Query 021862
Match_columns 306
No_of_seqs 105 out of 1073
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 10:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk7_A UDP-N-acetylmuramoylala 100.0 7.2E-56 2.5E-60 421.9 30.4 285 3-305 74-359 (451)
2 2x5o_A UDP-N-acetylmuramoylala 100.0 1.2E-52 4.1E-57 398.4 27.6 278 4-304 67-348 (439)
3 4hv4_A UDP-N-acetylmuramate--L 100.0 3.3E-51 1.1E-55 393.5 27.5 281 4-302 84-385 (494)
4 3hn7_A UDP-N-acetylmuramate-L- 100.0 4E-50 1.4E-54 388.4 31.8 295 4-302 83-423 (524)
5 1gg4_A UDP-N-acetylmuramoylala 100.0 7.4E-50 2.5E-54 380.5 21.7 283 4-304 64-363 (452)
6 1p3d_A UDP-N-acetylmuramate--a 100.0 6.2E-49 2.1E-53 376.4 27.3 281 4-302 80-376 (475)
7 2am1_A SP protein, UDP-N-acety 100.0 5.6E-50 1.9E-54 381.7 18.9 278 5-304 66-359 (454)
8 2f00_A UDP-N-acetylmuramate--L 100.0 2E-48 6.8E-53 374.3 28.2 281 4-302 81-382 (491)
9 1j6u_A UDP-N-acetylmuramate-al 100.0 8.6E-47 3E-51 360.8 28.0 270 4-300 74-358 (469)
10 1e8c_A UDP-N-acetylmuramoylala 100.0 1.3E-46 4.5E-51 362.2 20.9 251 42-301 107-385 (498)
11 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 5.1E-46 1.7E-50 360.7 23.2 252 42-303 145-422 (535)
12 3eag_A UDP-N-acetylmuramate:L- 100.0 5.7E-45 1.9E-49 333.0 24.9 246 3-256 68-325 (326)
13 1jbw_A Folylpolyglutamate synt 100.0 2E-43 6.8E-48 334.2 18.1 249 41-304 37-345 (428)
14 2vos_A Folylpolyglutamate synt 100.0 1.5E-42 5.2E-47 332.5 22.7 269 26-304 44-384 (487)
15 1o5z_A Folylpolyglutamate synt 100.0 1.4E-42 4.8E-47 329.3 19.6 249 41-304 50-354 (442)
16 3nrs_A Dihydrofolate:folylpoly 100.0 6E-41 2E-45 317.7 21.8 261 28-304 34-356 (437)
17 1w78_A FOLC bifunctional prote 100.0 8.3E-40 2.8E-44 308.8 20.9 244 41-304 47-335 (422)
18 3mvn_A UDP-N-acetylmuramate:L- 99.0 4.5E-10 1.5E-14 91.7 5.3 58 242-301 11-72 (163)
19 1pjq_A CYSG, siroheme synthase 94.2 0.013 4.6E-07 55.0 1.5 64 4-68 75-146 (457)
20 3fwy_A Light-independent proto 93.2 0.074 2.5E-06 47.3 4.4 34 41-74 46-81 (314)
21 3of5_A Dethiobiotin synthetase 92.6 0.11 3.8E-06 43.9 4.4 34 41-74 2-38 (228)
22 3fgn_A Dethiobiotin synthetase 92.5 0.12 4E-06 44.5 4.4 40 35-74 18-60 (251)
23 4dzz_A Plasmid partitioning pr 91.8 0.14 4.9E-06 41.6 4.1 32 43-74 1-35 (206)
24 1xjc_A MOBB protein homolog; s 91.6 0.18 6E-06 40.6 4.4 35 42-76 3-39 (169)
25 3la6_A Tyrosine-protein kinase 90.8 0.31 1.1E-05 42.6 5.5 34 41-74 90-126 (286)
26 1byi_A Dethiobiotin synthase; 90.8 0.18 6.3E-06 41.7 3.9 31 44-74 2-35 (224)
27 3cio_A ETK, tyrosine-protein k 90.6 0.55 1.9E-05 41.2 6.9 35 41-75 102-139 (299)
28 3ea0_A ATPase, para family; al 89.6 0.28 9.4E-06 41.2 4.0 34 41-74 2-39 (245)
29 3bfv_A CAPA1, CAPB2, membrane 89.2 0.54 1.9E-05 40.6 5.7 34 41-74 80-116 (271)
30 1wcv_1 SOJ, segregation protei 89.0 0.29 1E-05 41.7 3.7 34 41-74 4-40 (257)
31 1g3q_A MIND ATPase, cell divis 88.8 0.37 1.3E-05 40.2 4.2 31 44-74 3-36 (237)
32 2ph1_A Nucleotide-binding prot 88.8 0.61 2.1E-05 39.8 5.6 34 41-74 16-52 (262)
33 3qxc_A Dethiobiotin synthetase 88.6 0.41 1.4E-05 40.8 4.3 33 42-74 20-55 (242)
34 1hyq_A MIND, cell division inh 86.6 0.54 1.9E-05 39.9 4.0 31 44-74 3-36 (263)
35 2xj4_A MIPZ; replication, cell 86.5 0.55 1.9E-05 40.7 4.0 31 44-74 5-38 (286)
36 1zu4_A FTSY; GTPase, signal re 86.3 0.64 2.2E-05 41.3 4.4 35 42-76 104-140 (320)
37 3q9l_A Septum site-determining 85.7 0.69 2.4E-05 39.0 4.2 31 44-74 3-36 (260)
38 2oze_A ORF delta'; para, walke 85.4 0.33 1.1E-05 42.2 2.0 26 49-74 45-70 (298)
39 1vma_A Cell division protein F 85.3 0.78 2.7E-05 40.5 4.4 35 42-76 103-139 (306)
40 3k9g_A PF-32 protein; ssgcid, 85.2 0.65 2.2E-05 39.6 3.8 33 41-74 25-60 (267)
41 1rz3_A Hypothetical protein rb 85.0 1.2 4.2E-05 36.2 5.2 33 41-73 20-54 (201)
42 3cwq_A Para family chromosome 84.1 0.85 2.9E-05 37.5 3.9 29 45-74 2-33 (209)
43 3fkq_A NTRC-like two-domain pr 83.5 0.9 3.1E-05 41.1 4.1 35 41-75 141-178 (373)
44 3c8u_A Fructokinase; YP_612366 82.0 1.5 5.1E-05 35.8 4.6 32 41-72 20-53 (208)
45 3ug7_A Arsenical pump-driving 81.6 1.3 4.6E-05 39.6 4.5 37 41-77 23-62 (349)
46 3end_A Light-independent proto 81.1 1.4 4.7E-05 38.4 4.2 34 41-74 39-74 (307)
47 2px0_A Flagellar biosynthesis 81.1 1.4 4.7E-05 38.6 4.3 35 42-76 104-141 (296)
48 2obn_A Hypothetical protein; s 80.9 1.4 4.8E-05 39.6 4.3 107 42-149 151-289 (349)
49 3pg5_A Uncharacterized protein 79.6 1 3.6E-05 40.5 3.0 32 43-74 1-35 (361)
50 1a7j_A Phosphoribulokinase; tr 79.6 1.4 4.7E-05 38.5 3.7 30 42-71 4-35 (290)
51 3kl4_A SRP54, signal recogniti 79.5 1.5 5.2E-05 40.6 4.1 34 43-76 97-132 (433)
52 2g0t_A Conserved hypothetical 79.2 1.6 5.6E-05 39.2 4.1 107 42-149 168-310 (350)
53 3zq6_A Putative arsenical pump 79.1 1.6 5.5E-05 38.6 4.0 34 44-77 14-50 (324)
54 3b9q_A Chloroplast SRP recepto 78.6 2.1 7.1E-05 37.6 4.6 36 42-77 99-136 (302)
55 3ez9_A Para; DNA binding, wing 78.6 1.1 3.8E-05 40.9 2.9 34 41-74 109-151 (403)
56 1np6_A Molybdopterin-guanine d 78.5 2.3 7.8E-05 34.1 4.5 33 42-74 5-39 (174)
57 3ez2_A Plasmid partition prote 78.2 1.9 6.5E-05 39.1 4.4 34 41-74 106-148 (398)
58 2woo_A ATPase GET3; tail-ancho 78.1 1.7 5.8E-05 38.6 3.9 34 44-77 19-55 (329)
59 2pez_A Bifunctional 3'-phospho 77.7 2.5 8.5E-05 33.4 4.5 31 42-72 4-36 (179)
60 2z0h_A DTMP kinase, thymidylat 77.2 2.2 7.4E-05 34.1 4.0 29 45-73 2-32 (197)
61 2f1r_A Molybdopterin-guanine d 76.6 1.9 6.4E-05 34.5 3.4 30 44-73 3-34 (171)
62 1nks_A Adenylate kinase; therm 75.9 2.4 8.3E-05 33.5 4.0 29 44-72 2-32 (194)
63 2yvu_A Probable adenylyl-sulfa 75.9 2.7 9.1E-05 33.4 4.2 31 42-72 12-44 (186)
64 1nn5_A Similar to deoxythymidy 75.8 2.8 9.5E-05 33.9 4.4 31 42-72 8-40 (215)
65 2og2_A Putative signal recogni 75.3 2.8 9.4E-05 37.8 4.5 36 42-77 156-193 (359)
66 3e70_C DPA, signal recognition 75.3 2.7 9.2E-05 37.4 4.4 35 42-76 128-164 (328)
67 3dm5_A SRP54, signal recogniti 75.2 2.4 8.3E-05 39.4 4.2 34 43-76 100-135 (443)
68 3asz_A Uridine kinase; cytidin 74.3 2.3 7.8E-05 34.5 3.5 25 42-66 5-31 (211)
69 1cp2_A CP2, nitrogenase iron p 74.2 1.8 6.3E-05 36.6 2.9 31 44-74 2-34 (269)
70 2jeo_A Uridine-cytidine kinase 73.8 2.6 8.9E-05 35.4 3.8 24 42-65 24-49 (245)
71 2vo1_A CTP synthase 1; pyrimid 73.4 3.5 0.00012 35.5 4.3 33 41-73 21-57 (295)
72 3uie_A Adenylyl-sulfate kinase 73.3 5.4 0.00019 32.1 5.5 31 41-71 23-55 (200)
73 2yhs_A FTSY, cell division pro 72.7 3.5 0.00012 38.9 4.6 35 42-76 292-328 (503)
74 2afh_E Nitrogenase iron protei 72.5 2.2 7.4E-05 36.8 3.0 32 43-74 2-35 (289)
75 2pbr_A DTMP kinase, thymidylat 72.2 3.6 0.00012 32.6 4.1 29 45-73 2-32 (195)
76 1rj9_A FTSY, signal recognitio 72.0 3.8 0.00013 35.9 4.5 36 42-77 101-138 (304)
77 2wwf_A Thymidilate kinase, put 72.0 3.5 0.00012 33.3 4.1 31 42-72 9-41 (212)
78 2woj_A ATPase GET3; tail-ancho 71.5 2.8 9.7E-05 37.6 3.6 34 44-77 18-56 (354)
79 1odf_A YGR205W, hypothetical 3 70.6 4.2 0.00014 35.4 4.4 29 41-69 29-59 (290)
80 3iqw_A Tail-anchored protein t 69.8 3.2 0.00011 37.0 3.5 30 50-79 25-54 (334)
81 2i3b_A HCR-ntpase, human cance 69.5 3.5 0.00012 33.4 3.4 25 45-69 3-29 (189)
82 3aez_A Pantothenate kinase; tr 69.4 4 0.00014 35.9 4.0 28 41-68 88-117 (312)
83 3kjh_A CO dehydrogenase/acetyl 69.0 1.6 5.4E-05 36.3 1.3 26 49-74 8-33 (254)
84 2if2_A Dephospho-COA kinase; a 68.8 2.8 9.5E-05 33.8 2.7 20 44-63 2-23 (204)
85 2p67_A LAO/AO transport system 68.5 4.4 0.00015 36.0 4.2 35 41-75 54-90 (341)
86 1kyq_A Met8P, siroheme biosynt 67.8 1.1 3.8E-05 38.8 0.1 62 5-67 110-183 (274)
87 2xxa_A Signal recognition part 66.4 5.3 0.00018 36.9 4.4 33 42-74 99-134 (433)
88 1sq5_A Pantothenate kinase; P- 66.4 4.3 0.00015 35.4 3.6 26 41-66 78-105 (308)
89 3tr0_A Guanylate kinase, GMP k 65.9 4.2 0.00014 32.6 3.2 24 42-65 6-31 (205)
90 1uj2_A Uridine-cytidine kinase 65.3 4.1 0.00014 34.3 3.2 26 42-67 21-48 (252)
91 1ls1_A Signal recognition part 65.3 5.8 0.0002 34.5 4.2 34 43-76 98-133 (295)
92 2qm8_A GTPase/ATPase; G protei 64.4 6.5 0.00022 34.9 4.4 36 41-76 53-90 (337)
93 1zuh_A Shikimate kinase; alpha 64.3 5.3 0.00018 31.0 3.5 25 42-66 6-32 (168)
94 1cke_A CK, MSSA, protein (cyti 63.7 6 0.00021 32.2 3.9 24 43-66 5-30 (227)
95 3ake_A Cytidylate kinase; CMP 63.3 5.4 0.00018 32.0 3.4 23 44-66 3-27 (208)
96 3p32_A Probable GTPase RV1496/ 63.3 10 0.00036 33.7 5.6 34 41-74 77-112 (355)
97 1j8m_F SRP54, signal recogniti 63.2 5.9 0.0002 34.5 3.9 34 43-76 98-133 (297)
98 2c5m_A CTP synthase; cytidine 63.1 7.6 0.00026 33.2 4.3 33 41-73 21-57 (294)
99 4eun_A Thermoresistant glucoki 62.9 6.3 0.00021 31.7 3.8 24 42-65 28-53 (200)
100 3tqc_A Pantothenate kinase; bi 62.7 5.8 0.0002 35.1 3.7 26 42-67 91-118 (321)
101 1jjv_A Dephospho-COA kinase; P 62.0 5 0.00017 32.3 3.0 20 44-63 3-24 (206)
102 3kb2_A SPBC2 prophage-derived 61.9 6.1 0.00021 30.4 3.4 23 44-66 2-26 (173)
103 1ye8_A Protein THEP1, hypothet 61.7 6.1 0.00021 31.5 3.4 22 45-66 2-25 (178)
104 3pzx_A Formate--tetrahydrofola 61.0 8 0.00027 36.4 4.4 34 41-74 55-94 (557)
105 1uf9_A TT1252 protein; P-loop, 60.4 6.2 0.00021 31.4 3.3 28 41-72 6-35 (203)
106 2j37_W Signal recognition part 60.1 7.2 0.00025 36.8 4.1 35 42-76 100-136 (504)
107 1m7g_A Adenylylsulfate kinase; 59.7 13 0.00045 30.0 5.2 32 41-72 23-57 (211)
108 2grj_A Dephospho-COA kinase; T 59.6 6.7 0.00023 31.7 3.4 23 43-65 12-36 (192)
109 3lnc_A Guanylate kinase, GMP k 58.2 5.6 0.00019 32.8 2.7 25 42-66 26-53 (231)
110 3a00_A Guanylate kinase, GMP k 57.5 4.8 0.00016 32.1 2.1 24 44-67 2-27 (186)
111 2j41_A Guanylate kinase; GMP, 57.4 5.7 0.0002 31.8 2.6 24 42-65 5-30 (207)
112 3ec2_A DNA replication protein 57.3 13 0.00044 29.1 4.7 31 42-72 37-70 (180)
113 1kag_A SKI, shikimate kinase I 57.2 5.8 0.0002 30.8 2.5 23 44-66 5-29 (173)
114 1kht_A Adenylate kinase; phosp 56.7 11 0.00039 29.4 4.3 27 44-70 4-32 (192)
115 2plr_A DTMP kinase, probable t 56.6 9.7 0.00033 30.4 3.9 27 43-69 4-32 (213)
116 2www_A Methylmalonic aciduria 55.2 12 0.00041 33.2 4.6 35 42-76 73-109 (349)
117 2ffh_A Protein (FFH); SRP54, s 55.1 10 0.00036 34.9 4.2 34 43-76 98-133 (425)
118 3a4m_A L-seryl-tRNA(SEC) kinas 55.0 12 0.00042 31.5 4.4 32 42-73 3-36 (260)
119 1xx6_A Thymidine kinase; NESG, 54.9 14 0.00048 29.9 4.5 34 42-75 7-42 (191)
120 4tmk_A Protein (thymidylate ki 54.9 12 0.00043 30.7 4.3 30 43-72 3-35 (213)
121 2eyu_A Twitching motility prot 54.7 10 0.00034 32.3 3.8 28 41-68 23-52 (261)
122 1ihu_A Arsenical pump-driving 54.7 11 0.00039 36.0 4.6 33 42-74 7-41 (589)
123 1e6c_A Shikimate kinase; phosp 54.3 8.4 0.00029 29.7 3.0 23 44-66 3-27 (173)
124 4edh_A DTMP kinase, thymidylat 53.8 14 0.00046 30.4 4.3 32 43-74 6-39 (213)
125 3io3_A DEHA2D07832P; chaperone 53.5 8.8 0.0003 34.3 3.3 37 43-79 18-58 (348)
126 3hjn_A DTMP kinase, thymidylat 53.4 8 0.00027 31.4 2.8 24 52-75 11-34 (197)
127 1y63_A LMAJ004144AAA protein; 53.0 10 0.00036 29.9 3.4 23 42-64 9-33 (184)
128 2w0m_A SSO2452; RECA, SSPF, un 52.1 13 0.00046 29.9 4.1 35 42-76 22-58 (235)
129 2pt5_A Shikimate kinase, SK; a 51.6 11 0.00039 28.8 3.4 22 45-66 2-25 (168)
130 3vaa_A Shikimate kinase, SK; s 51.2 13 0.00044 29.7 3.8 24 42-65 24-49 (199)
131 3t61_A Gluconokinase; PSI-biol 50.8 11 0.00037 30.2 3.2 24 42-65 17-42 (202)
132 1q3t_A Cytidylate kinase; nucl 50.7 13 0.00045 30.6 3.9 24 42-65 15-40 (236)
133 3tau_A Guanylate kinase, GMP k 49.6 13 0.00045 30.0 3.6 26 41-66 6-33 (208)
134 3ld9_A DTMP kinase, thymidylat 49.6 14 0.00049 30.7 3.8 34 41-74 19-55 (223)
135 2f6r_A COA synthase, bifunctio 49.3 13 0.00043 31.9 3.6 23 41-63 73-97 (281)
136 2qt1_A Nicotinamide riboside k 49.0 11 0.00039 30.2 3.1 25 41-65 19-45 (207)
137 4eaq_A DTMP kinase, thymidylat 48.7 16 0.00056 30.2 4.1 31 42-73 25-57 (229)
138 1vht_A Dephospho-COA kinase; s 48.6 14 0.00046 30.0 3.5 21 43-63 4-26 (218)
139 1znw_A Guanylate kinase, GMP k 48.4 11 0.00039 30.3 3.0 26 41-66 18-45 (207)
140 2v3c_C SRP54, signal recogniti 48.0 9.6 0.00033 35.1 2.7 34 43-76 99-134 (432)
141 1qf9_A UMP/CMP kinase, protein 47.1 14 0.00047 28.9 3.3 23 44-66 7-31 (194)
142 2b8t_A Thymidine kinase; deoxy 47.0 20 0.00069 29.7 4.4 34 42-75 11-46 (223)
143 2iyv_A Shikimate kinase, SK; t 46.8 11 0.00037 29.5 2.6 23 44-66 3-27 (184)
144 1lvg_A Guanylate kinase, GMP k 46.1 13 0.00043 29.9 2.9 24 43-66 4-29 (198)
145 1knq_A Gluconate kinase; ALFA/ 46.1 17 0.00059 28.1 3.7 24 42-65 7-32 (175)
146 3lv8_A DTMP kinase, thymidylat 45.9 20 0.00069 30.0 4.2 29 43-71 27-57 (236)
147 3igf_A ALL4481 protein; two-do 45.4 7.5 0.00026 35.2 1.5 28 50-77 11-38 (374)
148 2c95_A Adenylate kinase 1; tra 45.3 17 0.00059 28.5 3.6 24 42-65 8-33 (196)
149 3jvv_A Twitching mobility prot 45.0 15 0.0005 32.9 3.4 31 42-72 122-155 (356)
150 3do6_A Formate--tetrahydrofola 45.0 21 0.00071 33.4 4.3 33 41-73 41-79 (543)
151 1yrb_A ATP(GTP)binding protein 44.9 11 0.00039 31.3 2.5 34 42-76 13-48 (262)
152 1gtv_A TMK, thymidylate kinase 44.8 6 0.00021 31.9 0.7 28 45-72 2-31 (214)
153 1zak_A Adenylate kinase; ATP:A 44.8 10 0.00035 30.9 2.2 24 45-68 7-32 (222)
154 4e22_A Cytidylate kinase; P-lo 44.5 15 0.00053 30.7 3.3 25 42-66 26-52 (252)
155 2jaq_A Deoxyguanosine kinase; 44.2 17 0.00059 28.6 3.5 22 45-66 2-25 (205)
156 3nva_A CTP synthase; rossman f 43.8 22 0.00076 33.6 4.5 31 43-73 3-37 (535)
157 1cr0_A DNA primase/helicase; R 43.7 22 0.00075 30.3 4.3 36 41-76 33-71 (296)
158 4a0g_A Adenosylmethionine-8-am 43.2 15 0.00052 36.8 3.5 33 42-74 33-73 (831)
159 3v9p_A DTMP kinase, thymidylat 43.1 22 0.00076 29.5 4.0 32 42-73 24-61 (227)
160 1kgd_A CASK, peripheral plasma 42.5 17 0.00059 28.5 3.2 25 42-66 4-30 (180)
161 2vli_A Antibiotic resistance p 42.2 13 0.00043 29.0 2.3 25 42-66 4-30 (183)
162 1htw_A HI0065; nucleotide-bind 41.9 25 0.00085 27.3 4.0 25 41-65 31-57 (158)
163 1tev_A UMP-CMP kinase; ploop, 41.9 21 0.00071 27.9 3.6 22 44-65 4-27 (196)
164 4i1u_A Dephospho-COA kinase; s 41.6 20 0.00069 29.4 3.5 27 42-72 8-36 (210)
165 3lw7_A Adenylate kinase relate 41.1 19 0.00064 27.4 3.1 26 44-73 2-29 (179)
166 2bdt_A BH3686; alpha-beta prot 40.9 18 0.00061 28.4 3.0 20 44-63 3-24 (189)
167 2kjq_A DNAA-related protein; s 40.8 27 0.00094 26.6 4.0 30 43-72 36-67 (149)
168 4ehx_A Tetraacyldisaccharide 4 40.7 15 0.00052 32.2 2.8 29 42-70 35-67 (315)
169 2ewv_A Twitching motility prot 40.6 22 0.00074 31.9 3.8 28 41-68 134-163 (372)
170 2orw_A Thymidine kinase; TMTK, 40.4 25 0.00086 27.9 3.8 30 44-73 4-35 (184)
171 3kta_A Chromosome segregation 40.3 16 0.00056 28.4 2.7 23 45-67 28-52 (182)
172 1ukz_A Uridylate kinase; trans 40.2 20 0.00067 28.5 3.2 25 41-65 13-39 (203)
173 1p9r_A General secretion pathw 39.7 21 0.00072 32.7 3.6 32 41-72 165-198 (418)
