.9 4.7 34 33-67 123-158 (299)
330 COG2759 MIS1 Formyltetrahydrof 28.5 39 0.00084 32.5 2.0 31 42-72 51-87 (554)
331 PRK15177 Vi polysaccharide exp 28.4 41 0.00088 28.6 2.0 25 42-66 12-38 (213)
332 cd03274 ABC_SMC4_euk Eukaryoti 28.2 64 0.0014 27.5 3.2 21 44-64 26-48 (212)
333 cd03273 ABC_SMC2_euk Eukaryoti 28.2 68 0.0015 27.9 3.5 26 42-67 24-51 (251)
334 PRK13975 thymidylate kinase; P 28.2 65 0.0014 26.6 3.2 24 44-67 3-28 (196)
335 PRK14722 flhF flagellar biosyn 28.0 74 0.0016 29.9 3.8 34 42-75 136-173 (374)
336 cd03222 ABC_RNaseL_inhibitor T 27.9 47 0.001 27.5 2.3 27 41-67 23-51 (177)
337 COG1245 Predicted ATPase, RNas 27.9 58 0.0013 31.6 3.1 26 41-66 98-125 (591)
338 TIGR00150 HI0065_YjeE ATPase, 27.9 1E+02 0.0023 24.3 4.1 31 35-66 15-47 (133)
339 cd03263 ABC_subfamily_A The AB 27.7 44 0.00096 28.3 2.2 26 41-66 26-53 (220)
340 PRK08099 bifunctional DNA-bind 27.6 62 0.0013 30.7 3.3 24 42-65 218-243 (399)
341 PRK11248 tauB taurine transpor 27.5 44 0.00096 29.3 2.2 25 42-66 26-52 (255)
342 cd03232 ABC_PDR_domain2 The pl 27.4 62 0.0013 26.9 2.9 23 42-64 32-56 (192)
343 COG2812 DnaX DNA polymerase II 27.2 1.2E+02 0.0025 29.9 5.1 53 241-301 100-156 (515)
344 cd03231 ABC_CcmA_heme_exporter 26.9 45 0.00097 27.9 2.0 26 41-66 24-51 (201)
345 PRK14235 phosphate transporter 26.9 62 0.0013 28.5 3.0 26 41-66 43-70 (267)
346 PRK12724 flagellar biosynthesi 26.7 88 0.0019 30.0 4.1 34 43-76 223-259 (432)
347 cd03293 ABC_NrtD_SsuB_transpor 26.7 41 0.00089 28.5 1.8 25 42-66 29-55 (220)
348 PRK00023 cmk cytidylate kinase 26.7 72 0.0016 27.5 3.3 23 44-66 5-29 (225)
349 PRK06851 hypothetical protein; 26.6 82 0.0018 29.5 3.8 31 42-72 29-61 (367)
350 cd00227 CPT Chloramphenicol (C 26.6 81 0.0018 25.7 3.5 23 44-66 3-27 (175)
351 PRK10247 putative ABC transpor 26.6 59 0.0013 27.8 2.7 26 41-66 31-58 (225)
352 PRK10908 cell division protein 26.5 69 0.0015 27.2 3.2 26 41-66 26-53 (222)
353 cd03256 ABC_PhnC_transporter A 26.5 51 0.0011 28.3 2.3 25 42-66 26-52 (241)
354 cd01120 RecA-like_NTPases RecA 26.5 69 0.0015 24.9 3.0 31 46-76 2-34 (165)
355 cd03221 ABCF_EF-3 ABCF_EF-3 E 26.4 69 0.0015 25.3 2.9 26 41-66 24-51 (144)
356 TIGR03608 L_ocin_972_ABC putat 26.3 48 0.001 27.7 2.1 25 42-66 23-49 (206)
357 PRK13477 bifunctional pantoate 26.2 78 0.0017 31.1 3.7 25 42-66 283-309 (512)
358 PRK09493 glnQ glutamine ABC tr 26.0 47 0.001 28.6 2.0 25 42-66 26-52 (240)
359 TIGR02768 TraA_Ti Ti-type conj 26.0 60 0.0013 33.5 3.1 30 45-75 373-402 (744)
360 TIGR02673 FtsE cell division A 25.8 49 0.0011 27.8 2.1 26 41-66 26-53 (214)
361 PRK10584 putative ABC transpor 25.6 52 0.0011 28.0 2.2 26 41-66 34-61 (228)
362 KOG0330 ATP-dependent RNA heli 25.5 1.9E+02 0.0041 27.5 5.8 120 15-136 69-197 (476)
363 PRK07078 hypothetical protein; 25.5 48 0.0011 34.2 2.3 21 49-69 499-519 (759)
364 PRK13652 cbiO cobalt transport 25.4 48 0.001 29.4 2.0 26 42-67 29-56 (277)
365 PRK13650 cbiO cobalt transport 25.4 51 0.0011 29.3 2.2 27 41-67 31-59 (279)
366 cd03260 ABC_PstB_phosphate_tra 25.2 77 0.0017 26.9 3.2 25 41-65 24-50 (227)
367 COG1474 CDC6 Cdc6-related prot 25.2 53 0.0012 30.7 2.3 23 46-68 45-69 (366)
368 TIGR03574 selen_PSTK L-seryl-t 25.2 67 0.0014 27.9 2.9 29 46-74 2-32 (249)
369 PF03266 NTPase_1: NTPase; In 25.1 85 0.0018 25.7 3.3 27 46-72 2-30 (168)
370 KOG0460 Mitochondrial translat 25.1 52 0.0011 30.6 2.1 21 52-72 65-85 (449)
371 PF03029 ATP_bind_1: Conserved 25.0 52 0.0011 28.7 2.1 23 52-74 7-29 (238)
372 TIGR02770 nickel_nikD nickel i 25.0 50 0.0011 28.3 2.0 25 42-66 11-37 (230)
373 cd03240 ABC_Rad50 The catalyti 24.9 79 0.0017 26.7 3.2 24 44-67 23-48 (204)
374 TIGR03263 guanyl_kin guanylate 24.6 66 0.0014 26.1 2.6 22 44-65 2-25 (180)
375 cd03269 ABC_putative_ATPase Th 24.5 80 0.0017 26.5 3.1 26 41-66 24-51 (210)
376 cd03225 ABC_cobalt_CbiO_domain 24.5 60 0.0013 27.2 2.4 25 42-66 26-52 (211)
377 cd03265 ABC_DrrA DrrA is the A 24.4 80 0.0017 26.7 3.2 25 42-66 25-51 (220)
378 TIGR02315 ABC_phnC phosphonate 24.2 58 0.0013 28.0 2.3 26 41-66 26-53 (243)
379 PRK13538 cytochrome c biogenes 24.2 55 0.0012 27.4 2.1 26 41-66 25-52 (204)
380 TIGR02173 cyt_kin_arch cytidyl 24.1 77 0.0017 25.3 2.9 21 45-65 2-24 (171)
381 cd03253 ABCC_ATM1_transporter 24.1 66 0.0014 27.5 2.6 25 42-66 26-52 (236)
382 cd03238 ABC_UvrA The excision 24.0 82 0.0018 26.0 3.0 21 41-61 19-41 (176)
383 TIGR00960 3a0501s02 Type II (G 24.0 54 0.0012 27.7 2.0 25 42-66 28-54 (216)
384 cd03272 ABC_SMC3_euk Eukaryoti 23.9 77 0.0017 27.2 3.0 25 43-67 23-49 (243)
385 TIGR02640 gas_vesic_GvpN gas v 23.7 56 0.0012 28.8 2.1 21 44-65 25-45 (262)
386 PRK14251 phosphate ABC transpo 23.7 67 0.0014 27.9 2.6 25 42-66 29-55 (251)
387 cd03300 ABC_PotA_N PotA is an 23.6 59 0.0013 27.9 2.2 26 42-67 25-52 (232)
388 PRK08154 anaerobic benzoate ca 23.6 59 0.0013 29.5 2.3 25 41-65 131-157 (309)
389 PRK11153 metN DL-methionine tr 23.5 49 0.0011 30.5 1.8 27 41-67 29-57 (343)
390 cd03266 ABC_NatA_sodium_export 23.5 64 0.0014 27.2 2.4 25 42-66 30-56 (218)
391 PRK13946 shikimate kinase; Pro 23.4 89 0.0019 25.8 3.2 22 44-65 11-34 (184)
392 PRK06731 flhF flagellar biosyn 23.4 1.2E+02 0.0026 27.1 4.1 36 42-77 74-111 (270)
393 PRK09518 bifunctional cytidyla 23.4 80 0.0017 32.4 3.4 23 44-66 2-26 (712)
394 TIGR00017 cmk cytidylate kinas 23.3 89 0.0019 26.8 3.2 23 44-66 3-27 (217)
395 cd03237 ABC_RNaseL_inhibitor_d 23.3 85 0.0018 27.4 3.2 25 42-66 24-50 (246)
396 TIGR03710 OAFO_sf 2-oxoacid:ac 23.2 7.4E+02 0.016 24.6 10.0 90 45-164 3-94 (562)
397 KOG2749 mRNA cleavage and poly 23.2 1.2E+02 0.0026 28.4 4.1 31 42-72 102-134 (415)
398 cd03369 ABCC_NFT1 Domain 2 of 23.2 77 0.0017 26.5 2.8 26 41-66 32-59 (207)
399 cd00267 ABC_ATPase ABC (ATP-bi 23.2 62 0.0013 25.7 2.1 25 42-66 24-50 (157)
400 TIGR01184 ntrCD nitrate transp 23.1 59 0.0013 27.9 2.1 25 42-66 10-36 (230)
401 cd03262 ABC_HisP_GlnQ_permease 23.1 63 0.0014 27.1 2.3 25 42-66 25-51 (213)
402 TIGR03864 PQQ_ABC_ATP ABC tran 23.0 87 0.0019 26.9 3.2 26 41-66 25-52 (236)
403 cd03216 ABC_Carb_Monos_I This 23.0 89 0.0019 25.2 3.0 27 41-67 24-52 (163)
404 cd03258 ABC_MetN_methionine_tr 22.9 66 0.0014 27.5 2.4 27 41-67 29-57 (233)
405 cd03295 ABC_OpuCA_Osmoprotecti 22.9 65 0.0014 27.8 2.3 26 41-66 25-52 (242)
406 TIGR01420 pilT_fam pilus retra 22.8 1.1E+02 0.0023 28.3 3.8 25 42-66 121-147 (343)
407 cd03250 ABCC_MRP_domain1 Domai 22.7 92 0.002 26.0 3.2 26 41-66 29-56 (204)
408 PRK14238 phosphate transporter 22.7 81 0.0018 27.9 2.9 26 41-66 48-75 (271)
409 PRK14274 phosphate ABC transpo 22.5 94 0.002 27.1 3.3 25 42-66 37-63 (259)
410 cd03267 ABC_NatA_like Similar 22.5 87 0.0019 26.9 3.1 25 42-66 46-72 (236)
411 cd03218 ABC_YhbG The ABC trans 22.5 63 0.0014 27.5 2.2 25 42-66 25-51 (232)
412 PRK11264 putative amino-acid A 22.4 63 0.0014 28.0 2.2 26 41-66 27-54 (250)
413 cd03252 ABCC_Hemolysin The ABC 22.4 73 0.0016 27.3 2.5 26 42-67 27-54 (237)
414 PRK14250 phosphate ABC transpo 22.3 62 0.0014 27.9 2.1 25 42-66 28-54 (241)
415 cd03279 ABC_sbcCD SbcCD and ot 22.3 49 0.0011 28.1 1.4 23 43-65 28-52 (213)
416 cd03247 ABCC_cytochrome_bd The 22.3 96 0.0021 25.3 3.1 25 42-66 27-53 (178)
417 PF06048 DUF927: Domain of unk 22.3 1.4E+02 0.0029 26.8 4.3 27 41-67 191-219 (286)
418 KOG0447 Dynamin-like GTP bindi 22.3 41 0.00089 33.2 1.0 24 41-64 306-331 (980)
419 PRK11629 lolD lipoprotein tran 22.2 59 0.0013 27.9 1.9 25 42-66 34-60 (233)
420 TIGR03771 anch_rpt_ABC anchore 22.2 67 0.0015 27.4 2.3 25 42-66 5-31 (223)
421 PRK14530 adenylate kinase; Pro 22.1 98 0.0021 26.2 3.3 22 44-65 4-27 (215)
422 TIGR02533 type_II_gspE general 22.1 97 0.0021 30.2 3.5 19 42-60 241-261 (486)
423 TIGR02881 spore_V_K stage V sp 22.1 70 0.0015 28.1 2.4 27 43-69 42-70 (261)
424 PRK08533 flagellar accessory p 22.1 1.6E+02 0.0035 25.4 4.6 35 42-77 23-60 (230)
425 TIGR02364 dha_pts dihydroxyace 22.1 2.6E+02 0.0057 21.7 5.4 43 239-292 42-84 (125)
426 cd03214 ABC_Iron-Siderophores_ 22.1 69 0.0015 26.2 2.2 27 41-67 23-51 (180)
427 cd03213 ABCG_EPDR ABCG transpo 22.0 92 0.002 25.9 3.0 25 41-65 33-59 (194)
428 PRK12378 hypothetical protein; 22.0 3.9E+02 0.0085 23.3 6.9 58 227-288 48-111 (235)
429 cd03282 ABC_MSH4_euk MutS4 hom 22.0 1.2E+02 0.0025 25.8 3.6 30 42-71 28-61 (204)
430 PRK13976 thymidylate kinase; P 21.9 86 0.0019 26.7 2.8 28 46-73 3-34 (209)
431 PF01202 SKI: Shikimate kinase 21.9 65 0.0014 25.8 2.0 20 52-71 3-22 (158)
432 PRK13539 cytochrome c biogenes 21.9 67 0.0015 27.0 2.2 26 41-66 26-53 (207)
433 cd03228 ABCC_MRP_Like The MRP 21.8 78 0.0017 25.6 2.5 27 41-67 26-54 (171)
434 cd03301 ABC_MalK_N The N-termi 21.8 64 0.0014 27.1 2.0 26 41-66 24-51 (213)
435 TIGR01288 nodI ATP-binding ABC 21.7 60 0.0013 29.2 1.9 26 41-66 28-55 (303)
436 PRK00110 hypothetical protein; 21.7 3.1E+02 0.0066 24.2 6.2 58 227-288 50-114 (245)
437 cd03292 ABC_FtsE_transporter F 21.6 96 0.0021 26.0 3.1 25 42-66 26-52 (214)
438 cd03244 ABCC_MRP_domain2 Domai 21.6 79 0.0017 26.7 2.6 25 42-66 29-55 (221)
439 cd03219 ABC_Mj1267_LivG_branch 21.6 61 0.0013 27.7 1.9 25 42-66 25-51 (236)
440 PRK04182 cytidylate kinase; Pr 21.6 91 0.002 25.1 2.9 21 45-65 2-24 (180)
441 PF01709 Transcrip_reg: Transc 21.4 1.9E+02 0.0042 25.2 4.9 59 227-289 46-111 (234)
442 COG1102 Cmk Cytidylate kinase 21.4 1E+02 0.0022 25.6 2.9 29 45-76 2-32 (179)
443 PHA02575 1 deoxynucleoside mon 21.4 92 0.002 27.1 2.9 24 45-72 2-27 (227)
444 TIGR02769 nickel_nikE nickel i 21.4 65 0.0014 28.3 2.0 26 41-66 35-62 (265)
445 TIGR02211 LolD_lipo_ex lipopro 21.3 69 0.0015 27.1 2.1 25 42-66 30-56 (221)
446 COG3896 Chloramphenicol 3-O-ph 21.3 71 0.0015 26.4 2.0 29 42-70 22-52 (205)
447 PRK03731 aroL shikimate kinase 21.2 1.1E+02 0.0023 24.6 3.2 22 45-66 4-27 (171)
448 cd03261 ABC_Org_Solvent_Resist 21.2 63 0.0014 27.7 1.9 26 41-66 24-51 (235)
449 cd03235 ABC_Metallic_Cations A 21.1 92 0.002 26.2 2.9 26 41-66 23-50 (213)
450 PRK11124 artP arginine transpo 21.1 1E+02 0.0022 26.6 3.1 25 42-66 27-53 (242)
451 PF13380 CoA_binding_2: CoA bi 21.0 1.9E+02 0.0042 21.9 4.4 30 44-73 1-31 (116)
452 PRK13541 cytochrome c biogenes 21.0 76 0.0016 26.3 2.3 25 42-66 25-51 (195)
453 PRK14484 phosphotransferase ma 21.0 3.9E+02 0.0085 20.8 6.1 47 239-298 42-88 (124)
454 PRK14242 phosphate transporter 20.9 92 0.002 27.0 2.9 26 41-66 30-57 (253)
455 PRK11022 dppD dipeptide transp 20.9 66 0.0014 29.5 2.0 26 41-66 31-58 (326)
456 PRK14248 phosphate ABC transpo 20.8 93 0.002 27.3 2.9 26 41-66 45-72 (268)
457 COG4167 SapF ABC-type antimicr 20.8 85 0.0018 26.7 2.4 28 42-69 38-67 (267)
458 cd03297 ABC_ModC_molybdenum_tr 20.8 67 0.0015 27.1 1.9 25 41-66 22-48 (214)
459 PRK02496 adk adenylate kinase; 20.8 1.2E+02 0.0025 24.9 3.4 22 45-66 3-26 (184)
460 PF00004 AAA: ATPase family as 20.7 93 0.002 23.3 2.6 20 47-66 2-23 (132)
461 TIGR01188 drrA daunorubicin re 20.7 64 0.0014 29.0 1.9 26 42-67 18-45 (302)
462 TIGR00972 3a0107s01c2 phosphat 20.7 1E+02 0.0022 26.6 3.2 26 41-66 25-52 (247)
463 TIGR00101 ureG urease accessor 20.6 1.3E+02 0.0027 25.4 3.6 24 44-67 2-27 (199)
464 COG0283 Cmk Cytidylate kinase 20.6 1.1E+02 0.0023 26.5 3.1 29 44-72 5-35 (222)
465 COG5271 MDN1 AAA ATPase contai 20.6 1.1E+02 0.0025 35.2 3.8 52 29-82 454-522 (4600)
466 PRK14721 flhF flagellar biosyn 20.6 1.2E+02 0.0026 29.1 3.7 24 42-65 190-215 (420)
467 COG1066 Sms Predicted ATP-depe 20.6 1.9E+02 0.004 27.8 4.8 129 26-158 73-211 (456)
468 KOG0057 Mitochondrial Fe/S clu 20.5 1.2E+02 0.0025 30.1 3.6 29 42-70 377-407 (591)
469 COG4152 ABC-type uncharacteriz 20.3 62 0.0013 28.8 1.6 31 42-72 27-60 (300)
470 PRK06835 DNA replication prote 20.2 84 0.0018 28.9 2.6 31 44-74 184-216 (329)
471 cd01124 KaiC KaiC is a circadi 20.2 1.4E+02 0.0029 24.2 3.7 32 46-77 2-35 (187)
472 PRK12338 hypothetical protein; 20.2 1.1E+02 0.0023 28.2 3.1 25 42-66 3-29 (319)
473 PRK10078 ribose 1,5-bisphospho 20.2 81 0.0017 26.0 2.3 21 45-65 4-26 (186)
474 PRK13949 shikimate kinase; Pro 20.1 1.1E+02 0.0025 24.9 3.1 22 45-66 3-26 (169)
475 PRK14262 phosphate ABC transpo 20.0 82 0.0018 27.3 2.4 25 42-66 28-54 (250)
476 PRK11701 phnK phosphonate C-P 20.0 75 0.0016 27.7 2.1 27 41-67 30-58 (258)
No 1
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=2.1e-53 Score=404.51 Aligned_cols=280 Identities=24% Similarity=0.450 Sum_probs=236.5
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|+||+|+++||++.+|++++++++++.+.+++.. +.++|+||||||||||++|++++|+.+|.++.++||+|.|..
T Consensus 65 ~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~~ 142 (433)
T TIGR01087 65 LVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPAL 142 (433)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHHH
Confidence 578999999999999999999999999999998877 678999999999999999999999999999999999998854
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
.... ..+.|++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++..++++.+|+|.
T Consensus 143 ~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~ 213 (433)
T TIGR01087 143 EVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNA 213 (433)
T ss_pred HHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 3221 135689999999998885543 7999999999999999999999999999999999888889999999
Q ss_pred CChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 021862 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243 (306)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~ 243 (306)
||+.+..+.+..+.++++||...+.. ..+.....+..+....++++++|+||++|+++|+ ++|..+|++++
T Consensus 214 dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~~ 284 (433)
T TIGR01087 214 DDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNLE 284 (433)
T ss_pred CCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCHH
Confidence 99988777766666788888543211 0111111111111112478999999999999999 89999999999
Q ss_pred HHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
.|+++|++|++++||||++. ..+++.+|+|+++|||+|+..+++.++ +++++|+||+.+.
T Consensus 285 ~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~ 344 (433)
T TIGR01087 285 AILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKG 344 (433)
T ss_pred HHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCC
Confidence 99999999999999999996 457899999988999999999999996 4799999998764
No 2
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.9e-53 Score=396.21 Aligned_cols=282 Identities=27% Similarity=0.450 Sum_probs=242.5
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|.||+||++||.+++|+..+.+++.+++.+++.. ...|+|+|||||||||||+|+++||+..|+++.++||+|.|.+
T Consensus 72 ~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l 150 (448)
T COG0771 72 LVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPAL 150 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHH
Confidence 467899999999999999999999999999999876 4667999999999999999999999999999999999999998
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
.... ...+.|+.|+|+|+.|++.... ++|++++||||++||+|||+|+|+|..+|.+++....+ ++|+|.
T Consensus 151 ~~~~-------~~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~ 220 (448)
T COG0771 151 ELLE-------QAEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINA 220 (448)
T ss_pred Hhhc-------ccCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeC
Confidence 6653 2456789999999999998875 89999999999999999999999999999999997544 999999
Q ss_pred CChhhHHHHhc-ccccEEEeccCCCee---eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcC
Q 021862 164 GNQHLNEAIKG-HRFNLAWIGAFPGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (306)
Q Consensus 164 dd~~~~~~~~~-~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg 239 (306)
||+....+... ....+.+|+..+++. +..+... .+ .+ +.-+....++++|.||.+|+++|+ |+|..+|
T Consensus 221 dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~---~~--~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~g 292 (448)
T COG0771 221 DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL---VF--KG-EKLLPADELKLPGAHNLENALAAL--ALARALG 292 (448)
T ss_pred CcHHHhhhhhhcccceeEEEEccccccccceeecchh---cc--cc-ccccchhhcCCcchhhHHHHHHHH--HHHHHcC
Confidence 99999988776 344566666554321 0011111 01 11 111122378999999999999999 9999999
Q ss_pred CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCCC
Q 021862 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKEC 306 (306)
Q Consensus 240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~~ 306 (306)
++++.|.++|..|+++++|||.+. +.+++.+|+|+.++|+++...+|+.++ +|+++|.||.+|++
T Consensus 293 v~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~ 357 (448)
T COG0771 293 VPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGA 357 (448)
T ss_pred CCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCC
Confidence 999999999999999999999999 699999999999999999999999999 79999999999985
No 3
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.5e-53 Score=403.21 Aligned_cols=284 Identities=27% Similarity=0.394 Sum_probs=233.7
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|+||+|+++||++++|++++++++++++.+++.. .+.++|+||||||||||++|+++||+.+|.++.++||+|.|..
T Consensus 66 ~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p~l 144 (454)
T PRK01368 66 KIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPAL 144 (454)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHHHh
Confidence 578999999999999999999999999999988777 4668999999999999999999999999999999999998864
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
.. ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.
T Consensus 145 ~~----------~~~~~~~VlE~ss~ql~~~~~-~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~ 213 (454)
T PRK01368 145 QA----------KASKDGYVLELSSFQLDLVKT-FTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINI 213 (454)
T ss_pred cc----------cCCCCEEEEEcCchhhccccc-cCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 31 123478999999999876543 8999999999999999999999999999999999888889999999
Q ss_pred CChhhHHHHhcc----cccEEEeccCCCeeeccccccceEEEec-CCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 021862 164 GNQHLNEAIKGH----RFNLAWIGAFPGVKIDTEAKTASFEVPA-VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (306)
Q Consensus 164 dd~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l 238 (306)
||+.+..+.... ..++++|+...............+.+.. ..... ...+.++++|.||++|+++|+ +++..+
T Consensus 214 Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~hn~~Na~aAi--a~~~~l 290 (454)
T PRK01368 214 DNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISF-KLPFNKNLQGKHNCENIAASY--AVAKII 290 (454)
T ss_pred CcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcce-EEEecCCCCchhhHHHHHHHH--HHHHHc
Confidence 999988775432 2367788754211000000000111111 01001 112356899999999999999 899999
Q ss_pred CCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 239 g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
|++++.|+++|++|+++|||||++. ..+++.+|+|+++|||+|++.++++++ ++++|+||++|+
T Consensus 291 gi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~dk~ 354 (454)
T PRK01368 291 GVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIPKE 354 (454)
T ss_pred CCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccCCC
Confidence 9999999999999999999999997 467899999999999999999999995 699999999875
No 4
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.1e-52 Score=397.72 Aligned_cols=279 Identities=28% Similarity=0.424 Sum_probs=230.3
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|+||+|||+||++++|++++++++++++.+++.. +.++|+||||||||||++|++++|+..|.++.+.||+|.|..
T Consensus 71 ~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~~~ 148 (438)
T PRK04663 71 LVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPAL 148 (438)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHHHH
Confidence 578999999999999999999999999999988777 568999999999999999999999999999999999998863
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
... ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++. .+.+|+|.
T Consensus 149 ~~~---------~~~~~~~V~E~ss~~l~~~~-~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~ 215 (438)
T PRK04663 149 DLL---------EQDAELYVLELSSFQLETTS-SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNR 215 (438)
T ss_pred hhh---------cCCCCEEEEEcChhhhccCc-ccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeC
Confidence 211 23458999999999886443 489999999999999999999999999999999874 37999999
Q ss_pred CChhhHHHHhcccccEEEeccCC-CeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 021862 164 GNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (306)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~ 242 (306)
||+....... ..++++||... ++.... .....+.+...+. .+..++++++|+||++|+++|+ ++|..+|+++
T Consensus 216 dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi~~ 288 (438)
T PRK04663 216 DDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADNGQP--VLASAELKLVGRHNVANVLVVL--ALLDAAGVDY 288 (438)
T ss_pred CCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeCCce--eeehhhcCCcchhhHHHHHHHH--HHHHHcCCCH
Confidence 9998654432 34678888643 211110 0111222221111 1123578999999999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC-CCcEEEEECCCCCC
Q 021862 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKE 305 (306)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~-~~~~i~v~G~~~~~ 305 (306)
++|.++|++|++++||||++. ..+++.+|||+|++||+|+.+|++.+. ++|+++|+|||.++
T Consensus 289 ~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~ 351 (438)
T PRK04663 289 RKALDALKSYTGLTHRCQVVA-DNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKG 351 (438)
T ss_pred HHHHHHHHhCCCCCCceEEee-eeCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCC
Confidence 999999999999999999996 357899999999999999999999985 46899999999775
No 5
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1e-51 Score=394.13 Aligned_cols=283 Identities=28% Similarity=0.476 Sum_probs=232.5
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~ 82 (306)
++|+||+|+|+||+++.|++++++++++++.+++... .+.++|+||||||||||++|++++|+..|.++.+.||+|.|+
T Consensus 70 ~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~~~ 149 (445)
T PRK04308 70 ILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV 149 (445)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccHHH
Confidence 5789999999999999999999999999999887762 146899999999999999999999999999988999999987
Q ss_pred hhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEe
Q 021862 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n 162 (306)
....... ...+.|++|+|+|+++++... .++|+++|||||++||+++|+|+|+|+++|.++++ +++.+|+|
T Consensus 150 ~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~-~~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i~n 220 (445)
T PRK04308 150 LEAELQR-----EGKKADVWVLELSSFQLENTE-SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLN 220 (445)
T ss_pred HHHHHhh-----cCCCCcEEEEEeChHHhCcCc-ccCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEEEe
Confidence 6544211 123579999999999887654 48999999999999999999999999999999986 36899999
Q ss_pred CCChhhHHHHhcccccEEEeccCCC--eeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCC
Q 021862 163 FGNQHLNEAIKGHRFNLAWIGAFPG--VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (306)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~ 240 (306)
.||+....+.+. ..++++|+...+ +..... ...+.+. +.. ....++++++|.||++|+++|+ ++|..+|+
T Consensus 221 ~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~--~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi 292 (445)
T PRK04308 221 ADDAFCRAMKRA-GREVKWFSLEHEADFWLERE--TGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAVGL 292 (445)
T ss_pred CCcHHHHHHhhc-CCcEEEecCCCCCceeEecc--CCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHcCC
Confidence 999988777543 456788875422 111110 0112222 111 1112468999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
+++.|.++|++|+++|||||++. ..+++.+|||+|+|||+|+..+++.++ +++++|+|||.++
T Consensus 293 ~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~ 355 (445)
T PRK04308 293 PREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKG 355 (445)
T ss_pred CHHHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCC
Confidence 99999999999999999999996 457789999999999999999999995 4799999999654
No 6
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.3e-51 Score=393.75 Aligned_cols=280 Identities=26% Similarity=0.393 Sum_probs=230.9
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|+||+|+++||++..|++++++++++++.+++.. +.++|+||||||||||++|+++||++.|+++.++|++|.|..
T Consensus 71 ~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~~ 148 (448)
T PRK03803 71 EIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPAL 148 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHHH
Confidence 578999999999999999999999999999988777 568999999999999999999999999999999999999874
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
... ..+.|++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++. .+.+|+|.
T Consensus 149 ~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~ 215 (448)
T PRK03803 149 DLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNR 215 (448)
T ss_pred HHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeC
Confidence 322 124589999999999876554 79999999999999999999999999999999884 47899999
Q ss_pred CChhhHHHHhcccccEEEeccCCC----eeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcC
Q 021862 164 GNQHLNEAIKGHRFNLAWIGAFPG----VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (306)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg 239 (306)
||+.+..+.+. ..++++||...+ +.+... ....+.+. .+.. .+...+++++|+||++|+++|+ ++|..+|
T Consensus 216 dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~l~l~G~Hn~~NalaAi--a~a~~lg 289 (448)
T PRK03803 216 DDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAH-GFER-LMPVRELKLRGSHNLANALAAL--ALGEAAG 289 (448)
T ss_pred CCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEe-CCce-EEehhccCCCCHHHHHHHHHHH--HHHHHcC
Confidence 99988877643 346778875321 111100 11112221 1111 1122468899999999999999 8999999
Q ss_pred CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECCCCCC
Q 021862 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKE 305 (306)
Q Consensus 240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~~~~~ 305 (306)
++++.|.++|++|+++|||||++. ..+++.+|||+|+|||+|+..+++.++ ++|+++|+||+.|+
T Consensus 290 i~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~ 357 (448)
T PRK03803 290 LPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKG 357 (448)
T ss_pred CCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCC
Confidence 999999999999999999999997 457789999999999999999999984 35899999998764
No 7
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.4e-51 Score=392.42 Aligned_cols=282 Identities=26% Similarity=0.370 Sum_probs=233.1
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|+||+++++||++..|++.+++++++++.+.+.. +.++|+||||||||||++|++++|+..|.++.++||+|.|+.
T Consensus 80 lVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p~~ 157 (458)
T PRK01710 80 VIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPLF 157 (458)
T ss_pred EEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChhHH
Confidence 578999999999999999999999999999877665 568999999999999999999999999999988999999886
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
.... ...+.|++|+|+|+++..... ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.
