BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021863
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
 pdb|1IO8|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
          Length = 368

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 118 RQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSP---------GV 168
           R  ++T+  PLH EL ++   + F P  ++ ++    E+ RS++    P          V
Sbjct: 65  RYTMLTSDPPLHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAV 123

Query: 169 FTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYG 210
               ++  +   L + + E F++W +   FR+ +P  + + G
Sbjct: 124 PLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGEIFELG 165


>pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
           With 4- Phenylimidazole Bound
 pdb|1F4T|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
           With 4- Phenylimidazole Bound
 pdb|1F4U|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
 pdb|1F4U|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
 pdb|1IO9|A Chain A, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
 pdb|1IO9|B Chain B, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
 pdb|1IO7|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
 pdb|1IO7|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
           Solfataricus: High Resolution Structural Origin Of Its
           Thermostability And Functional Properties
          Length = 368

 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 118 RQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSP---------GV 168
           R  ++T+  PLH EL ++   + F P  ++ ++    E+ RS++    P          V
Sbjct: 65  RYTMLTSDPPLHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAV 123

Query: 169 FTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYG 210
               ++  +   L + + E F++W +   FR+ +P  + + G
Sbjct: 124 PLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGEIFELG 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,535,564
Number of Sequences: 62578
Number of extensions: 403136
Number of successful extensions: 827
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 6
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)