174 1zp6_A Hypothetical protein AT 39.3 20 0.00068 28.1 3.1 23 42-64 8-32 (191)
175 2bbw_A Adenylate kinase 4, AK4 39.2 25 0.00085 29.1 3.8 24 42-65 26-51 (246)
176 2bwj_A Adenylate kinase 5; pho 39.1 22 0.00077 27.9 3.4 24 43-66 12-37 (199)
177 2v54_A DTMP kinase, thymidylat 38.8 24 0.00084 27.8 3.6 24 42-65 3-28 (204)
178 1qhx_A CPT, protein (chloramph 38.2 19 0.00066 27.8 2.8 23 44-66 4-28 (178)
179 2j9r_A Thymidine kinase; TK1, 38.1 36 0.0012 28.1 4.4 34 42-75 27-62 (214)
180 2gks_A Bifunctional SAT/APS ki 37.4 28 0.00096 33.0 4.2 31 42-72 371-403 (546)
181 3cm0_A Adenylate kinase; ATP-b 37.4 24 0.0008 27.5 3.2 22 44-65 5-28 (186)
182 2cdn_A Adenylate kinase; phosp 37.0 32 0.0011 27.2 4.0 24 42-65 19-44 (201)
183 2r8r_A Sensor protein; KDPD, P 36.9 23 0.00079 29.6 3.1 28 46-73 11-38 (228)
184 1m8p_A Sulfate adenylyltransfe 36.6 28 0.00097 33.2 4.1 31 42-72 395-428 (573)
185 1x6v_B Bifunctional 3'-phospho 35.7 33 0.0011 33.3 4.4 31 42-72 51-83 (630)
186 3trf_A Shikimate kinase, SK; a 34.8 32 0.0011 26.7 3.6 23 43-65 5-29 (185)
187 2rhm_A Putative kinase; P-loop 34.8 31 0.0011 26.9 3.5 24 42-65 4-29 (193)
188 1aky_A Adenylate kinase; ATP:A 34.3 34 0.0012 27.6 3.8 25 42-66 3-29 (220)
189 1s1m_A CTP synthase; CTP synth 33.8 35 0.0012 32.5 4.2 30 44-73 4-37 (545)
190 1via_A Shikimate kinase; struc 33.8 26 0.00088 27.1 2.9 23 44-66 5-29 (175)
191 3iij_A Coilin-interacting nucl 33.6 30 0.001 26.8 3.3 24 42-65 10-35 (180)
192 1vco_A CTP synthetase; tetrame 33.3 36 0.0012 32.4 4.2 30 44-73 13-46 (550)
193 1dek_A Deoxynucleoside monopho 32.7 30 0.001 29.0 3.2 26 44-72 2-29 (241)
194 3lfu_A DNA helicase II; SF1 he 32.0 27 0.00094 33.4 3.2 29 42-71 24-53 (647)
195 3nwj_A ATSK2; P loop, shikimat 31.1 31 0.0011 29.0 3.1 24 43-66 48-73 (250)
196 3upu_A ATP-dependent DNA helic 31.1 23 0.00078 32.6 2.4 34 45-79 50-84 (459)
197 1z6g_A Guanylate kinase; struc 30.8 26 0.00088 28.6 2.5 24 42-65 22-47 (218)
198 3dau_A Dihydrofolate reductase 30.5 15 0.00051 28.8 0.9 45 253-301 52-96 (159)
199 2yv5_A YJEQ protein; hydrolase 30.4 46 0.0016 28.7 4.2 32 32-66 156-189 (302)
200 2olj_A Amino acid ABC transpor 30.4 34 0.0012 29.0 3.2 26 41-66 48-75 (263)
201 2wsm_A Hydrogenase expression/ 30.0 41 0.0014 26.8 3.6 31 42-73 29-61 (221)
202 1nij_A Hypothetical protein YJ 29.5 25 0.00084 30.7 2.2 23 42-64 3-27 (318)
203 2v9p_A Replication protein E1; 28.3 51 0.0018 28.7 4.1 29 41-71 124-154 (305)
204 1s96_A Guanylate kinase, GMP k 28.0 39 0.0013 27.7 3.1 25 42-66 15-41 (219)
205 1b0u_A Histidine permease; ABC 27.8 40 0.0014 28.5 3.2 26 41-66 30-57 (262)
206 3b85_A Phosphate starvation-in 27.6 43 0.0015 27.2 3.3 25 42-67 21-47 (208)
207 2onk_A Molybdate/tungstate ABC 27.6 41 0.0014 28.0 3.2 25 41-66 23-49 (240)
208 3euj_A Chromosome partition pr 27.4 52 0.0018 30.7 4.1 25 44-68 30-56 (483)
209 2zu0_C Probable ATP-dependent 27.1 44 0.0015 28.2 3.4 25 41-65 44-70 (267)
210 3r20_A Cytidylate kinase; stru 26.9 51 0.0017 27.4 3.6 25 42-66 8-34 (233)
211 2yz2_A Putative ABC transporte 26.8 42 0.0014 28.4 3.2 26 41-66 31-58 (266)
212 2pcj_A ABC transporter, lipopr 26.7 38 0.0013 27.8 2.8 25 42-66 29-55 (224)
213 3tlx_A Adenylate kinase 2; str 26.7 57 0.002 26.9 4.0 24 42-65 28-53 (243)
214 1g8f_A Sulfate adenylyltransfe 26.3 45 0.0015 31.4 3.5 26 42-67 394-421 (511)
215 3hdt_A Putative kinase; struct 26.0 53 0.0018 27.0 3.6 25 42-66 13-39 (223)
216 2w58_A DNAI, primosome compone 25.9 66 0.0023 25.2 4.1 29 44-72 55-85 (202)
217 2h92_A Cytidylate kinase; ross 25.9 36 0.0012 27.3 2.5 22 44-65 4-27 (219)
218 3tq8_A Dihydrofolate reductase 25.8 30 0.001 27.7 1.9 41 253-301 53-98 (178)
219 1vpl_A ABC transporter, ATP-bi 25.6 46 0.0016 28.0 3.2 26 41-66 39-66 (256)
220 3fb4_A Adenylate kinase; psych 25.6 51 0.0017 26.2 3.4 21 45-65 2-24 (216)
221 2ehv_A Hypothetical protein PH 25.2 73 0.0025 25.7 4.4 22 42-63 29-52 (251)
222 3be4_A Adenylate kinase; malar 25.1 49 0.0017 26.6 3.2 22 44-65 6-29 (217)
223 2d2e_A SUFC protein; ABC-ATPas 24.8 49 0.0017 27.6 3.2 23 42-64 28-52 (250)
224 1mv5_A LMRA, multidrug resista 24.4 50 0.0017 27.4 3.2 26 41-66 26-53 (243)
225 1ji0_A ABC transporter; ATP bi 24.3 48 0.0016 27.5 3.0 25 42-66 31-57 (240)
226 1ly1_A Polynucleotide kinase; 24.2 52 0.0018 25.1 3.1 20 44-63 3-24 (181)
227 2nq2_C Hypothetical ABC transp 24.2 48 0.0016 27.8 3.0 25 42-66 30-56 (253)
228 1lw7_A Transcriptional regulat 24.2 41 0.0014 29.7 2.7 25 43-67 170-196 (365)
229 2ixe_A Antigen peptide transpo 24.0 50 0.0017 28.0 3.2 26 41-66 43-70 (271)
230 1ko7_A HPR kinase/phosphatase; 24.0 87 0.003 27.4 4.7 57 5-61 84-164 (314)
231 1ak2_A Adenylate kinase isoenz 24.0 68 0.0023 26.1 3.9 25 42-66 15-41 (233)
232 3out_A Glutamate racemase; str 23.9 1.7E+02 0.0059 24.7 6.5 46 25-72 94-139 (268)
233 2cbz_A Multidrug resistance-as 23.8 52 0.0018 27.2 3.2 26 41-66 29-56 (237)
234 1g6h_A High-affinity branched- 23.8 49 0.0017 27.7 3.0 25 42-66 32-58 (257)
235 2pjz_A Hypothetical protein ST 23.7 45 0.0015 28.2 2.8 23 43-65 30-54 (263)
236 2ze6_A Isopentenyl transferase 23.4 62 0.0021 26.9 3.6 22 44-65 2-25 (253)
237 4hlc_A DTMP kinase, thymidylat 23.4 39 0.0013 27.3 2.2 29 45-74 4-34 (205)
238 3e1s_A Exodeoxyribonuclease V, 23.3 70 0.0024 30.4 4.3 35 42-76 203-239 (574)
239 2ghi_A Transport protein; mult 23.2 54 0.0018 27.6 3.2 26 41-66 44-71 (260)
240 2ihy_A ABC transporter, ATP-bi 22.6 54 0.0018 28.0 3.1 25 42-66 46-72 (279)
241 3qks_A DNA double-strand break 22.4 66 0.0023 25.7 3.4 25 43-67 23-49 (203)
242 1sgw_A Putative ABC transporte 22.0 47 0.0016 27.1 2.5 25 42-66 34-60 (214)
243 4g1u_C Hemin import ATP-bindin 21.8 57 0.0019 27.6 3.0 26 42-67 36-63 (266)
244 3e2i_A Thymidine kinase; Zn-bi 21.6 93 0.0032 25.7 4.2 34 41-74 26-61 (219)
245 2qi9_C Vitamin B12 import ATP- 21.3 60 0.0021 27.1 3.1 25 42-66 25-51 (249)
246 3cr8_A Sulfate adenylyltranfer 21.3 65 0.0022 30.6 3.6 28 42-69 368-397 (552)
247 2vp4_A Deoxynucleoside kinase; 21.2 39 0.0013 27.6 1.8 23 42-64 19-43 (230)
248 2bbs_A Cystic fibrosis transme 21.1 57 0.002 28.0 2.9 26 41-66 62-89 (290)
249 4ag6_A VIRB4 ATPase, type IV s 21.0 48 0.0016 29.5 2.5 29 45-74 40-68 (392)
250 1ihu_A Arsenical pump-driving 20.8 55 0.0019 31.1 3.0 32 44-75 327-361 (589)
251 2dr3_A UPF0273 protein PH0284; 20.6 98 0.0034 24.8 4.3 34 42-76 22-58 (247)
252 2oap_1 GSPE-2, type II secreti 20.6 53 0.0018 30.9 2.8 25 42-66 259-285 (511)
253 2pze_A Cystic fibrosis transme 20.5 65 0.0022 26.4 3.1 25 42-66 33-59 (229)
254 1f2t_A RAD50 ABC-ATPase; DNA d 20.4 82 0.0028 23.8 3.4 25 43-67 23-49 (149)
No 1
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=7.2e-56 Score=421.86 Aligned_cols=285 Identities=24% Similarity=0.373 Sum_probs=244.4
Q ss_pred eecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhh
Q 021862 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (306)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~ 82 (306)
-++|+||+++++||++..|++++++++++++.+++.. +.++|+||||||||||++|++++|++.|.++.+.|++|.|+
T Consensus 74 d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~~ 151 (451)
T 3lk7_A 74 CYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPA 151 (451)
T ss_dssp EEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCH
T ss_pred CEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChhh
Confidence 3678999999999999999999999999999999887 45999999999999999999999999999999999999988
Q ss_pred hhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEe
Q 021862 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n 162 (306)
+.... ...+.|++|+|+|+++++.... ++|+++|||||++||+|+|||+|+|+++|.++++.++++|.+|+|
T Consensus 152 ~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n 223 (451)
T 3lk7_A 152 SEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLN 223 (451)
T ss_dssp HHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEE
T ss_pred hhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 75432 1346789999999998876654 899999999999999999999999999999999988889999999
Q ss_pred CCChhhHHHHhcccccEEEeccCCCe-eeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 021862 163 FGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (306)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~ 241 (306)
.|||.+..+.+....++++||...+. ..... ...+.+ .+. ..+..++++++|+||++|+++|+ +++..+|++
T Consensus 224 ~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~ 296 (451)
T 3lk7_A 224 FNQGISKELAKTTKATIVPFSTTEKVDGAYVQ--DKQLFY--KGE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGIS 296 (451)
T ss_dssp TTSHHHHHHHTTCSSEEEEEESSSCCSSEEEE--TTEEEE--TTE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTCC
T ss_pred CCcHHHHHHHhhcCCeEEEEccCCCcCCEEEE--CCEEEE--CCc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence 99999999888777888999876432 00000 112222 222 11223578999999999999999 899999999
Q ss_pred HHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECCCCCC
Q 021862 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKE 305 (306)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~~~~~ 305 (306)
++.|.++|++|+++|||||++. ..+++.+|+|+|+|||+|+.++++.++++|+++|+||++|+
T Consensus 297 ~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~ 359 (451)
T 3lk7_A 297 NQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRG 359 (451)
T ss_dssp HHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCS
T ss_pred HHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 9999999999999999999997 46789999998899999999999999866799999998763
No 2
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=1.2e-52 Score=398.44 Aligned_cols=278 Identities=27% Similarity=0.421 Sum_probs=233.8
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~ 83 (306)
++|++|++++++|++..|++++++++++++.+++.+ +.++|+||||||||||++|++++|++.|+++++.||+|.|++
T Consensus 67 ~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~~~ 144 (439)
T 2x5o_A 67 LIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPAL 144 (439)
T ss_dssp EEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCHH
T ss_pred EEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHHHH
Confidence 578999999999999999999999999999998887 589999999999999999999999999999999999998886
Q ss_pred hhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEEEe
Q 021862 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP 162 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V~n 162 (306)
... .++.|++|+|+|+++++.... ++|+++|||||++||+|+| +|+|+|+++|.++++. ++.+|+|
T Consensus 145 ~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~n 211 (439)
T 2x5o_A 145 MLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVN 211 (439)
T ss_dssp HHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEE
T ss_pred HHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEEe
Confidence 543 123589999999998887654 8999999999999999999 8999999999999873 6899999
Q ss_pred CCChhhHHHHhcccccEEEeccCCC-ee-eccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCC
Q 021862 163 FGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (306)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~ 240 (306)
.|||.+..+.+. ..++++||.... +. +..+ ...+.+. .+. ..+...+++++|+||++|+++|+ +++..+|+
T Consensus 212 ~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi 284 (439)
T 2x5o_A 212 ADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAGL 284 (439)
T ss_dssp TTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTTC
T ss_pred CCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHcCC
Confidence 999988766544 457788886431 11 1111 1122222 121 11112478999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCC-CcEEEEECCCCC
Q 021862 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK 304 (306)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~-~~~i~v~G~~~~ 304 (306)
+++.|.++|++|+++|||||++. ..+++++|+|+|+|||+|++.+++.++. +|+++|+|+++|
T Consensus 285 ~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k 348 (439)
T 2x5o_A 285 PRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348 (439)
T ss_dssp CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCT
T ss_pred CHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCC
Confidence 99999999999999999999996 4567999999889999999999999973 689999999877
No 3
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=3.3e-51 Score=393.51 Aligned_cols=281 Identities=17% Similarity=0.244 Sum_probs=227.5
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCC-cccccCCChhh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGNPL 82 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~-~~~~g~~g~~~ 82 (306)
++|+||+|+++||+++.|++++++++++++.+++.. +..++|+||||||||||++|++++|+++|++ +...|+.++.+
T Consensus 84 ~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~~ 162 (494)
T 4hv4_A 84 VVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAA 162 (494)
T ss_dssp EEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccccc
Confidence 678999999999999999999999999999998887 4568999999999999999999999999986 33333322222
Q ss_pred hhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEEE
Q 021862 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V~ 161 (306)
.... ...+.|++|+|+|+++..+. .++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+|+
T Consensus 163 g~~~--------~~~~~d~~VlE~~e~~~s~~--~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V~ 232 (494)
T 4hv4_A 163 GTHA--------RLGSSRYLIAEADESDASFL--HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVM 232 (494)
T ss_dssp TEEE--------ECCSSSEEEEECCCGGGGGG--GCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred cccc--------ccCCCcEEEEEccccccccc--cccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 1111 01357899999997654432 47999999999999999999 8999999999999998888899999
Q ss_pred eCCChhhHHHHhcccccEEEeccCCC--eeec---cccccceEEEecCCe-eeEEEeeccCCCChhHHHHHHHHHHHHHH
Q 021862 162 PFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVGV-VSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (306)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~N~l~A~~~a~~ 235 (306)
|.|||.+..+.+....++++||...+ +... .+.....+.+...+. ... ++++++|+||++|+++|+ +++
T Consensus 233 n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a 307 (494)
T 4hv4_A 233 CIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIE---VTLNAPGRHNALNAAAAV--AVA 307 (494)
T ss_dssp ETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEE---EEESSCSHHHHHHHHHHH--HHH
T ss_pred ECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEE---EEecCCcHHHHHHHHHHH--HHH
Confidence 99999999998877778899997543 2211 112223344433322 122 478999999999999999 899