T Consensus 158 ~~~~-------~~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~ 228 (458)
T PRK01710 158 SNIE-------EIKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNK 228 (458)
T ss_pred HHHh-------hCCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4321 122568999999998877654 6999999999999999999999999999999999888889999999
Q ss_pred CChhhHHHHhcccccEEEeccCCCeeecccc-ccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 021862 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (306)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~ 242 (306)
||+.+..+.+....++++||...+... ... ....+.+. +... ...++++++|+||++|+++|+ |+|..+ +++
T Consensus 229 Dd~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i~~ 301 (458)
T PRK01710 229 DNEITNGMEKEAKGDVVKFSRKEKVYE-GAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-VSI 301 (458)
T ss_pred CcHHHHHHHhhcCCcEEEEeCCCCCCC-ceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-CCH
Confidence 999988776554456788886432100 000 01112222 1111 112478999999999999999 788877 999
Q ss_pred HHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
+.|.++|++|+|++||||++. ..+++++|||+|++||.|+..+++.+++ ++++|+||.+++
T Consensus 302 ~~i~~~L~~f~~~~~R~e~~~-~~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~~~~ 362 (458)
T PRK01710 302 ESMKKVATTFSGVEHRCEFVR-EINGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGYDKK 362 (458)
T ss_pred HHHHHHHHhCCCCCcceEEEE-EECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCcCCC
Confidence 999999999999999999986 3578999999999999999999999975 689999997764
No 8
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.4e-51 Score=392.77 Aligned_cols=279 Identities=25% Similarity=0.349 Sum_probs=224.6
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCC-----CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~ 78 (306)
++|+||+||++||++.+|++++++++++++.+++... ...++|+||||||||||++|++++|+..|.++.+.||+
T Consensus 73 ~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni 152 (488)
T PRK03369 73 LVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI 152 (488)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC
Confidence 5789999999999999999999999999998765541 13479999999999999999999999999998899999
Q ss_pred ChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCee
Q 021862 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158 (306)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~ 158 (306)
|.|+.... ..+.+++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|.++++ ++.
T Consensus 153 G~p~~~~~---------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~~ 218 (488)
T PRK03369 153 GSPVLDVL---------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GRV 218 (488)
T ss_pred chHHHHhc---------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CCE
Confidence 99874321 23678999999999987553 48999999999999999999999999999999987 378
Q ss_pred EEEeCCChhhHHHHhccccc-EEEeccCC----CeeeccccccceEEEec-CCeeeEEEeeccCCCChhHHHHHHHHHHH
Q 021862 159 GLLPFGNQHLNEAIKGHRFN-LAWIGAFP----GVKIDTEAKTASFEVPA-VGVVSQLQLHNMKVMGRHNYHNAAVAALS 232 (306)
Q Consensus 159 ~V~n~dd~~~~~~~~~~~~~-~~~~g~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~~~~N~l~A~~~ 232 (306)
+|+|.||+....+.+..... ...++... +..+. +. ..+.... .+.. .....+++++|+||++|+++|+
T Consensus 219 ~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl-- 292 (488)
T PRK03369 219 AVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR-DG--HLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA-- 292 (488)
T ss_pred EEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEE-CC--EEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH--
Confidence 99999999887776543322 22332211 11111 00 0001000 0100 0112467899999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 233 a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
+++..+|+++++|.++|++|+|++||||++. ..+++.+|||+|+|||+|++.+++.++ ++++|+||+.|+
T Consensus 293 a~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~ 362 (488)
T PRK03369 293 ALARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKG 362 (488)
T ss_pred HHHHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCC
Confidence 8999999999999999999999999999997 467899999999999999999999885 699999999885
No 9
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.3e-50 Score=388.31 Aligned_cols=284 Identities=27% Similarity=0.374 Sum_probs=227.9
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhh-----CCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~ 78 (306)
++|+||+|+|+||++++|++++++++++++..++. +....++|+||||||||||++||+++|+..|+++.+.||+
T Consensus 77 ~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni 156 (473)
T PRK00141 77 LVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI 156 (473)
T ss_pred EEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC
Confidence 57899999999999999999999999999976543 2123479999999999999999999999999999999999
Q ss_pred ChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCee
Q 021862 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158 (306)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~ 158 (306)
|.|++.... ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++ .+.
T Consensus 157 g~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~~ 224 (473)
T PRK00141 157 GVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GPV 224 (473)
T ss_pred ChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CCE
Confidence 998874332 134578999999999876543 48999999999999999999999999999999986 368
Q ss_pred EEEeCCChhhHHHHhcc-cccEEEeccCCCeeeccccccceEEEecCCeeeEEE-eeccCCCChhHHHHHHHHHHHHHHH
Q 021862 159 GLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGL 236 (306)
Q Consensus 159 ~V~n~dd~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~G~~~~~N~l~A~~~a~~~ 236 (306)
+|+|.||+.+..+.+.. ..++++||...+...........+....++..+.+. ...++++|.||++|+++|+ +++.
T Consensus 225 ~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~~ 302 (473)
T PRK00141 225 AVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVAR 302 (473)
T ss_pred EEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHHH
Confidence 99999999988876543 236778885421100000001112111122222221 2367899999999999999 8999
Q ss_pred HcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCC
Q 021862 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304 (306)
Q Consensus 237 ~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~ 304 (306)
.+|++.+.+.++|++|+|++||||++. ..++..+|||+|+|||+|++.+++.++ ++++|+||+.|
T Consensus 303 ~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~k 367 (473)
T PRK00141 303 SQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLK 367 (473)
T ss_pred HcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccC
Confidence 999999999999999999888999996 356889999999999999999999996 68999999855
No 10
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2e-50 Score=385.58 Aligned_cols=284 Identities=27% Similarity=0.396 Sum_probs=233.2
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|+||+|+++||++.+|++++++++++.+.+++.. +.++|+||||||||||++|++++|+..|.++.+.|++|.|.+
T Consensus 71 ~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p~~ 148 (447)
T PRK02472 71 LMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPAS 148 (447)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChhhH
Confidence 578999999999999999999999999999866655 568999999999999999999999999999999999998876
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
.... ...+.|++|+|+++.++.... .++|+++|||||++||+++|||+|+|+++|.++++..++++.+|+|.
T Consensus 149 ~~~~-------~~~~~~~~V~E~ss~~~~~~~-~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~ 220 (447)
T PRK02472 149 EVAQ-------KATADDTLVMELSSFQLMGIE-TFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINF 220 (447)
T ss_pred HHHh-------cCCCCCEEEEEcCchhhCccc-ccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4321 123468999999988766443 37999999999999999999999999999999999877789999999
Q ss_pred CChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 021862 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243 (306)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~ 243 (306)
||+.+..+++....++++|+...+...........+.+. +.. .+...+++++|.||++|+++|+ +++..+|++++
T Consensus 221 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~~~ 295 (447)
T PRK02472 221 DQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVSNE 295 (447)
T ss_pred CcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCCHH
Confidence 999888777655556778875432100000000112221 111 1112367899999999999999 89999999999
Q ss_pred HHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCC
Q 021862 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304 (306)
Q Consensus 244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~ 304 (306)
.|.++|++|++++||||++. ..+++.+|+|+|+|||+|+..+++.++ +++++|+|+.++
T Consensus 296 ~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~~-~~ii~I~g~~~~ 354 (447)
T PRK02472 296 AIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGFN-QPVVLLAGGLDR 354 (447)
T ss_pred HHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhCC-CCEEEEECCCCC
Confidence 99999999999999999996 356789999999999999999999984 689999999865
No 11
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.2e-50 Score=384.47 Aligned_cols=286 Identities=27% Similarity=0.376 Sum_probs=228.9
Q ss_pred ecccccccccCch----HHHHHHhcCCeeeehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCccccc
Q 021862 4 LWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 4 ~~~~~~~~~~~~p----~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
++|+||+|+++|| ++..+++.+++++++++.+++... .+.++|+||||||||||++||+++|++.|+++.++|
T Consensus 68 ~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~g 147 (460)
T PRK01390 68 ALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGG 147 (460)
T ss_pred EEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcC
Confidence 5789999999988 999999999999999998877641 256899999999999999999999999999999999
Q ss_pred CCChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCC
Q 021862 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (306)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~ 156 (306)
|+|.|+..... ..+.+++|+|+|+++++.... ++|+++|||||+.||+++|||+|+|+++|.++++..++
T Consensus 148 nig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~~- 217 (460)
T PRK01390 148 NIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQGP- 217 (460)
T ss_pred ccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCC-
Confidence 99998764321 235689999999999876554 79999999999999999999999999999999997666
Q ss_pred eeEEEeCCChhhHHHHhcc---cccEEEeccCCCe--eeccccccceEEEecCCeeeEEEe-eccCCCChhHHHHHHHHH
Q 021862 157 KLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAVAA 230 (306)
Q Consensus 157 ~~~V~n~dd~~~~~~~~~~---~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~G~~~~~N~l~A~ 230 (306)
+.+|+|.||+.+..+.+.. ..++++|+..... ..... ....+..........+.. ..++++|.||++|+++|+
T Consensus 218 ~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAi 296 (460)
T PRK01390 218 DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAY 296 (460)
T ss_pred CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHH
Confidence 8999999999887775443 3456777654210 00000 011122211100001100 014789999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 231 ~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
+++..+|++++.|.++|++|+++|||||++. ..+++.+|||+|+|||+|+.++|+.++ ++++|+||++++
T Consensus 297 --aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~-~~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~ 366 (460)
T PRK01390 297 --AAARALGLSPEEIAAGLASFPGLAHRMEQVG-RRGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKE 366 (460)
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCCCceEEEe-eeCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCC
Confidence 8999999999999999999998999999996 356789999988999999999999875 789999999875
No 12
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.9e-50 Score=383.49 Aligned_cols=286 Identities=28% Similarity=0.442 Sum_probs=230.0
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++++||+++++||++++|++.+++++++++.+++.. .+.++|+||||||||||++||+++|+..|.++...||+|.|++
T Consensus 71 ~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~~~ 149 (459)
T PRK02705 71 LVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAAC 149 (459)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChhHH
Confidence 467899999999999999999999999999988776 4678999999999999999999999999999988999999887
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
.... +.. ....+.|++|+|+|+++++.... ++|+++|||||++||+++|||+|+|+++|.++++. ++.+|+|.
T Consensus 150 ~~~~--~~~-~~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~ 222 (459)
T PRK02705 150 ELAL--LRS-GKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNG 222 (459)
T ss_pred HHHh--hhh-ccCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEEC
Confidence 5432 000 12346789999999998887765 89999999999999999999999999999999873 68999999
Q ss_pred CChhhHHHHhcccccEEEeccCCC-eeec-ccc--ccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcC
Q 021862 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKID-TEA--KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (306)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg 239 (306)
||+.+..+.+... +.++|+...+ .... .+. ......+...+. .+...+++++|.||++|+++|+ +++..+|
T Consensus 223 dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~l~G~hn~~NalaAi--a~a~~lg 297 (459)
T PRK02705 223 DDPYLRQHRSSWP-KGYWTSTQGKASLLGQADGWILEEGWVVERGEP--LFPLSALKMPGAHNLQNLLLAV--AAARLAG 297 (459)
T ss_pred CCHHHHHHHhcCC-ceEEeccCCccccccccceeEecCCEEEECCcc--eeeHHHcCCccHHHHHHHHHHH--HHHHHcC
Confidence 9998887765432 3456654211 1000 000 000011111110 1111367899999999999999 8999999
Q ss_pred CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCC
Q 021862 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304 (306)
Q Consensus 240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~ 304 (306)
++++.|.++|++|++++||||++. ..+++.+|+|+++|||+|++.+++.+++ ++++|+|||.+
T Consensus 298 v~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~~-~~i~IlGg~~~ 360 (459)
T PRK02705 298 LSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVPG-PVILIAGGEAK 360 (459)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCCC-CeEEEecCccC
Confidence 999999999999999999999986 4567899999889999999999999974 78999999875
No 13
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.3e-50 Score=381.10 Aligned_cols=280 Identities=27% Similarity=0.427 Sum_probs=228.7
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
+.|+||+++++||++..|++++.+++++.+.+++.. +.++|+||||||||||++||++||+..|.++.++||+|.|..
T Consensus 68 ~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~~ 145 (438)
T PRK03806 68 LIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPAL 145 (438)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhHH
Confidence 578999999999999999999999999998877666 568999999999999999999999999999999999998763
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEEEe
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP 162 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V~n 162 (306)
.. . .++.+++|+|+|+++++... .++|+++|||||++||+|+| +|+|+|+++|.++++. .+.+|+|
T Consensus 146 ~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n 212 (438)
T PRK03806 146 SL-L--------DQECELYVLELSSFQLETTS-SLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVN 212 (438)
T ss_pred Hh-h--------ccCCCEEEEEccchhhccCc-ccCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEe
Confidence 21 1 23468999999999887554 37899999999999999999 6999999999999874 4789999
Q ss_pred CCChhhHHHHhcccccEEEeccCC-CeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 021862 163 FGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (306)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~ 241 (306)
.||+.+..+.+. ..++.+|+... ++..... ....+.+.. +.. .+..++++++|.||++|+++|+ ++|+.+|++
T Consensus 213 ~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~ 286 (438)
T PRK03806 213 ADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVK-GEK-VLNTKEMKLSGQHNYTNALAAL--ALADAVGIP 286 (438)
T ss_pred CCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEec-Cce-eeehhhcCCcccccHHHHHHHH--HHHHHcCCC
Confidence 999988775443 34567777532 2211110 111111111 111 1123478999999999999999 899999999
Q ss_pred HHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC-CCcEEEEECCCCCC
Q 021862 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKE 305 (306)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~-~~~~i~v~G~~~~~ 305 (306)
+++|+++|++|++++||||++. ..+++.+|+|+|+|||+|++++++.++ ++|+++|+|+++|.
T Consensus 287 ~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~ 350 (438)
T PRK03806 287 RASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKS 350 (438)
T ss_pred HHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCC
Confidence 9999999999999999999996 456889999988999999999999996 46799999999774
No 14
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.3e-50 Score=382.92 Aligned_cols=283 Identities=24% Similarity=0.316 Sum_probs=229.2
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHH-HHhhCCC---CCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCC
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~~~---~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g 79 (306)
++|+||+|||+||+++.|++++++++++++. +.+.... ..++|+||||||||||++|+++||+..|.++.+.||+|
T Consensus 72 ~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 151 (468)
T PRK04690 72 VVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIG 151 (468)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCCC
Confidence 5789999999999999999999999999998 4443311 24799999999999999999999999999999999999
Q ss_pred hhhhhhhhccccCCCCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCee
Q 021862 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158 (306)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~ 158 (306)
.|+..... ...+.+++|+|+|++++..... .++|+++|||||++||+++|+|+|+|.++|.++++... .+.
T Consensus 152 ~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~-~~~ 223 (468)
T PRK04690 152 VPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGR-PRI 223 (468)
T ss_pred cchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCC-CCe
Confidence 88854321 1235689999999998876543 37899999999999999999999999999999998654 368
Q ss_pred EEEeCCChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 021862 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (306)
Q Consensus 159 ~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l 238 (306)
+|+|.||+....+.. ...++++|+...+.... ..+.+.. +. ..+....++++|.||++|+++|+ +++..+
T Consensus 224 ~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~~-~~~~~~~~~l~G~h~~~Na~~A~--a~~~~l 293 (468)
T PRK04690 224 ALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-EQ-ALFDTALVPLPGRHNRGNLCAVL--AALEAL 293 (468)
T ss_pred EEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-Cc-eEEeeccccCccHhhHHHHHHHH--HHHHHc
Confidence 899999998766532 33467777753221111 1122221 11 11223467899999999999999 899999
Q ss_pred CCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 239 g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
|++++.|.++|++|+++|||||++. +.+++.+|||+++|||+|+..+++.++++++++|+||++|+
T Consensus 294 gi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~ 359 (468)
T PRK04690 294 GLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRG 359 (468)
T ss_pred CCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCC
Confidence 9999999999999988999999996 45689999998899999999999999877899999997654
No 15
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.1e-49 Score=381.60 Aligned_cols=287 Identities=30% Similarity=0.414 Sum_probs=228.3
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCC--CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~ 81 (306)
++|++|+++|++|++..|++.+++++++++.+++... ++.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus 81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig~~ 160 (480)
T PRK01438 81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTP 160 (480)
T ss_pred EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCccHH
Confidence 4679999999999999999999999999998776652 24579999999999999999999999999999889999988
Q ss_pred hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~ 161 (306)
+..... ...++|++|+|+|+++++..+. ++|+++|||||+.||+++|||+|+|+++|.++++. ..+.+|+
T Consensus 161 ~~~~~~-------~~~~~~~~V~E~ss~~l~~~~~-i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~v~ 230 (480)
T PRK01438 161 VLDAVR-------DPEGYDVLAVELSSFQLHWSPS-VSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVACVY 230 (480)
T ss_pred HHHHHh-------cCCCCCEEEEEcChHHhCcCcc-cCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceEEE
Confidence 764321 2346799999999999876653 78999999999999999999999999999999985 3478999
Q ss_pred eCCChhhHHHHhcc----cccEEEeccCCC----eeeccccc-cceEEEecCCeeeEEE-eeccCCCChhHHHHHHHHHH
Q 021862 162 PFGNQHLNEAIKGH----RFNLAWIGAFPG----VKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAAL 231 (306)
Q Consensus 162 n~dd~~~~~~~~~~----~~~~~~~g~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~G~~~~~N~l~A~~ 231 (306)
|.||+.+..+.+.. ..++++|+...+ +....... ...+.....+..+.+. ..+++++|+||++|+++|+
T Consensus 231 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi- 309 (480)
T PRK01438 231 NVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAAA- 309 (480)
T ss_pred eCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHHH-
Confidence 99999888776533 346677764321 11110000 0001111001111111 1257899999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 232 ~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
+++..+|++.+.|+++|++|+|++||||++. ..+++.+|||+|+|||+|++.+|+.++ ++++|+||+.++
T Consensus 310 -a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~-~~~~~~iiDDs~ahNp~a~~aaL~~l~--~i~~I~gG~~~~ 379 (480)
T PRK01438 310 -ALARSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAASLAAYP--SVVWIAGGLAKG 379 (480)
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEecCccCCHHHHHHHHHhCC--CEEEEEecccCC
Confidence 8899999999999999999999899999996 356788999989999999999999994 789999987653
No 16
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.4e-49 Score=376.63 Aligned_cols=287 Identities=28% Similarity=0.464 Sum_probs=234.0
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
+++++++++++||++..|++++++++++++.+++.. + .++|+||||||||||++||.++|+..|.++++.|++|.|+.
T Consensus 71 ~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~~~ 148 (450)
T PRK14106 71 LVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLI 148 (450)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHHHH
Confidence 467899999999999999999999999999988877 3 78999999999999999999999999998889999998876
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
.... ...+.+++|+|+|+++..... .++|+++|||||+.||+++|||+|+|+++|.++++..++.+.+++|.
T Consensus 149 ~~~~-------~~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~ 220 (450)
T PRK14106 149 DAVE-------EYGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNY 220 (450)
T ss_pred HHHh-------cCCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 4422 123568999999987654333 37999999999999999999999999999999999888889999999
Q ss_pred CChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEE-EeeccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 021862 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (306)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~ 242 (306)
||+....+.+..+.++++||.+.............+.+..++..... ...+++++|.||++|+++|+ +++..+|+++
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi~~ 298 (450)
T PRK14106 221 DDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGISP 298 (450)
T ss_pred CcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCCCH
Confidence 99988887776677788888643111000000112223322221111 12367899999999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCC
Q 021862 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304 (306)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~ 304 (306)
+++.++|++|++.+||||++. ..++..+|+|+|+|||+|++++++.++. ++++|+|+|.+
T Consensus 299 ~~i~~~L~~~~~~~gR~e~i~-~~~~~~vi~D~~ahNP~s~~~~l~~l~~-~~i~v~g~~~~ 358 (450)
T PRK14106 299 DVIANTLKTFKGVEHRIEFVA-EINGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYDK 358 (450)
T ss_pred HHHHHHHHhCCCCCcceEEEe-eECCEEEEeCCCccCHHHHHHHHHhCCC-CeEEEeCCcCC
Confidence 999999999999999999986 3456889999889999999999999964 68889998865
No 17
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.3e-49 Score=363.47 Aligned_cols=278 Identities=21% Similarity=0.288 Sum_probs=236.8
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc--cccCCChh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLGNP 81 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~--~~g~~g~~ 81 (306)
.+|+|++++++|||++.|+++++|+++|.+++.+++ +....|+|+||+||||||.||+++|+++|++.. ++|.....
T Consensus 69 ~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~~ 147 (459)
T COG0773 69 VVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNF 147 (459)
T ss_pred eEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccccC
Confidence 478999999999999999999999999999999999 678899999999999999999999999999863 34433222
Q ss_pred hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~ 161 (306)
-.... ....+++|+|++|++..++. ++|+++|+|||..||+|+|+++|++.+++..+++.++..|.+|+
T Consensus 148 g~na~---------~g~~~~fV~EADEsD~sFl~--~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~ 216 (459)
T COG0773 148 GTNAR---------LGSGDYFVAEADESDSSFLH--YNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVV 216 (459)
T ss_pred Ccccc---------cCCCceEEEEeccccccccc--CCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEEE
Confidence 11111 22337899999999877765 79999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHhc-ccccEEEeccCC--Cee---eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862 162 PFGNQHLNEAIKG-HRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (306)
Q Consensus 162 n~dd~~~~~~~~~-~~~~~~~~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~ 235 (306)
|.|||.++.+... +..++++||.+. ++. +..+..++.|++...++ .+..+.++++|+||+.|+++|+ |+|
T Consensus 217 ~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a~a 292 (459)
T COG0773 217 CGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--AVA 292 (459)
T ss_pred ECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--HHH
Confidence 9999999998776 667789999885 432 23344445566655554 3345689999999999999999 999
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc----C-CCcEEEEE
Q 021862 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----K-GHKCVILL 299 (306)
Q Consensus 236 ~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~----~-~~~~i~v~ 299 (306)
..+|++.+.|+++|++|+++++|||++. +.+++++|||| +|+|..+.++|+.+ + ++|+++||
T Consensus 293 ~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDDY-aHHPtEI~aTL~aaR~~~~~~~rIvaif 359 (459)
T COG0773 293 RELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDDY-AHHPTEIKATLAAARQKVPGGKRIVAVF 359 (459)
T ss_pred HHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEecC-CCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 9999999999999999999999999888 57889999996 99999999999976 3 37898887
No 18
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=6.5e-49 Score=374.90 Aligned_cols=283 Identities=22% Similarity=0.286 Sum_probs=222.5
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc-----cccCC
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-----VGGNL 78 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~-----~~g~~ 78 (306)
++|+||+|+|+||+++.|++++++++++++.+++...+..++|+||||||||||++|++++|++.|+++. +.||+
T Consensus 63 ~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn~ 142 (448)
T TIGR01081 63 LVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNF 142 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccccC
Confidence 5789999999999999999999999999999877531233499999999999999999999999998863 56777
Q ss_pred ChhhhhhhhccccCCCCCCCCcEEEEEecccccccC---Cc--eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccc
Q 021862 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153 (306)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~---~~--~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~ 153 (306)
|.|.. . .+.|++|+|+|+++.... .. .++|+++|||||++||+++|+|+|+|+++|.++++.+
T Consensus 143 G~~~~---~---------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~ 210 (448)
T TIGR01081 143 GVSAR---L---------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTV 210 (448)
T ss_pred ccccc---c---------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhC
Confidence 76652 1 135889999999876532 22 2689999999999999999999999999999999977
Q ss_pred cCCeeEEEeCCChhhHHHHhc-ccccEEEeccCCCeeec-cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHH
Q 021862 154 VNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKID-TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231 (306)
Q Consensus 154 ~~~~~~V~n~dd~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~ 231 (306)
++++.+|+|.||+.+..+... ...++.+|+...++... .......+.+...+.. ...++++++|.||++|+++|+
T Consensus 211 ~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A~- 287 (448)
T TIGR01081 211 PGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMAI- 287 (448)
T ss_pred CCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHHH-
Confidence 777899999999988776542 22345666533222110 0011112333222211 112367899999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (306)
Q Consensus 232 ~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~ 304 (306)
+++..+|++.+.+.++|++|++++||||++. ..+++.+|+|+ +|||+|++.++++++ ++|+++|+||.++
T Consensus 288 -a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~ 361 (448)
T TIGR01081 288 -AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRSN 361 (448)
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCcc
Confidence 8999999999999999999999999999996 35678999998 999999999999885 3478999997653
No 19
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=4.4e-49 Score=377.35 Aligned_cols=283 Identities=19% Similarity=0.264 Sum_probs=226.4
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCC--cccccCCChh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP 81 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~--~~~~g~~g~~ 81 (306)
++|+||+|+++||++++|++++++++++++.+++.. .+.++|+||||||||||++|+++||+++|++ +.++|+.+++
T Consensus 69 ~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~ 147 (461)
T PRK00421 69 VVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA 147 (461)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC
Confidence 578999999999999999999999999999998877 3558999999999999999999999999965 4456654443
Q ss_pred hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~ 161 (306)
-.... ..+.+++|+|+|+++.... .++|+++|||||++||+++|+|+|+|+++|.+++..+++++.+|+
T Consensus 148 ~~~~~---------~~~~~~~V~E~ss~q~~~~--~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~ 216 (461)
T PRK00421 148 GTNAR---------LGNSDYFVAEADESDRSFL--KLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVA 216 (461)
T ss_pred Ccccc---------cCCCCEEEEECCCccchHh--hcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 22111 2356899999999876442 379999999999999999999999999999999988877899999
Q ss_pred eCCChhhHHHHhcccccEEEeccCC--Ceeec---cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHH
Q 021862 162 PFGNQHLNEAIKGHRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (306)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~g~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~ 236 (306)
|.||+.+..+.+....++++|+..+ ++... .......+.+...+.. +...+++++|.||++|+++|+ +++.
T Consensus 217 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~h~~~N~~aA~--a~~~ 292 (461)
T PRK00421 217 CGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEV--LGDFTLPLPGRHNVLNALAAI--AVAL 292 (461)
T ss_pred ECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCce--EEEEEecCCcHHHHHHHHHHH--HHHH
Confidence 9999998888766556778887643 22111 0111122333222211 123478899999999999999 8999
Q ss_pred HcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEEC--CCCC
Q 021862 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG--GQAK 304 (306)
Q Consensus 237 ~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G--~~~~ 304 (306)
.+|+++++|.++|++|++++||||++. ..+++.+|+|+ +|||.++..++++++ ++|+++|+| |+.+
T Consensus 293 ~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r 364 (461)
T PRK00421 293 ELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSR 364 (461)
T ss_pred HcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCcc
Confidence 999999999999999999999999996 45678999995 999999999888774 368999998 4443
No 20
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=1.1e-48 Score=373.38 Aligned_cols=283 Identities=19% Similarity=0.291 Sum_probs=229.1
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCC--CcccccCCChh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLGNP 81 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~--~~~~~g~~g~~ 81 (306)
++|+||+|+++||++++|++++++++++++.+++.. ++.++|+||||||||||++|+++||+..|+ ++.++|+.+.+
T Consensus 61 ~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~ 139 (448)
T TIGR01082 61 VVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEA 139 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccccC
Confidence 578999999999999999999999999999998887 356899999999999999999999999997 55677887776
Q ss_pred hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhh-ccCCHHHHHHHHHHhhccccCCeeEE
Q 021862 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKLGL 160 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~-~~gt~e~~~~~k~~i~~~~~~~~~~V 160 (306)
..... ....|++|+|+|+++... ..++|+++|||||++||+| +|+|+|+|+++|.++++.+++++.+|
T Consensus 140 ~~~~~---------~~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V 208 (448)
T TIGR01082 140 GTNAR---------LGSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAV 208 (448)
T ss_pred Ccccc---------cCCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 54322 123588999999988765 2479999999999999999 88999999999999999887789999
Q ss_pred EeCCChhhHHHHhcccccEEEeccCC-C--eee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862 161 LPFGNQHLNEAIKGHRFNLAWIGAFP-G--VKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (306)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~g~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~ 234 (306)
+|.||+.+..+.+....++++|+... + +.. ........+.+...+.. ....+++++|.||++|+++|+ ++
T Consensus 209 ~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~G~hn~~N~~aA~--a~ 284 (448)
T TIGR01082 209 ICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKL--YLEFTLNLPGRHNVLNALAAI--AV 284 (448)
T ss_pred EECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCce--EEEEEecCccHhHHHHHHHHH--HH
Confidence 99999998887765555778887642 1 111 11111122333222211 112467899999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECC--CCC
Q 021862 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAK 304 (306)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~--~~~ 304 (306)
+..+|++++.|.++|++|++++||||++. ..+++.+|+|+ +|||.++.++++.++ ++|+++|+|+ +.|
T Consensus 285 ~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D~-ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r 358 (448)
T TIGR01082 285 ALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDDY-AHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSR 358 (448)
T ss_pred HHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEcC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCcc
Confidence 99999999999999999999999999996 46779999995 999999999888763 3589999985 554
No 21
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.3e-48 Score=372.55 Aligned_cols=290 Identities=28% Similarity=0.387 Sum_probs=228.0
Q ss_pred ecccccccccCc----hHHHHHHhcCCeeeehHHHHHhhCC------CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc
Q 021862 4 LWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 4 ~~~~~~~~~~~~----p~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++|+||+|+++| |++.+|++.+++++++++.+++.+. .+.++|+||||||||||++||++||+..|++++
T Consensus 72 ~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~ 151 (498)
T PRK02006 72 LVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA 151 (498)
T ss_pred EEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE
Confidence 578999999998 9999999999999999998876651 124899999999999999999999999999998
Q ss_pred cccCCChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccc
Q 021862 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153 (306)
Q Consensus 74 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~ 153 (306)
+.|+++.+.......... .....+++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++
T Consensus 152 ~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~~-~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~-- 225 (498)
T PRK02006 152 VAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTHT-LAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG-- 225 (498)
T ss_pred EECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCcccc-cCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC--
Confidence 888888665433221111 1112478999999998765543 7999999999999999999999999999999987
Q ss_pred cCCeeEEEeCCChhhHHHHhcc-cccEEEeccCCC-----eeeccccccceEEEecCCee-------------------e
Q 021862 154 VNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPG-----VKIDTEAKTASFEVPAVGVV-------------------S 208 (306)
Q Consensus 154 ~~~~~~V~n~dd~~~~~~~~~~-~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~-------------------~ 208 (306)
+++.+|+|.|||.+..+.... ..++++||...+ +...... ...+.+...+.. .
T Consensus 226 -~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (498)
T PRK02006 226 -PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDN-GMAWLVEAEDRDAADPAPSRRRKKDAAPPPDI 303 (498)
T ss_pred -CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecC-CeEEEEecCccccccccccccccccccccccc
Confidence 478999999999988876543 246788875421 1110000 000111100000 0
Q ss_pred ---E-EEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHH
Q 021862 209 ---Q-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC 284 (306)
Q Consensus 209 ---~-~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~ 284 (306)
. ....+++++|.||++|+++|+ ++++.+|++++.+.++|++|++++||||++. ..+++.+|||+|++||.|+.
T Consensus 304 ~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~-~~~g~~~idDs~~tn~~s~~ 380 (498)
T PRK02006 304 RLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVA-TIDGVDYYDDSKGTNVGATV 380 (498)
T ss_pred chhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHH
Confidence 1 111367899999999999999 8999999999999999999999999999996 35788999999999999999
Q ss_pred HHHhccCCCcEEEEECCCCCC
Q 021862 285 TGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 285 ~al~~~~~~~~i~v~G~~~~~ 305 (306)
++++.++ +|+++|+||+.++
T Consensus 381 ~al~~~~-~~ii~IlGg~~~~ 400 (498)
T PRK02006 381 AALDGLA-QRVVLIAGGDGKG 400 (498)
T ss_pred HHHHhCC-CCEEEEEcCCCCC
Confidence 9999985 5799999998653
No 22
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=1.9e-48 Score=371.78 Aligned_cols=282 Identities=20% Similarity=0.278 Sum_probs=213.0
Q ss_pred cccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC----Ch
Q 021862 5 WLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GN 80 (306)
Q Consensus 5 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~----g~ 80 (306)
.|+++++++++|.+. .++....|+.++..++.. .+.++|+||||||||||++||+++|+..|.++.+.|++ |.
T Consensus 65 vv~~~~~~~~~p~i~--v~d~~~al~~la~~~~~~-~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G~ 141 (453)
T PRK10773 65 LLVSRPLDIDLPQLV--VKDTRLAFGQLAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGV 141 (453)
T ss_pred EEEecCcCCCCCEEE--ECCHHHHHHHHHHHHHhc-CCCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCccc
Confidence 455666655667543 223334566666555443 25689999999999999999999999999988777774 44
Q ss_pred hhhhhhhccccCCCCCCCCcEEEEEecc---cccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCe
Q 021862 81 PLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (306)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~~~---~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~ 157 (306)
|.+... ..++.+++|+|+|+ ++++.....++|+++|||||++||+|+|+|+|+|+++|.++++.++++|
T Consensus 142 ~~~~~~--------~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g 213 (453)
T PRK10773 142 PLTLLR--------LTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENG 213 (453)
T ss_pred ccHHhc--------CCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCC
Confidence 433211 13467999999996 3444444458999999999999999999999999999999999888889
Q ss_pred eEEEeCCChhhHHHHhcccc-cEEEeccCC----Ceee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHH
Q 021862 158 LGLLPFGNQHLNEAIKGHRF-NLAWIGAFP----GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (306)
Q Consensus 158 ~~V~n~dd~~~~~~~~~~~~-~~~~~g~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A 229 (306)
.+|+|.||+....+.+.... ++.+||... ++.. ........+.+...+... .++++++|+||++|+++|
T Consensus 214 ~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~---~~~l~l~G~hnv~NalaA 290 (453)
T PRK10773 214 IAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSV---DVLLPLPGRHNIANALAA 290 (453)
T ss_pred EEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceE---EEEecCCcHhHHHHHHHH
Confidence 99999999988776654433 567788532 2211 111112233333221112 247899999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC--CCcEEEEECCCC
Q 021862 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQA 303 (306)
Q Consensus 230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~--~~~~i~v~G~~~ 303 (306)
+ +++..+|++++.|.++|++|+|++||||++. ..++.+||||+|||||+||+.+|+.++ ++|.++|+|+|.
T Consensus 291 i--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~-~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~ 363 (453)
T PRK10773 291 A--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQ-LAEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMA 363 (453)
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEE-CCCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChh
Confidence 9 8999999999999999999999999999986 356789999999999999999999875 356799999974
No 23
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=2.4e-47 Score=361.00 Aligned_cols=267 Identities=23% Similarity=0.308 Sum_probs=206.9
Q ss_pred HhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC----CChhhhhhhhccccCCCCCC
Q 021862 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKP 97 (306)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~ 97 (306)
+++...+|+.++..++.. .+.++|+||||||||||++|++++|++.|..+.+.|+ +|.|.+.. ....
T Consensus 54 V~d~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l--------~~~~ 124 (417)
T TIGR01143 54 VDDTLEALQALASAKRAK-FSGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLL--------RAPG 124 (417)
T ss_pred ECCHHHHHHHHHHHHHhh-CCCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHh--------cCCC
Confidence 445556677777655544 2578999999999999999999999999987777777 34444322 1255
Q ss_pred CCcEEEEEecc-cccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhc
Q 021862 98 KFQVAVVEVSS-YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG 174 (306)
Q Consensus 98 ~~~~~V~E~~~-~~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~ 174 (306)
+++++|+|+|+ +..+ .....++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.||+....+.+.
T Consensus 125 ~~~~~VlE~g~s~~g~~~~~~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~ 204 (417)
T TIGR01143 125 DHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKR 204 (417)
T ss_pred CCeEEEEEeCCCCCCcHHHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHh
Confidence 78999999983 3322 22334799999999999999999999999999999999988888999999999988877665
Q ss_pred cc-ccEEEeccCC-Ceee---cccccc-ceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 021862 175 HR-FNLAWIGAFP-GVKI---DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248 (306)
Q Consensus 175 ~~-~~~~~~g~~~-~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~ 248 (306)
.. .++++||... ++.. ..+... ..+.+...+... .++++++|+||++|+++|+ +++..+|+++++|.++
T Consensus 205 ~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~ 279 (417)
T TIGR01143 205 LPNKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEG 279 (417)
T ss_pred ccCCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHH
Confidence 44 4678888543 2111 111111 233333222222 2478999999999999999 8999999999999999
Q ss_pred hhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCC--CcEEEEECCCCC
Q 021862 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAK 304 (306)
Q Consensus 249 l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~--~~~i~v~G~~~~ 304 (306)
|++|+|++||||+. ..+++.+|||+|||||+|++.+|+.++. +|+++|+|+|.+
T Consensus 280 l~~~~~~~gR~e~~--~~~~~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e 335 (417)
T TIGR01143 280 LAELKLVKGRFEIQ--TKNGLTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAE 335 (417)
T ss_pred HHhCCCCCCceeEE--cCCCcEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchh
Confidence 99999999999954 5678999999889999999999999862 588999999853
No 24
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1e-45 Score=355.24 Aligned_cols=271 Identities=18% Similarity=0.183 Sum_probs=203.8
Q ss_pred HhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcE
Q 021862 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101 (306)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
+++.+.+|+.++..++.. .+.++|+||||||||||++||.++|+..|.++.+.|++++.+.... . +.. ...+.++
T Consensus 88 V~d~~~al~~la~~~~~~-~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~-~-l~~--~~~~~~~ 162 (479)
T PRK14093 88 VDDVLAALRDLGRAARAR-LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPL-S-LAR--CPADARF 162 (479)
T ss_pred ECCHHHHHHHHHHHHHHh-cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhH-H-HHc--CCCCCcE
Confidence 344445566666544444 4778999999999999999999999999988877776543322110 0 011 1356799
Q ss_pred EEEEecc-cccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhccc--
Q 021862 102 AVVEVSS-YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-- 176 (306)
Q Consensus 102 ~V~E~~~-~~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~-- 176 (306)
+|+|+|+ +..+ .....++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+.+...
T Consensus 163 ~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~ 242 (479)
T PRK14093 163 AVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAA 242 (479)
T ss_pred EEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhc
Confidence 9999994 4333 2333579999999999999999999999999999999998878899999999999887765432
Q ss_pred --ccEEEeccCCC--eeec---cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 021862 177 --FNLAWIGAFPG--VKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249 (306)
Q Consensus 177 --~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l 249 (306)
.++++||...+ +... .......+.+...+... .++++++|.||++|+++|+ +++..+|++.++|.++|
T Consensus 243 ~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l 317 (479)
T PRK14093 243 GIARIVSFGADEKADARLLDVALHADCSAVHADILGHDV---TYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALAL 317 (479)
T ss_pred cCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHH
Confidence 25788885432 2111 01111223332222222 2478999999999999999 89999999999999999
Q ss_pred hcCCCCCCeeeEEeec--cCCEEEEEcCCCCcHHHHHHHHhccC------CCcEEEEECCC
Q 021862 250 EILRTPPHRMQIVHRD--IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQ 302 (306)
Q Consensus 250 ~~~~~~~gR~e~~~~~--~~~~~ii~D~~~~n~~s~~~al~~~~------~~~~i~v~G~~ 302 (306)
++|+|++||+|.+..+ .++..||||+|||||+||+++|+.++ ++|+|+|||+|
T Consensus 318 ~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m 378 (479)
T PRK14093 318 SQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDM 378 (479)
T ss_pred HhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECCh
Confidence 9999999999987321 34589999999999999999999874 35899999997
No 25
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.8e-46 Score=347.51 Aligned_cols=266 Identities=24% Similarity=0.334 Sum_probs=216.1
Q ss_pred hcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC----ChhhhhhhhccccCCCCCCC
Q 021862 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GNPLSEAAFHCIALPSSKPK 98 (306)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~----g~~~~~~~~~~~~~~~~~~~ 98 (306)
.+.+.+|+.++..++.. .+.++|+||||+|||||+.|++++|+..|....+.||+ |.|++.... ..+
T Consensus 84 ~d~~~al~~la~~~~~~-~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~ 154 (451)
T COG0770 84 LDTLEALGKLAKAYRQK-FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PAD 154 (451)
T ss_pred HHHHHHHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCc
Confidence 33444666777666555 48899999999999999999999999998888777775 556554443 456
Q ss_pred CcEEEEEecc---cccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcc
Q 021862 99 FQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175 (306)
Q Consensus 99 ~~~~V~E~~~---~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~ 175 (306)
.|++|+|+|+ |++..+..+.+|++++||||+.+|+++|||.|.++++|.+++..++++|++|+|.|++.........
T Consensus 155 ~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~ 234 (451)
T COG0770 155 TEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKI 234 (451)
T ss_pred ccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhc
Confidence 8999999995 5677777778999999999999999999999999999999999999999999999999977776654
Q ss_pred -cccEEEeccCC--Cee---eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 021862 176 -RFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249 (306)
Q Consensus 176 -~~~~~~~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l 249 (306)
..++++||... +.. +..+.....|++...+.+.. +.++++|+||+.|+++|+ ++|+.+|++.++|+++|
T Consensus 235 ~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~---~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L 309 (451)
T COG0770 235 GNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAE---FELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGL 309 (451)
T ss_pred CCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceEE---EEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHH
Confidence 56789998652 221 12222224455544443333 489999999999999999 89999999999999999
Q ss_pred hcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc---CCCcEEEEECCCC
Q 021862 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQA 303 (306)
Q Consensus 250 ~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~---~~~~~i~v~G~~~ 303 (306)
+.+++++||+|.+. ..++.++|||+||.||+||..+++.+ +.++.++|+|+|.
T Consensus 310 ~~~~~~~gR~~~~~-~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ 365 (451)
T COG0770 310 KELKPVKGRLEVIL-LANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDML 365 (451)
T ss_pred HhcCCCCccceeEe-cCCCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChh
Confidence 99999999999444 57889999999999999999999976 4444499999985
No 26
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.3e-45 Score=342.26 Aligned_cols=255 Identities=26% Similarity=0.379 Sum_probs=207.1
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|+||+|+++||++.+|++ ++++++.+++.. .++|+||||||||||++|++++|+++|.. ..||+|.|++
T Consensus 57 ~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~~--~~gniG~p~~ 127 (401)
T PRK03815 57 LEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGAV--SGGNIGTPLA 127 (401)
T ss_pred EEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCCc--EEEEecHhHH
Confidence 46899999999999999988 689999887655 24899999999999999999999999843 4789998876
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
. . ..+.|++|+|+++.+++... .++|+++|||||++||+|+|+|+|+|.++|.++++.+++++.+|+|.
T Consensus 128 ~--~--------~~~~~~~V~E~ss~~~~~~~-~~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~ 196 (401)
T PRK03815 128 E--L--------DKNAKIWVLETSSFTLHYTN-KAKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPK 196 (401)
T ss_pred h--c--------CCCCCEEEEECChHHhhCCc-cCCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEec
Confidence 4 2 22458999999988765444 37999999999999999999999999999999999988899999999
Q ss_pred CChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 021862 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243 (306)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~ 243 (306)
||+... ...++++||...+. . ..+.+.. ..+.+.+. +++|+++|+ +++..+|+ +
T Consensus 197 dd~~~~-----~~~~~~~fg~~~~~------~-~~~~~~~---------~~~~~~~~-~~~NalaA~--a~a~~~G~--~ 250 (401)
T PRK03815 197 KFKNTP-----TKAQKIFYEDEEDL------A-EKFGIDS---------EKINFKGP-FLLDALLAL--AVYKILFD--E 250 (401)
T ss_pred cccccc-----cCCcEEEEecCCcc------c-cceeEeh---------HhcCCchH-HHHHHHHHH--HHHHHhCc--H
Confidence 998642 12456777732111 0 0111111 12334455 499999999 89999994 5
Q ss_pred HHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 244 ~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
.+.++|++|+|+++|||++. ..+++.+|||+|++||+|+.+++++++++|+++|+||.+|+
T Consensus 251 ~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~~k~ 311 (401)
T PRK03815 251 LDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDKG 311 (401)
T ss_pred HHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 56678999999999999996 46789999999999999999999999766889999998764
No 27
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=8.3e-45 Score=368.38 Aligned_cols=275 Identities=15% Similarity=0.204 Sum_probs=218.7
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCC--cccccCCChh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP 81 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~--~~~~g~~g~~ 81 (306)
++|+||+|+++||+++.|++++++++++++.+++.. +..++|+||||||||||+.|+.++|+.+|.+ +.++|+.|.+
T Consensus 66 ~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g~~ 144 (809)
T PRK14573 66 VVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQEG 144 (809)
T ss_pred EEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccc
Confidence 578999999999999999999999999999998887 4558999999999999999999999999986 3567777765
Q ss_pred hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEE
Q 021862 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL 160 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V 160 (306)
+... ..+.|++|+|+|+++.. .. .++|+++|||||++||+|+| +|+|+|+++|..+++.+++++.+|
T Consensus 145 ~~~~----------~~~~d~~V~E~ss~~~~-~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V 212 (809)
T PRK14573 145 LNGY----------SGSSEYFVAEADESDGS-LK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF 212 (809)
T ss_pred cccc----------cCCCCEEEEECCCCcch-hh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 5421 12468999999998633 22 48999999999999999998 799999999999988777789999
Q ss_pred EeCCChhhHHHHhcccccEEEeccCC--Cee---eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862 161 LPFGNQHLNEAIKGHRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (306)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~ 235 (306)
+|.||+...... +..+|+.+. ++. +..+.....+.+...+. .+...+++++|+||++|+++|+ +++
T Consensus 213 ~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a~~ 283 (809)
T PRK14573 213 YNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--GIA 283 (809)
T ss_pred EeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--HHH
Confidence 999999765432 124566432 211 11111111233322221 1123477899999999999999 899
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCC
Q 021862 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ 302 (306)
Q Consensus 236 ~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~ 302 (306)
..+|++.+.|.++|++|++++||||++. ..+++.+|+|+ ||||+|++++++.++ ++|+++|+++.
T Consensus 284 ~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D~-ahnP~~~~a~l~~l~~~~~~~rli~vf~~~ 352 (809)
T PRK14573 284 LTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLEDY-AHHPSEISCTLRAVRDAVGLRRIIAICQPH 352 (809)
T ss_pred HHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEEC-CCCHHHHHHHHHHHHhhcCCCEEEEEEcCC
Confidence 9999999999999999999999999996 45678899994 999999999999873 46899999754
No 28
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=3e-44 Score=343.66 Aligned_cols=264 Identities=25% Similarity=0.310 Sum_probs=199.5
Q ss_pred hcCCeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-ccCC-------
Q 021862 23 QSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP------- 93 (306)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~------- 93 (306)
++...+|++++..++..+ ++.++|+||||||||||++|++++|++.|.++++.||.++++....... ..++
T Consensus 74 ~d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~ 153 (460)
T PRK00139 74 PDLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQR 153 (460)
T ss_pred CCHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHH
Confidence 344455666665544332 3678999999999999999999999999999999998877654321100 0111
Q ss_pred ----CCCCCCcEEEEEeccccccc--CCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChh
Q 021862 94 ----SSKPKFQVAVVEVSSYQMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQH 167 (306)
Q Consensus 94 ----~~~~~~~~~V~E~~~~~~~~--~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~ 167 (306)
....++|++|+|+|+++++. +.. ++|+++|||||+.||+++|||+|+|+++|.++++.. .+.+|+|.||+.
T Consensus 154 ~l~~~~~~~~~~~VlE~~s~~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~--~~~~v~n~dd~~ 230 (460)
T PRK00139 154 LLAELVDAGVTYAAMEVSSHALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSEL--GLAAVINADDEV 230 (460)
T ss_pred HHHHHHHCCCCEEEEEcchhhHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcC--CCeEEEEcCcHh
Confidence 01457899999999776542 332 799999999999999999999999999999999863 248999999998
Q ss_pred hHHHHhcccccEEEeccC-CCeeeccccccceEEEecCCeeeEEE-eeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHH
Q 021862 168 LNEAIKGHRFNLAWIGAF-PGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245 (306)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i 245 (306)
+..+... +.+|+.. .+..+ ....+.....+..+.+. .+.++++|+||++|+++|+ +++..+|+++++|
T Consensus 231 ~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i 300 (460)
T PRK00139 231 GRRLLAL----PDAYAVSMAGADL----RATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDA 300 (460)
T ss_pred HHHHHhh----cEEEEecCCCCcE----EEEEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHH
Confidence 8776652 4455543 11111 11112222233333332 4578999999999999999 8999999999999
Q ss_pred HHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECC
Q 021862 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGG 301 (306)
Q Consensus 246 ~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~ 301 (306)
.++|++|+|++||||++. ..+++.+|+| |||||+|++.+++.++ ++|+++|+|+
T Consensus 301 ~~~L~~~~~~~gR~e~~~-~~~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~ 357 (460)
T PRK00139 301 LAALAKLQGVPGRMERVD-AGQGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGC 357 (460)
T ss_pred HHHHHhCCCCCCCcEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 999999999999999995 3467899999 6999999999999985 3689999984
No 29
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=4.6e-44 Score=343.03 Aligned_cols=273 Identities=25% Similarity=0.346 Sum_probs=198.6
Q ss_pred cCCeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhh----ccccCC-----
Q 021862 24 SGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF----HCIALP----- 93 (306)
Q Consensus 24 ~~~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~----~~~~~~----- 93 (306)
+...+|++++..++..+ .+.++|+||||||||||++||+++|+..|+++++.++.|++...... ..++++
T Consensus 65 d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~ 144 (464)
T TIGR01085 65 DLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTL 144 (464)
T ss_pred CHHHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHH
Confidence 33444556654443321 36789999999999999999999999999998777776655321100 000000
Q ss_pred ------CCCCCCcEEEEEecccccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCC
Q 021862 94 ------SSKPKFQVAVVEVSSYQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165 (306)
Q Consensus 94 ------~~~~~~~~~V~E~~~~~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd 165 (306)
....+.|++|+|+|+++++ .+.. ++|+++|||||++||+++|+|+|+|+++|.++++.++++|.+|+|.||
T Consensus 145 ~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd 223 (464)
T TIGR01085 145 QSTLAEMVEAGAQYAVMEVSSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDD 223 (464)
T ss_pred HHHHHHHHHCCCCEEEEEecHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCC
Confidence 1134679999999986654 3333 799999999999999999999999999999999988778899999999
Q ss_pred hhhHHHHhcccccEEEeccCC-------Ceeecc---ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862 166 QHLNEAIKGHRFNLAWIGAFP-------GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (306)
Q Consensus 166 ~~~~~~~~~~~~~~~~~g~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~ 235 (306)
+.+..+.......+.++.... ++.... ......+.+...+... .+.++++|.||++|+++|+ +++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~a 298 (464)
T TIGR01085 224 EYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAGEG---HLHTPLIGRFNVYNLLAAL--ATL 298 (464)
T ss_pred HHHHHHHHhcCCCeEEEEecCCCccccccEEEEEEEEecCceEEEEEeCCceE---EEEecCccHhHHHHHHHHH--HHH
Confidence 998777654433322221111 111100 0011223332221111 2478999999999999999 899
Q ss_pred HHcC-CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEEC-CCCC
Q 021862 236 LDIG-VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLG-GQAK 304 (306)
Q Consensus 236 ~~lg-~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G-~~~~ 304 (306)
..+| ++++.|.++|++|+|++||||++. ..+++.+|+| |+|||+||+.+++.++ ++|+++|+| |.++
T Consensus 299 ~~lg~i~~e~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~ 370 (464)
T TIGR01085 299 LHLGGIDLEDIVAALEKFRGVPGRMELVD-GGQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDR 370 (464)
T ss_pred HHcCCCCHHHHHHHHHhCCCCCCCcEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCC
Confidence 9998 999999999999999999999996 3467899999 6999999999999984 468899999 5443
No 30
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=2.8e-43 Score=363.73 Aligned_cols=267 Identities=20% Similarity=0.250 Sum_probs=203.9
Q ss_pred hcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcC---CCcccccC----CChhhhhhhhccccCCCC
Q 021862 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLG---IEAFVGGN----LGNPLSEAAFHCIALPSS 95 (306)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g---~~~~~~g~----~g~~~~~~~~~~~~~~~~ 95 (306)
++...+|++++..++.. .+.++|+||||||||||++|++++|+..| ..+.+.|+ .|.|++... .
T Consensus 584 ~d~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~--------~ 654 (958)
T PRK11929 584 DDTRAALGRLATAWRAR-FSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLR--------L 654 (958)
T ss_pred CCHHHHHHHHHHHHHhc-CCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhc--------C
Confidence 33344556666555544 36789999999999999999999999984 33455666 344433211 1
Q ss_pred CCCCcEEEEEeccc---ccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHH
Q 021862 96 KPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI 172 (306)
Q Consensus 96 ~~~~~~~V~E~~~~---~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~ 172 (306)
..+.+++|+|+|++ +++.....++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.||+....+.
T Consensus 655 ~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~ 734 (958)
T PRK11929 655 RAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWA 734 (958)
T ss_pred CCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHH
Confidence 45678999999975 455444446999999999999999999999999999999999887889999999999887776
Q ss_pred hcc-cccEEEeccCCCeeec-----cc-----cccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 021862 173 KGH-RFNLAWIGAFPGVKID-----TE-----AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (306)
Q Consensus 173 ~~~-~~~~~~~g~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~ 241 (306)
+.. ..++++||...+..+. .+ .....+.+...+... .++++++|.||++|+++|+ +++..+|++
T Consensus 735 ~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~ 809 (958)
T PRK11929 735 KLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPAGSA---EVYLPLIGEHNLRNALAAI--ACALAAGAS 809 (958)
T ss_pred HhhcCCcEEEEeCCCCcceEeeecccceeecCCCceEEEEEECCceE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence 543 3357788864321110 10 011122222211111 2478999999999999999 899999999
Q ss_pred HHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECCCCC
Q 021862 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK 304 (306)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~~~~ 304 (306)
+++|.++|++|+|+|||||++. ..++..+|||+|||||+|++.+|++++ .+|+++|+|||++
T Consensus 810 ~~~i~~~L~~f~~~~gR~e~~~-~~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e 874 (958)
T PRK11929 810 LKQIRAGLERFQPVAGRMQRRR-LSCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLE 874 (958)
T ss_pred HHHHHHHHhhCCCCCCCceEEE-cCCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchh
Confidence 9999999999999999999996 357899999999999999999999985 2588999999876
No 31
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5e-42 Score=324.74 Aligned_cols=261 Identities=25% Similarity=0.396 Sum_probs=202.8
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~ 82 (306)
+.|.+|+++++||.+..|++++.+++++.+.+.+... .+.++|+||||||||||+.||+++|+..|.++++.||+|.|+
T Consensus 62 lvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p~ 141 (418)
T PRK00683 62 LVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPI 141 (418)
T ss_pred EEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHHH
Confidence 5789999999999999999999999999887654421 255799999999999999999999999999889999999987
Q ss_pred hhhhhccccCCCCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~ 161 (306)
.... .+.+++|+|+|++++..... ...|+++|||||++||+|+|+|+|+|+++|.+++..+.+
T Consensus 142 l~~~----------~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~------ 205 (418)
T PRK00683 142 LDGM----------QQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRN------ 205 (418)
T ss_pred HHHh----------hcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhC------
Confidence 3321 23578999999998765433 234489999999999999999999999999999875432
Q ss_pred eCCChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHH-cCC
Q 021862 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGV 240 (306)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~-lg~ 240 (306)
.|+.... ...+||.. .. . .... .+.....+ ..++++|.||++|+++|+ +++.. +|+
T Consensus 206 -~~~~~~~--------~~~~~~~~--~~-~-~~~~-~~~~~~~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g~ 262 (418)
T PRK00683 206 -PDDLWVG--------DERSYGHS--YL-E-YVQE-IMRLLDKG-------SALKPLYLHDRYNYCAAY--ALANEVFPI 262 (418)
T ss_pred -ccccccc--------ccCCcCce--ee-c-Ccch-hhhhhccc-------cccCCCccchHHHHHHHH--HHHHHhcCC
Confidence 2221110 11122211 00 0 0000 00000011 145788999999999999 88888 699
Q ss_pred CHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
+.++|.++|++|++.+||||++. ..++..+|+|+||+||+|+.++++.++ +|+++|+|||.+.
T Consensus 263 ~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~ 325 (418)
T PRK00683 263 SEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKG 325 (418)
T ss_pred CHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCC
Confidence 99999999999999999999996 357899999999999999999999875 5799999998764
No 32
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=2.6e-42 Score=350.88 Aligned_cols=265 Identities=18% Similarity=0.225 Sum_probs=203.1
Q ss_pred HhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC----CChhhhhhhhccccCCCCCC
Q 021862 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKP 97 (306)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~ 97 (306)
+++...+|+.++..++.. .+.++|+||||||||||+.|++++|+..|.++.+.++ +|.|.+... ..+
T Consensus 87 V~d~~~al~~la~~~~~~-~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~--------~~~ 157 (822)
T PRK11930 87 VKDPLKALQELAAYHRSQ-FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQ--------LNE 157 (822)
T ss_pred ECCHHHHHHHHHHHHHHh-CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhc--------CCC
Confidence 445555666776555443 5778999999999999999999999998877665544 455554221 135
Q ss_pred CCcEEEEEeccccc---ccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhc
Q 021862 98 KFQVAVVEVSSYQM---EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG 174 (306)
Q Consensus 98 ~~~~~V~E~~~~~~---~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~ 174 (306)
+.+++|+|+|+++. +.+...++|+++|||||+.||+|+|+|+|+|+++|.++++. .+.+|+|.||+....+...
T Consensus 158 ~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~ 234 (822)
T PRK11930 158 EHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITK 234 (822)
T ss_pred CCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHh
Confidence 77999999995433 22333478999999999999999999999999999999974 4789999999988776543
Q ss_pred c--cccEEEeccCC---Ceee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021862 175 H--RFNLAWIGAFP---GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246 (306)
Q Consensus 175 ~--~~~~~~~g~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~ 246 (306)
. ..++++||... ++.. ........+.+...+... .++++++|+||++|+++|+ +++..+|+++++|.
T Consensus 235 ~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~ 309 (822)
T PRK11930 235 SNLTLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDF---HFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQ 309 (822)
T ss_pred hhcCCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHH
Confidence 2 23567888532 2211 111112234433322222 3478999999999999999 89999999999999
Q ss_pred HHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (306)
Q Consensus 247 ~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~ 304 (306)
++|++|++++||||++. ..+++.+|||+|||||+|++++|++++ .+++++|+|||.+
T Consensus 310 ~~L~~f~~~~gR~e~~~-~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~e 370 (822)
T PRK11930 310 ERMARLEPVAMRLEVKE-GINNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQ 370 (822)
T ss_pred HHHHhCCCCCCeeEEEE-cCCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHh
Confidence 99999999999999996 467899999999999999999999885 2578999999976
No 33
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=1.8e-42 Score=333.05 Aligned_cols=262 Identities=24% Similarity=0.305 Sum_probs=187.9
Q ss_pred eeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCCh-------------hhhhhhhccccCC
Q 021862 28 VMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-------------PLSEAAFHCIALP 93 (306)
Q Consensus 28 ~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~-------------~~~~~~~~~~~~~ 93 (306)
+|+.++..++..| .+.++|+||||||||||++|++++|+..|.++++.|+.|+ |.+....+... .
T Consensus 94 al~~la~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~-~ 172 (481)
T PRK14022 94 AMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMMA-E 172 (481)
T ss_pred HHHHHHHHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHH-H
Confidence 4444444333222 4678999999999999999999999999988776666443 32111111000 0
Q ss_pred CCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhc--cCCHHHHHHHHHHhhccccCCeeEEEeCC-ChhhH
Q 021862 94 SSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLN 169 (306)
Q Consensus 94 ~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~--~gt~e~~~~~k~~i~~~~~~~~~~V~n~d-d~~~~ 169 (306)
....+.+++|+|+|+++....+. .++|+++|||||++||+++ |+|+|+|+++|.++++ +++.+|+|.| |+...
T Consensus 173 ~~e~g~~~~v~EvsS~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~ 249 (481)
T PRK14022 173 AVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSE 249 (481)
T ss_pred HHHCCCCEEEEEechhHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHH
Confidence 11346789999999876432222 3799999999999999999 8999999999999986 4689999998 55433
Q ss_pred HHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 021862 170 EAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249 (306)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l 249 (306)
........++++||......+... ..+.+...+.. ...++++++|+||++|+++|+ +++..+|++++.|.++|
T Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L 322 (481)
T PRK14022 250 LLEQVTPQEHDFYGIDSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGI 322 (481)
T ss_pred HHHHhcCCCEEEEecCCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHh
Confidence 222222336678875432111110 02333221110 001356799999999999999 89999999999999999
Q ss_pred hcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECCCC
Q 021862 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQA 303 (306)
Q Consensus 250 ~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~~~ 303 (306)
++ .++|||||++. ..+++.+|+| |||||+|++++++.++ ++|+++|+|.|.
T Consensus 323 ~~-~~~~gR~e~i~-~~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~ 376 (481)
T PRK14022 323 AQ-TPVPGRMEVLT-QSNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAG 376 (481)
T ss_pred cc-CCCCCCeEEEE-CCCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCC
Confidence 99 88999999996 3467889999 5999999999999884 568999999765
No 34
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=7e-42 Score=353.38 Aligned_cols=271 Identities=23% Similarity=0.287 Sum_probs=201.7
Q ss_pred CeeeehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-ccC-----------
Q 021862 26 KRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IAL----------- 92 (306)
Q Consensus 26 ~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~----------- 92 (306)
..+|+.++..+...+ .+.++|+||||||||||++||+++|+.+|+++++.|++|+++....+.. .+.
T Consensus 94 ~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~ 173 (958)
T PRK11929 94 RKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILA 173 (958)
T ss_pred HHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHH
Confidence 344455554232222 4678999999999999999999999999999999998887643221100 011
Q ss_pred CCCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHH
Q 021862 93 PSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA 171 (306)
Q Consensus 93 ~~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~ 171 (306)
.....++|++|+|+|+++++..+. .++|+++|||||++||+++|||+|+|+++|.++++.+++++.+|+|.||+....+
T Consensus 174 ~~~~~~~~~~VlE~ss~~l~~~rl~~~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~ 253 (958)
T PRK11929 174 RMRAAGADAVAMEASSHGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARL 253 (958)
T ss_pred HHHHCCCCEEEEEeccchHhhCcccccccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHH
Confidence 011457899999999877643222 2689999999999999999999999999999999987788999999999998887
Q ss_pred Hhccc--ccEEEeccC--CCeee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHH
Q 021862 172 IKGHR--FNLAWIGAF--PGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244 (306)
Q Consensus 172 ~~~~~--~~~~~~g~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~ 244 (306)
.+... ..+.+++.. .++.. ..+.....+.+...+.... +.++++|+||++|+++|+ +++..+|+++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~ 328 (958)
T PRK11929 254 LAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQ---LVTRLLGRFNVSNLLLVA--AALKKLGLPLAQ 328 (958)
T ss_pred HHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCceEE---EEecCccHhhHHHHHHHH--HHHHHcCCCHHH
Confidence 65432 234445432 12211 1111122344433222222 378999999999999999 899999999999
Q ss_pred HHHHhhcCCCCCCeeeEEe--eccCCEEEEEcCCCCcHHHHHHHHhccC------CCcEEEEECCC
Q 021862 245 LNSTIEILRTPPHRMQIVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQ 302 (306)
Q Consensus 245 i~~~l~~~~~~~gR~e~~~--~~~~~~~ii~D~~~~n~~s~~~al~~~~------~~~~i~v~G~~ 302 (306)
|.++|++|++++||||++. ...+++.+|+| |||||+|++++++.++ ++|+++|+|..