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCeeeEEeecc---------CCEEEEEcCCCCcHHHHHHHHhcc----CCCcEEEEECCC
Q 021862 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQ 302 (306)
Q Consensus 236 ~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~---------~~~~ii~D~~~~n~~s~~~al~~~----~~~~~i~v~G~~ 302 (306)
..+|++.+.|.++|++|+|++||||++. .. +++.+|+|+ +|||.+++++++.+ +++|+++|+|+.
T Consensus 308 ~~lgi~~~~i~~~L~~f~g~~~R~e~v~-~~~~~~~~~~~~g~~vi~Dy-aHnp~~i~a~l~al~~~~~~~rii~V~g~~ 385 (494)
T 4hv4_A 308 TEEGIEDEDILRALVGFQGTGRRFDFLG-NFPLAPVNGKEGSAMLVDDY-GHHPTEVDATIKAARAGWPDKRIVMLFQPH 385 (494)
T ss_dssp HHHTCCHHHHHHHHHHCCCBTTSSEEEE-EEESHHHHSCSSEEEEEEEC-CCSHHHHHHHHHHHHHHCTTSEEEEEECCB
T ss_pred HHcCCCHHHHHHHHHhCCCCCCccEEee-eccccccccCCCCeEEEEeC-CCCHHHHHHHHHHHHhhcCCCeEEEEEcCC
Confidence 9999999999999999999999999996 33 479999995 99999999988865 356899999864
No 4
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=4e-50 Score=388.38 Aligned_cols=295 Identities=20% Similarity=0.248 Sum_probs=220.6
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc-cccCCC---
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLG--- 79 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~-~~g~~g--- 79 (306)
++|+||+|+++||++++|++++++++++.+++++.+.+..++|+||||||||||++|+++||++.|+++. +.|...
T Consensus 83 ~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~ 162 (524)
T 3hn7_A 83 LVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVN 162 (524)
T ss_dssp EEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCC
T ss_pred EEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccc
Confidence 6789999999999999999999999999999887532467899999999999999999999999999864 222110
Q ss_pred -hhhh--hhhhccccCCCC------CCCCcEEEEEecccccccC---C--ceecccEEEEecCChhhhhccCCHHHHHHH
Q 021862 80 -NPLS--EAAFHCIALPSS------KPKFQVAVVEVSSYQMEIP---N--KYFCPTVSVVLNLTPDHLERHKTMKNYALT 145 (306)
Q Consensus 80 -~~~~--~~~~~~~~~~~~------~~~~~~~V~E~~~~~~~~~---~--~~~~p~i~viTni~~dH~~~~gt~e~~~~~ 145 (306)
+|-+ ...-........ ..++|++|+|+|+++.... . ..++|+++|||||++||+|+|||+|+|+++
T Consensus 163 ~T~~nln~~ig~~~~~~~~~~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~y~~a 242 (524)
T 3hn7_A 163 TTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQ 242 (524)
T ss_dssp SSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHHHHHH
T ss_pred cCchhhhhhhhhHHhhCCCcccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCCHHHHHHH
Confidence 0000 000000000001 2346899999999775432 1 137999999999999999999999999999
Q ss_pred HHHhhccccCCeeEEEeCCChhhHHHHhc-ccccEEEeccCC----------------------Ceeec-cccccceEEE
Q 021862 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFP----------------------GVKID-TEAKTASFEV 201 (306)
Q Consensus 146 k~~i~~~~~~~~~~V~n~dd~~~~~~~~~-~~~~~~~~g~~~----------------------~~~~~-~~~~~~~~~~ 201 (306)
|.++++.+++++.+|+|.|||.+..+... ...++++||... ++... .......|.+
T Consensus 243 K~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~l 322 (524)
T 3hn7_A 243 FHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTV 322 (524)
T ss_dssp HHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEE
T ss_pred HHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEEE
Confidence 99999998889999999999999887653 445788888631 11110 0011233444
Q ss_pred ecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHH
Q 021862 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281 (306)
Q Consensus 202 ~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~ 281 (306)
...+....+..++++++|+||++|+++|+ +++..+|++.+.|.++|++|+|++||||++. ..+++++|+|+ +|||.
T Consensus 323 ~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D~-ahnp~ 398 (524)
T 3hn7_A 323 SFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDF-AHHPT 398 (524)
T ss_dssp EETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEEC-CCSHH
T ss_pred EECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEEC-CCCHH
Confidence 33333200224589999999999999999 8999999999999999999999999999996 46789999998 89999
Q ss_pred HHHHHHhccC----CCcEEEEECCC
Q 021862 282 ATCTGLMDLK----GHKCVILLGGQ 302 (306)
Q Consensus 282 s~~~al~~~~----~~~~i~v~G~~ 302 (306)
|++++++.++ ++|+++|+|.+
T Consensus 399 ~~~a~l~~l~~~~~~~r~i~V~g~~ 423 (524)
T 3hn7_A 399 AITTTLDGAKKKLADRRLWAIIEPR 423 (524)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCC
Confidence 9999988763 57899999974
No 5
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=7.4e-50 Score=380.54 Aligned_cols=283 Identities=21% Similarity=0.306 Sum_probs=209.7
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC----C
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----G 79 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~----g 79 (306)
.+|.+++++++.|.+. +++..++|++++..++.. .+.++|+||||||||||++|++++|++.|..+++.|++ |
T Consensus 64 ~vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig 140 (452)
T 1gg4_A 64 ALLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIG 140 (452)
T ss_dssp EEEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred EEEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcc
Confidence 3456777765566432 456667788888776543 37899999999999999999999999999666566663 3
Q ss_pred hhhhhhhhccccCCCCCCCCcEEEEEeccccc-cc--CCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCC
Q 021862 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-EI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (306)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~-~~--~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~ 156 (306)
.|++... ...++|++|+|+|+++. +. ....++|+++|||||++||+|+|||+|+|+++|.++++.++++
T Consensus 141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~ 212 (452)
T 1gg4_A 141 VPMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 (452)
T ss_dssp HHHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTT
T ss_pred hhHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccC
Confidence 3432211 14568999999996543 31 2224799999999999999999999999999999999988888
Q ss_pred eeEEEeCCChhhHHHH--hcccccEEEeccCC---Ceeec---cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHH
Q 021862 157 KLGLLPFGNQHLNEAI--KGHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228 (306)
Q Consensus 157 ~~~V~n~dd~~~~~~~--~~~~~~~~~~g~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~ 228 (306)
+.+|+|.|||....+. .. ..++++||... ++... .......+.+...+... .++++++|+||++|+++
T Consensus 213 ~~~V~n~dd~~~~~~~~~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~Nala 288 (452)
T 1gg4_A 213 GIAIMNADNNDWLNWQSVIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALA 288 (452)
T ss_dssp CEEEEETTBCCHHHHHHHHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHhhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHH
Confidence 9999999999887763 22 45788898643 22211 11112234443322222 24789999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC--CCcEEEEECCCCC
Q 021862 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAK 304 (306)
Q Consensus 229 A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~--~~~~i~v~G~~~~ 304 (306)
|+ +++..+|++++.|.++|++|+++|||||++. ..+++.+|||+|||||+|++.+++.++ .+|+++|+|+|.+
T Consensus 289 A~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e 363 (452)
T 1gg4_A 289 AA--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAE 363 (452)
T ss_dssp HH--HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCC
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccc
Confidence 99 8999999999999999999999999999996 356799999988999999999999874 2688999999854
No 6
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=6.2e-49 Score=376.44 Aligned_cols=281 Identities=18% Similarity=0.204 Sum_probs=225.0
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCc-c-cccCCChh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGNP 81 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~-~-~~g~~g~~ 81 (306)
++|+||+++++||+++.|++++++++++.+.+.+.. ++.++|+||||||||||++|+++||+++|++. . +.|+.+..
T Consensus 80 ~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~~ 158 (475)
T 1p3d_A 80 VVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSA 158 (475)
T ss_dssp EEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCccccc
Confidence 578999999999999999999999999999888777 45789999999999999999999999999873 2 45554422
Q ss_pred hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEE
Q 021862 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL 160 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V 160 (306)
-. .. ...+.|++|+|+|+.+.. ...++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+|
T Consensus 159 ~~-~~--------~~~~~d~~VlE~~~~~~~--~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V 227 (475)
T 1p3d_A 159 GK-NA--------HLGASRYLIAEADESDAS--FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV 227 (475)
T ss_dssp TE-EE--------ECCSSSEEEEECCCTTSG--GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred cc-cc--------ccCCCCEEEEEecCCcCc--cccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 11 10 123578999999966542 2236899999999999999999 899999999999999888889999
Q ss_pred EeCCChhhHHHHhcccccEEEeccCCC--eeec---cccccceEEEecCC-eeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862 161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (306)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~N~l~A~~~a~ 234 (306)
+|.|||.+..+.+....++++||...+ +... .+.....+.+...+ ... .++++++|+||++|+++|+ ++
T Consensus 228 ~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~ 302 (475)
T 1p3d_A 228 MCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERI---NVLLNVPGKHNALNATAAL--AV 302 (475)
T ss_dssp EETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEE---EEEESSCSHHHHHHHHHHH--HH
T ss_pred EECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEE---EEEEcCccHHHHHHHHHHH--HH
Confidence 999999988887766667889986532 2211 11112234443222 112 2478999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc---CCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCC
Q 021862 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ 302 (306)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~---~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~ 302 (306)
+..+|++.+.|.++|++|+|+|||||++.... +++++|+| |||||.+++++++.++ ++|+++|+|++
T Consensus 303 ~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~ 376 (475)
T 1p3d_A 303 AKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPH 376 (475)
T ss_dssp HHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCB
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 99999999999999999999999999996211 37899999 5999999999988763 47899999863
No 7
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=5.6e-50 Score=381.71 Aligned_cols=278 Identities=18% Similarity=0.177 Sum_probs=214.0
Q ss_pred cccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC----Ch
Q 021862 5 WLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GN 80 (306)
Q Consensus 5 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~----g~ 80 (306)
+|.+++++ +.|.+. +++..++|+.++..++..+ +.++|+||||||||||++|++++|++.|.++.+.|++ |.
T Consensus 66 vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~~-~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig~ 141 (454)
T 2am1_A 66 TLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEKT-TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGL 141 (454)
T ss_dssp EEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHHH-CCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHH
T ss_pred EEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhCC-CCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccch
Confidence 45666665 556433 3556667888887665432 6789999999999999999999999999877677763 34
Q ss_pred hhhhhhhccccCCCCCCCCcEEEEEeccccccc---CCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCe
Q 021862 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI---PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (306)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~---~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~ 157 (306)
|++... ...++|++|+|+|+++... ....++|+++|||||++||+|+|||+|+|+++|.++++.+++++
T Consensus 142 p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~ 213 (454)
T 2am1_A 142 PYTVLH--------MPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGS 213 (454)
T ss_dssp HHHHHT--------CCTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTC
T ss_pred HHHHhc--------CCCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCC
Confidence 433221 1457899999999854432 22247899999999999999999999999999999999887889
Q ss_pred eEEEeCCChhhHHHHhcccccEEEeccCCCeee---ccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862 158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (306)
Q Consensus 158 ~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~ 234 (306)
.+|+|.|| ....+.+. ..++++||...+..+ ..+.....+.+...+. .++++++|+||++|+++|+ ++
T Consensus 214 ~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaA~--a~ 284 (454)
T 2am1_A 214 LLLAPADP-IVEDYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQ-----ALDLPVTGKYNATNAMIAS--YV 284 (454)
T ss_dssp EEEEESCG-GGGGGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSS-----EEEESSCCHHHHHHHHHHH--HH
T ss_pred EEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCc-----EEEecCCCHHHHHHHHHHH--HH
Confidence 99999998 77666554 557889986432111 1011112233322111 2478999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---C---CcEEEEECCCCC
Q 021862 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAK 304 (306)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~---~~~i~v~G~~~~ 304 (306)
+..+|++++.|.++|++|+|+|||||++. ..+++.+|||+|||||+|++.+++.++ + +|+++|+|+|.+
T Consensus 285 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e 359 (454)
T 2am1_A 285 ALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKE 359 (454)
T ss_dssp HHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCC
T ss_pred HHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchh
Confidence 99999999999999999999999999996 346788999999999999999999875 2 689999999853
No 8
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=2e-48 Score=374.28 Aligned_cols=281 Identities=17% Similarity=0.222 Sum_probs=225.1
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCc-c-cccCCChh
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGNP 81 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~-~-~~g~~g~~ 81 (306)
++|+||+++++||+++.|++++++++++.+.+.+.. ++.++|+||||||||||++||++||+++|++. . +.|+.+..