T Consensus 329 I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g 393 (958)
T PRK11929 329 IARALAAVSPVPGRMERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCG 393 (958)
T ss_pred HHHHHhcCCCCCCCcEEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCC
Confidence 9999999999999999993 12457788999 5999999999999885 36789999854
No 35
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=1.2e-40 Score=313.45 Aligned_cols=250 Identities=21% Similarity=0.229 Sum_probs=182.4
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC------------Chhhhhhhhc-----------cc-cCC---
Q 021862 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH-----------CI-ALP--- 93 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~------------g~~~~~~~~~-----------~~-~~~--- 93 (306)
++.++|+||||||||||++|++++|++.|++++++++. |.+++...+. .. .++
T Consensus 16 ~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~f 95 (397)
T TIGR01499 16 DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYF 95 (397)
T ss_pred hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 35689999999999999999999999999999877662 3443331110 00 011
Q ss_pred ----------CCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCeeEEEe
Q 021862 94 ----------SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLP 162 (306)
Q Consensus 94 ----------~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~~~V~n 162 (306)
+...++|++|+|+|.++.......++|+++|||||+.||+++|| |+|+|+++|.++++ +++.+|+|
T Consensus 96 e~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k---~~~~~v~~ 172 (397)
T TIGR01499 96 ELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK---EGVPIVTG 172 (397)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeecCCCCcccccccCCCeEEEccccHHHHHHhCccHHHHHHHHhCccC---CCCCEEEc
Confidence 23568999999999755433333478999999999999999999 99999999999987 46789999
Q ss_pred CCChhhHHHHhc----ccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 021862 163 FGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (306)
Q Consensus 163 ~dd~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l 238 (306)
.||+....+.++ .+.++++++.. ..+.. .....+.+..... ....++++++|.||++|+++|+ +++..+
T Consensus 173 ~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~~~~~~l~G~~~~~N~~~Ai--aa~~~l 245 (397)
T TIGR01499 173 PQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSE-TDENYLSFSGANL--FLEPLALSLLGDHQAENAALAL--AALEVL 245 (397)
T ss_pred CCChHHHHHHHHHHHHcCCCEEEeccc--eeecc-cccceEEeecccc--cccccCCCCCCHHHHHHHHHHH--HHHHHH
Confidence 999887665432 23345555532 11110 0112233321111 1112367899999999999999 788888
Q ss_pred CC-----CHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862 239 GV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (306)
Q Consensus 239 g~-----~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~ 304 (306)
|. +++.|.++|+++. .|||||++. .+++.+|.|+ +|||+|++.+++.++ ++++++|+|++.+
T Consensus 246 g~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD~-AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~d 316 (397)
T TIGR01499 246 GKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLDG-AHNPHSAEALAEWFKKRFNGRPIILLFGALAD 316 (397)
T ss_pred HhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEEC-CCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCC
Confidence 75 5899999999997 599999995 3356777775 999999999999884 3578899988654
No 36
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=8.7e-39 Score=324.47 Aligned_cols=259 Identities=19% Similarity=0.228 Sum_probs=192.7
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc--------ccCCCCCCCCcEEEEEecccccc
Q 021862 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--------IALPSSKPKFQVAVVEVSSYQME 112 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~--------~~~~~~~~~~~~~V~E~~~~~~~ 112 (306)
.+.|+|+||||||||||++|++++|++.|+++++.++.|..+....... ......++++|++|+|++++++.
T Consensus 477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil 556 (864)
T TIGR02068 477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL 556 (864)
T ss_pred CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence 4678999999999999999999999999999987666544332211100 00012356789999999998864
Q ss_pred cCC-ceecccEEEEecCChhhhhcc--CCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEEeccCCCee
Q 021862 113 IPN-KYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189 (306)
Q Consensus 113 ~~~-~~~~p~i~viTni~~dH~~~~--gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~ 189 (306)
... ...+|+++|||||+.||++++ +|+|+|+++|+.+++.++++|.+|+|.|||.+..+++.+..++++|+...+..
T Consensus 557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~ 636 (864)
T TIGR02068 557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP 636 (864)
T ss_pred hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence 433 335799999999999999865 69999999999999988889999999999999888877777888888643211
Q ss_pred -----eccccc-----cceEEEecCCeee---EEEeeccCCCC--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 021862 190 -----IDTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254 (306)
Q Consensus 190 -----~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~l~G--~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~ 254 (306)
+..... ...+....++... ....+++.++| .||++|+++|+ ++++.+|++++.|+++|++|++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~ 714 (864)
T TIGR02068 637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA 714 (864)
T ss_pred HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence 110100 0001111111111 11123445555 89999999999 8999999999999999999987
Q ss_pred ----CCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc---CCCcEEEEECCCCC
Q 021862 255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAK 304 (306)
Q Consensus 255 ----~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~---~~~~~i~v~G~~~~ 304 (306)
.|||||++. .+++.+|+|+ +|||+|++.+++.+ +.+|+++|+|+++.
T Consensus 715 ~~~~~pGR~e~~~--~~g~~vI~Dy-AHNP~a~~all~~l~~~~~~r~i~Vig~~gd 768 (864)
T TIGR02068 715 DAAQAPGRFNLFN--LGGAHVLVDY-GHNPAAIEAVGAAIRNWPARRRIGVIGGPGD 768 (864)
T ss_pred cccCCCCceEEEE--eCCcEEEEEc-CCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 899999994 4678899995 99999999777765 34678999998764
No 37
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-38 Score=302.50 Aligned_cols=267 Identities=26% Similarity=0.339 Sum_probs=203.0
Q ss_pred eehHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh-hhhhc-cccCC-----------C
Q 021862 29 MSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS-EAAFH-CIALP-----------S 94 (306)
Q Consensus 29 l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~-~~~~~-~~~~~-----------~ 94 (306)
++..+..+...| ++.++|+||||||||||++++.++++..|.++++.|+.|..++ ..... ..++| .
T Consensus 76 ~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~ 155 (475)
T COG0769 76 LTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDL 155 (475)
T ss_pred HHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHH
Confidence 334443333333 3589999999999999999999999999999988887665553 11110 11222 1
Q ss_pred CCCCCcEEEEEecccccccCCce-ecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHH-
Q 021862 95 SKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI- 172 (306)
Q Consensus 95 ~~~~~~~~V~E~~~~~~~~~~~~-~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~- 172 (306)
.....++++||++++++...+.. +..+++++||++.||+|+|+|+|+|+.+|..+|..++..+..|+|.||+....+.
T Consensus 156 ~d~~~e~~vmEvssh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~ 235 (475)
T COG0769 156 LDRGAEIAVMEVSSHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKE 235 (475)
T ss_pred HHcCCcEEEEEeehhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHH
Confidence 25568999999999988766553 4679999999999999999999999999999998677888999999999984443
Q ss_pred --hcccccEEEeccCCCee------eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHH
Q 021862 173 --KGHRFNLAWIGAFPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244 (306)
Q Consensus 173 --~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~ 244 (306)
.....+.++||...+.. ++....+..+.+...+... .++++++|.||++|+++|+ ++++.+|+|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~---~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~ 310 (475)
T COG0769 236 RLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIG---EYELPLPGLFNVYNALAAV--AAALALGVDLED 310 (475)
T ss_pred HHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCCce---eEeccccchhHHHHHHHHH--HHHHHcCCCHHH
Confidence 33333677888654311 1111122222233222222 3488999999999999999 899999999999
Q ss_pred HHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECCCC
Q 021862 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQA 303 (306)
Q Consensus 245 i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~~~ 303 (306)
|.++|++++|++||||.+. .++..++.|+ +|||+|++++|++++ .+|+++|+|.-+
T Consensus 311 i~~~l~~~~~v~GRmE~v~--~~~~~v~VDy-AHnPd~le~~L~~~~~~~~g~li~VfG~gG 369 (475)
T COG0769 311 ILAGLETLKPVPGRMELVN--IGGKLVIVDY-AHNPDGLEKALRAVRLHAAGRLIVVFGCGG 369 (475)
T ss_pred HHHHHHhcCCCCCcceEec--CCCCeEEEEe-ccChHHHHHHHHHHHhhcCCcEEEEECccC
Confidence 9999999999999999995 4478888885 999999999999885 478999997644
No 38
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=6.4e-37 Score=294.78 Aligned_cols=269 Identities=16% Similarity=0.191 Sum_probs=185.6
Q ss_pred eehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------C--Chhhhhhhhcc--
Q 021862 29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------L--GNPLSEAAFHC-- 89 (306)
Q Consensus 29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~--g~~~~~~~~~~-- 89 (306)
|.|+..+.+.++ .+.++|+|||||||+||++|+.+||+++|++|+++++ . |.+++...+..
T Consensus 58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~ 137 (510)
T PLN02913 58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF 137 (510)
T ss_pred HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence 566666655552 3568999999999999999999999999999987655 2 55555443210
Q ss_pred ---------c-------cCC-----------CCCCCCcEEEEEeccccc-ccCCceec---ccEEEEecCChhhhhccC-
Q 021862 90 ---------I-------ALP-----------SSKPKFQVAVVEVSSYQM-EIPNKYFC---PTVSVVLNLTPDHLERHK- 137 (306)
Q Consensus 90 ---------~-------~~~-----------~~~~~~~~~V~E~~~~~~-~~~~~~~~---p~i~viTni~~dH~~~~g- 137 (306)
. .+. +...++|++|+|+|.|+. |..+. +. |+++|||||+.||++++|
T Consensus 138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNv-i~~~~p~vsVITnIg~DH~~~LG~ 216 (510)
T PLN02913 138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNV-IDSSGLAASVITTIGEEHLAALGG 216 (510)
T ss_pred HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccc-cCCCCCcEEEEccccHHHHhhhcc
Confidence 0 000 335789999999998655 55554 44 599999999999999998
Q ss_pred CHHHHHHHHHHhhccccCCeeEEEeC-CChhhHHHH----hcccccEEEeccC-CCeeecc-c-cccceEEEec-----C
Q 021862 138 TMKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNEAI----KGHRFNLAWIGAF-PGVKIDT-E-AKTASFEVPA-----V 204 (306)
Q Consensus 138 t~e~~~~~k~~i~~~~~~~~~~V~n~-dd~~~~~~~----~~~~~~~~~~g~~-~~~~~~~-~-~~~~~~~~~~-----~ 204 (306)
|+|+|+.+|+++++ +++.+|++. ..+....++ ++.+.+++.++.. .++.... . .....+.+.. .
T Consensus 217 Tle~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (510)
T PLN02913 217 SLESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVE 293 (510)
T ss_pred cHHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccccccceeecccccCCceeEEeccccccc
Confidence 99999999999987 577888875 334444433 3334555555321 1111100 0 0111122210 0
Q ss_pred C---eeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCeeeEEeec------cCCEE
Q 021862 205 G---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRD------IQGVT 270 (306)
Q Consensus 205 ~---~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l-----g~~~~~i~~~l~~~~~~~gR~e~~~~~------~~~~~ 270 (306)
+ .......++++++|.||++|+++|+ +++..+ +++.+.|+++|++++| |||||++... ..+..
T Consensus 294 ~~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~~~~~~~~~~~~~~ 370 (510)
T PLN02913 294 KDDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLTSKEAEVLGLPGAT 370 (510)
T ss_pred cccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEeeccccccccCCCCE
Confidence 0 0001112468899999999999999 677776 6999999999999996 8999998411 12457
Q ss_pred EEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCCC
Q 021862 271 WVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKE 305 (306)
Q Consensus 271 ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~~ 305 (306)
||+|+ +|||+|++.+++.++ ++|+++|+|-++++
T Consensus 371 vIlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DK 408 (510)
T PLN02913 371 VLLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDK 408 (510)
T ss_pred EEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCC
Confidence 89997 799999999998773 45677777765543
No 39
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=8.5e-37 Score=288.68 Aligned_cols=255 Identities=19% Similarity=0.176 Sum_probs=177.0
Q ss_pred eeehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhcc---
Q 021862 28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC--- 89 (306)
Q Consensus 28 ~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~--- 89 (306)
-|.++..+.+.++ .+.++|+||||||||||++|++++|+++|++++++++ .|.+++......
T Consensus 31 ~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~ 110 (416)
T PRK10846 31 GLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFA 110 (416)
T ss_pred ChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHH
Confidence 4666666655553 3568999999999999999999999999999987764 133433221100
Q ss_pred ----------c----------cCCCCCCCCcEEEEEec-ccccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHH
Q 021862 90 ----------I----------ALPSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC 147 (306)
Q Consensus 90 ----------~----------~~~~~~~~~~~~V~E~~-~~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~ 147 (306)
+ ...+..+++|++|+|+| +|+++..+. ++|+++|||||++||+++|| |+|+|+++|+
T Consensus 111 ~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka 189 (416)
T PRK10846 111 EIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKA 189 (416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHHHHH
Confidence 0 00123567899999999 566676665 78999999999999999999 8999999999
Q ss_pred HhhccccCCeeEEEeCCC-hh-hHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHH
Q 021862 148 HLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN 225 (306)
Q Consensus 148 ~i~~~~~~~~~~V~n~dd-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N 225 (306)
.+++. ++.+|+|.+| +. ....+++.+.++..++.. ..+..+. ..+.+..... . ...++++ .||++|
T Consensus 190 ~Iik~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~--~~~~~l~-~~~~~N 257 (416)
T PRK10846 190 GIFRA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--T--LENLPLP-NVPLPN 257 (416)
T ss_pred hhhcC---CCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--c--cccCCcc-chHHHH
Confidence 99873 6778998766 33 223444444454433321 1111010 1122211110 1 1134555 489999
Q ss_pred HHHHHHHHHHHH--cCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc---C-CCcEEEEE
Q 021862 226 AAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---K-GHKCVILL 299 (306)
Q Consensus 226 ~l~A~~~a~~~~--lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~---~-~~~~i~v~ 299 (306)
+++|+ +++.. ++++.+.|.++|++++ +|||||++. .. ..+|+|+ +|||+|++.+++.+ + ++|+++|+
T Consensus 258 ~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~-~~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~Vf 330 (416)
T PRK10846 258 AATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--ES-PRVILDV-AHNPHAAEYLTGRLKALPKNGRVLAVI 330 (416)
T ss_pred HHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--CC-CcEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998 66643 5799999999999998 699999994 33 3578886 99999999985543 3 46899888
Q ss_pred CCC
Q 021862 300 GGQ 302 (306)
Q Consensus 300 G~~ 302 (306)
|-+
T Consensus 331 g~~ 333 (416)
T PRK10846 331 GML 333 (416)
T ss_pred Eee
Confidence 765
No 40
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=7.3e-37 Score=284.36 Aligned_cols=259 Identities=21% Similarity=0.240 Sum_probs=186.8
Q ss_pred eehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhcc----
Q 021862 29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC---- 89 (306)
Q Consensus 29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~---- 89 (306)
|.|+..+.+.++ ++.++|+|+|||||+||++|+++||.++|++++.+++ .|.+++...+..
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 777777766663 4678999999999999999999999999999966554 244554433211
Q ss_pred ---ccC-------------------CCCCCCCcEEEEEecccc-cccCCceecccEEEEecCChhhhhccC-CHHHHHHH
Q 021862 90 ---IAL-------------------PSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145 (306)
Q Consensus 90 ---~~~-------------------~~~~~~~~~~V~E~~~~~-~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~ 145 (306)
... .+...++|++|+|+|.|+ +|.+++ +.|+++|||+|+.||++++| |+|+|+.+
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E 185 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE 185 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence 000 022556999999999765 455654 88999999999999999999 99999999
Q ss_pred HHHhhccccCCeeEEEeC-CChhhHHHHhc----ccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCCh
Q 021862 146 KCHLFSHMVNTKLGLLPF-GNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220 (306)
Q Consensus 146 k~~i~~~~~~~~~~V~n~-dd~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 220 (306)
|+.+++. +..+|+.. +.|.+...+++ ...++..++.+ .....+ +..+.+...+... .+.++++|.
T Consensus 186 KAGI~k~---g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~---~~~lp~l~~ 255 (427)
T COG0285 186 KAGIIKA---GKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD--FQVLEE--GNGFSFQGGGGLL---DLPLPLLGG 255 (427)
T ss_pred hhhhccC---CCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc--hhhccc--cceEEEecCCeee---eeccccccc
Confidence 9999874 55678876 55666665432 23333333221 111111 1233333222222 348898888
Q ss_pred h-HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CC
Q 021862 221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH 293 (306)
Q Consensus 221 ~-~~~N~l~A~~~a~~~~lg--~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~ 293 (306)
| |..|+++|+ +++..++ ++++.|+++|++..| |||||++. .+ +.|+.|. +|||+|+....+.++ .+
T Consensus 256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~--~~-p~i~lDg-AHNp~aa~~La~~l~~~~~~~ 328 (427)
T COG0285 256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVDW-PGRLERLS--EN-PLILLDG-AHNPHAARALAETLKTLFNDR 328 (427)
T ss_pred hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCcC-CceEEEec--CC-CeEEEEC-CCCHHHHHHHHHHHHHHhccC
Confidence 7 999999999 8888887 589999999999997 99999994 44 4566665 999999998887763 33
Q ss_pred c-EEEEECCCCCC
Q 021862 294 K-CVILLGGQAKE 305 (306)
Q Consensus 294 ~-~i~v~G~~~~~ 305 (306)
+ +++|+|-..+|
T Consensus 329 ~~~~~v~g~l~dK 341 (427)
T COG0285 329 PRLTLVFGMLKDK 341 (427)
T ss_pred CceEEEEEeecCC
Confidence 4 88999986654
No 41
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=1.2e-33 Score=269.02 Aligned_cols=235 Identities=21% Similarity=0.226 Sum_probs=169.5
Q ss_pred eeehHHHHHhhCC-----CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhh---
Q 021862 28 VMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAF--- 87 (306)
Q Consensus 28 ~l~~~~~~~~~~~-----~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~--- 87 (306)
-|.++..+.+.++ +++++|+||||||||||++|+.+||+++|++++++++ .|.+++...+
T Consensus 41 ~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~ 120 (530)
T PLN02881 41 QFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRY 120 (530)
T ss_pred ChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHH
Confidence 3556665555442 3568999999999999999999999999999987766 2445544211
Q ss_pred --------cccc-C----C-------------CCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CH
Q 021862 88 --------HCIA-L----P-------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139 (306)
Q Consensus 88 --------~~~~-~----~-------------~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~ 139 (306)
.... . + +...++|++|+|+|. |..|..+...+|++++||||+.||++++| |+
T Consensus 121 f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tl 200 (530)
T PLN02881 121 FWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTL 200 (530)
T ss_pred HHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCH
Confidence 1000 0 1 125678999999995 55666665348999999999999999999 99
Q ss_pred HHHHHHHHHhhccccCCeeEEEeCCChhhHHHHh----cccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeecc
Q 021862 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215 (306)
Q Consensus 140 e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (306)
|+|+.+|++|++ ++..+|+..+++.+..+++ +.+.+....+.. + .+.+ ...++
T Consensus 201 e~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~-------~----~~~~---------~~~~l 257 (530)
T PLN02881 201 GKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPL-------D----SYGL---------SGLKL 257 (530)
T ss_pred HHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEeccc-------c----ccee---------cccCC
Confidence 999999999987 4666777766776665543 223333322210 0 0111 11367
Q ss_pred CCCChhHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhhcCCCCCCeeeEEeecc-------CCEEEEE
Q 021862 216 KVMGRHNYHNAAVAALSVLGLDI---------------GVDVEALNSTIEILRTPPHRMQIVHRDI-------QGVTWVD 273 (306)
Q Consensus 216 ~l~G~~~~~N~l~A~~~a~~~~l---------------g~~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~~~ii~ 273 (306)
++.|.||..|+++|+ +++..+ ...++.+.++|+++.| |||||++. .. +++.++.
T Consensus 258 ~L~G~~Q~~NaalAl--a~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~-~~~~~~~~~~~~~~~L 333 (530)
T PLN02881 258 GLAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVP-DSYINSEDSGDLVFYL 333 (530)
T ss_pred CCCChhHHHhHHHHH--HHHHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEec-cccccccCCCCCeEEE
Confidence 899999999999999 566543 2345689999999996 99999994 21 4567888
Q ss_pred cCCCCcHHHHHHHHhcc
Q 021862 274 DSKATNLEATCTGLMDL 290 (306)
Q Consensus 274 D~~~~n~~s~~~al~~~ 290 (306)
|. ||||+|++.+.+.+
T Consensus 334 DG-AHNp~s~~~l~~wf 349 (530)
T PLN02881 334 DG-AHSPESMEACARWF 349 (530)
T ss_pred EC-CCCHHHHHHHHHHH
Confidence 87 99999999887765
No 42
>PRK14016 cyanophycin synthetase; Provisional
Probab=100.00 E-value=8.3e-34 Score=283.27 Aligned_cols=251 Identities=18% Similarity=0.197 Sum_probs=176.8
Q ss_pred cccccccCc-hHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhh
Q 021862 7 FLLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85 (306)
Q Consensus 7 ~~~~~~~~~-p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~ 85 (306)
.+|+++... |....++..+.+++..+..... +.+.|+|+||||||||||++|++++|+..|++++..++.|.++...
T Consensus 445 ~sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~ 522 (727)
T PRK14016 445 AAPGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGR 522 (727)
T ss_pred CCcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCE
Confidence 456666543 5544455544445544322111 1367899999999999999999999999999998778776554211
Q ss_pred hhc--------cccCCCCCCCCcEEEEEecccccccCCc-eecccEEEEecCChhhhhccC--CHHHHHHHHHHhhcccc
Q 021862 86 AFH--------CIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMV 154 (306)
Q Consensus 86 ~~~--------~~~~~~~~~~~~~~V~E~~~~~~~~~~~-~~~p~i~viTni~~dH~~~~g--t~e~~~~~k~~i~~~~~ 154 (306)
... .......+++.|++|+|++++++..... ..+|+++|||||+.||+++++ |+|+|+.+|..+++.++
T Consensus 523 ~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~ 602 (727)
T PRK14016 523 LIDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVK 602 (727)
T ss_pred EeccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhC
Confidence 100 0000012456799999999988743222 358999999999999999885 99999999999999888
Q ss_pred CCeeEEEeCCChhhHHHHhcccccEEEeccCCCeee-----ccccc-----cceEEEecCCeee---EEEeeccCCCC--
Q 021862 155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG-- 219 (306)
Q Consensus 155 ~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~-----~~~~~~~~~~~~~---~~~~~~~~l~G-- 219 (306)
++|++|+|.||+.+..+.+.+..++++|+..++..+ ..... ...+.+...+.+. .+..+++.++|
T Consensus 603 ~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~ 682 (727)
T PRK14016 603 PDGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKA 682 (727)
T ss_pred CCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcc
Confidence 899999999999999888777778888886542111 11110 0011111111111 11123444476
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCeeeE
Q 021862 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI 261 (306)
Q Consensus 220 ~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~----~~gR~e~ 261 (306)
.||++|+++|+ |+|+.+|++++.|.++|++|++ .||||++
T Consensus 683 ~hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 683 GFNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred hhhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence 79999999999 8999999999999999999996 8999986
No 43
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=100.00 E-value=2.1e-32 Score=231.75 Aligned_cols=180 Identities=23% Similarity=0.322 Sum_probs=132.9
Q ss_pred EecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccccccc--CCceecccEEEE
Q 021862 48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI--PNKYFCPTVSVV 125 (306)
Q Consensus 48 VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~--~~~~~~p~i~vi 125 (306)
||||||||||++||+++|+++|.++++.|+.+........... ....+.|++|+|+|+++... +...++|+++||
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~vi 77 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLN---AREGGADIAVLEVSEGGLGDERLSFLLKPDIAVI 77 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHH---HHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhh---hcccccceeeeeccCCccccceeeeeeehheeee
Confidence 8999999999999999999999999888873332221111000 01347899999999885543 222378999999
Q ss_pred ecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEEeccCCCeeec-----cccccceEE
Q 021862 126 LNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKTASFE 200 (306)
Q Consensus 126 Tni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~ 200 (306)
|||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||.+.........++++||...+..+. .......+.
T Consensus 78 Tni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (188)
T PF08245_consen 78 TNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEGGRFR 157 (188)
T ss_dssp ----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTEEEEE
T ss_pred ceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCCcEEE
Confidence 999999999999999999999999999988999999999998888888777789999987654221 111222332
Q ss_pred Ee-cCCeeeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862 201 VP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (306)
Q Consensus 201 ~~-~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~ 235 (306)
+. ..+...+ ++++++|+||++|+++|+ ++|
T Consensus 158 i~~~~~~~~~---~~~~l~G~hn~~NalaA~--a~a 188 (188)
T PF08245_consen 158 IISYNGEEFE---IELPLPGKHNVENALAAI--AAA 188 (188)
T ss_dssp EEEETTEEEE---EEESSSSHHHHHHHHHHH--HHH
T ss_pred EEEecCceEE---EEecCCCHHHHHHHHHHH--HhC
Confidence 22 2333333 489999999999999999 665
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=224.54 Aligned_cols=241 Identities=23% Similarity=0.270 Sum_probs=169.5
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhccc----------------cC
Q 021862 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI----------------AL 92 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~~----------------~~ 92 (306)
+++.+|||+|||||+||++++++||+++|++++.+++ .|.|+|...+... .+
T Consensus 70 ~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~ 149 (496)
T KOG2525|consen 70 NSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSM 149 (496)
T ss_pred hheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCC
Confidence 4678999999999999999999999999999965554 3555554432110 00
Q ss_pred -------------CCCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCe
Q 021862 93 -------------PSSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (306)
Q Consensus 93 -------------~~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~ 157 (306)
.+..+++|++|+|+|. |..|..+++-+|-++.||+|+.||++++| |+++|+..|+.+|+. +.
T Consensus 150 p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~---gv 226 (496)
T KOG2525|consen 150 PTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKE---GV 226 (496)
T ss_pred CchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhcccccc---CC
Confidence 1346789999999996 56677777668999999999999999998 999999999999874 55
Q ss_pred eEEEeCCChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHH
Q 021862 158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (306)
Q Consensus 158 ~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~ 237 (306)
.++...+++.+..++++...... ....+.......++....+.+.|.||..|+.+|+..+-++.
T Consensus 227 paft~~q~~e~~nvL~~ra~e~~----------------~~L~~v~p~~~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~ 290 (496)
T KOG2525|consen 227 PAFTVPQPPEALNVLKERASELG----------------VPLFVVPPLEAYELSGVNLGLIGTHQWSNASLAVQLASEWL 290 (496)
T ss_pred ceEEcCCcHHHHHHHHHHHHhcC----------------CCceecCCchhhhhcCCcccccccchhhhhHHHHHHHHHHH
Confidence 56665577777777654322110 00111111100011112467889999999999984333333
Q ss_pred c---------------C--CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC-------CC
Q 021862 238 I---------------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-------GH 293 (306)
Q Consensus 238 l---------------g--~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~-------~~ 293 (306)
- + +++..+ .||.++.| |||.|++. .+++++++.|. |||++||++.-+.++ +.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~~~l-~GL~~~~w-PGR~qil~-~~~~~~~llDG-AHt~eSaea~~~w~~~~~~~~~~~ 366 (496)
T KOG2525|consen 291 IQNGRVAEGVLDALQTSGLIPPAFL-SGLASTDW-PGRLQILE-YGRGVTWLLDG-AHTKESAEACAKWFRKAVRGLKKL 366 (496)
T ss_pred HhcCcccccCCCccccccCCCHHHh-cchhhccC-CCceEEEe-cCCCcEEEecC-CCCHHHHHHHHHHHHHHhccCCCc
Confidence 0 1 444444 69999997 99999996 35888899997 999999999877662 22
Q ss_pred c-EEEEECCCCC
Q 021862 294 K-CVILLGGQAK 304 (306)
Q Consensus 294 ~-~i~v~G~~~~ 304 (306)
+ +|++|-=+++
T Consensus 367 ~~~illfn~t~~ 378 (496)
T KOG2525|consen 367 TSLILLFNCTSD 378 (496)
T ss_pred cceEEEEEecCC
Confidence 2 4666644443
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=98.75 E-value=8e-09 Score=76.80 Aligned_cols=47 Identities=28% Similarity=0.397 Sum_probs=38.8
Q ss_pred CCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc----CCCcEEEEECCCC
Q 021862 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQA 303 (306)
Q Consensus 255 ~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~----~~~~~i~v~G~~~ 303 (306)
+|||||++. ..+++.||+| |+|||+|++++++++ +++|+++|+|.|.
T Consensus 1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~ 51 (91)
T PF02875_consen 1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMG 51 (91)
T ss_dssp ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBT
T ss_pred CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEcccc
Confidence 389999997 4678999999 699999999999987 4689999999653
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.55 E-value=0.084 Score=47.36 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=71.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC-------CChhhhh-hhhcccc-------CC----------
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN-------LGNPLSE-AAFHCIA-------LP---------- 93 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~-------~g~~~~~-~~~~~~~-------~~---------- 93 (306)
.+..+|+|||+. ||||...-|..-|.+.|++|++..- -|..+.. ..++.+. ++
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 467799999996 6999999999999999999864221 0111111 0111111 00
Q ss_pred ----------CCCCCCcEEEEEec-ccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEe
Q 021862 94 ----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (306)
Q Consensus 94 ----------~~~~~~~~~V~E~~-~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n 162 (306)
.....+|+.++|.. .||.+..-. --.|+.+++.+. - .=+++-..|..++.- +..+|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~p-----g--~GD~~Q~iK~GimEi---aDi~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIP-----G--AGDDLQGIKAGIMEI---ADIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecC-----C--CCcHHHHHHhhhhhh---hheeeEe
Confidence 11345899999987 466554322 124655555442 1 223445567777663 6789999
Q ss_pred CCChhhH
Q 021862 163 FGNQHLN 169 (306)
Q Consensus 163 ~dd~~~~ 169 (306)
..|..-.
T Consensus 198 KaD~~~A 204 (323)
T COG1703 198 KADRKGA 204 (323)
T ss_pred ccChhhH
Confidence 9885543
No 47
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.64 E-value=1.1 Score=41.22 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=30.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
.+..+|+|+|.. ||||++..+...|.+.|+++++.+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356799999986 799999999999999999886433
No 48
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.60 E-value=0.65 Score=33.39 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.8
Q ss_pred EEEecC--CChhhHHHHHHHHHHhcCCCcccc
Q 021862 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 46 I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+.++|. .||||++..+...|.+.|+++...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~ 33 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 556655 699999999999999999888544
No 49
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=92.12 E-value=0.15 Score=44.46 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=29.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCCcccccC
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
+|+|+|.-||||+..-|..-|+..|+++.+..+
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 589999999999999999999999999865443
No 50
>PRK15453 phosphoribulokinase; Provisional
Probab=90.46 E-value=0.39 Score=43.09 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g 69 (306)
++.++|+|||+. ||||+++.+.++|...+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~ 33 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN 33 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 467899999986 79999999999997654
No 51
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=89.65 E-value=0.38 Score=39.48 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.1
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
+++++|+|.+ ||||...=|-..|++.|+++++.-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 4799999984 8999999999999999999965443
No 52
>COG4240 Predicted kinase [General function prediction only]
Probab=89.22 E-value=0.54 Score=40.74 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHhcCCeeeehHHHHHhhCCCCCcEEEEecC--CChhhHHHHHHHHHHhcC-CCcc
Q 021862 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEAF 73 (306)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g-~~~~ 73 (306)
++...++.+.+++-.++.. .+.-+++|.|. .||||++..|..+|.+.| ++++
T Consensus 29 ~~dl~Lpll~Kiap~~qe~-grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~ 83 (300)
T COG4240 29 AQDLHLPLLAKIAPWAQER-GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTA 83 (300)
T ss_pred HHHHHHHHHHhhhhhhhhc-CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceE
Confidence 4444555666655555455 45669999997 579999999999999998 4554
No 53
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=88.77 E-value=0.53 Score=40.74 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=28.0
Q ss_pred CcEEEEecCC---ChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++.+.||||. |||.+++.|.+.|+++|+++.