T Consensus 81 ~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~~ 159 (491)
T 2f00_A 81 VVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAA 159 (491)
T ss_dssp EEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeeccc
Confidence 578999999999999999999999999999988887 46799999999999999999999999999873 2 45554422
Q ss_pred hhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhhccccCCeeEE
Q 021862 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL 160 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~-gt~e~~~~~k~~i~~~~~~~~~~V 160 (306)
-.. . ...+.|++|+|+|+.+.. ...++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+|
T Consensus 160 ~~~-~--------~~~~~d~~VlE~~~~~~~--~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V 228 (491)
T 2f00_A 160 GVH-A--------RLGHGRYLIAEADESDAS--FLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 228 (491)
T ss_dssp TEE-E--------ECCSSSEEEEECCCTTSG--GGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ccc-c--------cCCCCCEEEEEeCCCccc--hhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 110 0 123578999999965532 2236899999999999999999 899999999999999888889999
Q ss_pred EeCCChhhHHHHhcccccEEEeccCCC--eeec---cccccceEEEecCC-eeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862 161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (306)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~N~l~A~~~a~ 234 (306)
+|.|||.+..+.+....++++||...+ +... .+.....+.+...+ ... .+.++++|+||++|+++|+ ++
T Consensus 229 ~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~ 303 (491)
T 2f00_A 229 MCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM---RVTLNAPGRHNALNAAAAV--AV 303 (491)
T ss_dssp EETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--HH
T ss_pred EECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEE---EEEEccchHHHHHHHHHHH--HH
Confidence 999999998888776678889987532 2211 11112234443222 112 2478999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc-------CC-EEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCC
Q 021862 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI-------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ 302 (306)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~-~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~ 302 (306)
+..+|++.+.|.++|++|+|+|||||++.... ++ ++||+| |||||.+++++++.++ ++|+++|+|++
T Consensus 304 a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~ 382 (491)
T 2f00_A 304 ATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQPH 382 (491)
T ss_dssp HHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECCB
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 99999999999999999999999999996211 37 899999 5999999999988763 36788999863
No 9
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=8.6e-47 Score=360.76 Aligned_cols=270 Identities=19% Similarity=0.189 Sum_probs=212.1
Q ss_pred ecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCC--CCcEEEEecCCChhhHHHHHHHHHHhcCCCcc--cccCCC
Q 021862 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLG 79 (306)
Q Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~--~~g~~g 79 (306)
++|+||+|+++||++.+|++++++++++.+.+++.. + +.++|+||||||||||++|++++|+++|++++ +.|+++
T Consensus 74 ~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~ 152 (469)
T 1j6u_A 74 LVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMD 152 (469)
T ss_dssp EEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCT
T ss_pred EEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeec
Confidence 578999999999999999999999999999888777 4 57899999999999999999999999999863 455544
Q ss_pred hhhhhhhhccccCCCCCCCCcEEEEEecccccccCCceecccEEEEecCChhhhhccCC-HHHHHHHHHHhhccccCCee
Q 021862 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKL 158 (306)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~~p~i~viTni~~dH~~~~gt-~e~~~~~k~~i~~~~~~~~~ 158 (306)
.+-. .. +. -.+.| +|+|+++++.. ...++|+++|||||++||+|+||+ +|+|+++|.++++.++ .
T Consensus 153 ~~g~-~~---~~----~~~~~-~V~E~~~~~~~--~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~---~ 218 (469)
T 1j6u_A 153 SLEH-GN---YE----KGNGP-VVYELDESEEF--FSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD---L 218 (469)
T ss_dssp TSTT-SS---EE----CCSSC-EEEEECTTSGG--GGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS---E
T ss_pred ccCc-cc---cc----cCCCC-EEEECCCccCc--cccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC---E
Confidence 3210 11 11 12356 99999988642 224799999999999999999998 9999999999887543 8
Q ss_pred EEEeCCChhhHHHHhcccccEEEeccCC-Ceee--cccccc-ceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHH
Q 021862 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (306)
Q Consensus 159 ~V~n~dd~~~~~~~~~~~~~~~~~g~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~ 234 (306)
+|+|.|||.+..+ ++++||... ++.. ..+... ..+.+...+... ..++++++|+||++|+++|+ ++
T Consensus 219 ~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~--~~~~l~l~G~hn~~NalaAi--a~ 288 (469)
T 1j6u_A 219 VVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRY--LELKLKVPGFHNVLNALAVI--AL 288 (469)
T ss_dssp EEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEE--EEEEESSCSHHHHHHHHHHH--HH
T ss_pred EEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEE--EEEEecCcCHHHHHHHHHHH--HH
Confidence 9999999876432 567887542 2211 001111 233333233221 23578999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeeEE--eeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEEC
Q 021862 235 GLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG 300 (306)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~--~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G 300 (306)
+..+|++++.|+++|++|+++|||||++ . ..+++.+|+|+ +|||.++++++++++ ++|+++|+|
T Consensus 289 a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D~-aHnp~~~~a~l~al~~~~~~~~i~~I~g 358 (469)
T 1j6u_A 289 FDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDDY-AHTPDEIRNLLQTAKEVFENEKIVVIFQ 358 (469)
T ss_dssp HHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEEC-CCSHHHHHHHHHHHHHHCSSSEEEEEEC
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEeC-CCCHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999999999999999999999999999 5 45789999995 999999999888763 468899997
No 10
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.3e-46 Score=362.22 Aligned_cols=251 Identities=22% Similarity=0.177 Sum_probs=195.2
Q ss_pred CCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-ccCC-----------CCCCCCcEEEEEeccc
Q 021862 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY 109 (306)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~V~E~~~~ 109 (306)
+.++|+||||||||||++||+++|++.|+++++.|+.++.+....... .+++ +...++|++|+|+|++
T Consensus 107 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~ 186 (498)
T 1e8c_A 107 NLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 186 (498)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCc
Confidence 678999999999999999999999999999988888776544321110 0111 1145689999999987
Q ss_pred ccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhccccCCeeEEEeCCChhhHHHHhcccc---cEEEecc
Q 021862 110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIGA 184 (306)
Q Consensus 110 ~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~---~~~~~g~ 184 (306)
+++ .+.. ++|+++|||||+.||+|+|||+|+|+++|.++++. ++++.+|+|.||+....+.+.... ++++||.
T Consensus 187 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~ 264 (498)
T 1e8c_A 187 GLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 264 (498)
T ss_dssp HHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCC
T ss_pred hhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEec
Confidence 654 2332 68999999999999999999999999999999987 567899999999999888765433 6677775
Q ss_pred CC-----Ceeec---cccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 021862 185 FP-----GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256 (306)
Q Consensus 185 ~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~ 256 (306)
.. ++... .......+.+...+... .+.++++|+||++|+++|+ +++..+|++++.|.++|++|+|+|
T Consensus 265 ~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~~ 339 (498)
T 1e8c_A 265 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPVC 339 (498)
T ss_dssp CTTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCCT
T ss_pred CCCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCC
Confidence 43 22111 11112233333222122 2478999999999999999 899999999999999999999999
Q ss_pred CeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEECC
Q 021862 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGG 301 (306)
Q Consensus 257 gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G~ 301 (306)
||||++. ..+++++|+| |||||+|++.+++.++ .+|+++|+|.
T Consensus 340 gR~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~ 385 (498)
T 1e8c_A 340 GRMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGC 385 (498)
T ss_dssp TSSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECC
T ss_pred CceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 9999995 3457789999 6999999999999874 4689999984
No 11
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=5.1e-46 Score=360.67 Aligned_cols=252 Identities=22% Similarity=0.254 Sum_probs=196.6
Q ss_pred CCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCChhhhhhhhcc-ccCC-----------CCCCCCcEEEEEeccc
Q 021862 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY 109 (306)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~V~E~~~~ 109 (306)
+.++|+||||||||||++||+++|++.|+++++.|+.++.+....... ..++ +...++|++|+|+|++
T Consensus 145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~ 224 (535)
T 2wtz_A 145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH 224 (535)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 678999999999999999999999999999988888766554221110 1111 1135789999999987
Q ss_pred ccc--cCCceecccEEEEecCChhhhhccCCHHHHHHHHHHhhcccc--CCeeEEEeCCChhhHHHHhcccccEEEeccC
Q 021862 110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF 185 (306)
Q Consensus 110 ~~~--~~~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~~~--~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~ 185 (306)
+++ .+.. ++|+++|||||+.||+|+|||+|+|+++|.++++..+ +++.+|+|.||+....+.+... ++++||..
T Consensus 225 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~ 302 (535)
T 2wtz_A 225 ALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAA 302 (535)
T ss_dssp HHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESS
T ss_pred ccccccccc-CCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecC
Confidence 653 2332 6899999999999999999999999999999998764 5689999999999888776544 78888865
Q ss_pred C---Ceee---ccc-cccceEEEecCCee-eEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 021862 186 P---GVKI---DTE-AKTASFEVPAVGVV-SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257 (306)
Q Consensus 186 ~---~~~~---~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~g 257 (306)
. ++.. ..+ .....+.+...+.. . .+.++++|+||++|+++|+ +++..+|++.+.|.++|++|+ +||
T Consensus 303 ~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~g 376 (535)
T 2wtz_A 303 DRPAHWRATDVAPTDAGGQQFTAIDPAGVGH---HIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPG 376 (535)
T ss_dssp SSCCSEEEEEEEEETTTEEEEEEECTTSCEE---EEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTT
T ss_pred CCcCcEEEEEEEEcCCCCeEEEEEeCCceEE---EEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCC
Confidence 3 2211 111 12233444332211 2 2478999999999999999 899999999999999999999 899
Q ss_pred eeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC--CCcEEEEECCCC
Q 021862 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQA 303 (306)
Q Consensus 258 R~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~--~~~~i~v~G~~~ 303 (306)
|||++. ..+++++|+| |||||+|++.+++.++ ++|+++|+|.++
T Consensus 377 R~e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~g 422 (535)
T 2wtz_A 377 RLEQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGG 422 (535)
T ss_dssp SSEECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCT
T ss_pred ceEEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCC
Confidence 999995 3457778888 6999999999999986 468999999754
No 12
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=5.7e-45 Score=333.00 Aligned_cols=246 Identities=18% Similarity=0.205 Sum_probs=193.3
Q ss_pred eecccccccccCchHHHHHHhcCCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCcc--cc---cC
Q 021862 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VG---GN 77 (306)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~--~~---g~ 77 (306)
-++|+||+|+++||+++.|++++++++++.+.+++.+.++.++|+||||||||||++|++++|++.|.++. ++ ++
T Consensus 68 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n 147 (326)
T 3eag_A 68 DVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPEN 147 (326)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETT
T ss_pred CEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceecc
Confidence 36789999999999999999999999999998887432467899999999999999999999999999864 22 55
Q ss_pred CChhhhhhhhccccCCCCCCCCcEEEEEecccccccC-----CceecccEEEEecCChhhhhccCCHHHHHHHHHHhhcc
Q 021862 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152 (306)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~-----~~~~~p~i~viTni~~dH~~~~gt~e~~~~~k~~i~~~ 152 (306)
+|.+.....-..+ ...++.+++|+|+|+++.... ...++|+++|||||++||+|+|||+|+|+++|.++++.
T Consensus 148 ~~~~~~~~~p~~~---~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~ 224 (326)
T 3eag_A 148 FGVSARLPQTPRQ---DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT 224 (326)
T ss_dssp SSCSEECCCCCSS---CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTT
T ss_pred CCcceecCCcccc---ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHh
Confidence 6654221100000 124467899999999765432 12369999999999999999999999999999999998
Q ss_pred ccCCeeEEEeCCChhhHHHHhc-ccccEEEeccCCCeeecc-ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHH
Q 021862 153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (306)
Q Consensus 153 ~~~~~~~V~n~dd~~~~~~~~~-~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~ 230 (306)
+++++.+|+|.||+.+..+.+. ...++++||...++.... ...+. +.+...+.. +..++++++|+||++|+++|+
T Consensus 225 ~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp SCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHHH
Confidence 8889999999999999887754 455788898644443210 11122 555444432 224589999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCC
Q 021862 231 LSVLGLDIGVDVEALNSTIEILRTPP 256 (306)
Q Consensus 231 ~~a~~~~lg~~~~~i~~~l~~~~~~~ 256 (306)
++|..+|++.+.|.++|++|+|++
T Consensus 302 --a~a~~lGi~~~~i~~~L~~f~gv~ 325 (326)
T 3eag_A 302 --AAARHVGVDIQTACEALGAFKNVK 325 (326)
T ss_dssp --HHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCC
Confidence 899999999999999999999854
No 13
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=2e-43 Score=334.16 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=186.3
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhh-----------cccc-----C
Q 021862 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAF-----------HCIA-----L 92 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~-----------~~~~-----~ 92 (306)
++.++|+||||||||||++|++++|++.|+++++.++ .|.+++...+ +.+. .
T Consensus 37 ~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~ 116 (428)
T 1jbw_A 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADF 116 (428)
T ss_dssp GSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCC
Confidence 3678999999999999999999999999999976655 2333221100 0000 0
Q ss_pred C--------------CCCCCCcEEEEEeccc-ccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCC
Q 021862 93 P--------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNT 156 (306)
Q Consensus 93 ~--------------~~~~~~~~~V~E~~~~-~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~ 156 (306)
+ +...++|++|+|+|++ .++... .++|+++|||||+.||+++|| |+|+|+++|.++++ ++
T Consensus 117 ~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~-~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~ 192 (428)
T 1jbw_A 117 NVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTN-VITPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIK---RG 192 (428)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTC-SCCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TT
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEecCCCccccccc-cCCCCEEEECcCcHhhhhhhCCCHHHHHHHHhcccc---CC
Confidence 0 0145789999999976 555544 379999999999999999999 99999999999986 57
Q ss_pred eeEEEeCCChhhHHHHhc----ccccEEEeccCCCeeecc---ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHH
Q 021862 157 KLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (306)
Q Consensus 157 ~~~V~n~dd~~~~~~~~~----~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A 229 (306)
+.+|+|.||+.+..+.+. .+.++++||.+ +.... ......+.+...+... ..++++++|+||++|+++|
T Consensus 193 ~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~l~G~hn~~Na~aA 268 (428)
T 1jbw_A 193 IPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDGRI--SDLEVPLVGDYQQRNMAIA 268 (428)
T ss_dssp CCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTEEE--EEEEESCCSTHHHHHHHHH
T ss_pred ceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCcc--ceeeccccccCCceEEEecCCccc--cccccCCCChhHHHHHHHH
Confidence 899999999987765532 24577888752 22110 0112234443332222 1347899999999999999
Q ss_pred HHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC---CCcEEEEEC
Q 021862 230 ALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLG 300 (306)
Q Consensus 230 ~~~a~~~~l-g-----~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---~~~~i~v~G 300 (306)
+ +++..+ | ++.+.|.++|++|+ +|||||++. .++..++|| +|||+|++.+++.++ .+|+++|+|
T Consensus 269 i--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD~--AhNp~s~~a~l~~l~~~~~~~~i~V~g 341 (428)
T 1jbw_A 269 I--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVIDG--AHNPDGINGLITALKQLFSQPITVIAG 341 (428)
T ss_dssp H--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEEC--CCSHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred H--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEEC--CcCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 9 888888 8 99999999999999 799999995 345566663 789999999999874 368899999
Q ss_pred CCCC
Q 021862 301 GQAK 304 (306)
Q Consensus 301 ~~~~ 304 (306)
++..
T Consensus 342 ~~~~ 345 (428)
T 1jbw_A 342 ILAD 345 (428)
T ss_dssp CSSS
T ss_pred eCCC
Confidence 8754
No 14
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=1.5e-42 Score=332.48 Aligned_cols=269 Identities=18% Similarity=0.185 Sum_probs=194.9
Q ss_pred CeeeehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCCC------------hhhhhhhh---
Q 021862 26 KRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG------------NPLSEAAF--- 87 (306)
Q Consensus 26 ~~~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~g------------~~~~~~~~--- 87 (306)
.+.|.|+..+.+.++ ++.++|+||||||||||++||++||+++|++++++++.. .+++...+
T Consensus 44 ~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~ 123 (487)
T 2vos_A 44 DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVAT 123 (487)
T ss_dssp CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHH
Confidence 346778877766663 467899999999999999999999999999996554421 11111000
Q ss_pred -----------c------------cccC----------CCCCCCCcEEEEEeccc-ccccCCceecccEEEEecCChhhh
Q 021862 88 -----------H------------CIAL----------PSSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHL 133 (306)
Q Consensus 88 -----------~------------~~~~----------~~~~~~~~~~V~E~~~~-~~~~~~~~~~p~i~viTni~~dH~ 133 (306)
+ .... .+...++|++|+|+|++ .++..+ .++|+++|||||+.||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn-~i~p~vaVITnI~~DHl 202 (487)
T 2vos_A 124 YREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATN-VINAPVAVITPISIDHV 202 (487)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTC-SSCCSEEEECCCCCCBC
T ss_pred HHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcccccc-ccCCCEEEECCcchhhh
Confidence 0 0000 01145789999999986 445444 47999999999999999
Q ss_pred hccC-CHHHHHHHHHHhhccc---cCCeeEEEeCCChhhHHHHh----cccccEEEeccCCCee-eccccccceEEEecC
Q 021862 134 ERHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVK-IDTEAKTASFEVPAV 204 (306)
Q Consensus 134 ~~~g-t~e~~~~~k~~i~~~~---~~~~~~V~n~dd~~~~~~~~----~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 204 (306)
++|| |+|+|+++|.++++.+ ++++.+|+|.||+.+..++. ..+.++++||.+.... .........+.+...
T Consensus 203 d~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~ 282 (487)
T 2vos_A 203 DYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGL 282 (487)
T ss_dssp SCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTTBEEEEEEEETTEEEEEEEET
T ss_pred hhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCceEEEeeccccCCceEEEecC
Confidence 9999 8999999999999754 67889999999998766432 2245677776421111 000111223444332
Q ss_pred CeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCC
Q 021862 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277 (306)
Q Consensus 205 ~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l-------g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~ 277 (306)
+... ..+.++++|.||++|+++|+ +++..+ |++.+.|+++|++|+ .|||||++. . +..+|+|+ +
T Consensus 283 ~~~~--~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~-~~~vi~D~-A 353 (487)
T 2vos_A 283 GGVY--SDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--S-APTVFIDA-A 353 (487)
T ss_dssp TEEE--EEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--T-TTEEEECC-C
T ss_pred Cccc--ceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--C-CCeEEEEC-C
Confidence 2221 12478999999999999999 788877 799999999999999 599999995 3 34778885 9
Q ss_pred CcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862 278 TNLEATCTGLMDLK----GHKCVILLGGQAK 304 (306)
Q Consensus 278 ~n~~s~~~al~~~~----~~~~i~v~G~~~~ 304 (306)
|||+|++.++++++ ++|+++|+|++..
T Consensus 354 HNp~a~~a~l~~l~~~~~~~~~i~V~G~~~d 384 (487)
T 2vos_A 354 HNPAGASALAQTLAHEFDFRFLVGVLSVLGD 384 (487)
T ss_dssp CSHHHHHHHHHHHHHSCCCSEEEEEECCBTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 99999999988773 3689999999743
No 15
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=1.4e-42 Score=329.34 Aligned_cols=249 Identities=17% Similarity=0.187 Sum_probs=180.1
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccC------------CChhhhhhhhc-----------cc-------
Q 021862 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-----------CI------- 90 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~------------~g~~~~~~~~~-----------~~------- 90 (306)
++.++|+||||||||||++||+++|++.|+++++.++ .|.+++...+. .+
T Consensus 50 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (442)
T 1o5z_A 50 LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFS 129 (442)
T ss_dssp GSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTC
T ss_pred hcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCC
Confidence 3678999999999999999999999999999976554 24443322110 00
Q ss_pred -cCC----------CCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCe
Q 021862 91 -ALP----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (306)
Q Consensus 91 -~~~----------~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~ 157 (306)
+.+ +...++|++|+|+|+ +.++.... ++|+++|||||+.||+++|| |+|+|+++|.++++ +++
T Consensus 130 ~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---~~~ 205 (442)
T 1o5z_A 130 PSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---ERV 205 (442)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHHHHHHGGGCC---TTC
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc---CCc
Confidence 000 013578999999994 55665544 79999999999999999999 99999999999987 578
Q ss_pred eEEEeCCChhhHHHHhc----ccccEEEeccCCCeeecc---ccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHH
Q 021862 158 LGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (306)
Q Consensus 158 ~~V~n~dd~~~~~~~~~----~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~ 230 (306)
.+|+|.||+.+..+.+. .+.++++|+.+ +.... ......+.+...+ .. ..++++++|+||++|+++|+
T Consensus 206 ~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~l~G~hn~~NalaAi 280 (442)
T 1o5z_A 206 PLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGEN-TF--EDLVLTMNGPHQIENAGVAL 280 (442)
T ss_dssp CEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESSS-EE--EEEEESSCSTHHHHHHHHHH
T ss_pred cEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEeccc-cc--cccccCCCcHhHHHHHHHHH
Confidence 99999999987766532 24577788752 21110 1112234443221 11 13478999999999999999
Q ss_pred HHHHHH--HcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862 231 LSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (306)
Q Consensus 231 ~~a~~~--~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~ 304 (306)
+++. .+|++++.|.++|++|+ +|||||++. ..+..+++|+ +|||+|++.+++.++ ++|+++|+|++..
T Consensus 281 --a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD~-AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~d 354 (442)
T 1o5z_A 281 --KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILDG-AHNPHGAESLVRSLKLYFNGEPLSLVIGILDD 354 (442)
T ss_dssp --HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEECC-CCSHHHHHHHHHHHHHHCTTCCEEEEECCCTT
T ss_pred --HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEEC-CcCHHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 8899 89999999999999999 699999995 3324566674 999999999999874 3689999998754
No 16
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=6e-41 Score=317.72 Aligned_cols=261 Identities=19% Similarity=0.169 Sum_probs=186.9
Q ss_pred eeehHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC------------Chhhhhhhhcc---
Q 021862 28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC--- 89 (306)
Q Consensus 28 ~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~--- 89 (306)
-|.|+..+.+.++ .+.++|+||||||||||++||++||+++|++++++++. |.+++...+..
T Consensus 34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~ 113 (437)
T 3nrs_A 34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA 113 (437)
T ss_dssp CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence 4667776666552 46789999999999999999999999999999766552 22222111000
Q ss_pred --------c-cC-----------CCCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHH
Q 021862 90 --------I-AL-----------PSSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC 147 (306)
Q Consensus 90 --------~-~~-----------~~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~ 147 (306)
. .+ .+...++|++|+|+|. |.++..+. ++|+++|||||+.||+++|| |+|+|+++|+
T Consensus 114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka 192 (437)
T 3nrs_A 114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGREKA 192 (437)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHHHG
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHHHH
Confidence 0 00 0114578999999995 55666554 79999999999999999999 8999999999
Q ss_pred HhhccccCCeeEEEeCCChh--hHHHHhcccccEEEeccCCCeeec--------cccccceEEEecCCeeeEEEeeccCC
Q 021862 148 HLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKV 217 (306)
Q Consensus 148 ~i~~~~~~~~~~V~n~dd~~--~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (306)
++++ +++.+|+|.||+. +...++..+.++++||.+.++... .+.....+.+...+. . ...+++
T Consensus 193 ~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l 265 (437)
T 3nrs_A 193 GVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPV 265 (437)
T ss_dssp GGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECC
T ss_pred hhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCC
Confidence 9987 5789999988764 344555566778888864222111 011122333332221 1 124455
Q ss_pred C--ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----
Q 021862 218 M--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---- 291 (306)
Q Consensus 218 ~--G~~~~~N~l~A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~---- 291 (306)
+ |.||+.|+++|+ ++ ..+|++.+.|+++|++++ .|||||++. .++ .+|+|+ +|||+|++.+++.++
T Consensus 266 ~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~~-~vi~D~-AHNp~a~~all~~l~~~~~ 337 (437)
T 3nrs_A 266 PNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQP-LLILDV-AHNPHAARYLVNRLAQVIN 337 (437)
T ss_dssp CSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEECC-CCSHHHHHHHHHHHHHTC-
T ss_pred cchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cCC-eEEEEC-CCCHHHHHHHHHHHHhhcc
Confidence 5 889999988887 44 668999999999999999 699999995 333 688885 999999999887765
Q ss_pred ------CCcEEEEECCCCC
Q 021862 292 ------GHKCVILLGGQAK 304 (306)
Q Consensus 292 ------~~~~i~v~G~~~~ 304 (306)
++|+++|+|.+.+
T Consensus 338 ~~~~~~~~r~i~V~G~~~d 356 (437)
T 3nrs_A 338 PVNASKQGKVRAVVGMLSD 356 (437)
T ss_dssp -------CCEEEEECCBTT
T ss_pred hhhhcCCCCEEEEEeCCCC
Confidence 4689999997654
No 17
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=8.3e-40 Score=308.84 Aligned_cols=244 Identities=19% Similarity=0.154 Sum_probs=175.6
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCCcccccCC------------Chhhhhhhh----cc----c-cCC------
Q 021862 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAF----HC----I-ALP------ 93 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~~g~~------------g~~~~~~~~----~~----~-~~~------ 93 (306)
.+.++|+||||||||||++|++++|+++|+++++.++. |.+++...+ +. . ..+
T Consensus 47 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~t~~e~ 126 (422)
T 1w78_A 47 PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDISLTYFEY 126 (422)
T ss_dssp CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhccCCCChHHH
Confidence 56789999999999999999999999999998654432 111111100 00 0 000
Q ss_pred --------CCCCCCcEEEEEecc-cccccCCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhhccccCCeeEEEeC
Q 021862 94 --------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163 (306)
Q Consensus 94 --------~~~~~~~~~V~E~~~-~~~~~~~~~~~p~i~viTni~~dH~~~~g-t~e~~~~~k~~i~~~~~~~~~~V~n~ 163 (306)
+...++|++|+|+|. +.++... .++|+++|||||+.||+|+|| |+|+|+++|.++++ +++.+|+|.
T Consensus 127 ~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~-~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~~~~v~~~ 202 (422)
T 1w78_A 127 GTLSALWLFKQAQLDVVILEVGLGGRLDATN-IVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---SEKPAIVGE 202 (422)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSSSSTTSGGG-GSCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TTSEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCccccccc-CCCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc---CCCcEEEcC
Confidence 013468999999995 5555444 479999999999999999999 89999999999986 478899988
Q ss_pred CChhh--HHHHhcccccEEEeccCCCeeeccccccceEEEecCCeeeEEEeeccCCCChhHHHHHHHHHHHHHHHHc--C
Q 021862 164 GNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--G 239 (306)
Q Consensus 164 dd~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~l~A~~~a~~~~l--g 239 (306)
|++.. ...+...+.++++||.+ +....+ ...+.+...+... +.++++ .||++|+++|+ +++..+ |
T Consensus 203 d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi--a~~~~~~~g 271 (422)
T 1w78_A 203 PEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGTL----ENLPLP-LVPQPNAATAL--AALRASGLE 271 (422)
T ss_dssp SSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEEE----EEECCC-SSCHHHHHHHH--HHHHHHTCC
T ss_pred ccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCccc----ccCCch-HHHHHHHHHHH--HHHHHhCCC
Confidence 77642 22333334577888742 222111 1223333222211 366777 89999999999 777765 8
Q ss_pred CCHHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccC----CCcEEEEECCCCC
Q 021862 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (306)
Q Consensus 240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~----~~~~i~v~G~~~~ 304 (306)
++++.|.++|++|+ .|||||++. .++ .+|+|+ +|||+|++.+++.++ ++|+++|+|++..
T Consensus 272 i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D~-Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~ 335 (422)
T 1w78_A 272 VSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFDV-AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHD 335 (422)
T ss_dssp CCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEEC-CCSHHHHHHHHHHHHHSCSCSCEEEEECCBTT
T ss_pred CCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEEC-CCCHHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 99999999999999 599999995 344 566675 999999999988763 4689999998653
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=98.97 E-value=4.5e-10 Score=91.69 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhcc----CCCcEEEEECC
Q 021862 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGG 301 (306)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~----~~~~~i~v~G~ 301 (306)
..+|.++|++|+|++||||++. ..++++||+| |||||.|++++++.+ +++|+++|+|-
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~ 72 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEP 72 (163)
T ss_dssp ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECC
T ss_pred HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 4689999999999999999997 4678999999 599999999998876 35789999863
No 19
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=94.22 E-value=0.013 Score=55.02 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=47.6
Q ss_pred eccccccccc-CchHHHHHHhcCCee--eehHHHHHhhCC---CCCc-EEEEecCCChhhH-HHHHHHHHHhc
Q 021862 4 LWLFLLEFQL-KATGLACLLQSGKRV--MSELDFAAQVIP---RSIK-ILAVTGTNGKSTV-VTFVGQMLNHL 68 (306)
Q Consensus 4 ~~~~~~~~~~-~~p~~~~~~~~~~~~--l~~~~~~~~~~~---~~~~-~I~VtGT~GKTTt-~~ll~~iL~~~ 68 (306)
+++.+++.+. +++....|+++++++ .++++......| .+.+ +|+|| |||||++ +++|.+-|.+.
T Consensus 75 lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 75 LAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence 3455777773 677778899999887 677766544433 2334 99999 9999998 88888888864
No 20
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.24 E-value=0.074 Score=47.35 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=29.7
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+.++|+|+| -.|||||+.-|+..|.+.|++|.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVll 81 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 81 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEE
Confidence 4778999995 568999999999999999999964
No 21
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.55 E-value=0.11 Score=43.92 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++++.|.|||| .|||+++..|.+.|++.|+++..
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~ 38 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC 38 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE
Confidence 46789999999 59999999999999999999854
No 22
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=92.45 E-value=0.12 Score=44.53 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=31.6
Q ss_pred HHhhCCCCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862 35 AAQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 35 ~~~~~~~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++++..++++.|.||||. |||+++..|...|++.|+++..
T Consensus 18 ~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~ 60 (251)
T 3fgn_A 18 ENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAV 60 (251)
T ss_dssp ----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 344444567899999997 8999999999999999999854
No 23
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.80 E-value=0.14 Score=41.64 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=27.7
Q ss_pred CcEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 43 ~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+++|+|+ |-.||||++..|+..|.+.|+++.+
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vll 35 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAV 35 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 4688888 5567999999999999999999864
No 24
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.64 E-value=0.18 Score=40.64 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=29.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
.+++|+|+|.. ||||+...|...|...|++++..-
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 56799999975 999999999999999999986443
No 25
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.84 E-value=0.31 Score=42.59 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=29.7
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+.++|+||++ -||||++.-|+..|.+.|.+|.+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL 126 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLL 126 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence 46689999876 48999999999999999999864
No 26
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.83 E-value=0.18 Score=41.74 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=27.2
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|.|+++ .||||++.-|...|.+.|++|.+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 57888876 68999999999999999999864
No 27
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.61 E-value=0.55 Score=41.21 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=30.4
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCcccc
Q 021862 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
...++|.||++ -||||++.-|+..|.+.|.+|.+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 46689999987 589999999999999999998653
No 28
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.63 E-value=0.28 Score=41.16 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=28.4
Q ss_pred CCCcEEEEec---CCChhhHHHHHHHHHHhc-CCCccc
Q 021862 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHL-GIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtG---T~GKTTt~~ll~~iL~~~-g~~~~~ 74 (306)
+..++|+|++ -.||||++..|+..|.+. |++|.+
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vll 39 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLA 39 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEE
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEE
Confidence 3568899984 567999999999999998 999864
No 29
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.18 E-value=0.54 Score=40.61 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=29.9
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++.++|.||++ -||||++.-|+..|.+.|.+|.+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLL 116 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLI 116 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 46789999966 68999999999999999999864
No 30
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.96 E-value=0.29 Score=41.68 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=28.8
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+.++|+|++.+ ||||++..|+..|.+.|++|.+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll 40 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLL 40 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEE
Confidence 356899998655 7999999999999999999864
No 31
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=88.85 E-value=0.37 Score=40.19 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=26.7
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+++ .||||++..|+..|.+.|+++.+
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA 36 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 57888765 58999999999999999999864
No 32
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=88.77 E-value=0.61 Score=39.80 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=29.0
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+..++|+|++++ ||||++.-|+..|.+.|++|.+
T Consensus 16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vll 52 (262)
T 2ph1_A 16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGI 52 (262)
T ss_dssp TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 456789998765 6999999999999999999864
No 33
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=88.56 E-value=0.41 Score=40.83 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=29.6
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
..+.|.|||| .|||+++..|.+.|++.|++++.