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~ 35 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA 35 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence 4689999995 999999999999999999874
No 54
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=88.68 E-value=0.85 Score=40.59 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=32.4
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHHhcCCCccc-ccCCChh
Q 021862 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNP 81 (306)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~-~g~~g~~ 81 (306)
...++|+|| |--||||++..|+..|.+.|.+|.+ -.+...|
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~ 145 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDP 145 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 467899999 6679999999999999999999853 3444333
No 55
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=88.36 E-value=0.59 Score=44.34 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=29.9
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+.++|+|+ |-.|||||+.-|++.|...|++|.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 45899998 88889999999999999999999643
No 56
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=88.20 E-value=0.62 Score=43.94 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.1
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+.++|+|+ |-.|||||+.-|++.|...|++|.+.
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 46799999 88889999999999999999999654
No 57
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=88.17 E-value=0.22 Score=48.26 Aligned_cols=95 Identities=24% Similarity=0.233 Sum_probs=63.7
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCCc-ccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccc---ccccCCc
Q 021862 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QMEIPNK 116 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~-~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~---~~~~~~~ 116 (306)
...++|.|+|++||++++.+.-..+.....++ +..|+.|..-....+..+... ....+.++..|..+- ..+ ...
T Consensus 62 ~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~-~g~~~~~~gT~g~~~~~~~~~-~~~ 139 (475)
T COG0769 62 AGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKK-LGKKTALIGTEGDELSPGILE-PTG 139 (475)
T ss_pred cCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHh-cCCceEEEEEEeeeccCCccc-ccC
Confidence 35669999999999999999999988854554 556776655444433322221 233455666666533 222 222
Q ss_pred eecccEEEEecCChhhhhccC
Q 021862 117 YFCPTVSVVLNLTPDHLERHK 137 (306)
Q Consensus 117 ~~~p~i~viTni~~dH~~~~g 137 (306)
...|+...++|+..|+++..+
T Consensus 140 ~tTP~~~~l~~~~~~~~d~~~ 160 (475)
T COG0769 140 LTTPEALDLQNLLRDLLDRGA 160 (475)
T ss_pred CCCccHHHHHHHHHHHHHcCC
Confidence 368999999999999999887
No 58
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=88.06 E-value=0.62 Score=41.49 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.2
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+ |=.|||||+.-|+..|.+.|++|.+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVll 34 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILL 34 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEE
Confidence 566666 4568999999999999999999964
No 59
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.85 E-value=0.58 Score=39.40 Aligned_cols=27 Identities=37% Similarity=0.679 Sum_probs=23.7
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCC
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~ 71 (306)
+|+|+|- .||||++..|...|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 5888884 68999999999999998876
No 60
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=87.58 E-value=0.69 Score=43.61 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.4
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+.++|+|+ |-.|||||+.-|++.|...|++|.+.
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 46799999 88899999999999999999999654
No 61
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=87.52 E-value=0.7 Score=42.47 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.3
Q ss_pred CCcEEEE----ecCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~V----tGT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
..++|.| .|-.|||+++.+|...|++.|+++++.
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il 85 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV 85 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4679988 899999999999999999999998643
No 62
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=87.27 E-value=1.1 Score=37.90 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=28.6
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+.++|+|++++ ||||++..|+..|.+.|+++.+
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL 51 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 357889988554 7999999999999999999854
No 63
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=86.92 E-value=0.66 Score=38.39 Aligned_cols=25 Identities=40% Similarity=0.727 Sum_probs=19.8
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.|+||||. ||||++..|+ ..|+++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 69999996 6999998877 5567663
No 64
>COG2403 Predicted GTPase [General function prediction only]
Probab=85.77 E-value=0.82 Score=42.32 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=28.8
Q ss_pred CCcEEEEecCC---ChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~ 73 (306)
..|+|+||||. |||++++++.++|++.|+++.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence 46799999984 999999999999999999974
No 65
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=85.74 E-value=0.99 Score=40.20 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=25.6
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+ |-.|||||+--|++.|.+.|++|.+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLl 34 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMV 34 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEE
Confidence 456666 4557999999999999999999864
No 66
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=85.41 E-value=1.2 Score=40.22 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
...+|+|+|.+ ||||++++|..+|...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 45699999987 7999999999999853
No 67
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=85.36 E-value=1.2 Score=39.56 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCC
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~ 71 (306)
+...+|+|+|+. |||||++.+..+|+..+..
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 345699999995 8999999999999998876
No 68
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=85.33 E-value=1.1 Score=39.06 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=28.4
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCCcccc
Q 021862 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+++|.|+| -.||||+..-|...|++.|+++++.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 36899999 7899999998899999999998654
No 69
>PHA02518 ParA-like protein; Provisional
Probab=85.03 E-value=1.1 Score=37.76 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=24.8
Q ss_pred EEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+|+|+ |-.||||++..|+..|...|++|.+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vll 34 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLL 34 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 45554 6678999999999999999999864
No 70
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=84.98 E-value=1.1 Score=37.07 Aligned_cols=14 Identities=36% Similarity=0.588 Sum_probs=12.3
Q ss_pred hcCCCCCCeeeEEe
Q 021862 250 EILRTPPHRMQIVH 263 (306)
Q Consensus 250 ~~~~~~~gR~e~~~ 263 (306)
++++|++||++++=
T Consensus 61 ~k~RPL~gRiNiVL 74 (190)
T KOG1324|consen 61 EKFRPLPGRINVVL 74 (190)
T ss_pred cccCCCCCceEEEE
Confidence 56899999999984
No 71
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=84.77 E-value=0.93 Score=39.11 Aligned_cols=38 Identities=32% Similarity=0.512 Sum_probs=29.8
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCCccc-ccCCChh
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNP 81 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~-~g~~g~~ 81 (306)
++|.|| |-.|||||++-|...|...|.++.+ -..+|.-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLR 44 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLR 44 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCch
Confidence 467777 7789999999999999999999853 3344543
No 72
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=84.65 E-value=1.2 Score=41.91 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=28.4
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+.++|+|+ |-.|||||+.-|++.|...|++|.+
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLl 138 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLA 138 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 45788887 6678999999999999999999864
No 73
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.51 E-value=1.2 Score=40.76 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=29.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+..+|.+.|.| |||||..=|++.|++.|++|.+..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA 174 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA 174 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEe
Confidence 46688888888 599999999999999999986543
No 74
>PRK10037 cell division protein; Provisional
Probab=84.25 E-value=1.3 Score=38.92 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=26.5
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
++|+|. |=.||||++.-|+..|.+.|++|.+.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 466666 55689999999999999999998653
No 75
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.15 E-value=1.3 Score=38.41 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=26.5
Q ss_pred cEEEEec---CCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtG---T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|++ -.||||++.-|+..|.+.|++|.+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vll 35 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLA 35 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 5677765 669999999999999999999864
No 76
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=84.01 E-value=1.5 Score=37.34 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHHh-cCCCccc
Q 021862 41 RSIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~ll~~iL~~-~g~~~~~ 74 (306)
...++|+|+ |-.||||++..|++.|.. .|++|.+
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLl 70 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLL 70 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 357899999 577999999999999985 6998854
No 77
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.86 E-value=1.2 Score=39.78 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=23.3
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
+|+|||.. ||||++.-+.++|...|.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v 30 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP 30 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence 58999985 79999999999998776543
No 78
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=83.56 E-value=0.9 Score=40.15 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.4
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-|-.||||++.-|++.|.+.|++|.+
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVll 34 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMI 34 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEE
Confidence 57789999999999999999999864
No 79
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.05 E-value=1.8 Score=35.45 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=27.5
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+++|+|+| -.||||...-|...|...|+++++
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~ 34 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAV 34 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 36899999 579999999999999999998854
No 80
>PRK05439 pantothenate kinase; Provisional
Probab=83.02 E-value=1.7 Score=39.59 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc--CCCcccc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL--GIEAFVG 75 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~--g~~~~~~ 75 (306)
++..+|+|+|+. ||||++..|..+|... +.++.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi 122 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELV 122 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEE
Confidence 345699999986 6999999999999864 4444333
No 81
>PRK00784 cobyric acid synthase; Provisional
Probab=82.58 E-value=1.5 Score=42.75 Aligned_cols=30 Identities=40% Similarity=0.479 Sum_probs=26.4
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.|.|||| .|||+++..|.+.|++.|++++
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~ 35 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVA 35 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe
Confidence 56888888 8999999999999999998764
No 82
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=82.57 E-value=1.7 Score=38.94 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=27.1
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+++|+|+| ..||||.+.-|...|++.| ++++
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~ 33 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGT 33 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEE
Confidence 46899999 8899999999999999999 6753
No 83
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=82.50 E-value=1.1 Score=38.12 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=21.6
Q ss_pred EEEecCCChhhHHHHHHHHHHhcCCCccccc
Q 021862 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 46 I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
|+.|| .|||||..=|++-+...|.++.+.+
T Consensus 7 vGptG-vGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 7 VGPTG-VGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EESTT-SSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred ECCCC-CchHhHHHHHHHHHhhccccceeec
Confidence 44444 3899999999999998899986544
No 84
>PRK14974 cell division protein FtsY; Provisional
Probab=82.31 E-value=1.9 Score=39.78 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=29.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+..+|.++|.+ |||||..-+...|.+.|.++.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 35689999976 699999999999999998886543
No 85
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=81.97 E-value=2.7 Score=37.22 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=60.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccCC-Chhhhhhhh--ccccC----------------C------
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNL-GNPLSEAAF--HCIAL----------------P------ 93 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~~-g~~~~~~~~--~~~~~----------------~------ 93 (306)
.+..+|+|||+. ||||...-|...|.+.|.++++..-. .+|++...+ +++++ +
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 466799999996 69999999999999999998642221 112221110 00000 0
Q ss_pred ----------CCCCCCcEEEEEec-ccccccCCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEE
Q 021862 94 ----------SSKPKFQVAVVEVS-SYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (306)
Q Consensus 94 ----------~~~~~~~~~V~E~~-~~~~~~~~~-~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~ 161 (306)
.....+|+.++|.- .||-+..-. ....-+.|++.=.-|-+-. .|+.+++- ...+|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~---------~KaGimEi---aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQA---------IKAGIMEI---ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCT---------B-TTHHHH----SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHH---------Hhhhhhhh---ccEEEE
Confidence 11345899999976 466543211 1333455555555554443 35555542 567899
Q ss_pred eCCChh
Q 021862 162 PFGNQH 167 (306)
Q Consensus 162 n~dd~~ 167 (306)
|..|..
T Consensus 175 NKaD~~ 180 (266)
T PF03308_consen 175 NKADRP 180 (266)
T ss_dssp E--SHH
T ss_pred eCCChH
Confidence 987633
No 86
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=81.97 E-value=1.3 Score=36.71 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+...-|=.||||++..|+..|.+.|++|.+
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vll 32 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLL 32 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccc
Confidence 344557789999999999999999999853
No 87
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=81.69 E-value=1.4 Score=38.70 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=24.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++++.|-.||||++.-|.+.|...|.+|.
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vl 34 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVL 34 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 44556667899999999999999999984
No 88
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=81.55 E-value=1.9 Score=34.41 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
|+|+|.|- .||||.++.|-.-|.+.|++++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 47788886 5999999999999999999985
No 89
>PRK06696 uridine kinase; Validated
Probab=81.55 E-value=2.9 Score=35.97 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+..+|+|+|- .||||.+..|.+.|...|.++..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45679999985 68999999999999988876643
No 90
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=80.92 E-value=1.8 Score=37.45 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=31.1
Q ss_pred eeehHHHHHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHHhcCCC
Q 021862 28 VMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~ 71 (306)
++.++....... .+..+|+|+|-+ ||||.+..|...|...+-.
T Consensus 19 l~~~~~~~~~~~-~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 19 LLRRLAALQAEP-QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 344444444333 467799999987 5999999999999986543
No 91
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=80.33 E-value=2.3 Score=38.10 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=28.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+.++|.++|.+ |||||+.-|+..|...|+++.+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45688888865 799999999999999999886544
No 92
>PRK07667 uridine kinase; Provisional
Probab=80.19 E-value=2.6 Score=35.42 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=27.1
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+..+|+|+|- .||||.+..|.+.|.+.|.++.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~ 49 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFH 49 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 4479999996 5899999999999998877653
No 93
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=80.03 E-value=1.7 Score=35.23 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
-.|-|.||||. ||||++..|+..+.-
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence 34679999996 699999999866543
No 94
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=79.84 E-value=2.1 Score=40.83 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=28.7
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+++|+|+| -.||||...-|-..|++.|++|++
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVav 34 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVST 34 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 46899999 779999999999999999999865
No 95
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=79.78 E-value=1.8 Score=36.98 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=24.8
Q ss_pred EEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+|+|+ |-.||||++.-|++.|.+.|+++.+
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLl 33 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQ 33 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEE
Confidence 45555 5568999999999999999999854
No 96
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=79.55 E-value=2.2 Score=36.81 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHh
Q 021862 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+|+|+|.+ ||||++..|...|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 47888876 799999999999985
No 97
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=79.55 E-value=1.6 Score=38.63 Aligned_cols=29 Identities=34% Similarity=0.357 Sum_probs=24.2
Q ss_pred EEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 46 I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
|+|+ |-.||||++.-|++.|.+.|+++.+
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvll 33 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQ 33 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4444 5678999999999999999999864
No 98
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=79.36 E-value=2.2 Score=35.48 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=23.6
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+|+|+|. .||||.+..|...|...|.++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~ 31 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPV 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 4778886 5899999999999998776653
No 99
>CHL00175 minD septum-site determining protein; Validated
Probab=79.28 E-value=2.6 Score=37.54 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.8
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
..++|+|++. .||||++.-|++.|.+.|++|.+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vll 49 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVAL 49 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 3468888765 58999999999999999999864
No 100
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=79.27 E-value=2.6 Score=38.63 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=28.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+..+|++.|.| |||||+.-|+..|...|.++.+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35678887765 699999999999999998887554
No 101
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=79.07 E-value=2.5 Score=36.69 Aligned_cols=30 Identities=30% Similarity=0.237 Sum_probs=25.7
Q ss_pred EEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.|-|||| .|||+++..|.+.|++.|++++.
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~ 36 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAG 36 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4667766 79999999999999999998853
No 102
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=79.04 E-value=2.2 Score=35.89 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=26.1
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.|-|||| .|||+++..|.+.|++.|.+++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~ 33 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVG 33 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 35778888 5999999999999999999985
No 103
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=78.91 E-value=8 Score=28.52 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=34.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccc
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~ 109 (306)
+.+--|--||||++..+...|.+.|.++.+.-. ...+|+.|+.++.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~------------------d~~~d~viiD~p~~ 50 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDL------------------DPQYDYIIIDTPPS 50 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC------------------CCCCCEEEEeCcCC
Confidence 344567889999999999999998887743321 11278899998854
No 104
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=78.80 E-value=2.6 Score=40.60 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=26.8
Q ss_pred CcEEEEecCC---ChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++.|.||||. |||+++..|...|++.|+++.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~ 36 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQ 36 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcc
Confidence 4678888875 599999999999999999874
No 105
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=78.56 E-value=1.7 Score=38.42 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.0
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-|-.|||||+.-|+..|.+.|++|.+
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLl 33 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQ 33 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEE
Confidence 47789999999999999999999863
No 106
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=78.46 E-value=2.3 Score=34.54 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=25.0
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCcccc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+|+|+|. .||||+...|...|++.|+++++.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3566664 589999999999999999998644
No 107
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=77.63 E-value=3.2 Score=34.48 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
..++++|+| -.||||...-|-..|...|++++..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 567999999 4689999999999999989888543
No 108
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=77.56 E-value=2 Score=38.09 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=25.3
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+ |-.|||||+.-|++.|...|++|.+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLl 35 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQ 35 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 345554 6678999999999999999999864
No 109
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=77.55 E-value=4 Score=32.15 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=32.3
Q ss_pred EEecC-CChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccc
Q 021862 47 AVTGT-NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (306)
Q Consensus 47 ~VtGT-~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~ 109 (306)
-|||+ .|||+++.-+...|++.|.+++..- | -..+|+.++|-..+
T Consensus 4 ~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k----p--------------~~~~d~vliEGaGg 49 (134)
T cd03109 4 FGTGTDIGKTVATAILARALKEKGYRVAPLK----P--------------VQTYDFVLVEGAGG 49 (134)
T ss_pred EeCCCCcCHHHHHHHHHHHHHHCCCeEEEEe----c--------------CCCCCEEEEECCCc
Confidence 34443 6999999999999999999884331 1 11268899998743
No 110
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=77.19 E-value=1.9 Score=38.48 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.7
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|. |=.|||||+.-|++.|.+.|++|.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLl 34 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLV 34 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEE
Confidence 456665 5568999999999999999999864
No 111
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=77.14 E-value=2 Score=38.74 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.1
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-|-.|||||+.-|++.|...|++|.+
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLl 33 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQ 33 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 46778999999999999999999854
No 112
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=77.00 E-value=3.4 Score=38.09 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=29.1
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHHHhcCCCcccc
Q 021862 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
++.++|+|+| ..||||++.-|+..|.+.|++|.+.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4567888876 6789999999999999999998643
No 113
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=76.55 E-value=3.1 Score=36.27 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=25.8
Q ss_pred cEEEEec---CCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtG---T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|++ -.||||++.-++..|...|+++.+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vll 35 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVL 35 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEE
Confidence 4666765 568999999999999999999864
No 114
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=76.53 E-value=6.2 Score=32.69 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=30.3
Q ss_pred HHHHHhhCCCCCcEEEEec--CCChhhHHHHHHHHHHhcCCCc
Q 021862 32 LDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 32 ~~~~~~~~~~~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+...+.. +...+|.++| ..||||.+..|...|...|..+
T Consensus 8 ~~~~~~~~-~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~ 49 (184)
T TIGR00455 8 DERQALNG-HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRV 49 (184)
T ss_pred HHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 33333344 4667999999 8899999999999998777543
No 115
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=76.41 E-value=2.7 Score=34.32 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.1
Q ss_pred EEEecCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 46 I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
..-.|-.||||++..|...|.+.|+++.+.
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344577899999999999999999998643
No 116
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=76.30 E-value=2.4 Score=40.50 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=52.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceec
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC 119 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~ 119 (306)
+-.=|.|+|.. ||||.+..++..+.++|.-+ -++.+|=.... .++-.++.=+|.++....+.-..++
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~~~GkiV---KTmEsPRDl~v--------~~eITQYs~l~g~me~t~DiLLLvR 330 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYASQGKIV---KTMESPRDLQV--------SPEITQYSPLEGDMEKTADILLLVR 330 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHHHhcCcEE---eeccCcccccC--------ChhhhhcccccCchhhhccEEEEec
Confidence 45568889875 79999999999999999866 55555433221 2334567778888665544444578
Q ss_pred ccEEEEecC
Q 021862 120 PTVSVVLNL 128 (306)
Q Consensus 120 p~i~viTni 128 (306)
||+.|.--+
T Consensus 331 PDYTIyDEm 339 (604)
T COG1855 331 PDYTIYDEM 339 (604)
T ss_pred CCceehhhh
Confidence 999886544
No 117
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=76.20 E-value=3.4 Score=33.96 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.3
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
-.|+|||-. ||||.+.-+...|++.|+++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 469999975 79999999999999999988
No 118
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.91 E-value=5.5 Score=37.59 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=22.9
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHh----cCCCccccc
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNH----LGIEAFVGG 76 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~----~g~~~~~~g 76 (306)
.+|.+.|.+ |||||+.-++..+.. .|.++.+.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 455555543 799999999988874 467776444
No 119
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=75.35 E-value=2.4 Score=38.40 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-|-.|||||+.-|++.|.+.|++|.+
T Consensus 8 KGGvGKTT~a~nLA~~La~~g~rVLl 33 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMAEMGKRVLQ 33 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999999854
No 120
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=75.26 E-value=2.4 Score=37.70 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=24.9
Q ss_pred EEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+|+|. |=.||||++.-|+..|.+.|++|.+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMI 33 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45555 5678999999999999999999864
No 121
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.25 E-value=4.7 Score=41.37 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=32.9
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc-ccCCChh
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV-GGNLGNP 81 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~-~g~~g~~ 81 (306)
...++|+||++. ||||++.-|+..|...|.+|.+ -++...|
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~ 573 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRG 573 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 456899999976 9999999999999999999864 3444333
No 122
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=74.99 E-value=2.7 Score=34.32 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.1
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-|-.||||++.-|+..|.+.|+++.+
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vll 33 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGL 33 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEE
Confidence 46679999999999999999999864
No 123
>PRK03846 adenylylsulfate kinase; Provisional
Probab=74.86 E-value=6.8 Score=32.96 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=30.9
Q ss_pred ehHHHHHhhCCCCCcEEEEec--CCChhhHHHHHHHHHHhcCCCc
Q 021862 30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 30 ~~~~~~~~~~~~~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+..+...+.- ++..+|.++| -.||||.+..|...|...|..+
T Consensus 12 ~~~~~~~~~~-~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 12 TKAQREQLHG-HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred CHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 3344443333 5778999999 7899999999999988776543
No 124
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=74.85 E-value=2.7 Score=36.63 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.7
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+ |-.||||++..|+..|...|++|.+
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vll 35 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVAL 35 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 466666 5568999999999999999999864
No 125
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=74.73 E-value=4.2 Score=37.15 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=28.2
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+.++|+|+|.+ ||||++.-|+..|.+.|.++.+
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlL 127 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLL 127 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEE
Confidence 356788888764 7999999999999999988753
No 126
>PRK13236 nitrogenase reductase; Reviewed
Probab=73.99 E-value=2.8 Score=37.92 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCcEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++++|+|. |-.||||++.-|++.|.+.|++|.+
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLl 39 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILI 39 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEE
Confidence 45566664 4578999999999999999999964
No 127
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.89 E-value=4.1 Score=38.70 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=28.3
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCcccccC
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
..+|...|- .|||||+.=|+.-|+..|+++.+.+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa 136 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA 136 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec
Confidence 446666663 58999999999999999999976654
No 128
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=73.68 E-value=4.4 Score=37.02 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=29.6
Q ss_pred CCcEEEEe----cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVT----GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~Vt----GT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
..|+|.|- |-.|||-++.+|...|++.|+++++.
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il 64 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVL 64 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEE
Confidence 56788884 88999999999999999999998643
No 129
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=73.26 E-value=3.4 Score=35.59 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=22.6
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~ 68 (306)
+..+|+|+|- .||||.+..|...|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 3469999995 68999999999999854
No 130
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=72.95 E-value=4.2 Score=34.84 Aligned_cols=28 Identities=39% Similarity=0.468 Sum_probs=23.3
Q ss_pred EEEecC---CChhhHHHHHHHHHHhcCCCcc
Q 021862 46 LAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 46 I~VtGT---~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
|.|||| .|||+++..|.+.|++.|++++
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~ 32 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVA 32 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceE
Confidence 345554 6999999999999999999874
No 131
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=72.77 E-value=8 Score=36.79 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.5
Q ss_pred EEEEecC---CChhhHHHHHHHHHHhcCCCc
Q 021862 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 45 ~I~VtGT---~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.|.|+|| .||||++.-|-..|++.|++|
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcc
Confidence 3566666 599999999999999998776
No 132
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.55 E-value=6 Score=37.12 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+..+|-+.|-+ |||||+.=++.-++..|+++.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~L 134 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVAL 134 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeE
Confidence 34466666653 7999999999999999999864
No 133
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=72.37 E-value=3.2 Score=36.01 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=24.8
Q ss_pred EEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+|+|+ |-.||||++.-|+..|.+.|++|.+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vll 34 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLA 34 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 44444 6689999999999999999998864
No 134
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=71.43 E-value=3.4 Score=37.38 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCcEEEEe--cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
++++|+|. |-.|||||+.-|+..|.+.|++|.+.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45566665 45679999999999999999999653
No 135
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=71.35 E-value=5.6 Score=31.69 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.7
Q ss_pred cEEEEec---CCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtG---T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+| .-||||++.-++..|.+.|.+|.+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vll 34 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLL 34 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEE
Confidence 3566666 669999999999999999988754
No 136
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=70.88 E-value=4.4 Score=31.20 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.5
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
-|..||||++..+.+.|.+.|.++.+..
T Consensus 7 kgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3678999999999999999998886444
No 137
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=70.86 E-value=4.3 Score=35.60 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=24.6
Q ss_pred EEEEecCCChhhHHHHHHHHHH-hcCCCccc
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLN-HLGIEAFV 74 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~-~~g~~~~~ 74 (306)
+...-|-.|||||+--|+..|. ..|++|.+
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLl 37 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLL 37 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEE
Confidence 4555688899999999999999 66688864
No 138
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=70.72 E-value=4.6 Score=38.91 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.8
Q ss_pred ecC-CChhhHHHHHHHHHHhcCCCcc
Q 021862 49 TGT-NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 49 tGT-~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
|+| .|||+++..|...|++.|+++.
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~ 32 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQ 32 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCcee
Confidence 444 7999999999999999999874
No 139
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=70.04 E-value=5.1 Score=30.36 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=17.1
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL 65 (306)
+|.|+|. .||||++..|++-|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 4677776 48999999998877
No 140
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=69.95 E-value=7.2 Score=31.80 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.1
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.+|-+||. .||||.+..|.+-|.+.|.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~ 34 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVY 34 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 47888886 4799999999999999998873
No 141
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=69.80 E-value=5.6 Score=34.74 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=23.6
Q ss_pred EEEEec--CCChhhHHHH-HHHHHHhcCCCcc
Q 021862 45 ILAVTG--TNGKSTVVTF-VGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtG--T~GKTTt~~l-l~~iL~~~g~~~~ 73 (306)
.|+||| -.||||.+++ +..++...|+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VL 33 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVL 33 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 477875 6899999999 7888888778874
No 142
>PRK00889 adenylylsulfate kinase; Provisional
Probab=69.66 E-value=7.4 Score=31.88 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.2
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+..+|.++|. .||||++..|...|...|.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~ 36 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVE 36 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4568899985 5899999999999988776553
No 143
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=69.59 E-value=3.9 Score=36.01 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=23.1
Q ss_pred EEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+|+|. |-.|||||+.=++-.|...|++|++
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~ 34 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL 34 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45554 6679999999999999999999963
No 144
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=69.58 E-value=2.1 Score=37.84 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=24.1
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|. |-.|||||+.-|++.|.+.| +|.+
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLl 34 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLV 34 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEE
Confidence 345554 66789999999999999999 8853
No 145
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=69.41 E-value=6.8 Score=34.89 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=28.1
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
..++|+||.. -||||++..|+..|.+.|+++++
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVll 91 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLL 91 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 4568888754 58999999999999999999963
No 146
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=68.99 E-value=6.5 Score=36.18 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=29.9
Q ss_pred CCCcEEEE----ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~V----tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-+.|+|.| +|-.|||-++.+|...|++.|+++++
T Consensus 33 ~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~I 70 (326)
T PF02606_consen 33 LPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAI 70 (326)
T ss_pred CCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEE
Confidence 36788887 68999999999999999999999864
No 147
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.89 E-value=7.5 Score=37.15 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=28.9
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCcccccC
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
..+|.++|- .|||||+.-|+..|+..|+++.+.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 468888885 47999999999999999999876543
No 148
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=68.85 E-value=7.2 Score=32.45 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=26.6
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.+.|+|.|.- ||||.+.+|++-|...|+++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3578999874 899999999999999888774
No 149
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=67.88 E-value=6.6 Score=36.70 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=29.9
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+.++|+|+|. .||||...-+-..|++.|+++++.-
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4679999994 6899999999999999999986543
No 150
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=67.85 E-value=4.7 Score=34.31 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~ 68 (306)
+.-+|||+|. .||||.+..++.+|..+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 3358999994 69999999999999864
No 151
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=67.55 E-value=5.4 Score=34.01 Aligned_cols=27 Identities=37% Similarity=0.663 Sum_probs=20.4
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.+|++||. .||||++.++++ .|+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~vi 30 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPVI 30 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeEE
Confidence 358999997 689999887655 566653
No 152
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=67.25 E-value=4.6 Score=35.84 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=25.4
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHh-cCCCcccc
Q 021862 44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFVG 75 (306)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~ll~~iL~~-~g~~~~~~ 75 (306)
++|+|+ |-.|||||+.-|+..|.+ .|++|.+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 456665 556799999999999997 69998753
No 153
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=67.03 E-value=5.9 Score=29.74 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.7
Q ss_pred ecCCChhhHHHHHHHHHHhc-CCCcccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHL-GIEAFVG 75 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~-g~~~~~~ 75 (306)
-|--||||++.-|...|.+. |+++.+.
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 46678999999999999998 9888544
No 154
>PRK11670 antiporter inner membrane protein; Provisional
Probab=66.94 E-value=5.1 Score=37.55 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-.++|+|+ |-.|||||+.-|+..|.+.|++|.+
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlL 141 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGI 141 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 34788997 5568999999999999999999964
No 155
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=66.76 E-value=4.9 Score=35.89 Aligned_cols=31 Identities=32% Similarity=0.277 Sum_probs=27.2
Q ss_pred CcEEEEe---cCCChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
..+|+|+ |-.||||++..|+..|...|.+++
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vg 80 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVG 80 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEE
Confidence 3478886 788999999999999999999985
No 156
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=66.47 E-value=7.2 Score=35.38 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCCcccccC---------CChhhhhhh-------hccccCCCCCCCCcEE
Q 021862 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN---------LGNPLSEAA-------FHCIALPSSKPKFQVA 102 (306)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~~g~---------~g~~~~~~~-------~~~~~~~~~~~~~~~~ 102 (306)
+.++|++-|| -||-||+..|...|++.|+++...++ .|.++..-. .+.+......++ |+.
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~~~-d~i 189 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAEEH-DWI 189 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCCC--SEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCcCC-CEE
Confidence 6789999998 59999999999999999999854443 222221100 000000011233 899
Q ss_pred EEEeccccccc------CCc--eecccEEEEec-CChhhhhcc-----CCHHHHHHHHHHhhc
Q 021862 103 VVEVSSYQMEI------PNK--YFCPTVSVVLN-LTPDHLERH-----KTMKNYALTKCHLFS 151 (306)
Q Consensus 103 V~E~~~~~~~~------~~~--~~~p~i~viTn-i~~dH~~~~-----gt~e~~~~~k~~i~~ 151 (306)
++|--..=.+. +.. -.+||..|+-- -++-|++-| +++++..+.-..+..
T Consensus 190 vVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~ 252 (301)
T PF07755_consen 190 VVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAG 252 (301)
T ss_dssp EEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCC
T ss_pred EEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhc
Confidence 99965221110 111 14788766654 666666654 477777777666644
No 157
>PLN02796 D-glycerate 3-kinase
Probab=66.34 E-value=7.1 Score=36.17 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.-+|+|+|.+ ||||++..|..+|...|.+++
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g 132 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAA 132 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCcee
Confidence 34589999975 799999999999988776654
No 158
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=66.32 E-value=4.2 Score=34.40 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCCcEEEEecCCChhh--HHHHHHHHHHhcCCCc
Q 021862 41 RSIKILAVTGTNGKST--VVTFVGQMLNHLGIEA 72 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTT--t~~ll~~iL~~~g~~~ 72 (306)
.+-++|+||||.|-+| |+.....|+++...+.
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~a 36 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHA 36 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCccH
Confidence 4678999999998654 4556678888776654
No 159
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=66.04 E-value=71 Score=26.00 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=78.5
Q ss_pred CChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEeccc-ccccCCceecccEEEEecCCh
Q 021862 52 NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTP 130 (306)
Q Consensus 52 ~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~-~~~~~~~~~~p~i~viTni~~ 130 (306)
-|=-|+..+|...+...|+.+...-++|.. .....-++-+-++.. ...... .-++|+.+..+-
T Consensus 3 qGv~t~g~ila~a~~~~G~~v~~~~~ygs~-------------~rGG~~~~~vris~~~~~~~~~-~~~~Dilv~l~~-- 66 (173)
T PF01558_consen 3 QGVVTAGKILARAAAREGYYVQSTPEYGSE-------------IRGGPVVSHVRISDEPIIPSPP-VGEADILVALDP-- 66 (173)
T ss_dssp STHHHHHHHHHHHHHHTTSEEEEEEEEESS-------------SSSSCEEEEEEEESS--SSSS--TSSESEEEESSH--
T ss_pred cHHHHHHHHHHHHHHHcCCCEEEEeCCChh-------------hcCCeEEEEEEEecCcCccCcc-cCCCCEEEEcCH--
Confidence 355688899999999999887543333321 123334455555543 222222 146788888732
Q ss_pred hhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEE
Q 021862 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210 (306)
Q Consensus 131 dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (306)
+.+. ..++.++++|++|+|.+............... .... ..+.++..+
T Consensus 67 ---------~~~~----~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~~-----------~~~~--~v~~ip~~~----- 115 (173)
T PF01558_consen 67 ---------EALE----RHLKGLKPGGVVIINSSLVKPEPEEKDKPAYF-----------PRIE--RVIGIPATE----- 115 (173)
T ss_dssp ---------HHHH----HCGTTCETTEEEEEETTT-CHHHHHHHCCCHH-----------HHHC--EEEEE-HHH-----
T ss_pred ---------HHHH----HHhcCcCcCeEEEEECCCCCcHhHhhcccccc-----------ccce--eEEeccHHH-----
Confidence 2221 45566788999999986433322221111000 0000 001111111
Q ss_pred EeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 021862 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252 (306)
Q Consensus 211 ~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~ 252 (306)
......+..-..|.++.- +++..++++.+.+.+++++.
T Consensus 116 --ia~~~~~~~~~~N~~~lG--a~~~~~~l~~e~~~~~i~~~ 153 (173)
T PF01558_consen 116 --IAKELGGNPRFANMVMLG--ALAKLLGLPLESLEEAIKER 153 (173)
T ss_dssp --HHHHTTS-GGGHHHHHHH--HHHHHHTS-HHHHHHHHHHH
T ss_pred --HHHhhhcchhhHHHHHHH--HHHHHcCCCHHHHHHHHHHH
Confidence 112233435667777655 67888889999999999873
No 160
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=65.16 E-value=8.9 Score=31.63 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=25.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCcccc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+|+|.|. .||||.+..|+..|...|+++...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5677775 589999999999999999887443
No 161
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=64.87 E-value=5.6 Score=38.63 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.1
Q ss_pred EEecC---CChhhHHHHHHHHHHhcCCCcc
Q 021862 47 AVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 47 ~VtGT---~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.|||| .|||.++..|-..|++.|++++
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~ 31 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRGYRVA 31 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 34444 7999999999999999999985
No 162
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=64.75 E-value=6.8 Score=32.23 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.1
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHh
Q 021862 43 IKILAVTG--TNGKSTVVTFVGQMLNH 67 (306)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~ll~~iL~~ 67 (306)
.|+|+|+| |.||||.++-|+.++..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 47899998 78999999999999875
No 163
>PRK11519 tyrosine kinase; Provisional
Probab=64.63 E-value=11 Score=38.63 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=32.5
Q ss_pred CCCcEEEEec---CCChhhHHHHHHHHHHhcCCCcccc-cCCChh
Q 021862 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG-GNLGNP 81 (306)
Q Consensus 41 ~~~~~I~VtG---T~GKTTt~~ll~~iL~~~g~~~~~~-g~~g~~ 81 (306)
...++|.||+ --||||++.-|+..|...|.+|.+. .+...|
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~ 568 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKG 568 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 3567999998 4599999999999999999998643 444434
No 164
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=64.24 E-value=6.1 Score=34.39 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.3
Q ss_pred cCCChhhHHHHHHHHHHhcCCCccc-ccCCChhhhhh
Q 021862 50 GTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNPLSEA 85 (306)
Q Consensus 50 GT~GKTTt~~ll~~iL~~~g~~~~~-~g~~g~~~~~~ 85 (306)
|-.||||++.+|.+.|.+.|.+|.+ -..-+.|+..+
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH
Confidence 6678999999999999999999864 34445566555
No 165
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=63.07 E-value=8.8 Score=38.41 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=29.8
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
.+++|+|.| -.||||...-|-..|++.|+++++.
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavI 44 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVI 44 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEE
Confidence 468999999 6799999999999999999998643
No 166
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=62.89 E-value=7.6 Score=32.52 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=17.8
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL 65 (306)
+|+|+|- .||||++..|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4778875 48999999999998
No 167
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=62.14 E-value=11 Score=34.14 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=29.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
...++|+|+|.+ ||||+...+...|...|+++.+.
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i 68 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVI 68 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467899999965 79999999999999999988643
No 168
>PRK05480 uridine/cytidine kinase; Provisional
Probab=62.12 E-value=9.9 Score=32.15 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.6
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHH
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
.+..+|+|+|- .||||++..|...|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46679999997 48999999999988
No 169
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=62.00 E-value=8.1 Score=33.99 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=16.8
Q ss_pred cEEEEecC--CChhhHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQ 63 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~ 63 (306)
.+|+|||. .||||++.++..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~ 23 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILRE 23 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 58999997 689999888764
No 170
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=61.85 E-value=9.7 Score=34.65 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=27.0
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCcccccCCChh
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~ 81 (306)
-|-.||||++..++--+.+.|+++.+.++....
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 467999999999999999999999877765443
No 171
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=61.81 E-value=7 Score=34.78 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=21.9
Q ss_pred cCCChhhHHHHHHHHHHhcCCCccccc
Q 021862 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 50 GT~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
|--|||||+.=|+..|.+.|++|...|
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iG 35 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIG 35 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCcccChhhhHHHHHHHhccceeeEec
Confidence 567999999999999999999986544
No 172
>PRK08233 hypothetical protein; Provisional
Probab=61.22 E-value=8.1 Score=31.57 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=19.9
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
..+|+|+|.. ||||.+..|...|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689998874 79999999988775
No 173
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.72 E-value=13 Score=35.79 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=27.0
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..+|.++|- .|||||+.-|..-|.+.|+++.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 456777765 4899999999999999999886543
No 174
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=60.40 E-value=8.3 Score=32.18 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=18.1
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+|+|||. .||||.+.++.. .|+.+
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~v 27 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPV 27 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCE
Confidence 6999996 689999887654 67665
No 175
>PTZ00301 uridine kinase; Provisional
Probab=60.17 E-value=12 Score=32.14 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.0
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHh
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNH 67 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~ 67 (306)
..+|+|+|- .||||.+..|.+-|..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 468999995 6899999888766653
No 176
>PRK10818 cell division inhibitor MinD; Provisional
Probab=60.15 E-value=8.9 Score=33.84 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.5
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+ |=.||||++.-|+..|...|+++.+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vll 36 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 456665 5568999999999999999998853
No 177
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=59.92 E-value=12 Score=35.86 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=28.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+..+|+|+|-+ ||||.+..|..+|+..|++++..+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvIS 247 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLS 247 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 34689999975 799999999999988777765443
No 178
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=59.83 E-value=12 Score=25.51 Aligned_cols=20 Identities=45% Similarity=0.650 Sum_probs=16.8
Q ss_pred EEEecC--CChhhHHHHHHHHH
Q 021862 46 LAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 46 I~VtGT--~GKTTt~~ll~~iL 65 (306)
|.|+|. .||||.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 667775 47999999999999
No 179
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=59.80 E-value=22 Score=29.78 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=27.7
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++..+|=.||= .||||.+..|...|.+.|+.+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 45568888885 5899999999999999998873
No 180
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=59.62 E-value=11 Score=32.01 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~ 67 (306)
...+|+|+|- .||||.+..|...|..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568999997 4899999999988864
No 181
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=59.53 E-value=8.1 Score=35.72 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=29.5
Q ss_pred CCcEEEE----ecCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~V----tGT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
..|+|.| .|-.|||-++.+|...|++.|+++++.
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il 92 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV 92 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEE
Confidence 5678877 688999999999999999999998643
No 182
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=58.84 E-value=9.6 Score=30.85 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.4
Q ss_pred cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 50 GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 50 GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+-.|||+++.-|...|++.|.++++
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~ 31 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGY 31 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEE
Confidence 3479999999999999999999865
No 183
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=58.69 E-value=8.5 Score=35.35 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=28.1
Q ss_pred CcEEEE----ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 43 IKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 43 ~~~I~V----tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.|+|.| .|-+|||-++-+|..-|++.|.+++.
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gv 82 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGV 82 (336)
T ss_pred CCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEE
Confidence 567765 69999999999999999999999863
No 184
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=58.62 E-value=6.9 Score=31.64 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=14.5
Q ss_pred EEEecC--CChhhHHHHHHHH
Q 021862 46 LAVTGT--NGKSTVVTFVGQM 64 (306)
Q Consensus 46 I~VtGT--~GKTTt~~ll~~i 64 (306)
|+|||+ .||||++..|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 788996 5899999988866
No 185
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=58.46 E-value=8.8 Score=34.49 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=21.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCC
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~ 71 (306)
+.|=+|| |||+++..+...+.+.|..
T Consensus 63 l~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 63 FTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred EEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 5566788 9999999999999987753
No 186
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=58.39 E-value=13 Score=33.90 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=86.3
Q ss_pred ccCchHHH-HHHhcCCee--eehHH-HH-HhhCC----CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCcccccC--
Q 021862 12 QLKATGLA-CLLQSGKRV--MSELD-FA-AQVIP----RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN-- 77 (306)
Q Consensus 12 ~~~~p~~~-~~~~~~~~~--l~~~~-~~-~~~~~----~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~~g~-- 77 (306)
-.++|++. .|.+.+.+. .+++. .+ ....+ .+.++|.|.|| -||-||+..|...+++.|+++...++
T Consensus 108 ls~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgq 187 (339)
T COG3367 108 LSDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQ 187 (339)
T ss_pred hhcChHHHHHHHHcCCeeEeeccCccchhhhccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCc
Confidence 56677774 467766643 23322 11 11211 24679999999 49999999999999999999864443
Q ss_pred CC-------hhhhhh-------hhccccCCCCCCCCcEEEEEeccccccc-----CCc--eecccEEEEec-CChhhhhc
Q 021862 78 LG-------NPLSEA-------AFHCIALPSSKPKFQVAVVEVSSYQMEI-----PNK--YFCPTVSVVLN-LTPDHLER 135 (306)
Q Consensus 78 ~g-------~~~~~~-------~~~~~~~~~~~~~~~~~V~E~~~~~~~~-----~~~--~~~p~i~viTn-i~~dH~~~ 135 (306)
.| .....- ..+.+......++.|+.++|--..=.+. +.. ...||..|+-. =.+.|.+-
T Consensus 188 tgil~~~~gvvvdav~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g 267 (339)
T COG3367 188 TGILIADDGVVVDAVVMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDG 267 (339)
T ss_pred eeeEEecCceEecchhHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccC
Confidence 11 111000 0111111112357899999976321111 111 24788777665 34455553
Q ss_pred cC----CHHHHHHHHHHhhccccCCeeEE--EeCCChhhHHHHhccc
Q 021862 136 HK----TMKNYALTKCHLFSHMVNTKLGL--LPFGNQHLNEAIKGHR 176 (306)
Q Consensus 136 ~g----t~e~~~~~k~~i~~~~~~~~~~V--~n~dd~~~~~~~~~~~ 176 (306)
|+ .++++..--..+ ...+--+.++ =|.|++.++.++.+..
T Consensus 268 ~P~~ip~leevi~l~e~l-~~a~Vvgi~lNtr~~dE~~are~~a~l~ 313 (339)
T COG3367 268 FPEPIPPLEEVIALYELL-SNAKVVGIALNTRNLDEEEARELCAKLE 313 (339)
T ss_pred CCCcCCCHHHHHHHHHHc-cCCcEEEEEecccccChHHHHHHHHHHh
Confidence 33 666654443322 2111112222 1456666776665543
No 187
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.03 E-value=15 Score=34.89 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=27.8
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
..+|++.|-+ |||||..-|+.-|...|.++++...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3567777754 7999999999999999998875444
No 188
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=57.88 E-value=8.1 Score=32.51 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=17.5
Q ss_pred EEEEec--CCChhhHHHHHHHHH
Q 021862 45 ILAVTG--TNGKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtG--T~GKTTt~~ll~~iL 65 (306)
+|+|+| ..||||.+..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 478888 468999999998886
No 189
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=57.52 E-value=14 Score=31.87 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=26.0
Q ss_pred cEEEEec--CCChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.|-+|| ..||||.+.-|+.+|++.++.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 5677888 67999999999999999988773
No 190
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=57.09 E-value=7.6 Score=34.72 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHhcCC
Q 021862 45 ILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL~~~g~ 70 (306)
+|+|+|.+ ||||.++.|..+|...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~ 28 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV 28 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCce
Confidence 47888875 799999999999976544
No 191
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=56.77 E-value=13 Score=33.06 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=24.8
Q ss_pred cEEEEec----CCChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtG----T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
|.|.||| +-||+-|++-+..+|+..|+++.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~ 35 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVT 35 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeee
Confidence 5688888 56999999999999999999984
No 192
>PRK07429 phosphoribulokinase; Provisional
Probab=55.73 E-value=13 Score=34.25 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.0
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~ 68 (306)
+..+|+|+|. .||||.++.|..+|...
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 5569999995 58999999999999754
No 193
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=55.47 E-value=9.5 Score=33.35 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=26.1
Q ss_pred EEEEe--cCCChhhHHHHHHHHHHhcCCCccccc
Q 021862 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 45 ~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
.|+|= |--|||||+.=++..|.+.|+++...|
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vG 36 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVG 36 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEc
Confidence 34443 567999999999999999999997655
No 194
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=55.13 E-value=9.9 Score=31.13 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=16.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
+|.|.|+ .||||...+|.+-|.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhC
Confidence 4445544 389999999998887
No 195
>PRK07933 thymidylate kinase; Validated
Probab=55.03 E-value=16 Score=31.21 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=24.9
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.|+|-|. .||||.+.+|..-|+..|+++.+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~ 33 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVAT 33 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4666663 68999999999999999988753
No 196
>PRK00698 tmk thymidylate kinase; Validated
Probab=54.87 E-value=19 Score=30.00 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=25.3
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
...|+|.|- .||||.+..|+.-|...|..+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~ 35 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVV 35 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCcee
Confidence 357888885 6899999999999988876553
No 197
>PRK10867 signal recognition particle protein; Provisional
Probab=54.54 E-value=17 Score=34.90 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=27.4
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhc-CCCccccc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHL-GIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~-g~~~~~~g 76 (306)
..+|.++|-+ |||||+.-++.-|... |.++.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4578888864 7999999999989888 99886544
No 198
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=54.53 E-value=17 Score=32.58 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=25.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhc-C-CCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL-G-IEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~-g-~~~~~~g 76 (306)
+..+|++.|.+ |||||+.-|..-+... | +++.+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 34578887754 7999999999888765 4 6775443
No 199
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=54.26 E-value=14 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.4
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHH
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
..+|+|.|+ .||||.+.+|+.=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 468999997 689999999888776
No 200
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.78 E-value=9.9 Score=36.37 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=25.4
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHH-hcCCCccccc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLN-HLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~-~~g~~~~~~g 76 (306)
..+|.++|. .|||||+.-++.-|. +.|.++.+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 346777775 579999999998886 5788886443
No 201
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=53.56 E-value=14 Score=27.95 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=15.6
Q ss_pred EEEecC--CChhhHHHHHHHHH
Q 021862 46 LAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 46 I~VtGT--~GKTTt~~ll~~iL 65 (306)
|.|+|. .||||++..|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 445554 48999999999997
No 202
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=52.69 E-value=38 Score=30.61 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=26.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccCCChh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~~g~~ 81 (306)
++..+|.|+|++ ||||....+-..|........+.|..+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~ 144 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTV 144 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcH
Confidence 578899999987 58887766666665543223345554443
No 203
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=52.25 E-value=17 Score=32.54 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=24.3
Q ss_pred cEEEEec--CCChhhHHHHHHHHHHhcCCCccccc
Q 021862 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 44 ~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+.|.++| ..||||.+.-|...|.+.+.++.+.+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 5788888 57999999999999999888875544
No 204
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.57 E-value=21 Score=36.82 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=28.6
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
..++|+||++ .||||++.-|+..|...|.+|.+.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 4578888865 589999999999999999998643
No 205
>PRK04040 adenylate kinase; Provisional
Probab=51.28 E-value=18 Score=30.29 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=21.4
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
++|.|||. .||||.+..+.+-|. .++++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 57888887 489999999988885 24544
No 206
>PRK06547 hypothetical protein; Provisional
Probab=51.15 E-value=26 Score=28.90 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
....+|+|+|.. ||||++..|.+.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789998875 6999999988765
No 207
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=50.73 E-value=14 Score=31.59 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.2
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCcccc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
...|++-|- .||||.+.+|...|++.|+++...
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 346777775 689999999999999999887543
No 208
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=50.29 E-value=18 Score=35.52 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=25.9
Q ss_pred CCCcEEEEecCC------ChhhHHHHHHHHHHhcCCCcc
Q 021862 41 RSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 41 ~~~~~I~VtGT~------GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.+.+.|.||+.+ |||||+-=|.+.|...|.++.
T Consensus 52 ~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~ 90 (557)
T PF01268_consen 52 PDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAI 90 (557)
T ss_dssp ---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EE
T ss_pred CCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceE
Confidence 367899999986 999999999999999999863
No 209
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.28 E-value=24 Score=33.34 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..++|+++| -.|||||..-|...+...|.++++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456888888 56899999999998888898886544
No 210
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=50.22 E-value=15 Score=32.16 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.5
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
-|-.||||++..+++.|...|.++.+.
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999999998644
No 211
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=50.05 E-value=16 Score=30.17 Aligned_cols=25 Identities=44% Similarity=0.743 Sum_probs=19.5
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+|+|||. .||||.+.++.. .|+.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i 27 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVI 27 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEE
Confidence 4889986 589999999887 466653
No 212
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=49.97 E-value=28 Score=30.98 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=21.5
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHH-hcCCCc
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLN-HLGIEA 72 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~-~~g~~~ 72 (306)
++|+|+ |-.||||++.=+..++. ..|.++
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V 35 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVV 35 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeE
Confidence 567777 88899999999955555 455553
No 213
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=49.87 E-value=22 Score=34.61 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=28.0
Q ss_pred CCcEEEEec------CCChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtG------T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.++|.||. --|||||+.=|.+.|.+.|.++.
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l 74 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 568999999 34999999999999999999853
No 214
>PLN02924 thymidylate kinase
Probab=49.85 E-value=27 Score=30.14 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
....|+|-|- .||||-+.+|..-|...|+++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 4568999985 6899999999999999998874
No 215
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=49.24 E-value=16 Score=32.25 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=24.8
Q ss_pred cCCChhhHHHHHHHHHHhcCCCcccccCC
Q 021862 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (306)
Q Consensus 50 GT~GKTTt~~ll~~iL~~~g~~~~~~g~~ 78 (306)
|-.||||++.-+...+.+.|+++.+....
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd~D 37 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVSTD 37 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEeCC
Confidence 55799999999999999999998765543
No 216
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=49.19 E-value=10 Score=30.78 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=16.7
Q ss_pred EEecCCChhhHHHHHHHHHHhc
Q 021862 47 AVTGTNGKSTVVTFVGQMLNHL 68 (306)
Q Consensus 47 ~VtGT~GKTTt~~ll~~iL~~~ 68 (306)
+|+|| ||||+...|++-|...
T Consensus 2 GVsG~-GKStvg~~lA~~lg~~ 22 (161)
T COG3265 2 GVSGS-GKSTVGSALAERLGAK 22 (161)
T ss_pred CCCcc-CHHHHHHHHHHHcCCc
Confidence 46665 9999999999888743
No 217
>PRK13768 GTPase; Provisional
Probab=49.12 E-value=15 Score=32.30 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.1
Q ss_pred EEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+|.|+| ..||||++.-+...|...|.++.+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~ 35 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAI 35 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 455554 568999999999999999998864
No 218
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=48.85 E-value=16 Score=31.33 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=19.4
Q ss_pred cEEEEecCCChhhHHHHHHHHHH-hcCCCccc
Q 021862 44 KILAVTGTNGKSTVVTFVGQMLN-HLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtGT~GKTTt~~ll~~iL~-~~g~~~~~ 74 (306)
-++|-||| |||+|+..|-+=+. ..+.++.+
T Consensus 27 ~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ii 57 (229)
T PF01935_consen 27 AIFGTTGS-GKSNTVKVLLEELLKKKGAKVII 57 (229)
T ss_pred EEECCCCC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 47777775 99988776655555 55555433
No 219
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=48.67 E-value=21 Score=34.48 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=26.5
Q ss_pred cEEEEec----CCChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtG----T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.|.||| +-||+-|++-|..+|++.|++|.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt 35 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 35 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEE
Confidence 4677777 67999999999999999999984
No 220
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=48.44 E-value=16 Score=33.57 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=52.9
Q ss_pred EEEEe--cCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-cc-CCCCCCCCcEEEEEeccc-ccc-------
Q 021862 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IA-LPSSKPKFQVAVVEVSSY-QME------- 112 (306)
Q Consensus 45 ~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~-~~~~~~~~~~~V~E~~~~-~~~------- 112 (306)
++.++ |-.||||++.-++--|.+.|.++.+.++.+.......+.. +. .+. +-.-..-++|.+.- .++
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~-~I~~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPR-KVGPNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchh-hcCCCCceeeecHHHHHHHHHHHHH
Confidence 44554 5689999999999999999988776665433222222111 00 000 00123456777732 111
Q ss_pred -cCCceecccEEEEecCChhhhhccCCHHHHHH
Q 021862 113 -IPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144 (306)
Q Consensus 113 -~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~ 144 (306)
.... ......+-++..|+....+.+|+++.
T Consensus 83 ~~~~~--~~~~~~l~~~~~~e~~~~PGidE~~~ 113 (322)
T COG0003 83 DYLAR--LLRTRGLGGIYADELATLPGIDEALA 113 (322)
T ss_pred HHHHh--hccccccchhHHHHHhhCCCHHHHHH
Confidence 0111 12223336677788888887777643
No 221
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=48.27 E-value=20 Score=31.82 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=20.0
Q ss_pred CCCcEEEEecCCChhhHH-HHHHHHHHhcCCC
Q 021862 41 RSIKILAVTGTNGKSTVV-TFVGQMLNHLGIE 71 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~-~ll~~iL~~~g~~ 71 (306)
+...+.|.+|| |||||. +-+.++|...+..
T Consensus 14 ~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~~~ 44 (315)
T PF00580_consen 14 GPLLVNAGAGS-GKTTTLLERIAYLLYEGGVP 44 (315)
T ss_dssp SEEEEEE-TTS-SHHHHHHHHHHHHHHTSSST
T ss_pred CCEEEEeCCCC-CchHHHHHHHHHhhccccCC
Confidence 45568888886 999976 4556777766544
No 222
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=47.94 E-value=15 Score=30.51 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=16.5
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL 65 (306)
+|+|||+ .||||.+.++....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 4899997 58999988877653
No 223
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=47.91 E-value=25 Score=31.00 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=25.3
Q ss_pred EEEEec----CCChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtG----T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.|.||| +-||+-+++-+..+|+..|+++.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~ 34 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 34 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEE
Confidence 466777 56999999999999999999984
No 224
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=47.87 E-value=22 Score=34.06 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=24.4
Q ss_pred EEEEecC---CChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.|.|||| .|||+++..|.+.|++.|.++.
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~ 34 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQ 34 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE
Confidence 4666666 5999999999999999998874
No 225
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=47.71 E-value=23 Score=28.26 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.3
Q ss_pred EEEec--CCChhhHHHHHHHHHHhcCCCc
Q 021862 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 46 I~VtG--T~GKTTt~~ll~~iL~~~g~~~ 72 (306)
|.++| -.||||.+..|...|...|.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~ 30 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPV 30 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 45555 3699999999999998877654
No 226
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=47.70 E-value=19 Score=30.40 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+|+|||. .||||.+.++.. .|..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~v 28 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLI 28 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 57999997 589999988873 56654
No 227
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=47.37 E-value=27 Score=29.35 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=17.5
Q ss_pred cEEEEecCC--ChhhHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQM 64 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~i 64 (306)
.+++|||.| ||||...++...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 689999998 688888888743
No 228
>PLN02348 phosphoribulokinase
Probab=47.31 E-value=24 Score=33.27 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhc
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~ 68 (306)
++..+|+|+|- .||||.++.|..+|...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35569999996 58999999999999754
No 229
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=46.97 E-value=23 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=22.7
Q ss_pred HHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 35 AAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 35 ~~~~~~~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+.... +....+.|+|.+ ||||+...+...+..
T Consensus 18 l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 18 LWLAV-EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 34344 456789999966 899998887776653
No 230
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=46.90 E-value=11 Score=30.96 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEecCCChhhHHHHHHHHHHhcCC
Q 021862 46 LAVTGTNGKSTVVTFVGQMLNHLGI 70 (306)
Q Consensus 46 I~VtGT~GKTTt~~ll~~iL~~~g~ 70 (306)
||+-| .||||++..|+++|.++|+
T Consensus 5 IAtiG-CGKTTva~aL~~LFg~wgH 28 (168)
T PF08303_consen 5 IATIG-CGKTTVALALSNLFGEWGH 28 (168)
T ss_pred ecCCC-cCHHHHHHHHHHHcCCCCc
Confidence 44445 5999999999999988765
No 231
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.70 E-value=26 Score=34.08 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=24.8
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH-hcCC-Ccccc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLGI-EAFVG 75 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~-~~g~-~~~~~ 75 (306)
..+|++.|.| |||||...|...+. ..|. ++++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4688888876 69999999999885 4553 66543
No 232
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=46.26 E-value=22 Score=36.18 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=24.5
Q ss_pred EEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.|-|+|| .|||+++.-|.+.|++.|++++.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~ 36 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGF 36 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 4555554 78999999999999999998853
No 233
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=45.87 E-value=1.7e+02 Score=24.11 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=51.2
Q ss_pred EEEEecCCChh--hHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccE
Q 021862 45 ILAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122 (306)
Q Consensus 45 ~I~VtGT~GKT--Tt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i 122 (306)
.|-++|.-|-+ |+..+|..++...|+.+...-+++.-. .....++-+=+|...+.......+||+
T Consensus 3 ~i~i~G~gGqGv~tag~ila~a~~~~G~~V~~~~~ygs~~-------------RGG~~~~~vris~~~i~~~~~~~~~D~ 69 (181)
T PRK08534 3 EIRFHGRGGQGAVTAAEILAKAAFEDGKFSQAFPFFGVER-------------RGAPVMAFTRIDDKPIRLRSQIYEPDY 69 (181)
T ss_pred EEEEEEECcchHHHHHHHHHHHHHhcCCeEEEEeccChhh-------------cCCcEEEEEEEcCCcccCcccCCCCCE
Confidence 45666666655 556688888988999885444444221 112222333344444322222246788
Q ss_pred EEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCC
Q 021862 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (306)
Q Consensus 123 ~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~d 164 (306)
.+..+-.. + ......+.++++|.+|+|.+
T Consensus 70 lva~~~~~-----------~--~~~~~~~~l~~gg~vi~ns~ 98 (181)
T PRK08534 70 VIVQDPTL-----------L--DSVDVTSGLKKDGIIIINTT 98 (181)
T ss_pred EEEcCHHH-----------h--cchhHhcCcCCCcEEEEECC
Confidence 77765311 1 11122344678999999964
No 234
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=45.63 E-value=25 Score=36.61 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCcc
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~ 73 (306)
-+.+.+.||||| |||-++..|.+.++..|.++.
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~ 60 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVL 60 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 477899999997 999999999999999988763
No 235
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=45.53 E-value=29 Score=34.16 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=28.2
Q ss_pred CCcEEEEec------CCChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtG------T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.++|.||. .-|||||+.=|.+.|.+.|.++.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468999999 34899999999999999999864
No 236
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=45.23 E-value=18 Score=29.44 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=24.7
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
++.++|- .||||++..+...+.+.|.++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3455554 5899999999999999998886544
No 237
>PRK06761 hypothetical protein; Provisional
Probab=44.67 E-value=19 Score=32.45 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=24.7
Q ss_pred cEEEEec--CCChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++|.|+| -.||||++..+..-|...|+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 4788888 46899999999999988777763
No 238
>PRK05541 adenylylsulfate kinase; Provisional
Probab=44.54 E-value=37 Score=27.68 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=24.1
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+..+|.++|- .||||.+..+..-|...+..+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4568888886 479999999999998765443
No 239
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=44.29 E-value=25 Score=29.85 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=19.7
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
..+|+|||. .||||.+.++.. .|..+
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~----~g~~v 32 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE----MGCEL 32 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 357999997 579999888765 46554
No 240
>PRK00300 gmk guanylate kinase; Provisional
Probab=44.15 E-value=23 Score=29.63 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+|+|.|.+ ||||.+.+|...+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 55789999986 89999999888765
No 241
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=44.11 E-value=20 Score=30.63 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.4
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
.|-.||||++..+...+.+.|+++.+..
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~~l~~ 34 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKVLLVS 34 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3456999999999999999999986543
No 242
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=43.42 E-value=30 Score=34.06 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=27.6
Q ss_pred CCcEEEEec------CCChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtG------T~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+.++|.||. --|||||+.=|.+.|.+.|.++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 568999999 4499999999999999999875
No 243
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=43.34 E-value=25 Score=27.61 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=35.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCCccccc-CCChhhhhhhhccccCCCCCCCCcEEEEEeccc
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG-NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g-~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~ 109 (306)
+.+..|-.||||++..+..-+.+.|.++.+.. ..+.+ .-++|+.|+.++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~--------------~~~yd~VIiD~p~~ 55 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA--------------NLDYDYIIIDTGAG 55 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC--------------CCCCCEEEEECCCC
Confidence 34556888999999999999999998875432 11111 11278999999853
No 244
>PRK13695 putative NTPase; Provisional
Probab=43.32 E-value=33 Score=27.97 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
.|++||.+ ||||....+..-|...|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 37788765 79999998888887777654
No 245
>PLN02422 dephospho-CoA kinase
Probab=43.24 E-value=25 Score=30.69 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=19.6
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
++|+|||. .||||.+.++. +.|..+
T Consensus 2 ~~igltG~igsGKstv~~~l~----~~g~~~ 28 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK----SSGIPV 28 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH----HCCCeE
Confidence 47999996 58999998886 356665
No 246
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=43.22 E-value=32 Score=30.03 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=26.0
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCC
Q 021862 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~ 71 (306)
++.|.|+| ..||||-+.-|...|++.|.|
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 46788998 689999999999999999976
No 247
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=42.99 E-value=25 Score=29.47 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=19.5
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+|+|||. .||||.+.++.. .|+.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~----~g~~~ 29 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE----LGAPV 29 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 57999995 689999998876 35554
No 248
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=42.86 E-value=25 Score=34.61 Aligned_cols=32 Identities=31% Similarity=0.205 Sum_probs=28.8
Q ss_pred CCcEEEEecCC------ChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT~------GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.+.|.||+.+ |||||+-=|.+.|...|.++.