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~ 55 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTIL 55 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEE
Confidence 4589999999 69999999999999999999854
No 34
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=86.58 E-value=0.54 Score=39.90 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=26.0
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+++ .||||++..|+..|.+.|++|.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTI 36 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 56777654 57999999999999999999864
No 35
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.54 E-value=0.55 Score=40.71 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=27.0
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+ |-.||||++.-|+..|.+.|++|.+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 38 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV 38 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 588898 4568999999999999999999864
No 36
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=86.29 E-value=0.64 Score=41.29 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=29.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+..+|+|+|.+ |||||+..|...|...|.++.+.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45689999876 799999999999999998886544
No 37
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=85.75 E-value=0.69 Score=39.01 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.3
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+|+++ .||||++..|+..|.+.|++|.+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 57888654 57999999999999999999864
No 38
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=85.38 E-value=0.33 Score=42.18 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.0
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-|-.||||++..|+..|...|++|.+
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVll 70 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLM 70 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence 35689999999999999999999864
No 39
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.29 E-value=0.78 Score=40.47 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
...+|+|+|.+ |||||+..|...+...|.++.+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45689999986 799999999999999888886544
No 40
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.23 E-value=0.65 Score=39.56 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=27.8
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++.++|+|++.+ ||||++..|+..|. .|++|.+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vll 60 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLL 60 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEE
Confidence 467899997765 69999999999999 9999854
No 41
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.96 E-value=1.2 Score=36.22 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=27.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.+..+|+|+|.+ ||||++.+|...|...|..+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 456799999987 899999999999987766553
No 42
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=84.11 E-value=0.85 Score=37.54 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=24.6
Q ss_pred EEEEe---cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+|+|+ |-.||||++..|+..|.+.| ++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vll 33 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL 33 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEE
Confidence 56665 56699999999999999999 8864
No 43
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=83.54 E-value=0.9 Score=41.08 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.6
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCCcccc
Q 021862 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
++.++|+|++.+ ||||++.-|+..|.+.|.+|.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 457899998654 79999999999999999998643
No 44
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=81.98 E-value=1.5 Score=35.83 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=26.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+..+|+|.|-+ ||||+..+|..++...|..+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~ 53 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPA 53 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCce
Confidence 466799999987 89999999999998755443
No 45
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=81.64 E-value=1.3 Score=39.59 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=30.7
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHHhcCCCcccccC
Q 021862 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
+..++|.|+ |-.||||++.-++..|.+.|++|.+...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 466778887 5568999999999999999999976554
No 46
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=81.10 E-value=1.4 Score=38.45 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=27.8
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++.++|+|+| -.||||++.-|+..|.+.|++|.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vll 74 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 74 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 3567888874 457999999999999999999853
No 47
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.08 E-value=1.4 Score=38.59 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=27.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh-cCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~-~g~~~~~~g 76 (306)
+..+|+++|.+ |||||+..|...+.. .|.++.+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44577777765 899999999999985 898886544
No 48
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=80.89 E-value=1.4 Score=39.58 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=63.2
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCCcccccCC---------Chhhhhhh-------hccccCCCCCCCCcEE
Q 021862 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGNL---------GNPLSEAA-------FHCIALPSSKPKFQVA 102 (306)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~~g~~---------g~~~~~~~-------~~~~~~~~~~~~~~~~ 102 (306)
+.+.|.|+|| -|||+|+..|.+.|++.|+++...++- |.+..... .+.+.. ...+++|+.
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~-~~~~~~d~v 229 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVM-RYGKNYDIL 229 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHH-HHTTTCSEE
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHH-HhccCCCEE
Confidence 4678999998 599999999999999999998643331 11111000 000000 113468999
Q ss_pred EEEeccc---ccccCC----ceeccc-EEEEecCChhhhhcc-----CCHHHHHHHHHHh
Q 021862 103 VVEVSSY---QMEIPN----KYFCPT-VSVVLNLTPDHLERH-----KTMKNYALTKCHL 149 (306)
Q Consensus 103 V~E~~~~---~~~~~~----~~~~p~-i~viTni~~dH~~~~-----gt~e~~~~~k~~i 149 (306)
++|-..+ ...... ...+|+ +.++...+.-|++.| ++++.....-..+
T Consensus 230 lVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l 289 (349)
T 2obn_A 230 HIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETV 289 (349)
T ss_dssp EECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred EEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHH
Confidence 9997633 221100 124777 566666677666433 3666665555544
No 49
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=79.61 E-value=1 Score=40.49 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=26.8
Q ss_pred CcEEEEecC---CChhhHHHHHHHHHHhcCCCccc
Q 021862 43 IKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 43 ~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+++|+|++. .||||++.-|+..|.+.|++|.+
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLl 35 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLY 35 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 367777755 58999999999999999999864
No 50
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=79.59 E-value=1.4 Score=38.49 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=23.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~ 71 (306)
+..+|+|||.. ||||++..|...|...|.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~ 35 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVK 35 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 45689999985 8999999999998865443
No 51
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=79.54 E-value=1.5 Score=40.62 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=28.9
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..+|.++|-+ |||||+.-|...|...|.++.+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5689999876 599999999999999999986543
No 52
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=79.20 E-value=1.6 Score=39.18 Aligned_cols=107 Identities=21% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCCcccccCC----------Chhhhhhhh-------ccccCCCCCCCCcE
Q 021862 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGNL----------GNPLSEAAF-------HCIALPSSKPKFQV 101 (306)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~g~~~~~~g~~----------g~~~~~~~~-------~~~~~~~~~~~~~~ 101 (306)
+.+.|.|+|| .|||+|+..|.+.|++.|++++..++- |.++..... +.+......++.|+
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 4678999998 499999999999999999998653331 111110000 00000000357799
Q ss_pred EEEEecccccc-cC--------CceecccEEEEec-CChhhhhcc------CCHHHHHHHHHHh
Q 021862 102 AVVEVSSYQME-IP--------NKYFCPTVSVVLN-LTPDHLERH------KTMKNYALTKCHL 149 (306)
Q Consensus 102 ~V~E~~~~~~~-~~--------~~~~~p~i~viTn-i~~dH~~~~------gt~e~~~~~k~~i 149 (306)
.++|-. |++. .. ..-.+|+..|+.- -++.|++.| +++++..+.-..+
T Consensus 248 ivVEGq-Ggl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l 310 (350)
T 2g0t_A 248 VFVEGQ-GALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETL 310 (350)
T ss_dssp EEEECC-SCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHS
T ss_pred EEEccC-eeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHh
Confidence 999988 3321 11 1124788888865 555555444 5666655554443
No 53
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.06 E-value=1.6 Score=38.59 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.5
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCCcccccC
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
++|.|+ |-.||||++.-++..|.+.|++|.+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 567776 6678999999999999999999976554
No 54
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=78.62 E-value=2.1 Score=37.60 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=29.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
...+|++.|-| ||||+...|...+...+.++.+.|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee
Confidence 44688888887 7999999999999987777765553
No 55
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=78.62 E-value=1.1 Score=40.88 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHH------hcCCCccc
Q 021862 41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~ll~~iL~------~~g~~~~~ 74 (306)
...++|+|+ |-.||||++..|+..|. ..|++|.+
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVll 151 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILV 151 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence 467899999 66689999999999998 57888853
No 56
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=78.51 E-value=2.3 Score=34.06 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=27.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+++++|+|.+ ||||+...|...|...|++++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~ 39 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 39 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeE
Confidence 35789999984 8999999999889888888753
No 57
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=78.22 E-value=1.9 Score=39.15 Aligned_cols=34 Identities=9% Similarity=0.194 Sum_probs=27.9
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHH------hcCCCccc
Q 021862 41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~ll~~iL~------~~g~~~~~ 74 (306)
...++|+|+ |-.||||++.-|+..|. ..|++|.+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVll 148 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILV 148 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence 357899998 55689999999999998 46888853
No 58
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=78.05 E-value=1.7 Score=38.56 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=27.3
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCCcccccC
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
++|.|+ |-.||||++..++..|.+.|++|.+...
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 445555 5678999999999999999999976443
No 59
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=77.74 E-value=2.5 Score=33.40 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
+..+|.++|.+ ||||.+.+|...|...|+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 34678899985 89999999999998777654
No 60
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.22 E-value=2.2 Score=34.06 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=24.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.|+++|. .||||.+.+|.+.|.+.|+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5888885 6899999999999999888774
No 61
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.61 E-value=1.9 Score=34.48 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=26.3
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++|+|+|.+ ||||...+|...+...|++++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G 34 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVA 34 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceE
Confidence 689999975 799999999999999888764
No 62
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=75.91 E-value=2.4 Score=33.51 Aligned_cols=29 Identities=48% Similarity=0.601 Sum_probs=24.5
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+.|.|+|. .||||.+..|..-|.+.|+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~ 32 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN 32 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceE
Confidence 46788886 689999999999999877765
No 63
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.85 E-value=2.7 Score=33.43 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+..+|.++|- .||||.+..|...|...|.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4568999997 679999999999999888765
No 64
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.83 E-value=2.8 Score=33.95 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=26.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+..+|.|+|. .||||.+..|..-|...|+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4568999986 689999999999999888776
No 65
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=75.35 E-value=2.8 Score=37.83 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=29.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
...+|++.|-| ||||+...|...+...+.++.+.|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 44588888887 7999999999999987777765553
No 66
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.34 E-value=2.7 Score=37.35 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+..+|++.|-| ||||+...|...+...+.++.+.|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45688888876 699999999999999888876554
No 67
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=75.20 E-value=2.4 Score=39.36 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=28.6
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..+|.++|.+ |||||+.-|...|...|+++.+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5688888875 699999999999999999986543
No 68
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=74.33 E-value=2.3 Score=34.55 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+|+|+|-+ ||||++.+|...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999987 59999999999886
No 69
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=74.19 E-value=1.8 Score=36.64 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.0
Q ss_pred cEEEE--ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 44 KILAV--TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 44 ~~I~V--tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
++|+| -|-.||||++..|+..|.+.|++|.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vll 34 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV 34 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence 34555 45678999999999999999999854
No 70
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.84 E-value=2.6 Score=35.35 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+..+|+|+|-| ||||++.+|...|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55799999987 7999999999987
No 71
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=73.44 E-value=3.5 Score=35.55 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=30.4
Q ss_pred CCCcEEEEec----CCChhhHHHHHHHHHHhcCCCcc
Q 021862 41 RSIKILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 41 ~~~~~I~VtG----T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.++|.|.||| +-||+-|++-+..+|+..|+++.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt 57 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcce
Confidence 4789999999 68999999999999999999984
No 72
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.29 E-value=5.4 Score=32.09 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=26.1
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCC
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~ 71 (306)
.+..+|+|+|- .||||+..+|...|...|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 46789999998 47999999999999876654
No 73
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=72.74 E-value=3.5 Score=38.87 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=28.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
...+|+|.|-| ||||+...|..++...+.++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 45588888887 799999999999998877776543
No 74
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=72.49 E-value=2.2 Score=36.77 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=25.9
Q ss_pred CcEEEEe--cCCChhhHHHHHHHHHHhcCCCccc
Q 021862 43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 43 ~~~I~Vt--GT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+++|+|+ |-.||||++.-|+..|.+.|++|.+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVll 35 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI 35 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 3556654 5578999999999999999999853
No 75
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=72.22 E-value=3.6 Score=32.55 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=23.9
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+|+++|. .||||.+.+|..-|.+.|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5777776 4899999999999988887663
No 76
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.05 E-value=3.8 Score=35.93 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=28.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccccC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
+..+|+|.|-| ||||+...|..++...+.++.+.|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 34588888876 6999999999999988777765553
No 77
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.00 E-value=3.5 Score=33.28 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+..+|.|+|. .||||.+.+|..-|...++++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3468999997 689999999999998877766
No 78
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=71.52 E-value=2.8 Score=37.56 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=27.4
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHH--hcCCCcccccC
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLN--HLGIEAFVGGN 77 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~--~~g~~~~~~g~ 77 (306)
++|.|+ |-.||||++.-++..|. +.|++|.+...
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 445555 67899999999999999 99999975444
No 79
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=70.63 E-value=4.2 Score=35.35 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcC
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g 69 (306)
.+..+|+|+|. .||||++.+|...|...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 45679999996 589999999999998753
No 80
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=69.83 E-value=3.2 Score=36.95 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=25.8
Q ss_pred cCCChhhHHHHHHHHHHhcCCCcccccCCC
Q 021862 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79 (306)
Q Consensus 50 GT~GKTTt~~ll~~iL~~~g~~~~~~g~~g 79 (306)
|-.||||++.-++..|.+.|.+|.+.....
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 677899999999999999999997666543
No 81
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=69.47 E-value=3.5 Score=33.41 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEecCCC--hhhHHHHHHHHHHhcC
Q 021862 45 ILAVTGTNG--KSTVVTFVGQMLNHLG 69 (306)
Q Consensus 45 ~I~VtGT~G--KTTt~~ll~~iL~~~g 69 (306)
+|+++|-|| |||+..+|...++..|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 567777775 9999999999998777
No 82
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=69.39 E-value=4 Score=35.93 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
.+..+|+|.|.| ||||++.+|..++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 456799999987 7999999999999863
No 83
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=68.97 E-value=1.6 Score=36.30 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.2
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 49 tGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
-|-.||||++.-|+..|.+.|++|.+
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vll 33 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYA 33 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 34557999999999999999999853
No 84
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=68.78 E-value=2.8 Score=33.80 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.3
Q ss_pred cEEEEecCC--ChhhHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQ 63 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~ 63 (306)
.+|+|+|.+ ||||.+.+|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 478999975 89999999988
No 85
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=68.46 E-value=4.4 Score=36.01 Aligned_cols=35 Identities=37% Similarity=0.403 Sum_probs=29.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcccc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
.+..+|+++|-+ ||||+...|...+...|.++.+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 467899999987 79999999999999888877543
No 86
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=67.75 E-value=1.1 Score=38.82 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=36.7
Q ss_pred cccccccc-cCchHHHHHHhc---CCee--eehHHHHHhhCC---CCCc--EEEEecCCChhhHH-HHHHHHHHh
Q 021862 5 WLFLLEFQ-LKATGLACLLQS---GKRV--MSELDFAAQVIP---RSIK--ILAVTGTNGKSTVV-TFVGQMLNH 67 (306)
Q Consensus 5 ~~~~~~~~-~~~p~~~~~~~~---~~~~--l~~~~~~~~~~~---~~~~--~I~VtGT~GKTTt~-~ll~~iL~~ 67 (306)
++.+++.+ ...+..+.|+++ ++++ ...++...-.+| .+.+ +|+|| |+|||++. ..|..-+.+
T Consensus 110 Viaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIS-T~Gksp~lA~~ir~~ie~ 183 (274)
T 1kyq_A 110 IMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILIS-TNGLSPRFGALVRDEIRN 183 (274)
T ss_dssp EEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEE-ESSSCHHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence 34444444 344555778888 7777 566654432222 2234 99999 99999764 455554444
No 87
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=66.44 E-value=5.3 Score=36.91 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhc-CCCccc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL-GIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~-g~~~~~ 74 (306)
+.++|.|+|. .|||||+.-|...|... |++|.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 3457777764 58999999999999998 999864
No 88
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=66.43 E-value=4.3 Score=35.45 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+|+|+|.+ ||||++.+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355799999987 59999999999987
No 89
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=65.88 E-value=4.2 Score=32.62 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+..+|+++|-| ||||+..+|...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999987 7999999998875
No 90
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=65.34 E-value=4.1 Score=34.28 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=21.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+..+|+|||.. ||||++.+|+..|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45689999975 999999998887653
No 91
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=65.30 E-value=5.8 Score=34.50 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=28.1
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..+|+|+|- .||||++..|...+...|.++.+.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 458888885 5799999999999999888886544
No 92
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=64.36 E-value=6.5 Score=34.88 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=29.6
Q ss_pred CCCcEEEEecCCC--hhhHHHHHHHHHHhcCCCccccc
Q 021862 41 RSIKILAVTGTNG--KSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~ll~~iL~~~g~~~~~~g 76 (306)
.+..+|+|+|.+| |||+...|...+...+.++.+.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4678999999986 99999999999988777765444
No 93
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=64.34 E-value=5.3 Score=30.98 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.6
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.+.+|+|+|. .||||.+.+|+.-|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999997 589999999988764
No 94
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=63.70 E-value=6 Score=32.25 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=19.5
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
..+|+|+|.+ ||||.+.+|...+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999986 59999999987663
No 95
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=63.32 E-value=5.4 Score=31.96 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.5
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
++|+|+|. .||||++.+|+..|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 38999997 499999999988764
No 96
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=63.32 E-value=10 Score=33.69 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=28.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+.++|+|+|.. ||||++.-|...|...|.++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~v 112 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAV 112 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 456799999964 7999999999999988998854
No 97
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=63.17 E-value=5.9 Score=34.52 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=27.8
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..+|+++|- .||||++..|...+...|.++.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457888875 4799999999999999998886543
No 98
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=63.14 E-value=7.6 Score=33.24 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=29.7
Q ss_pred CCCcEEEEecC----CChhhHHHHHHHHHHhcCCCcc
Q 021862 41 RSIKILAVTGT----NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 41 ~~~~~I~VtGT----~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.++|.|.|||- -||+-|++-+..+|++.|+++.