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 56899999986 999999999999999999873
No 249
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=42.80 E-value=20 Score=30.30 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=14.8
Q ss_pred EEEEecCC--ChhhHHHHHHH
Q 021862 45 ILAVTGTN--GKSTVVTFVGQ 63 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~ 63 (306)
+|+|||.+ ||||.+.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 37999976 69998887753
No 250
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=42.24 E-value=24 Score=33.38 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.1
Q ss_pred cEEEEecC--CChhhHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQ 63 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~ 63 (306)
.+|+|||. .||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 57999995 799999999875
No 251
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=42.20 E-value=37 Score=28.52 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=24.3
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..++.|+|-- |||++...+...+.+.|+++...+
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 3456666655 599999999999999998875444
No 252
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=41.90 E-value=18 Score=30.67 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=24.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g 69 (306)
.....+-|+|-| ||||..++|.-+++...
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~ 56 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDA 56 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCCCC
Confidence 355689999998 59999999999999643
No 253
>PRK08118 topology modulation protein; Reviewed
Probab=41.75 E-value=31 Score=28.20 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=17.2
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
+.|.|.|. .||||.+..|+..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35667664 589999999888765
No 254
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=41.71 E-value=18 Score=29.88 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.4
Q ss_pred CChhhHHHHHHHHHHhcCCCc
Q 021862 52 NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 52 ~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.||||.+.+|..-|...|+++
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~ 27 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKV 27 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcc
Confidence 599999999999999999874
No 255
>PLN02759 Formate--tetrahydrofolate ligase
Probab=41.68 E-value=32 Score=34.24 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=28.3
Q ss_pred CCcEEEEecCC------ChhhHHHHHHHHHHh-cCCCcc
Q 021862 42 SIKILAVTGTN------GKSTVVTFVGQMLNH-LGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT~------GKTTt~~ll~~iL~~-~g~~~~ 73 (306)
+.+.|.||+.+ |||||+-=|.+.|.. .|.++.
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~ 106 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVV 106 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeE
Confidence 56899999976 999999999999997 888863
No 256
>PRK05380 pyrG CTP synthetase; Validated
Probab=41.59 E-value=33 Score=33.74 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=27.7
Q ss_pred CcEEEEec----CCChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~VtG----T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.|.|.||| +-||+.|++-+..+|+..|++|.
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~ 36 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 36 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 46788888 67999999999999999999984
No 257
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=41.25 E-value=24 Score=28.21 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=23.0
Q ss_pred EEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 46 I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
|++.|- .||||+...+...+.+.|.++.+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~i 32 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAV 32 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 445443 58999999999999999988754
No 258
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=41.14 E-value=27 Score=26.95 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
...+++|+|.| ||||...+|......
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 45689999998 799888877666553
No 259
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=40.85 E-value=28 Score=29.69 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=20.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+..+|++||. .||||.++++..- .|..+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~---lg~~v 34 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEK---LNLNV 34 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHH---cCCeE
Confidence 3458999996 6899999988753 35544
No 260
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=40.60 E-value=13 Score=30.50 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCC-CcEEEEECC
Q 021862 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGG 301 (306)
Q Consensus 247 ~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~-~~~i~v~G~ 301 (306)
+.|. .+|+|+|..++-.+..... .+. ..-..|++++++..+. .+-++|+||
T Consensus 48 eslp-~~pLp~R~niVlSr~~~~~--~~~-~~~~~s~~~al~~~~~~~~~i~ViGG 99 (161)
T PF00186_consen 48 ESLP-FRPLPGRINIVLSRNPDYE--PEG-VEVVSSLEEALELAKDKDEEIFVIGG 99 (161)
T ss_dssp HHST-GSSBTTSEEEEESSSTTSC--TTT-SEEESSHHHHHHHHTTSESEEEEEE-
T ss_pred hcCC-ccCCCCCeEEEEEcCcccc--cCC-ceeeCCHHHHHHHhhccCCcEEEECC
Confidence 3444 6789999999853222100 011 1223344555543332 256778887
No 261
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=40.39 E-value=17 Score=30.16 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=18.4
Q ss_pred cEEEEec--CCChhhHHHHHHHHHHh
Q 021862 44 KILAVTG--TNGKSTVVTFVGQMLNH 67 (306)
Q Consensus 44 ~~I~VtG--T~GKTTt~~ll~~iL~~ 67 (306)
++|.++| |.||||+++.|...|..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~ 27 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE 27 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC
Confidence 3566665 68999999999998764
No 262
>PRK06217 hypothetical protein; Validated
Probab=40.20 E-value=30 Score=28.59 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.0
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL 65 (306)
.|.|+|. .||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 4677764 58999999999877
No 263
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=40.20 E-value=31 Score=28.99 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=19.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+|+|||. .||||.+.++...+ |..+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~ 29 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPI 29 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeE
Confidence 47999996 58999999887654 5544
No 264
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=40.10 E-value=34 Score=31.94 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=26.4
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+..+|+|+|. .||||....|...|++. +++++
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ 37 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGY 37 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEE
Confidence 5568999994 58999999999999987 77754
No 265
>PRK13973 thymidylate kinase; Provisional
Probab=40.08 E-value=24 Score=30.06 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=26.3
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCcccc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
..|.+-|. .||||.+.+|+.-|...|+++...
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46677775 589999999999999999988543
No 266
>PRK07261 topology modulation protein; Provisional
Probab=39.85 E-value=32 Score=28.21 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=15.2
Q ss_pred EEEEecCC--ChhhHHHHHHHHH
Q 021862 45 ILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL 65 (306)
.|.|.|.. ||||.+..|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 35666654 8999998886554
No 267
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=39.79 E-value=29 Score=28.29 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=18.6
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
++|.|+|.+ ||||++..|...+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 367888875 799999998877654
No 268
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=39.49 E-value=40 Score=28.76 Aligned_cols=29 Identities=38% Similarity=0.585 Sum_probs=20.6
Q ss_pred cEEEEecCC--ChhhHHHHHH--HHHHhcCCCc
Q 021862 44 KILAVTGTN--GKSTVVTFVG--QMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~--~iL~~~g~~~ 72 (306)
+.+.|||.| ||||....+. .++.+.|.-+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 789999998 5777766666 4455666544
No 269
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=39.40 E-value=30 Score=29.79 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
....++++-|-| ||||+.+||+.+|.-.
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 356789999988 5999999999999853
No 270
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=39.12 E-value=37 Score=27.73 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
+.++|.|.|.+ ||||.+..|..-+ |+.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~---g~~~ 31 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY---GFTH 31 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CCcE
Confidence 45788888875 7999998887654 5544
No 271
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=38.97 E-value=34 Score=28.40 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=19.3
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
.+++.|||-. ||||.+..+...|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4678888864 7999999999988
No 272
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=38.91 E-value=53 Score=29.75 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=50.1
Q ss_pred CcEEEEEecc-cccccC-CceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCC--ChhhHHHHh
Q 021862 99 FQVAVVEVSS-YQMEIP-NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG--NQHLNEAIK 173 (306)
Q Consensus 99 ~~~~V~E~~~-~~~~~~-~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~d--d~~~~~~~~ 173 (306)
.+++=||.+- ...+.. ....+|+++|+..+ .|.|++-+.+.++...+.+.+.++|++|+-.+ -|....++.
T Consensus 187 ~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL----~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr 261 (311)
T PF12147_consen 187 EDIARFEQGDAFDRDSLAALDPAPTLAIVSGL----YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIAR 261 (311)
T ss_pred ccceEEEecCCCCHhHhhccCCCCCEEEEecc----hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHH
Confidence 3556777773 222222 22247899999999 67888888888888888888999999999763 355554443
No 273
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=38.67 E-value=48 Score=22.44 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.0
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcC
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~~g 69 (306)
++..|+|-| ||||....+..+|-...
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 478888876 69999999999887543
No 274
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=38.57 E-value=28 Score=37.03 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=23.0
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++.|+|- .||||+...+..++.+.|+++.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~ 394 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVR 394 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4456654 3899999999999999999874
No 275
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=38.44 E-value=37 Score=32.98 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhc
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~ 68 (306)
.+++.|.||||. |||+++..|.+.|++.
T Consensus 236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 457789999985 9999999999999974
No 276
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=38.34 E-value=34 Score=29.23 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCC
Q 021862 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302 (306)
Q Consensus 268 ~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~ 302 (306)
.+.|+|++-|.+|+.++..+..+.++..+++.|+.
T Consensus 121 ~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--
T ss_pred eEEEEecccCCCHHHHHHHHcccCCCcEEEEecCc
Confidence 45677777778999999999999877889999985
No 277
>PRK06762 hypothetical protein; Provisional
Probab=38.28 E-value=38 Score=27.23 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=18.4
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
++|.++|. .||||.+..|..-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888884 68999999998777
No 278
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=37.91 E-value=40 Score=33.14 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=26.7
Q ss_pred cEEEEec----CCChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtG----T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
|.|.||| +-||+.+++-+..+|+..|++|.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~ 35 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVT 35 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 5678888 46999999999999999999984
No 279
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=37.76 E-value=43 Score=28.25 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=21.1
Q ss_pred cEEEEecCC--ChhhHHHHHHHHH--HhcCCC
Q 021862 44 KILAVTGTN--GKSTVVTFVGQML--NHLGIE 71 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL--~~~g~~ 71 (306)
.++++||-| ||||..+++.... ...|..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~ 57 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAP 57 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCE
Confidence 789999998 6999999987544 345543
No 280
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=37.67 E-value=1.5e+02 Score=21.12 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=26.3
Q ss_pred CCCeeeEEeeccCCE-EEEEcCCCCcHHHHHHHHhccCCCcEEEEECC
Q 021862 255 PPHRMQIVHRDIQGV-TWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301 (306)
Q Consensus 255 ~~gR~e~~~~~~~~~-~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~ 301 (306)
.|||++++-.+...- .+++-...++|+.+..-+.. ++.++|+|+-+
T Consensus 5 ~~grl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T-pdN~lV~V~~~ 51 (83)
T PF10623_consen 5 HPGRLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT-PDNCLVCVLQD 51 (83)
T ss_pred CCCeEEEEEEeCCcceeEeecCCCCCHHHHHhhccC-cCCeEEEEEeC
Confidence 589999986544443 34442223455554443333 56678888754
No 281
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=37.29 E-value=23 Score=32.01 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.7
Q ss_pred ecCCChhhHHHHHHHHHHhcC
Q 021862 49 TGTNGKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g 69 (306)
.|.|||||...+|..+|....
T Consensus 84 ~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred CCCCcHHHHHHHHHHHhChhh
Confidence 689999999999999998754
No 282
>PLN02327 CTP synthase
Probab=36.68 E-value=42 Score=33.14 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=26.7
Q ss_pred cEEEEec----CCChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtG----T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
|.|.||| +-||+.+++-|..+|+..|++|.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~ 35 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCcee
Confidence 5678888 56999999999999999999984
No 283
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=36.23 E-value=73 Score=26.13 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCccc-ccCCC
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV-GGNLG 79 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~-~g~~g 79 (306)
|++-|||- .||||+..-+-. ....|.++++ ...+|
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g 38 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG 38 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence 46778884 689887554444 4567888764 33344
No 284
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=36.23 E-value=27 Score=31.44 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=28.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
+..++++-|-| |||||..||+-++...+=++.+.|-
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~ 86 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCc
Confidence 55689999998 5999999999999876655655553
No 285
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=36.11 E-value=40 Score=27.56 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.3
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
..+..|+|-| ||||+...|..+|...
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3577888876 7999999999999754
No 286
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.98 E-value=48 Score=31.70 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=25.7
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH--hcCCCcccccC
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLN--HLGIEAFVGGN 77 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~--~~g~~~~~~g~ 77 (306)
..+|++.|.+ |||||+.-|...+. ..|.++++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3577777754 79999999988776 56788865443
No 287
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=35.85 E-value=40 Score=26.81 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=30.3
Q ss_pred HHHhhCCCCCcEEEEecCCCh-hhHHHHHHHHHHhcCCCcc
Q 021862 34 FAAQVIPRSIKILAVTGTNGK-STVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 34 ~~~~~~~~~~~~I~VtGT~GK-TTt~~ll~~iL~~~g~~~~ 73 (306)
...+.+ ++.++|+|.|-+-| +.+++.+..-|+++||++.
T Consensus 8 ~i~~iL-~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi 47 (140)
T COG1832 8 DIAEIL-KSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI 47 (140)
T ss_pred HHHHHH-HhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE
Confidence 344445 57889999987665 5678899999999999984
No 288
>PRK00131 aroK shikimate kinase; Reviewed
Probab=35.81 E-value=47 Score=26.59 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=19.6
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHH
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~iL~ 66 (306)
..+.|.++| ..||||++..|++-|.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 445777777 4599999999999873
No 289
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=35.65 E-value=54 Score=27.47 Aligned_cols=27 Identities=30% Similarity=0.731 Sum_probs=19.8
Q ss_pred cEEEEecCC--ChhhHHHHHH--HHHHhcCC
Q 021862 44 KILAVTGTN--GKSTVVTFVG--QMLNHLGI 70 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~--~iL~~~g~ 70 (306)
+++++||-| ||||...++. .++.+.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~ 59 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGL 59 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 689999998 6888888876 23445553
No 290
>PRK04296 thymidine kinase; Provisional
Probab=35.62 E-value=45 Score=27.80 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=19.6
Q ss_pred cEEEEecCCChhhHHHHHHHH--HHhcCCCcccc
Q 021862 44 KILAVTGTNGKSTVVTFVGQM--LNHLGIEAFVG 75 (306)
Q Consensus 44 ~~I~VtGT~GKTTt~~ll~~i--L~~~g~~~~~~ 75 (306)
.++.|||-.|++-|+.++..+ +...|.++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 478899985555555554444 44567777543
No 291
>PF12846 AAA_10: AAA-like domain
Probab=35.61 E-value=32 Score=30.32 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=18.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++|-||+ |||++...+-.-+...|..+.
T Consensus 6 i~G~tGs-GKT~~~~~l~~~~~~~g~~~~ 33 (304)
T PF12846_consen 6 ILGKTGS-GKTTLLKNLLEQLIRRGPRVV 33 (304)
T ss_pred EECCCCC-cHHHHHHHHHHHHHHcCCCEE
Confidence 4455553 899888877666666676654
No 292
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=35.52 E-value=24 Score=33.94 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=25.2
Q ss_pred cEEEEecCCChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
-+-+=||| |||-|...|+.-|++.|..|+
T Consensus 23 LIaGATGT-GKTvTLqvlAE~fS~~GVPVf 51 (502)
T PF05872_consen 23 LIAGATGT-GKTVTLQVLAEQFSDAGVPVF 51 (502)
T ss_pred eeeccCCC-CceehHHHHHHHhhhcCCcEE
Confidence 35566776 999999999999999999986
No 293
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=35.49 E-value=43 Score=28.12 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=15.1
Q ss_pred EEEEecCC--ChhhHHHHHHHHHH
Q 021862 45 ILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.|.|+|-. ||||+.+.+..-+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 57788875 59999885444443
No 294
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=35.10 E-value=42 Score=27.20 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=21.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|.| ||||...++.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999997 79999888877665
No 295
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=34.91 E-value=29 Score=29.36 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 56799999997 89999998887765
No 296
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=34.39 E-value=2.6e+02 Score=22.85 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcC
Q 021862 218 MGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEIL 252 (306)
Q Consensus 218 ~G~~~~~N~l~A~~~a~~~~lg~-~~~~i~~~l~~~ 252 (306)
.|.-...|..+.- +++..+|+ +.+.+.+++++.
T Consensus 125 ~g~~~~~N~v~lG--a~~~~~gl~~~e~~~~~i~~~ 158 (177)
T PRK08537 125 IGLSIVANIVMLG--ALTKLTGIVSKEAIEKAILDS 158 (177)
T ss_pred cCChHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH
Confidence 3544566776555 66777888 999999999864
No 297
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.35 E-value=29 Score=28.51 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+..+++|.|-| ||||...+|..++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 66799999997 899988888776653
No 298
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=34.08 E-value=76 Score=28.40 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=46.3
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC----CCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC--CCcEEEEECCC
Q 021862 233 VLGLDIGVDVEALNSTIEILRTP----PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQ 302 (306)
Q Consensus 233 a~~~~lg~~~~~i~~~l~~~~~~----~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~--~~~~i~v~G~~ 302 (306)
+.....|-++.++++=|+.|+.. ..||-++. .+|..+.+ ....+++...+..++ +-+.|+|-||-
T Consensus 7 ~~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK--~GG~~~~~---~~~~~~l~~dla~L~~lGl~~VlVHGgg 77 (271)
T cd04236 7 AFLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLE--VDHSVFRS---LEMVQSLSFGLAFLQRMDMKLLVVMGLS 77 (271)
T ss_pred HHHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEE--EChhhhcC---chhHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34566788999999999999976 37999995 44434332 445667776666664 45789999883
No 299
>PRK14709 hypothetical protein; Provisional
Probab=34.01 E-value=32 Score=33.38 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.2
Q ss_pred ecCCChhhHHHHHHHHHHhc
Q 021862 49 TGTNGKSTVVTFVGQMLNHL 68 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~ 68 (306)
+|.|||||...+|..+|...
T Consensus 213 ~G~NGKSt~~~~i~~llG~~ 232 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGDY 232 (469)
T ss_pred CCCCcHHHHHHHHHHHHhhh
Confidence 68899999999999999864
No 300
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=33.86 E-value=35 Score=29.89 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.1
Q ss_pred CCcEEEEec--CCChhhHHHHHHHH
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQM 64 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~i 64 (306)
..|.|+|.| +.||||+.+.+...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCC
Confidence 678899999 67999998887754
No 301
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=33.68 E-value=39 Score=26.17 Aligned_cols=21 Identities=43% Similarity=0.717 Sum_probs=15.9
Q ss_pred EEEEecCC--ChhhHHHHHHHHH
Q 021862 45 ILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+|.|+|.+ ||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46777775 6999988887665
No 302
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=33.32 E-value=38 Score=36.50 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=24.3
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.++..|+|- .||||+...+..++.+.|+++.
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~ 429 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVV 429 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 345555554 3899999999999999999874
No 303
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=32.99 E-value=32 Score=27.58 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=14.6
Q ss_pred EEecCC--ChhhHHHHHHHHH
Q 021862 47 AVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 47 ~VtGT~--GKTTt~~ll~~iL 65 (306)
.+.|-+ ||||.+..|..-|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 345543 9999999998876
No 304
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.77 E-value=57 Score=35.68 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=16.2
Q ss_pred EEEEecCCC--hhhHHHHHHHHHHhcCCCc
Q 021862 45 ILAVTGTNG--KSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 45 ~I~VtGT~G--KTTt~~ll~~iL~~~g~~~ 72 (306)
-++++|||| |||+-++ |+--+|-..
T Consensus 19 ~t~i~GTNG~GKTTlLRl---ip~FYGa~p 45 (1201)
T PF12128_consen 19 HTHICGTNGVGKTTLLRL---IPFFYGADP 45 (1201)
T ss_pred ceeeecCCCCcHHHHHHH---HHHhcCCCc
Confidence 478999985 7776665 444444443
No 305
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=32.69 E-value=30 Score=31.24 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
+..++++.|-| ||||+-.+|..++...
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 56799999999 5999999999888864
No 306
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.65 E-value=43 Score=32.49 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=30.5
Q ss_pred eeehHHHHHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccc
Q 021862 28 VMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+|+.+...++.- +.-+|.+.|.| ||||..+=|+.-|.+.+++|.+
T Consensus 365 lLRdI~sar~~k--rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLI 411 (587)
T KOG0781|consen 365 LLRDIMSARRRK--RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLI 411 (587)
T ss_pred HHHHHHHHHhcC--CCeEEEEEeecCccccchHHHHHHHHHhCCceEEE
Confidence 444444444333 44466666766 6999999898888888888854
No 307
>COG3910 Predicted ATPase [General function prediction only]
Probab=32.54 E-value=37 Score=28.88 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=26.5
Q ss_pred cCCeeeehHHHHHhhCCCCCcEEEEecCCC--hhhHHHHHHHHHHhcCCCc
Q 021862 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNG--KSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~I~VtGT~G--KTTt~~ll~~iL~~~g~~~ 72 (306)
-.++++..++. .++-+.|+-.|||-|| |||.. ..|-..+|+..
T Consensus 21 ~slPa~r~l~~---~LeF~apIT~i~GENGsGKSTLL---EaiA~~~~~n~ 65 (233)
T COG3910 21 FSLPAFRHLEE---RLEFRAPITFITGENGSGKSTLL---EAIAAGMGFNA 65 (233)
T ss_pred ccchHHHhhhh---hccccCceEEEEcCCCccHHHHH---HHHHhhccccc
Confidence 34556666654 2225778999999885 66654 44555556554
No 308
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.28 E-value=31 Score=30.54 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=22.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
.+..+++|.|.| ||||...+|.-++..
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 366799999997 899999998877653
No 309
>PLN02318 phosphoribulokinase/uridine kinase
Probab=31.95 E-value=49 Score=33.22 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+|+|+|-+ ||||.+..|...+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 356799999976 79999999998874
No 310
>PRK13947 shikimate kinase; Provisional
Probab=31.76 E-value=54 Score=26.38 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.2
Q ss_pred EEEEec--CCChhhHHHHHHHHHH
Q 021862 45 ILAVTG--TNGKSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtG--T~GKTTt~~ll~~iL~ 66 (306)
.|.++| -.||||++..|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 466666 4689999999998874
No 311
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=31.68 E-value=1.5e+02 Score=25.90 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcCCCC-C------CeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhc
Q 021862 227 AVAALSVLGLDIGVDVEALNSTIEILRTP-P------HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (306)
Q Consensus 227 l~A~~~a~~~~lg~~~~~i~~~l~~~~~~-~------gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~ 289 (306)
..|+ ..|...++|.+.|..+|++-.+. . -+.|.. ..+|+.||.++.-.|..-...-++.
T Consensus 50 ~~ai--~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~--gP~GvaiiVe~lTDN~nRt~~~ir~ 115 (238)
T TIGR01033 50 RTAI--EKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGY--APGGVAIIVECLTDNKNRTASEVRS 115 (238)
T ss_pred HHHH--HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCceEEEEEEecCCHHhHHHHHHH
Confidence 3445 77888999999999999987652 1 244444 4678888888855566655555554
No 312
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=31.43 E-value=81 Score=25.80 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=26.9
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++.=+|=|||- .||||.+-.|++.|-+.|..+.
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y 63 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTY 63 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEE
Confidence 45557888885 5899999999999999987653
No 313
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.37 E-value=61 Score=33.47 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=25.0
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH-hcC-CCccccc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~-~~g-~~~~~~g 76 (306)
..+|++.|-| |||||...|...+. ..| .++.+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 4588888876 69999999998884 555 4665433
No 314
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=31.19 E-value=50 Score=27.67 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=20.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999997 79999888876554
No 315
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.80 E-value=36 Score=28.67 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=20.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366789999997 79998888876654
No 316
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=30.51 E-value=44 Score=31.51 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=27.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
...++.|-|= .||||.+++|..=|-+.|+++.+
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~i 106 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAI 106 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEE
Confidence 4557777774 69999999999999999998754
No 317
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.26 E-value=40 Score=28.18 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=20.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|-| ||||...+|.-++.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999997 79999888876554
No 318
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=30.24 E-value=48 Score=32.92 Aligned_cols=32 Identities=41% Similarity=0.483 Sum_probs=28.1
Q ss_pred CCcEEEEecCC------ChhhHHHHHHHHHH-hcCCCcc
Q 021862 42 SIKILAVTGTN------GKSTVVTFVGQMLN-HLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT~------GKTTt~~ll~~iL~-~~g~~~~ 73 (306)
+.+.|.||+.+ |||||+-=|.+.|. ..|.++.
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~ 105 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTF 105 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceE
Confidence 56899999986 99999999999999 6888863
No 319
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=29.93 E-value=33 Score=31.05 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
...++++.|.| ||||+..+|.-++..
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56789999998 799999999988764
No 320
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=29.85 E-value=42 Score=26.38 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=14.5
Q ss_pred EEEecCC--ChhhHHHHHHHHH
Q 021862 46 LAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 46 I~VtGT~--GKTTt~~ll~~iL 65 (306)
|.++|.. ||||++..|...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 4445543 8999999988774
No 321
>PRK14528 adenylate kinase; Provisional
Probab=29.78 E-value=78 Score=26.24 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=19.2
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+.|.|+|. .||||.+..|.+-+ |+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~---~~~~ 29 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL---SIPQ 29 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCe
Confidence 46778887 48999999987665 4544
No 322
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=29.69 E-value=45 Score=29.19 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|+|-| ||||...+|.-++.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 366799999997 89999999987764
No 323
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=29.56 E-value=62 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=18.9
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
.++.++|.+ ||||....+..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 467777775 799999999988753
No 324
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=29.38 E-value=78 Score=28.06 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=14.3
Q ss_pred CCcEEEEecCC--ChhhHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFV 61 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll 61 (306)
....|.|+|.. ||||+...+
T Consensus 79 ~~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 44578899865 788887643
No 325
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=29.16 E-value=39 Score=27.94 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|+|-| ||||...+|..++.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999997 69998888876654
No 326
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=28.99 E-value=56 Score=28.01 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=19.1
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+|++||. .||||.+. .|++.|..+
T Consensus 2 ~iVGLTGgiatGKStVs~----~f~~~G~~v 28 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQ----VFKALGIPV 28 (225)
T ss_pred eEEEeecccccChHHHHH----HHHHcCCcE
Confidence 48999997 68998765 566778765
No 327
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=28.82 E-value=57 Score=27.40 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHh
Q 021862 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+++|.|.| ||||+...|..++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 78899998 799999999888753
No 328
>PRK10536 hypothetical protein; Provisional
Probab=28.76 E-value=1.1e+02 Score=27.30 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCC
Q 021862 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302 (306)
Q Consensus 267 ~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~ 302 (306)
..+.|+|.+.+-++.-++..+..+..+..+++.|+.
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~ 212 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDI 212 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCCh
Confidence 457788888888999999999999877788889984
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=28.59 E-value=1e+02 Score=27.91 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 33 DFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 33 ~~~~~~~~~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+++.+.. +....|.|+|.. ||||+.+.|-..+.+
T Consensus 123 ~~L~~~v-~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 123 DVLREAV-LARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3444444 344567788754 899998877666654
No 330
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=28.51 E-value=39 Score=32.47 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=28.1
Q ss_pred CCcEEEEecCC------ChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT~------GKTTt~~ll~~iL~~~g~~~ 72 (306)
+.+.|.||+-+ |||||+-=|.+.|...|.++
T Consensus 51 ~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~ 87 (554)
T COG2759 51 DGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKA 87 (554)
T ss_pred CceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchh
Confidence 57899999865 99999999999999999886
No 331
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=28.35 E-value=41 Score=28.61 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=20.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..++++.|-| ||||...+|..++.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 56789999998 79999999887765
No 332
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=28.20 E-value=64 Score=27.45 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.6
Q ss_pred cEEEEecCC--ChhhHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQM 64 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~i 64 (306)
.++++.|-| ||||+-.+|..+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 689999998 699998888754
No 333
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=28.18 E-value=68 Score=27.91 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTNG--KSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~G--KTTt~~ll~~iL~~ 67 (306)
+..+.+|.|-|| |||+...|..+|..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 346788999885 99999999999975
No 334
>PRK13975 thymidylate kinase; Provisional
Probab=28.18 E-value=65 Score=26.57 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=19.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHh
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNH 67 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~ 67 (306)
..|.|.|. .||||.+..|+.-|..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36788886 5899999999999864
No 335
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.02 E-value=74 Score=29.90 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH-hcC-CCcccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFVG 75 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~-~~g-~~~~~~ 75 (306)
+..+|++.|.+ |||||...|..-+. ..| .++++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 44577788876 69999999987654 445 456443
No 336
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=27.94 E-value=47 Score=27.53 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=22.0
Q ss_pred CCCcEEEEecCCC--hhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTNG--KSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~ll~~iL~~ 67 (306)
....+++|.|-|| |||...+|..++..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 3667999999885 99999998887764
No 337
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=27.90 E-value=58 Score=31.57 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=21.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..++++|-|+| ||||+...|+--|.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 677899999999 58998888877666
No 338
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=27.85 E-value=1e+02 Score=24.27 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=22.0
Q ss_pred HHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 35 AAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 35 ~~~~~~~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+.+.+ ....+|.+.|.. ||||.++.+...|.
T Consensus 15 l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 15 FAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44455 466799999975 68888877776653
No 339
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=27.74 E-value=44 Score=28.26 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356789999997 89998888886654
No 340
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=27.57 E-value=62 Score=30.67 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=18.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
-.+.|+|+|. .||||.+..|...+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678999984 68999998777643
No 341
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=27.51 E-value=44 Score=29.27 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=21.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999997 79999999887665
No 342
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.37 E-value=62 Score=26.88 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.3
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHH
Q 021862 42 SIKILAVTGTNG--KSTVVTFVGQM 64 (306)
Q Consensus 42 ~~~~I~VtGT~G--KTTt~~ll~~i 64 (306)
...+++|+|.|| |||...+|.-+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999986 88887777644
No 343
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.25 E-value=1.2e+02 Score=29.93 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=38.1
Q ss_pred CHHHHHHHhhc--CCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc--CCCcEEEEECC
Q 021862 241 DVEALNSTIEI--LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL--KGHKCVILLGG 301 (306)
Q Consensus 241 ~~~~i~~~l~~--~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~--~~~~~i~v~G~ 301 (306)
..++|++-+++ |.|.++|..++ |||..|.=+..+..+.|+.+ |...+++||--
T Consensus 100 gVddiR~i~e~v~y~P~~~ryKVy--------iIDEvHMLS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 100 GVDDIREIIEKVNYAPSEGRYKVY--------IIDEVHMLSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred ChHHHHHHHHHhccCCccccceEE--------EEecHHhhhHHHHHHHhcccccCccCeEEEEec
Confidence 44555555544 66777777665 78877777999999999998 45678888754
No 344
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=26.87 E-value=45 Score=27.93 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|.| ||||...+|..++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 69988888776554
No 345
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=26.86 E-value=62 Score=28.52 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 356789999986 89999999998775
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.73 E-value=88 Score=30.00 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=25.1
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH-HhcCCCccccc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQML-NHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL-~~~g~~~~~~g 76 (306)
..+|+++|. .|||||+.-|..-+ ...|.++.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 457888876 47999999998654 56788876444
No 347
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.71 E-value=41 Score=28.55 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=19.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|-| ||||...+|.-++.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999987 59998888776554
No 348
>PRK00023 cmk cytidylate kinase; Provisional
Probab=26.68 E-value=72 Score=27.49 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=19.0
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+|+|+|.. ||||++.+|+.-|.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999874 89999999887664
No 349
>PRK06851 hypothetical protein; Provisional
Probab=26.64 E-value=82 Score=29.54 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=26.7
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~ 72 (306)
..+++.++| -.||||+..-+...+.+.|+++
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~V 61 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDV 61 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 456899999 5689999999999999889887
No 350
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=26.60 E-value=81 Score=25.66 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=18.2
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
++|.++|. .||||.+..|...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46777774 689999999988764
No 351
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=26.57 E-value=59 Score=27.77 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=20.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|.| ||||...+|..++.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 356799999987 69998888876654
No 352
>PRK10908 cell division protein FtsE; Provisional
Probab=26.55 E-value=69 Score=27.18 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 89999998876654
No 353
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.50 E-value=51 Score=28.32 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|+|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56799999997 69999998887664
No 354
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=26.49 E-value=69 Score=24.89 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=21.7
Q ss_pred EEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 46 I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+.|+|. .|||+.+..+..-+...|.++...+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 445554 3799999988888877776665443
No 355
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=26.42 E-value=69 Score=25.27 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|.| ||||...++..++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356789999997 78888888766554
No 356
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=26.33 E-value=48 Score=27.70 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|-| ||||...+|.-++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999997 69998888876654
No 357
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=26.18 E-value=78 Score=31.13 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=21.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+|+|.|.. ||||.+..|+.-|.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999975 79999999998883
No 358
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=26.01 E-value=47 Score=28.61 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=20.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++++|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999998 79998888887664
No 359
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=25.99 E-value=60 Score=33.50 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=23.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+++.+| -||||+...+..++++.|+++...
T Consensus 373 l~G~aG-TGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 373 VVGRAG-TGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred EEecCC-CCHHHHHHHHHHHHHhCCCeEEEE
Confidence 445555 489999999999999999887543
No 360
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=25.75 E-value=49 Score=27.83 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=20.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999987 69998888776654
No 361
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=25.61 E-value=52 Score=28.02 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|-| ||||...+|.-++.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 366799999997 69998888877664
No 362
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.48 E-value=1.9e+02 Score=27.47 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=55.9
Q ss_pred chHHH-HHHhcCCeeeehHHHH---HhhCCCCCcEEEEecC-CChhhHH--HHHHHHHHhcCCCcccccCCChhhhhhhh
Q 021862 15 ATGLA-CLLQSGKRVMSELDFA---AQVIPRSIKILAVTGT-NGKSTVV--TFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87 (306)
Q Consensus 15 ~p~~~-~~~~~~~~~l~~~~~~---~~~~~~~~~~I~VtGT-~GKTTt~--~ll~~iL~~~g~~~~~~g~~g~~~~~~~~ 87 (306)
+|++. .+++.+.+..+.++.- ..+ +...+|+.+=| .|||-+= -.+.++|++.-.-..+.=+-+..+..-.-
T Consensus 69 ~~~L~~ac~~l~~~~PT~IQ~~aiP~~L--~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~ 146 (476)
T KOG0330|consen 69 HPELLEACQELGWKKPTKIQSEAIPVAL--GGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIA 146 (476)
T ss_pred CHHHHHHHHHhCcCCCchhhhhhcchhh--CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHH
Confidence 46664 4566666655555432 222 24445555443 4887653 34666666432211111111111111100
Q ss_pred ccccCCCCCCCCcEEEEEecccccccCCce-ecccEEEEec-CChhhhhcc
Q 021862 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLN-LTPDHLERH 136 (306)
Q Consensus 88 ~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~-~~p~i~viTn-i~~dH~~~~ 136 (306)
+........-+..+++++-|..-....... -+|++.|-|. --+||++.-
T Consensus 147 e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T 197 (476)
T KOG0330|consen 147 EQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT 197 (476)
T ss_pred HHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc
Confidence 000011123355678888886543333222 3799966554 235999843
No 363
>PRK07078 hypothetical protein; Validated
Probab=25.48 E-value=48 Score=34.23 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.9
Q ss_pred ecCCChhhHHHHHHHHHHhcC
Q 021862 49 TGTNGKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g 69 (306)
+|.|||||...+|..+|-+..
T Consensus 499 ~G~NGKSt~l~~l~~llG~ya 519 (759)
T PRK07078 499 TGANGKSVFVNTLATILGDYA 519 (759)
T ss_pred CCCCCchHHHHHHHHHhhhhh
Confidence 799999999999999998743
No 364
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.44 E-value=48 Score=29.41 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=21.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
...+++|.|.| ||||...+|.-++..
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56799999998 799999999877653
No 365
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.35 E-value=51 Score=29.32 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
.+..+++|.|-| ||||...+|.-++..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEA 59 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 366799999997 899999999887753
No 366
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=25.21 E-value=77 Score=26.94 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=20.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
....+++|+|-| ||||...+|.-++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999997 6999999988777
No 367
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=25.21 E-value=53 Score=30.73 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=17.6
Q ss_pred EEEecCC--ChhhHHHHHHHHHHhc
Q 021862 46 LAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 46 I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
+.|.|.. |||.|+.++..-|.+.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhh
Confidence 4454543 8999999999999875
No 368
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=25.19 E-value=67 Score=27.94 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=22.0
Q ss_pred EEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 46 I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
|.++| ..||||.+..|..-|...|.++.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~ 32 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVII 32 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEE
Confidence 34444 358999999999999988877643
No 369
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=25.14 E-value=85 Score=25.71 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 46 LAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 46 I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
|.+||-. ||||...-+-+.|+..|.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 6788874 79999988888888877765
No 370
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=25.11 E-value=52 Score=30.57 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.7
Q ss_pred CChhhHHHHHHHHHHhcCCCc
Q 021862 52 NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 52 ~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+||||.++.|..+|.+.|...
T Consensus 65 HGKTTLTaAITkila~~g~A~ 85 (449)
T KOG0460|consen 65 HGKTTLTAAITKILAEKGGAK 85 (449)
T ss_pred CCchhHHHHHHHHHHhccccc
Confidence 899999999999999987643
No 371
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=25.03 E-value=52 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.8
Q ss_pred CChhhHHHHHHHHHHhcCCCccc
Q 021862 52 NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 52 ~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.||||-++-+++.+...|+++.+
T Consensus 7 SGKTT~~~~~~~~~~~~~~~~~~ 29 (238)
T PF03029_consen 7 SGKTTFCKGLSEWLESNGRDVYI 29 (238)
T ss_dssp SSHHHHHHHHHHHHTTT-S-EEE
T ss_pred CCHHHHHHHHHHHHHhccCCceE
Confidence 59999999999999999988754
No 372
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=25.01 E-value=50 Score=28.31 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|+|.| ||||...+|.-++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999997 79999988887765
No 373
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=24.91 E-value=79 Score=26.66 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=19.3
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
.+++|.|.| ||||....|...|..
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G 48 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTG 48 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 489999998 699988888777653
No 374
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=24.63 E-value=66 Score=26.11 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.8
Q ss_pred cEEEEecCC--ChhhHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
++|+|.|.+ ||||.+..|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578888887 6999877776644
No 375
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.47 E-value=80 Score=26.48 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=20.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|-| ||||...+|.-++.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366789999987 79999888886554
No 376
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=24.47 E-value=60 Score=27.24 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999987 69998888876654
No 377
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.44 E-value=80 Score=26.71 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999997 79999999886654
No 378
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=24.24 E-value=58 Score=28.01 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=20.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 356799999987 79998888876654
No 379
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.18 E-value=55 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=19.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|.| ||||...+|.-++.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 58887777776554
No 380
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=24.10 E-value=77 Score=25.29 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=16.5
Q ss_pred EEEEecCC--ChhhHHHHHHHHH
Q 021862 45 ILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+|.|+|.. ||||++..++.-|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 67888874 7999998887755
No 381
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.08 E-value=66 Score=27.51 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 56799999997 79999999887765
No 382
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=24.03 E-value=82 Score=26.03 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=15.8
Q ss_pred CCCcEEEEecCCC--hhhHHHHH
Q 021862 41 RSIKILAVTGTNG--KSTVVTFV 61 (306)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~ll 61 (306)
....+++|+|.|| |||..+++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 3567999999985 77776654
No 383
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=23.97 E-value=54 Score=27.65 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|+|-| ||||...+|.-++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999998 59998888887665
No 384
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=23.88 E-value=77 Score=27.23 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=20.7
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
..+++|.|-| ||||+..+|..+|..
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~ 49 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSD 49 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3588999998 799999999987753
No 385
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=23.72 E-value=56 Score=28.81 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=15.3
Q ss_pred cEEEEecCCChhhHHHHHHHHH
Q 021862 44 KILAVTGTNGKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT~GKTTt~~ll~~iL 65 (306)
-+++-+|| |||+.+..+++.+
T Consensus 25 LL~G~~Gt-GKT~lA~~la~~l 45 (262)
T TIGR02640 25 HLRGPAGT-GKTTLAMHVARKR 45 (262)
T ss_pred EEEcCCCC-CHHHHHHHHHHHh
Confidence 34455554 8999999998755
No 386
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.70 E-value=67 Score=27.85 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|-| ||||...+|.-++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 56789999997 68888888887664
No 387
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.62 E-value=59 Score=27.86 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+..+++|+|-| ||||...+|..++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56799999997 899999988877653
No 388
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=23.56 E-value=59 Score=29.51 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=20.4
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHH
Q 021862 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~ll~~iL 65 (306)
++...|.++| -.||||++.+|+..|
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4667899998 468999999988766
No 389
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=23.52 E-value=49 Score=30.51 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=22.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
.+..+++|.|-| ||||...+|.-++..
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 366799999997 899999999887763
No 390
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=23.48 E-value=64 Score=27.24 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=19.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|+|.| ||||...+|.-++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56789999998 69988888876554
No 391
>PRK13946 shikimate kinase; Provisional
Probab=23.43 E-value=89 Score=25.76 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=17.9
Q ss_pred cEEEEec--CCChhhHHHHHHHHH
Q 021862 44 KILAVTG--TNGKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtG--T~GKTTt~~ll~~iL 65 (306)
+.|.++| -.||||++..|+.-|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 4577777 458999999999888
No 392
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.38 E-value=1.2e+02 Score=27.07 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=28.0
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCCcccccC
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
+...|++.| ..||||+...+...+...+.+++....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~ 111 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 111 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 446888886 568999999999988887877765444
No 393
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=23.36 E-value=80 Score=32.40 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.7
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+|+|+|+. ||||++..|+..|.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~ 26 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG 26 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 379999986 79999999998874
No 394
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=23.29 E-value=89 Score=26.80 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=18.6
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+|+|+|.. ||||++.+|+.-|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999875 79999999887654
No 395
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=23.28 E-value=85 Score=27.37 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56789999987 69999998887665
No 396
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=23.24 E-value=7.4e+02 Score=24.64 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=49.5
Q ss_pred EEEEecCCChh--hHHHHHHHHHHhcCCCcccccCCChhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccE
Q 021862 45 ILAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122 (306)
Q Consensus 45 ~I~VtGT~GKT--Tt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i 122 (306)
.|-++|.-|-+ |+..+|..++...|+.+...-++|.-. ....-.+-+=+|...+.... -+||+
T Consensus 3 ~I~i~G~GGqGvvtag~iLa~aa~~~G~~v~~~~~ygse~-------------RGG~~~s~vris~~pI~sp~--~~~Di 67 (562)
T TIGR03710 3 SIRIGGAAGDGIQTAGEILAKALARAGYYVFTYRDYPSRI-------------RGGHSYFQIRISDEPVRSPG--DRVDV 67 (562)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCCEEEeecCChhh-------------cCCeeEEEEEEcCCcCCCCC--CCCcE
Confidence 35666666665 455677778888898875444444221 11222233334433332221 46788
Q ss_pred EEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCC
Q 021862 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (306)
Q Consensus 123 ~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~d 164 (306)
.+..+- +.+.. ....++++|++|+|.+
T Consensus 68 lval~~-----------~~~~~----~~~~lk~gg~vI~ns~ 94 (562)
T TIGR03710 68 LVALDP-----------ETLEE----HLDELRPGGIIIYDSD 94 (562)
T ss_pred EEEcCH-----------HHHHH----HhcccCCCeEEEEECC
Confidence 887753 22211 2344678999999965
No 397
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=23.22 E-value=1.2e+02 Score=28.40 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=21.6
Q ss_pred CCcEEEEec-CC-ChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTG-TN-GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtG-T~-GKTTt~~ll~~iL~~~g~~~ 72 (306)
+.|.+-|.| |. ||||.+++|-.-.-..|++.
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 456555555 55 99999998766555558875
No 398
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=23.20 E-value=77 Score=26.52 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|-| ||||...+|.-++.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 356799999997 89999988877654
No 399
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.20 E-value=62 Score=25.74 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=19.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|.| ||||...+|.-++.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55799999997 69988888876654
No 400
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=23.14 E-value=59 Score=27.88 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|.| ||||...+|.-++.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55689999987 69998888876654
No 401
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=23.13 E-value=63 Score=27.10 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999997 79998888876664
No 402
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=23.02 E-value=87 Score=26.85 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=20.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|-| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 366799999998 79998888876654
No 403
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=23.01 E-value=89 Score=25.15 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
.+..+++|.|-| ||||...+|.-++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 366799999997 799999998876653
No 404
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.90 E-value=66 Score=27.50 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
....+++|+|-| ||||...+|..++..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 356789999987 699988888776653
No 405
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.90 E-value=65 Score=27.77 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=20.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366789999997 79998888876654
No 406
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=22.80 E-value=1.1e+02 Score=28.30 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.4
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTNG--KSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~G--KTTt~~ll~~iL~ 66 (306)
....|.|+|..| ||||.+.+..-+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 456899999876 9999986555443
No 407
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=22.69 E-value=92 Score=25.98 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.1
Q ss_pred CCCcEEEEecCCC--hhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTNG--KSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~ll~~iL~ 66 (306)
.+..+++|+|-|| |||...++.-++.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 3667999999985 8888888766654
No 408
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=22.68 E-value=81 Score=27.85 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|..++.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 356799999986 69999999998875
No 409
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.53 E-value=94 Score=27.11 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|.| ||||...+|.-++.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 56789999987 79999999988775
No 410
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=22.51 E-value=87 Score=26.93 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|+|-| ||||...+|.-++.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56799999997 69999999876654
No 411
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=22.49 E-value=63 Score=27.55 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999987 69998888876654
No 412
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=22.37 E-value=63 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=20.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356789999987 79998888876654
No 413
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=22.37 E-value=73 Score=27.31 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+..+++|.|-| ||||...+|.-++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 66789999997 688888888877653
No 414
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.35 E-value=62 Score=27.93 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=20.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|-| ||||...+|.-++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999987 79998888886654
No 415
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=22.35 E-value=49 Score=28.06 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.7
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
..++++.|-| ||||+...|...|
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeE
Confidence 3488899988 6999888886544
No 416
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=22.32 E-value=96 Score=25.28 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56789999987 69998888876654
No 417
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.31 E-value=1.4e+02 Score=26.80 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=19.8
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTG--TNGKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~ll~~iL~~ 67 (306)
....++++.| |.||||+..+..++.-.
T Consensus 191 ~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~ 219 (286)
T PF06048_consen 191 VEGFGFHLYGQSSSGKTTALQLAASVWGN 219 (286)
T ss_pred CCceEEEEEeCCCCCHHHHHHHhhhhCcC
Confidence 3456888888 56899988887776554
No 418
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=22.30 E-value=41 Score=33.20 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.3
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHH
Q 021862 41 RSIKILAVTG--TNGKSTVVTFVGQM 64 (306)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~ll~~i 64 (306)
..+|.|.|.| |.||||+..|+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh
Confidence 4678888888 78999999999864
No 419
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=22.21 E-value=59 Score=27.87 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=20.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|+|-| ||||...+|.-++.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999997 69999988886654
No 420
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=22.19 E-value=67 Score=27.38 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|.| ||||...+|..++.
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999986 69998888886654
No 421
>PRK14530 adenylate kinase; Provisional
Probab=22.13 E-value=98 Score=26.18 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.2
Q ss_pred cEEEEecCC--ChhhHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+.|.|.|.. ||||.+..|+..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 357777764 7999999998776
No 422
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=22.10 E-value=97 Score=30.22 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=14.1
Q ss_pred CCcEEEEecCC--ChhhHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTF 60 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~l 60 (306)
..-+|.|||-. |||||.+.
T Consensus 241 ~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 34578899865 79998873
No 423
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=22.08 E-value=70 Score=28.09 Aligned_cols=27 Identities=22% Similarity=0.549 Sum_probs=20.2
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g 69 (306)
...+.+.|-. ||||+++.++..|.+.|
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3445566653 89999999999997654
No 424
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=22.08 E-value=1.6e+02 Score=25.36 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=25.0
Q ss_pred CCcEEEEecCC--ChhhHH-HHHHHHHHhcCCCcccccC
Q 021862 42 SIKILAVTGTN--GKSTVV-TFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~-~ll~~iL~~~g~~~~~~g~ 77 (306)
...++.|+|.+ ||||.+ .++...++ .|.++...+.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~ 60 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVST 60 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeC
Confidence 45599999996 799995 77777665 4666654443
No 425
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=22.07 E-value=2.6e+02 Score=21.67 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCC
Q 021862 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292 (306)
Q Consensus 239 g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~ 292 (306)
|-..++|.++++++.. ..+++.|+.|- ...|...+.+++.+..
T Consensus 42 gt~~~~I~~ai~~~~~----------~~dgVlvl~DL-Ggs~~n~e~a~~~l~~ 84 (125)
T TIGR02364 42 GTSPDKIIEAIEKADN----------EADGVLIFYDL-GSAVMNAEMAVELLED 84 (125)
T ss_pred cchHHHHHHHHHHhcC----------CCCCEEEEEcC-CCcHhHHHHHHHHhcc
Confidence 3456777777777632 25678999998 9999888888888763
No 426
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=22.07 E-value=69 Score=26.23 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=21.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
.+..+++|.|-| ||||...+|.-++..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 366789999987 799988888877653
No 427
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=22.02 E-value=92 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
.+..+++|.|.| ||||...+|.-++
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999997 7999888887666
No 428
>PRK12378 hypothetical protein; Provisional
Probab=21.99 E-value=3.9e+02 Score=23.34 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC------eeeEEeeccCCEEEEEcCCCCcHHHHHHHHh
Q 021862 227 AVAALSVLGLDIGVDVEALNSTIEILRTPPH------RMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288 (306)
Q Consensus 227 l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~g------R~e~~~~~~~~~~ii~D~~~~n~~s~~~al~ 288 (306)
..|+ .-|...++|.+.|.++|++-.+..+ +.|-. ..+|+.||.++.-.|..-...-++
T Consensus 48 r~aI--~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgy--gPgGvaiiVe~lTDN~nRt~~~vr 111 (235)
T PRK12378 48 RFVI--ERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGF--GPNGVMVIVECLTDNVNRTVANVR 111 (235)
T ss_pred HHHH--HHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEE--cCCCcEEEEEECCCCHHHHHHHHH
Confidence 3445 7788889999999999998664322 33443 467888888874445554444444
No 429
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=21.95 E-value=1.2e+02 Score=25.76 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHH--HHHhcCCC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQ--MLNHLGIE 71 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~--iL~~~g~~ 71 (306)
+..++.|||.| ||||..+.+.. +|.+.|.-
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~ 61 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF 61 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 44789999997 89998887754 44455543
No 430
>PRK13976 thymidylate kinase; Provisional
Probab=21.95 E-value=86 Score=26.69 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEecC--CChhhHHHHHHHHHHhc-C-CCcc
Q 021862 46 LAVTGT--NGKSTVVTFVGQMLNHL-G-IEAF 73 (306)
Q Consensus 46 I~VtGT--~GKTTt~~ll~~iL~~~-g-~~~~ 73 (306)
|+|-|- .||||.+.+|..-|+.. | .++.
T Consensus 3 Iv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~ 34 (209)
T PRK13976 3 ITFEGIDGSGKTTQSRLLAEYLSDIYGENNVV 34 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcceE
Confidence 444443 59999999999999986 5 4553
No 431
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=21.87 E-value=65 Score=25.84 Aligned_cols=20 Identities=35% Similarity=0.399 Sum_probs=16.2
Q ss_pred CChhhHHHHHHHHHHhcCCC
Q 021862 52 NGKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 52 ~GKTTt~~ll~~iL~~~g~~ 71 (306)
.||||+..+|+..|.-...+
T Consensus 3 sGKStvg~~lA~~L~~~fiD 22 (158)
T PF01202_consen 3 SGKSTVGKLLAKRLGRPFID 22 (158)
T ss_dssp SSHHHHHHHHHHHHTSEEEE
T ss_pred CcHHHHHHHHHHHhCCCccc
Confidence 59999999999999854433
No 432
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.86 E-value=67 Score=26.98 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=20.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|-| ||||...+|..++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 68888888776554
No 433
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.82 E-value=78 Score=25.64 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=21.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
.+..+++|.|-| ||||..+++.-++..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 356799999987 699988888877653
No 434
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=21.75 E-value=64 Score=27.11 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356789999987 69998888887664
No 435
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=21.67 E-value=60 Score=29.24 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....++++.|-| ||||+..+|.-++.
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999987 69999999887765
No 436
>PRK00110 hypothetical protein; Validated
Probab=21.66 E-value=3.1e+02 Score=24.15 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcCCCC-C------CeeeEEeeccCCEEEEEcCCCCcHHHHHHHHh
Q 021862 227 AVAALSVLGLDIGVDVEALNSTIEILRTP-P------HRMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288 (306)
Q Consensus 227 l~A~~~a~~~~lg~~~~~i~~~l~~~~~~-~------gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~ 288 (306)
..|+ .-|...++|.+.|.++|++..+. . -+.|-. ..+|+.||.++.-.|..-...-++
T Consensus 50 r~aI--~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~--gP~GvaiiVe~lTDN~nRt~~~vR 114 (245)
T PRK00110 50 RLAI--DKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGY--GPGGVAIIVEALTDNRNRTAAEVR 114 (245)
T ss_pred HHHH--HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCCeEEEEEEecCCHHHHHHHHH
Confidence 4455 77888899999999999987652 1 233444 467888888874445554444444
No 437
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=21.65 E-value=96 Score=25.98 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999987 79998888876654
No 438
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=21.61 E-value=79 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=19.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|.| ||||...+|.-++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 56789999997 68888888776544
No 439
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=21.60 E-value=61 Score=27.74 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=19.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 56789999997 69998888876554
No 440
>PRK04182 cytidylate kinase; Provisional
Probab=21.55 E-value=91 Score=25.07 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=16.7
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL 65 (306)
+|.|+|. .||||.+..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 5777776 47999999987765
No 441
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=21.44 E-value=1.9e+02 Score=25.16 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcCCCC--C-----CeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhc
Q 021862 227 AVAALSVLGLDIGVDVEALNSTIEILRTP--P-----HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (306)
Q Consensus 227 l~A~~~a~~~~lg~~~~~i~~~l~~~~~~--~-----gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~ 289 (306)
..|+ ..|...++|.+.|..+|+...+- . -++|.. ..+|+.+|.++.-.|..-...-++.
T Consensus 46 ~~ai--~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~--gP~Gvaiive~lTDN~nRt~~~ir~ 111 (234)
T PF01709_consen 46 RSAI--EKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGY--GPGGVAIIVECLTDNKNRTVSDIRS 111 (234)
T ss_dssp HHHH--HHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEE--ETTTEEEEEEEEES-HHHHHHHHHH
T ss_pred HHHH--HHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEE--cCCCcEEEEEEeCCCHhHHHHHHHH
Confidence 4455 77888999999999999987763 1 255555 4688988888855566655555554
No 442
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=21.39 E-value=1e+02 Score=25.56 Aligned_cols=29 Identities=28% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+|.|+|- .||||.+.+|+..| |+++...|
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~vsaG 32 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLVSAG 32 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCceeecc
Confidence 4777775 57888888877655 56664444
No 443
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=21.39 E-value=92 Score=27.08 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.7
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+|+|||- .||||++.++ .+.|..+
T Consensus 2 iI~i~G~~gsGKstva~~~----~~~g~~~ 27 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFI----IENYNAV 27 (227)
T ss_pred EEEEeCCCCCCHHHHHHHH----HhcCCcE
Confidence 7899996 5899988876 4455444
No 444
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=21.36 E-value=65 Score=28.32 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=20.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 79998888877654
No 445
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=21.31 E-value=69 Score=27.10 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|..++.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999987 69998888876654
No 446
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=21.28 E-value=71 Score=26.38 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=21.7
Q ss_pred CCcEEEE--ecCCChhhHHHHHHHHHHhcCC
Q 021862 42 SIKILAV--TGTNGKSTVVTFVGQMLNHLGI 70 (306)
Q Consensus 42 ~~~~I~V--tGT~GKTTt~~ll~~iL~~~g~ 70 (306)
..++|.. .++.||||.+..++.+..+.-.
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwm 52 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWM 52 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchh
Confidence 3445555 4589999999999999887543
No 447
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=21.21 E-value=1.1e+02 Score=24.65 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=16.7
Q ss_pred EEEEecC--CChhhHHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.|.++|. .||||++..|+.-|.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566663 499999999998773
No 448
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.16 E-value=63 Score=27.68 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=20.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366789999998 59998888876654
No 449
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=21.13 E-value=92 Score=26.16 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=19.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|-| ||||...+|.-++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 366789999986 69998888765543
No 450
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=21.10 E-value=1e+02 Score=26.57 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|+|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999997 79998888876554
No 451
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.98 E-value=1.9e+02 Score=21.90 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=20.6
Q ss_pred cEEEEecCCCh-hhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGTNGK-STVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT~GK-TTt~~ll~~iL~~~g~~~~ 73 (306)
+.|+|-|.+-+ ++..+.+-+-|.+.|+++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEE
Confidence 46888885544 7788888888888887764
No 452
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.96 E-value=76 Score=26.34 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=19.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||..++|.-++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56689999987 58888887776654
No 453
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=20.96 E-value=3.9e+02 Score=20.78 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=34.2
Q ss_pred CCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEE
Q 021862 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298 (306)
Q Consensus 239 g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v 298 (306)
|-+.++|.++++++. + +++.++.|- ..+|-.+..+++.+.+.+.+.+
T Consensus 42 gt~~~~i~~ai~~~~-----------~-dGVlVltDL-Gssp~n~~~a~e~~~~~~~v~~ 88 (124)
T PRK14484 42 GTSFDQIQEAIEKNE-----------S-DGVLIFFDL-GSAEMNAEMAIEMLDGEKKIII 88 (124)
T ss_pred cchHHHHHHHHHhcC-----------c-CCeEEEEeC-CChHHHHHHHHHhcCCCCcEEE
Confidence 445677777777763 3 578899998 9999999999999873333333
No 454
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=20.94 E-value=92 Score=27.01 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=20.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|+|-| ||||...+|.-++.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 356789999987 79999988887653
No 455
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=20.92 E-value=66 Score=29.46 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|-| ||||+..+|.-++.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 366799999987 79999999988876
No 456
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.81 E-value=93 Score=27.34 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=20.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 356789999987 69998888887653
No 457
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=20.79 E-value=85 Score=26.70 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=22.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g 69 (306)
...+++|-|-| ||||.+.|+.-|..-.+
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTs 67 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCCC
Confidence 55688888876 69999999988877543
No 458
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.77 E-value=67 Score=27.06 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=19.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+ .+++|.|-| ||||...+|.-++.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 36 899999997 69998888876554
No 459
>PRK02496 adk adenylate kinase; Provisional
Probab=20.77 E-value=1.2e+02 Score=24.85 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=17.2
Q ss_pred EEEEecC--CChhhHHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.|.|+|. .||||.+..|+.-+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 4777777 489999999987763
No 460
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=20.72 E-value=93 Score=23.30 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=15.7
Q ss_pred EEecC--CChhhHHHHHHHHHH
Q 021862 47 AVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 47 ~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.+.|- .|||++++.+.+-|.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT
T ss_pred EEECcCCCCeeHHHHHHHhhcc
Confidence 45555 699999999988874
No 461
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=20.71 E-value=64 Score=29.04 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=21.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+..++++.|-| ||||+..+|.-++..
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56789999987 699999999887763
No 462
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=20.67 E-value=1e+02 Score=26.60 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=20.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|.| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 366799999987 68888888776654
No 463
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=20.63 E-value=1.3e+02 Score=25.41 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=16.2
Q ss_pred cEEEEecCCC--hhhHHHHHHHHHHh
Q 021862 44 KILAVTGTNG--KSTVVTFVGQMLNH 67 (306)
Q Consensus 44 ~~I~VtGT~G--KTTt~~ll~~iL~~ 67 (306)
..|+|+|-+| |||+...+...+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3688888876 77766666665554
No 464
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=20.60 E-value=1.1e+02 Score=26.49 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=22.6
Q ss_pred cEEEEec--CCChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+|+|=| ..||||++..++.-|.-..+.+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldT 35 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDT 35 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecc
Confidence 6888887 5799999999988776554444
No 465
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=20.60 E-value=1.1e+02 Score=35.19 Aligned_cols=52 Identities=29% Similarity=0.492 Sum_probs=0.0
Q ss_pred eehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhc-----------------CCCcccccCCChhh
Q 021862 29 MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL-----------------GIEAFVGGNLGNPL 82 (306)
Q Consensus 29 l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~-----------------g~~~~~~g~~g~~~ 82 (306)
|..+.+-.|.. ...-.|+=||| ||||+..+|+-+|... |++..-.++.|.|+
T Consensus 454 leql~~~Iq~n-ep~LLVGeTGt-GKTT~IQ~La~~l~~kltvin~sqqte~sd~lgGykpIn~~tl~lpl 522 (4600)
T COG5271 454 LEQLLWNIQNN-EPTLLVGETGT-GKTTMIQYLALKLHFKLTVINKSQQTEMSDDLGGYKPINGSTLGLPL 522 (4600)
T ss_pred HHHHHHHhccC-CceEEEecCCC-chhhHHHHHHHHhhhhheehhhhhhccchhhcCCcccCCCcccccch
No 466
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.59 E-value=1.2e+02 Score=29.06 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=18.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+..+|++.|.| |||||...|...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688888887 6999999887643
No 467
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=1.9e+02 Score=27.75 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=74.0
Q ss_pred CeeeehHHHHHhhCCC---CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccCCChhhhh-hhhccccCCCCCCCC
Q 021862 26 KRVMSELDFAAQVIPR---SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE-AAFHCIALPSSKPKF 99 (306)
Q Consensus 26 ~~~l~~~~~~~~~~~~---~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~-~~~~~~~~~~~~~~~ 99 (306)
.++-+-++.+.|.++. ..-.|.|.|-. ||||+.--+.+-|.+.+ ++.+.+--.++... ...+++.. ..+-
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~---~~~~ 148 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGL---PTNN 148 (456)
T ss_pred ccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCC---Cccc
Confidence 3444556667777742 23589999986 58888777777777777 66544433222221 12222211 1122
Q ss_pred cEEEEEecccccccCCceecccEEEEecCChhhhhc----cCCHHHHHHHHHHhhccccCCee
Q 021862 100 QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER----HKTMKNYALTKCHLFSHMVNTKL 158 (306)
Q Consensus 100 ~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~----~gt~e~~~~~k~~i~~~~~~~~~ 158 (306)
-+..-|.+...+...-...+|++.||=+|.-=|.+. -||..++.+.-.++.+..+..++
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i 211 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNI 211 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 245556664433222112689999999987544443 36888877777666665444443
No 468
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.46 E-value=1.2e+02 Score=30.14 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=23.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~ 70 (306)
+.+.|||.|+| ||||..++|-..+...|.
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d~sG~ 407 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFDYSGS 407 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccCCc
Confidence 56789999998 599999998888886654
No 469
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.32 E-value=62 Score=28.78 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh-cCCCc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~-~g~~~ 72 (306)
...+.+.-|-| |||||-+||-.+|.. .|.-.
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~ 60 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccCceEE
Confidence 56788999988 599999999999986 55433
No 470
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.24 E-value=84 Score=28.93 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=22.6
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
..+.+.|. .|||..+..+..-+...|++|..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y 216 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY 216 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 34555443 49999999998888888887743
No 471
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=20.19 E-value=1.4e+02 Score=24.23 Aligned_cols=32 Identities=16% Similarity=-0.041 Sum_probs=19.7
Q ss_pred EEEecCC--ChhhHHHHHHHHHHhcCCCcccccC
Q 021862 46 LAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 46 I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
+.|+|.. |||+.+.-+..-....|.++.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 5566664 6999776544433356777755543
No 472
>PRK12338 hypothetical protein; Provisional
Probab=20.19 E-value=1.1e+02 Score=28.21 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.1
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
+..+|.|+|+ .||||.+..|+.-|.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 3458999996 579999999888774
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=20.18 E-value=81 Score=26.01 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=15.7
Q ss_pred EEEEecCC--ChhhHHHHHHHHH
Q 021862 45 ILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL 65 (306)
.|.+.|-+ ||||+..+|...+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 56666654 7999999996654
No 474
>PRK13949 shikimate kinase; Provisional
Probab=20.14 E-value=1.1e+02 Score=24.85 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.6
Q ss_pred EEEEecC--CChhhHHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.|.|.|. .||||.+.+|+..|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 4677765 489999999998885
No 475
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.04 E-value=82 Score=27.25 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 56789999987 69998888887654
No 476
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.00 E-value=75 Score=27.74 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
....+++|.|-| ||||...+|.-++..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 366799999987 799999998877653
Done!