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt 57 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeE
Confidence 46799999985 4999999999999999999984
No 99
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=62.93 E-value=6.3 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+..+|+|+|-+ ||||.+.+|...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999986 5999999998877
No 100
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=62.69 E-value=5.8 Score=35.10 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+..+|+|+|.+ ||||++..|..+|..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34599999976 799999999999974
No 101
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=62.05 E-value=5 Score=32.35 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.3
Q ss_pred cEEEEecCC--ChhhHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQ 63 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~ 63 (306)
.+|+++|.+ ||||++.+|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 479999985 89999999876
No 102
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=61.85 E-value=6.1 Score=30.45 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=18.7
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.+|.|+|. .||||.+..|..-|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47889997 479999999887763
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=61.68 E-value=6.1 Score=31.48 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEecCCC--hhhHHHHHHHHHH
Q 021862 45 ILAVTGTNG--KSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtGT~G--KTTt~~ll~~iL~ 66 (306)
.++++|-|| |||+..+|...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999987 9999999999885
No 104
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=60.98 E-value=8 Score=36.37 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=29.9
Q ss_pred CCCcEEEEecC------CChhhHHHHHHHHHHhcCCCccc
Q 021862 41 RSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT------~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.+.++|.||.+ -|||||+.-|...|.+.|.++.+
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLL 94 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 36789999987 57999999999999999999854
No 105
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=60.43 E-value=6.2 Score=31.44 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+..+|+|+|. .||||.+.+|+.. |..+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~~~ 35 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GYPV 35 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TCCE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CCEE
Confidence 45678999997 4899999998874 6554
No 106
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=60.14 E-value=7.2 Score=36.79 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+.++|+|+|. .||||++.-|...|...|.++.+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3558888886 4799999999999999999886543
No 107
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=59.70 E-value=13 Score=30.02 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHH-hcCCCc
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQMLN-HLGIEA 72 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL~-~~g~~~ 72 (306)
....+|.++|. .||||.+..|...|. +.|+++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~ 57 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 57 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcE
Confidence 35678899986 689999999999998 677654
No 108
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=59.63 E-value=6.7 Score=31.73 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=19.3
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
-.+|++||- .||||++.+|...|
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999997 59999999998864
No 109
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=58.19 E-value=5.6 Score=32.80 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHH-HHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVG-QMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~-~iL~ 66 (306)
+..+|+++|-| ||||+..+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45689999998 6999999998 7764
No 110
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.50 E-value=4.8 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.8
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
++|+++|-| ||||+..+|...+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 468888877 599999999988863
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.36 E-value=5.7 Score=31.76 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+..+|+++|-+ ||||++.+|...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999987 7999999988776
No 112
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=57.29 E-value=13 Score=29.07 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH-hcCCCc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~-~~g~~~ 72 (306)
+...+.+.|-+ ||||++..+...+. ..|..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 35688999875 69999999999987 677665
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=57.25 E-value=5.8 Score=30.77 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.0
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+|+++|.+ ||||.+.+|+..|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899985 79999999988764
No 114
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.70 E-value=11 Score=29.39 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.6
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCC
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~ 70 (306)
..|.|+|. .||||.+..|..-|...|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 32 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 32 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 47888886 5899999999999987763
No 115
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=56.62 E-value=9.7 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.7
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcC
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g 69 (306)
...|.|+|. .||||.+..|..-|...|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357889986 799999999999887765
No 116
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=55.15 E-value=12 Score=33.25 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=28.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
...+|+|+|.+ ||||+...|...+...+.++.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 36799999997 699999999998888777765444
No 117
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=55.10 E-value=10 Score=34.86 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.4
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..+|+++|- .||||++..|...|...|.++.+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 457777775 4799999999999999998886543
No 118
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=55.01 E-value=12 Score=31.47 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=25.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
++..|.++|. .||||.+..|..-|.+.|+.+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 3457777775 5899999999999998887764
No 119
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=54.87 E-value=14 Score=29.85 Aligned_cols=34 Identities=6% Similarity=-0.129 Sum_probs=21.6
Q ss_pred CCcEEEEecCCChhhHHHHHHH--HHHhcCCCcccc
Q 021862 42 SIKILAVTGTNGKSTVVTFVGQ--MLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~ll~~--iL~~~g~~~~~~ 75 (306)
+.+++.++|.-|++-|+.++.. =+...|.++.+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 4579999999544444444444 444578888543
No 120
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=54.86 E-value=12 Score=30.69 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=24.9
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCC-Cc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGI-EA 72 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~-~~ 72 (306)
...|.+.|.. ||||.+..|.+-|...|+ .+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v 35 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM 35 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 3567788865 599999999999999998 44
No 121
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=54.73 E-value=10 Score=32.31 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
....+++|+|-| ||||+.+++...+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 366799999987 8999999999988753
No 122
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=54.72 E-value=11 Score=35.96 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCCccc
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
..+++.++| -.||||++..+...|.+.|+++.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLl 41 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLL 41 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEE
Confidence 344555554 579999999999999999999865
No 123
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=54.34 E-value=8.4 Score=29.74 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
++|.++|. .||||.+..|+.-|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46888886 699999999988764
No 124
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=53.78 E-value=14 Score=30.42 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=27.0
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCCccc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
...|.+.|.. ||||.+..|..-|...|+++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 4578888875 6999999999999999988743
No 125
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=53.51 E-value=8.8 Score=34.29 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=28.7
Q ss_pred CcEEEEe--cCCChhhHHHHHHHHHH--hcCCCcccccCCC
Q 021862 43 IKILAVT--GTNGKSTVVTFVGQMLN--HLGIEAFVGGNLG 79 (306)
Q Consensus 43 ~~~I~Vt--GT~GKTTt~~ll~~iL~--~~g~~~~~~g~~g 79 (306)
.+++.++ |-.||||++..++..|. +.|.++.+.....
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3555554 56789999999999999 8999997655543
No 126
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=53.37 E-value=8 Score=31.35 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.4
Q ss_pred CChhhHHHHHHHHHHhcCCCcccc
Q 021862 52 NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 52 ~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
.||||-+.+|.+-|++.|.++...
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEE
Confidence 699999999999999999988543
No 127
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=52.99 E-value=10 Score=29.92 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~i 64 (306)
+.+.|.++|.. ||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999985 699999998876
No 128
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=52.09 E-value=13 Score=29.93 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=26.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
...+++|+|-+ ||||+...+...+...+.++.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45689999986 599999999877766666665444
No 129
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=51.57 E-value=11 Score=28.83 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.1
Q ss_pred EEEEecC--CChhhHHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.|.|+|. .||||.+.+|+.-|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788887 599999999988763
No 130
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=51.21 E-value=13 Score=29.73 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+.+.|.++|.. ||||.+..|...|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45678888876 7999999999877
No 131
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=50.78 E-value=11 Score=30.17 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
..++|.|+|-+ ||||.+..|...|
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999976 6999999998877
No 132
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=50.73 E-value=13 Score=30.61 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+..+|+|+|.+ ||||.+.+|...|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 55689999986 7999999988765
No 133
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=49.62 E-value=13 Score=30.05 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=20.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+|+|+|-+ ||||+..+|...+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356789999987 59999998876654
No 134
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=49.59 E-value=14 Score=30.66 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=28.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh-cCCCccc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~-~g~~~~~ 74 (306)
.+...|.+.|.. ||||.+..|..-|.. .|+++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 356789999975 699999999999999 8988754
No 135
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=49.33 E-value=13 Score=31.95 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=19.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQ 63 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~ 63 (306)
....+|+|||.. ||||++.+|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346689999985 89999999984
No 136
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=49.02 E-value=11 Score=30.18 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.9
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHH
Q 021862 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
....+|+|+|. .||||.+.+|...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35679999995 67999999887755
No 137
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=48.67 E-value=16 Score=30.18 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+...|.+.|-. ||||.+..|...|.. |.++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 56789999975 699999999999998 87764
No 138
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=48.56 E-value=14 Score=29.99 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=17.8
Q ss_pred CcEEEEecCC--ChhhHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQ 63 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~ 63 (306)
..+|+|+|.. ||||.+.+|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 4589999975 89999999876
No 139
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=48.45 E-value=11 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|-| ||||+.++|..++.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 366799999988 79999999998875
No 140
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=47.96 E-value=9.6 Score=35.14 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=27.1
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCCccccc
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
..+|+|+|- .||||++.-|...|...|+++.+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 347777774 5899999999999999899886433
No 141
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=47.06 E-value=14 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.1
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
++|.++|. .||||.+..|..-|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 58999998 589999999887663
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=46.97 E-value=20 Score=29.71 Aligned_cols=34 Identities=21% Similarity=0.062 Sum_probs=22.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCcccc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
+..++.+||. .||||...-+..-+...|.++.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4579999999 556655555555555678787543
No 143
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=46.76 E-value=11 Score=29.54 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.4
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
++|.++|. .||||.+..|+.-|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35888886 689999999988663
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=46.09 E-value=13 Score=29.94 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.0
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.++++|.|-| ||||+..+|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567888876 89999999988775
No 145
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=46.08 E-value=17 Score=28.05 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=19.9
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
+..+|+++|- .||||.+.+|...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4568999998 47999999998876
No 146
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=45.88 E-value=20 Score=29.96 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=25.4
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCC
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~ 71 (306)
...|.+.|-. ||||.+..|..-|...|++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4578888875 7999999999999999988
No 147
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=45.36 E-value=7.5 Score=35.17 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=23.8
Q ss_pred cCCChhhHHHHHHHHHHhcCCCcccccC
Q 021862 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (306)
Q Consensus 50 GT~GKTTt~~ll~~iL~~~g~~~~~~g~ 77 (306)
|-.||||++..++..|.+.|++|.+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 4467999999999999999999876554
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=45.28 E-value=17 Score=28.52 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=19.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
+..+|.++|. .||||.+.+|+.-|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567888886 58999999998766
No 149
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=45.01 E-value=15 Score=32.90 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHHHHhc-CCCc
Q 021862 42 SIKILAVTGTNG--KSTVVTFVGQMLNHL-GIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT~G--KTTt~~ll~~iL~~~-g~~~ 72 (306)
...+|+|+|-+| |||+.+.+...+... +..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 445899999886 999999998888764 4444
No 150
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=44.99 E-value=21 Score=33.43 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.5
Q ss_pred CCCcEEEEecC------CChhhHHHHHHHHHHhcCCCcc
Q 021862 41 RSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 41 ~~~~~I~VtGT------~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.+.+.|.||+- -|||||+-=|.+.|...|.++.
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~ 79 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSI 79 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeE
Confidence 36789999998 6999999999999999999874
No 151
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=44.91 E-value=11 Score=31.31 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=26.2
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+..++.++| -.||||++.-+...|. .|+++.+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 445566655 6789999999999999 999986543
No 152
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=44.83 E-value=6 Score=31.87 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+|+|.|- .||||.+..|..-|...|+++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3555554 489999999999998877665
No 153
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=44.78 E-value=10 Score=30.86 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=17.0
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHL 68 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~ 68 (306)
.|.|.|. .||||.+..|+.-|...
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4445544 38999999998877543
No 154
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.48 E-value=15 Score=30.71 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=20.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+|+|+|-+ ||||++.+|..-|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 55699999976 69999999886653
No 155
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=44.21 E-value=17 Score=28.64 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.8
Q ss_pred EEEEecC--CChhhHHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.|+|+|. .||||.+..|+.-|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 5777776 469999999998775
No 156
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=43.78 E-value=22 Score=33.60 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=27.7
Q ss_pred CcEEEEec----CCChhhHHHHHHHHHHhcCCCcc
Q 021862 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 43 ~~~I~VtG----T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.|.|.||| +-||+-|++-+..+|+..|++|.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~ 37 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVT 37 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 47899998 45999999999999999999984
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=43.67 E-value=22 Score=30.32 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=27.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc-CCCccccc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL-GIEAFVGG 76 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~-g~~~~~~g 76 (306)
....+++|+|-+ ||||....+...+... |.++.+.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 366789999987 8999999998888764 76664433
No 158
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=43.23 E-value=15 Score=36.85 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=28.9
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhc-----CCCccc
Q 021862 42 SIKILAVTGT---NGKSTVVTFVGQMLNHL-----GIEAFV 74 (306)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~ll~~iL~~~-----g~~~~~ 74 (306)
..+.|.|+|| .|||+++.-|-.+|++. |++|..
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~ 73 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLY 73 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEE
Confidence 5678999999 69999999999999998 888753
No 159
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=43.14 E-value=22 Score=29.51 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=26.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhc----CCCcc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL----GIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~----g~~~~ 73 (306)
+...|.+.|-. ||||.+..|.+-|... |+++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~ 61 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV 61 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee
Confidence 45689999976 5999999999999987 87764
No 160
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=42.48 E-value=17 Score=28.47 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
..++|+|+|-+ ||||+..+|...+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44689999976 69999999887654
No 161
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.18 E-value=13 Score=29.00 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=16.6
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
+..+|.++|. .||||.+..|+.-|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3458999997 589999999876553
No 162
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=41.94 E-value=25 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
....++++.|-| ||||...++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 366799999987 5999999999888
No 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=41.93 E-value=21 Score=27.85 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=17.9
Q ss_pred cEEEEecCC--ChhhHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
.+|.++|.. ||||.+..|..-|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578898875 7999999887765
No 164
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=41.61 E-value=20 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+-.|++||. .||||++.++.. .|..+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~----~g~~v 36 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA----RGASL 36 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 4568999997 579999998765 46655
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=41.09 E-value=19 Score=27.37 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=19.2
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~ 73 (306)
.+|.|+|.. ||||.+..| +..|+.+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 368888875 799999887 56676653
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=40.93 E-value=18 Score=28.41 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.3
Q ss_pred cEEEEecCC--ChhhHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQ 63 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~ 63 (306)
.+|++.|.| ||||+..+|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 468888886 79999999865
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=40.82 E-value=27 Score=26.59 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=24.0
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
...+++.|.+ ||||....+...+...|.++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~ 67 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA 67 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE
Confidence 3578888876 79999999999998766544
No 168
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=40.72 E-value=15 Score=32.21 Aligned_cols=29 Identities=21% Similarity=0.595 Sum_probs=25.1
Q ss_pred CCcEEEE----ecCCChhhHHHHHHHHHHhcCC
Q 021862 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGI 70 (306)
Q Consensus 42 ~~~~I~V----tGT~GKTTt~~ll~~iL~~~g~ 70 (306)
+.|+|.| .|-.|||-++.+|...|++.+.
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~~ 67 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLLKDKRV 67 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHTTTSCE
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHHhhcCc
Confidence 5788988 7999999999999999987643
No 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=40.60 E-value=22 Score=31.93 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
....+|+|+|-+ ||||+...|...+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 356689999976 5999999999988864
No 170
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=40.36 E-value=25 Score=27.91 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=17.8
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+++.++|.. ||||...-+..-+...|.++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~ 35 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVA 35 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 578899984 566665333333344676664
No 171
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.28 E-value=16 Score=28.42 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHh
Q 021862 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 45 ~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+.+|+|-| ||||....|..+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 78899988 599999999998864
No 172
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=40.18 E-value=20 Score=28.52 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=19.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
.+..+|.|+|.. ||||.+..|..-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999975 7999998887654
No 173
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=39.73 E-value=21 Score=32.68 Aligned_cols=32 Identities=38% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
....+|+|+|-| |||||.+.+...+....-++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 355689999987 69999999888876543333
No 174
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=39.29 E-value=20 Score=28.06 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=17.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~i 64 (306)
+..+|++.|-+ ||||+..+|...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 55688898875 799998888654
No 175
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=39.18 E-value=25 Score=29.08 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+..+|+|.|-| ||||...+|..-|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999987 5999999888665
No 176
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=39.09 E-value=22 Score=27.88 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.5
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
..+|.|+|.. ||||.+..|+.-|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578888874 89999999988774
No 177
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=38.80 E-value=24 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.7
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
+...|.++|. .||||.+.+|..-|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457889986 59999999998876
No 178
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=38.19 E-value=19 Score=27.79 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.4
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
.+|.++|- .||||++..|..-|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46788886 689999999887764
No 179
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=38.09 E-value=36 Score=28.09 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=23.1
Q ss_pred CCcEEEEecCCChhhHHHHHHHHHH--hcCCCcccc
Q 021862 42 SIKILAVTGTNGKSTVVTFVGQMLN--HLGIEAFVG 75 (306)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~ll~~iL~--~~g~~~~~~ 75 (306)
+..+..+||+-||+-|+.++..+.+ .+|.++.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 4578999999666556666665555 578887543
No 180
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=37.40 E-value=28 Score=33.04 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
...+|.++|. .||||.+..|..-|...|..+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKV 403 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 3568889877 579999999999998887665
No 181
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.38 E-value=24 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.0
Q ss_pred cEEEEecCC--ChhhHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
..|.++|.. ||||.+.+|..-|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888875 7999999998766
No 182
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=37.02 E-value=32 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.4
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
....|.++|. .||||.+..|+.-|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3348899987 58999999998876
No 183
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=36.87 E-value=23 Score=29.56 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=23.2
Q ss_pred EEEecCCChhhHHHHHHHHHHhcCCCcc
Q 021862 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 46 I~VtGT~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.=.|-.||||++--+.+-|...|+++.
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 3445678999999999999999999874
No 184
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=36.61 E-value=28 Score=33.23 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.7
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcC-CCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g-~~~ 72 (306)
+..+|.++|- .||||.+..|...|...| ..+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~ 428 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 428 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceE
Confidence 4468889875 469999999999999877 544
No 185
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=35.73 E-value=33 Score=33.27 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
+..+|.++|. .||||.+..|+.-|.+.|+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~ 83 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 83 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4568999997 789999999999998888765
No 186
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=34.78 E-value=32 Score=26.70 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.4
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH
Q 021862 43 IKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
.+.|.++|- .||||.+..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456778884 58999999998776
No 187
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=34.76 E-value=31 Score=26.86 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=18.9
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
....|.++|. .||||.+..|..-|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457888886 58999999988766
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=34.28 E-value=34 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=19.4
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
....|.++|. .||||.+..|+.-|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457888886 489999999988764
No 189
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=33.84 E-value=35 Score=32.45 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=26.0
Q ss_pred cEEEEe-c---CCChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVT-G---TNGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~Vt-G---T~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.|.|| | +-|||.+++-|-.+|++.|++|.
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~ 37 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVT 37 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceee
Confidence 567777 5 46999999999999999999985
No 190
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=33.80 E-value=26 Score=27.09 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=17.9
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
+.|.|+|. .||||.+..|+.-|.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45777876 489999999987663
No 191
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=33.61 E-value=30 Score=26.75 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=18.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
+.+.|.++|. .||||.+..|..-|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3456788886 58999999988766
No 192
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=33.33 E-value=36 Score=32.41 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=26.4
Q ss_pred cEEEEe-cC---CChhhHHHHHHHHHHhcCCCcc
Q 021862 44 KILAVT-GT---NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 44 ~~I~Vt-GT---~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.|.|| || -||+.+++-|-.+|++.|++|.
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~ 46 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVT 46 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceee
Confidence 578888 54 6999999999999999999985
No 193
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=32.74 E-value=30 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=18.9
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+|++||. .||||++.+|..- .|..+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 57999996 5899998887543 45544
No 194
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=32.04 E-value=27 Score=33.38 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=21.0
Q ss_pred CCcEEEEecCCChhhH-HHHHHHHHHhcCCC
Q 021862 42 SIKILAVTGTNGKSTV-VTFVGQMLNHLGIE 71 (306)
Q Consensus 42 ~~~~I~VtGT~GKTTt-~~ll~~iL~~~g~~ 71 (306)
..-++|-.|| |||+| ++-+.+++.+.|..
T Consensus 24 ~~lV~a~aGs-GKT~~l~~ri~~l~~~~~~~ 53 (647)
T 3lfu_A 24 NLLVLAGAGS-GKTRVLVHRIAWLMSVENCS 53 (647)
T ss_dssp CEEEEECTTS-CHHHHHHHHHHHHHHTSCCC
T ss_pred CEEEEECCCC-CHHHHHHHHHHHHHHhCCCC
Confidence 4457788887 99998 55677888776543
No 195
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=31.13 E-value=31 Score=29.00 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=19.7
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.++|+++|-+ ||||++.+|+..|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578888876 79999999998764
No 196
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=31.12 E-value=23 Score=32.62 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=0.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCC-CcccccCCC
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGI-EAFVGGNLG 79 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~-~~~~~g~~g 79 (306)
+.|-+|| |||++...+...|.+.|. .+...+..+
T Consensus 50 i~G~aGT-GKT~ll~~~~~~l~~~~~~~il~~a~T~ 84 (459)
T 3upu_A 50 INGPAGT-GATTLTKFIIEALISTGETGIILAAPTH 84 (459)
T ss_dssp EECCTTS-CHHHHHHHHHHHHHHTTCCCEEEEESSH
T ss_pred EEeCCCC-CHHHHHHHHHHHHHhcCCceEEEecCcH
No 197
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=30.84 E-value=26 Score=28.55 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+..+++|.|-+ ||||+..+|...+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 55689999966 7999999998876
No 198
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=30.48 E-value=15 Score=28.81 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=25.4
Q ss_pred CCCCCeeeEEeeccCCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECC
Q 021862 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301 (306)
Q Consensus 253 ~~~~gR~e~~~~~~~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~ 301 (306)
+|+|+|-.++-. .+. .-.+. ..-..++.++++.+++.+-++|+||
T Consensus 52 ~plp~r~~iVlS-r~~--~~~~~-~~v~~s~~~al~~~~~~~~i~iiGG 96 (159)
T 3dau_A 52 RPLPGRKNIILS-SQP--GTDDR-VTWVKSVDEAIAACGDVPEIMVIGG 96 (159)
T ss_dssp SCCTTSCEEEEC-SSC--CSCTT-SEEESSHHHHHHTTCSCSCEEECCC
T ss_pred cccCCCEEEEEC-CCC--CCCCC-eEEECCHHHHHHHhcCCCCEEEECC
Confidence 589999988853 322 10111 1112245666777665456777887
No 199
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=30.43 E-value=46 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHhhCCCCCcEEEEecCCC--hhhHHHHHHHHHH
Q 021862 32 LDFAAQVIPRSIKILAVTGTNG--KSTVVTFVGQMLN 66 (306)
Q Consensus 32 ~~~~~~~~~~~~~~I~VtGT~G--KTTt~~ll~~iL~ 66 (306)
++.+.... ...++++.|-|| |||+..+|. .+.
T Consensus 156 i~~L~~~l--~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYL--EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHT--TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhc--cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 34444444 456889999987 999988887 443
No 200
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=30.37 E-value=34 Score=29.01 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 366799999999 79999988866554
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=30.00 E-value=41 Score=26.81 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=21.0
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCCcc
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~ 73 (306)
+.+.|+|+|. .||||+..-+..-+... .++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~ 61 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIG 61 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEE
Confidence 5678888876 79999887666555433 4444
No 202
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=29.45 E-value=25 Score=30.66 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=17.3
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHH
Q 021862 42 SIKILAVTGTNG--KSTVVTFVGQM 64 (306)
Q Consensus 42 ~~~~I~VtGT~G--KTTt~~ll~~i 64 (306)
++++++|||-+| |||....|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 578999999875 88877665544
No 203
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=28.29 E-value=51 Score=28.65 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCC
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~ 71 (306)
.+..+++|.|-+ ||||...+|..++ .|.-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I 154 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSV 154 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH--TCEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc--CceE
Confidence 366799999976 5999999999998 4543
No 204
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.01 E-value=39 Score=27.69 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|-| ||||...+|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 66799999988 69999999888765
No 205
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=27.84 E-value=40 Score=28.46 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999999 69999988876654
No 206
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=27.63 E-value=43 Score=27.16 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
+..+++|.|-| ||||...+|.-+ ..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 45689999998 699999999988 53
No 207
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=27.57 E-value=41 Score=27.97 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=20.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.. .+++|.|-| ||||...+|.-++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36 799999999 69999998877664
No 208
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=27.42 E-value=52 Score=30.73 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.3
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhc
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNHL 68 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~~ 68 (306)
.+++|.|-| ||||+..+|.-++...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 799999998 7999999999998753
No 209
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=27.10 E-value=44 Score=28.24 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
....+++|.|-| ||||...+|.-++
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366799999998 7999998887653
No 210
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=26.91 E-value=51 Score=27.41 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=19.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+|+|+|-. ||||.+..|..-|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999975 89999999887763
No 211
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=26.78 E-value=42 Score=28.37 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=21.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 366799999998 79999998877665
No 212
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=26.75 E-value=38 Score=27.78 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=19.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55689999998 79999888765543
No 213
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=26.75 E-value=57 Score=26.89 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=19.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
+...|.++|-. ||||.+.+|.+-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999985 7999999987655
No 214
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=26.29 E-value=45 Score=31.41 Aligned_cols=26 Identities=0% Similarity=-0.096 Sum_probs=22.9
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~~ 67 (306)
+..+|.++|- .||||++..|+.-|..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5568999996 5899999999999986
No 215
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=26.00 E-value=53 Score=26.99 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.4
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
+..+|.|+|. .||||++..|+.-|.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 4569999996 579999999888774
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=25.91 E-value=66 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.1
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCCc
Q 021862 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~ 72 (306)
..+.++|.. |||+.+..+..-+...|..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 578888875 89999999999888777665
No 217
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=25.89 E-value=36 Score=27.27 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=17.7
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
.+|+|+|. .||||.+.+|...|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 36889985 58999999887765
No 218
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=25.79 E-value=30 Score=27.66 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCCCCeeeEEeecc-----CCEEEEEcCCCCcHHHHHHHHhccCCCcEEEEECC
Q 021862 253 RTPPHRMQIVHRDI-----QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301 (306)
Q Consensus 253 ~~~~gR~e~~~~~~-----~~~~ii~D~~~~n~~s~~~al~~~~~~~~i~v~G~ 301 (306)
+|+|+|..++-.+. .++.++ + ++.++++.++..+-++|+||
T Consensus 53 ~plp~R~niVlSr~~~~~~~~v~v~-----~---sl~eal~~l~~~~~i~viGG 98 (178)
T 3tq8_A 53 KPLPHRRNIVITQQKNLIIEGCDIF-----Y---SLDDALSALTKEPEVIIIGG 98 (178)
T ss_dssp SCCTTSEEEEECSCTTCCCTTSEEE-----S---SHHHHHHHTTTCSEEEEEEC
T ss_pred hccCCCeEEEEcCCCCcCCCCeEEE-----C---CHHHHHHHhhCCCCEEEECC
Confidence 58999999885322 122222 2 45666666654456777777
No 219
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.59 E-value=46 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=20.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999998 79999888866654
No 220
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=25.57 E-value=51 Score=26.24 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.1
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 021862 45 ILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL 65 (306)
.|.|+|- .||||.+.+|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4677775 58999999987655
No 221
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=25.21 E-value=73 Score=25.74 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQ 63 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~ 63 (306)
+..+++|.|-| ||||+...+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 56799999988 79999998874
No 222
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=25.10 E-value=49 Score=26.60 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.7
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~iL 65 (306)
..|.++|. .||||.+..|+.-|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 45777775 68999999998877
No 223
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=24.82 E-value=49 Score=27.63 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~i 64 (306)
+..+++|.|-| ||||...+|.-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56799999999 799998888765
No 224
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=24.41 E-value=50 Score=27.40 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=21.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999998 69999998877665
No 225
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.27 E-value=48 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|-| ||||...+|.-++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999998 69999888766554
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=24.22 E-value=52 Score=25.08 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=15.7
Q ss_pred cEEEEecC--CChhhHHHHHHH
Q 021862 44 KILAVTGT--NGKSTVVTFVGQ 63 (306)
Q Consensus 44 ~~I~VtGT--~GKTTt~~ll~~ 63 (306)
.+|.|+|. .||||.+..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 36777776 489999988876
No 227
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=24.19 E-value=48 Score=27.78 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=20.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|-| ||||...+|.-++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55689999999 79999988877665
No 228
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=24.17 E-value=41 Score=29.72 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=20.4
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
...++|.|.| ||||...+|..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999976 599999999888763
No 229
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=24.04 E-value=50 Score=27.98 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999998 69999998876654
No 230
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=24.02 E-value=87 Score=27.37 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=35.2
Q ss_pred cccccccccCchHHHHHHhcCCeeeeh-------HH----HHHhhCC-----------CCCcEEEEecCC--ChhhHHHH
Q 021862 5 WLFLLEFQLKATGLACLLQSGKRVMSE-------LD----FAAQVIP-----------RSIKILAVTGTN--GKSTVVTF 60 (306)
Q Consensus 5 ~~~~~~~~~~~p~~~~~~~~~~~~l~~-------~~----~~~~~~~-----------~~~~~I~VtGT~--GKTTt~~l 60 (306)
+|++.+..+....++.|.+.++++++- +. ++...+. -....|.++|.. ||||++..
T Consensus 84 IIltrg~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~ 163 (314)
T 1ko7_A 84 IIVTRDLEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALE 163 (314)
T ss_dssp EEECTTCCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHH
Confidence 556677777666778899999998851 11 1222110 124578888876 58777655
Q ss_pred H
Q 021862 61 V 61 (306)
Q Consensus 61 l 61 (306)
+
T Consensus 164 l 164 (314)
T 1ko7_A 164 L 164 (314)
T ss_dssp H
T ss_pred H
Confidence 4
No 231
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=24.00 E-value=68 Score=26.05 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=19.7
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~ll~~iL~ 66 (306)
....|.++|. .||||.+.+|+.-|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4457888876 689999999988774
No 232
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=23.85 E-value=1.7e+02 Score=24.65 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=33.6
Q ss_pred CCeeeehHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCCc
Q 021862 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (306)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~ll~~iL~~~g~~~ 72 (306)
.+|++..++-..+.. ...+.|+|-||.| |..+.+....+.+.|..+
T Consensus 94 ~iPvigiiep~~~~~-~~~~~IGVLaT~~-Ti~s~~y~~~l~~~~~~~ 139 (268)
T 3out_A 94 AIPVIDVITAGVSLV-DNLNTVGVIATPA-TINSNAYALQIHKKNPNI 139 (268)
T ss_dssp TSCEEEHHHHHHHTT-TTCSEEEEEECHH-HHHHTHHHHHHHHHCTTS
T ss_pred CCCEEeccHHHHHHh-ccCCeEEEEecCc-ccccHHHHHHHHHhCCCC
Confidence 588888665433334 4678999999998 666678888998887654
No 233
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=23.81 E-value=52 Score=27.20 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999998 69998888765554
No 234
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=23.77 E-value=49 Score=27.74 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999998 69999998876664
No 235
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=23.70 E-value=45 Score=28.22 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.3
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
..+++|.|-| ||||...+|.-++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999 6999999887655
No 236
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=23.41 E-value=62 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.287 Sum_probs=16.6
Q ss_pred cEEEEecCC--ChhhHHHHHHHHH
Q 021862 44 KILAVTGTN--GKSTVVTFVGQML 65 (306)
Q Consensus 44 ~~I~VtGT~--GKTTt~~ll~~iL 65 (306)
++|.|+|.+ ||||.+..|..-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 467777754 8999998887655
No 237
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=23.41 E-value=39 Score=27.32 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~VtGT--~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
.|.+-|. .||||.+.+|.+-|. .|+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~ 34 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV-KDYDVIM 34 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-CCCCEEE
Confidence 4555554 689999999999996 4777643
No 238
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=23.28 E-value=70 Score=30.44 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=27.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g~~~~~~g 76 (306)
+.+.+.|+|-. |||||...+...|...|.++...+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 34577777765 899999999999999998886543
No 239
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=23.21 E-value=54 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=20.9
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....+++|.|-| ||||...+|.-++.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 356799999998 69999998876654
No 240
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=22.63 E-value=54 Score=27.98 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|-| ||||...+|.-++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56799999999 69999998876654
No 241
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=22.40 E-value=66 Score=25.74 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.1
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
..+..|+|-| ||||....|..+|-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3578888987 899999999998875
No 242
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=22.01 E-value=47 Score=27.10 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=19.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55689999988 69999888765543
No 243
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=21.81 E-value=57 Score=27.57 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=21.2
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHHHHh
Q 021862 42 SIKILAVTGTNG--KSTVVTFVGQMLNH 67 (306)
Q Consensus 42 ~~~~I~VtGT~G--KTTt~~ll~~iL~~ 67 (306)
...+++|.|-|| |||...+|.-++..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 567999999985 99999988777653
No 244
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=21.65 E-value=93 Score=25.67 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=20.8
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHH--hcCCCccc
Q 021862 41 RSIKILAVTGTNGKSTVVTFVGQMLN--HLGIEAFV 74 (306)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~ll~~iL~--~~g~~~~~ 74 (306)
.+..+..|||.-|++-|+.++..+.+ .+|.++.+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli 61 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVV 61 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEE
Confidence 35679999998555555555555433 45676643
No 245
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=21.35 E-value=60 Score=27.14 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
...+++|.|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 55689999998 69999988876654
No 246
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=21.27 E-value=65 Score=30.56 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~~~g 69 (306)
+..+|+++|-+ ||||+..+|...|...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 55688888876 59999999999998643
No 247
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=21.23 E-value=39 Score=27.56 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=18.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~i 64 (306)
+..+|+|.|-+ ||||...+|...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 45699999987 699988887665
No 248
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=21.15 E-value=57 Score=28.03 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=21.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
.+..+++|.|-| ||||...+|.-++.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 356799999998 69999988876654
No 249
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=21.01 E-value=48 Score=29.55 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCCccc
Q 021862 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (306)
Q Consensus 45 ~I~VtGT~GKTTt~~ll~~iL~~~g~~~~~ 74 (306)
+++-+| .||||+..++...+...|.++.+
T Consensus 40 i~G~~G-~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 40 ILAKPG-AGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp EECCTT-SSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEcCCC-CCHHHHHHHHHHHHHHCCCEEEE
Confidence 444455 58999998888777777776643
No 250
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=20.77 E-value=55 Score=31.07 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.7
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCCcccc
Q 021862 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (306)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~ll~~iL~~~g~~~~~~ 75 (306)
++|.|+ |-.||||++.-++..|.+.|.++.+.
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEE
Confidence 345554 45799999999999999999998654
No 251
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=20.63 E-value=98 Score=24.83 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=21.6
Q ss_pred CCcEEEEecCC--ChhhHHH-HHHHHHHhcCCCccccc
Q 021862 42 SIKILAVTGTN--GKSTVVT-FVGQMLNHLGIEAFVGG 76 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~-ll~~iL~~~g~~~~~~g 76 (306)
...++.|+|-+ ||||.+. ++..++. .|.++.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-MGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 45688888876 5999955 4455544 466665444
No 252
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=20.59 E-value=53 Score=30.85 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=18.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
....|+|+|-+ ||||+.++|...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34468888866 89999988877664
No 253
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=20.47 E-value=65 Score=26.41 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=19.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 021862 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (306)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~ll~~iL~ 66 (306)
+..+++|.|-| ||||...+|.-++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 55689999988 69998888765443
No 254
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=20.42 E-value=82 Score=23.78 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=20.2
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHh
Q 021862 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (306)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~ll~~iL~~ 67 (306)
..+.+|.|-| ||||....|..+|..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3478888887 899999999888853
Done!