Query 021864
Match_columns 306
No_of_seqs 117 out of 1495
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 4.8E-07 1.6E-11 65.3 6.5 72 78-149 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.3 6.1E-07 2.1E-11 67.1 5.7 63 240-302 42-105 (137)
3 2i68_A Protein EMRE; transmemb 98.3 4.1E-07 1.4E-11 68.0 4.6 71 78-148 33-104 (137)
4 3b5d_A Multidrug transporter E 98.1 5.7E-06 2E-10 59.6 6.8 62 242-303 44-106 (110)
5 3l1l_A Arginine/agmatine antip 13.5 6E+02 0.02 21.6 8.7 22 283-304 409-430 (445)
6 2b2h_A AMT-1, ammonium transpo 13.3 6.4E+02 0.022 21.8 17.7 85 115-205 234-319 (399)
7 3gia_A Uncharacterized protein 9.7 6.4E+02 0.022 21.4 6.7 25 112-136 354-378 (444)
8 2h3o_A MERF; membrane protein, 5.9 1.7E+02 0.0058 17.8 0.7 13 293-305 44-56 (61)
9 2jwa_A Receptor tyrosine-prote 5.7 3.5E+02 0.012 15.2 1.9 22 285-306 21-42 (44)
10 3l1l_A Arginine/agmatine antip 5.0 1.4E+03 0.047 19.2 8.5 124 62-189 315-443 (445)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.42 E-value=4.8e-07 Score=65.28 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhHHHHh-hhhhHHHHHHHHHHHhcceecccchhhhhhhhhhhhhhccCC
Q 021864 78 ISALSFVFCISVVFGNVSLRFLPVSFNQAV-GATTPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGGE 149 (306)
Q Consensus 78 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pv~~~l~~~~~~~~~~~~~~~~~i~~~~~G~~l~~~~~ 149 (306)
.+...+++..+..+...++++.|.+.+..+ ....|+++.+.+.++++|++++.|++++.++++|++++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345556688899999999999999999998 899999999999999999999999999999999999887544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.35 E-value=6.1e-07 Score=67.12 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcccccchhhhh-hhhhhHHHHhhhhhhcCccccccccchhHHHHHHHHHhhhhc
Q 021864 240 FVNLTNFLVTKHTSALTLQVL-GNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVMGVILYSEAK 302 (306)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~s~~-~~~~~v~~~~~~~~~~~e~~~~~~~iG~~l~~~g~~l~~~~~ 302 (306)
........++++.++..+... ..+.|+++++++++++||++|+.+++|+++++.|+++.+..+
T Consensus 42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344555668999999988777 899999999999999999999999999999999999987643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.34 E-value=4.1e-07 Score=68.03 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhHHHHh-hhhhHHHHHHHHHHHhcceecccchhhhhhhhhhhhhhccC
Q 021864 78 ISALSFVFCISVVFGNVSLRFLPVSFNQAV-GATTPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGG 148 (306)
Q Consensus 78 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pv~~~l~~~~~~~~~~~~~~~~~i~~~~~G~~l~~~~ 148 (306)
.+...+++.++..+++.+++++|++.+..+ .+..|+++.++++++++|++++.+++|+.++++|++++...
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345566688999999999999999999888 89999999999999999999999999999999999988643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.13 E-value=5.7e-06 Score=59.57 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=53.7
Q ss_pred HHHHHHhhcccccchhhhh-hhhhhHHHHhhhhhhcCccccccccchhHHHHHHHHHhhhhcc
Q 021864 242 NLTNFLVTKHTSALTLQVL-GNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVMGVILYSEAKK 303 (306)
Q Consensus 242 ~~~~~~~~~~~~~~~~s~~-~~~~~v~~~~~~~~~~~e~~~~~~~iG~~l~~~g~~l~~~~~~ 303 (306)
......++++.+...+... ..+.|+.+.+.+++++||++|+.+++|.++++.|+...+..++
T Consensus 44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~ 106 (110)
T 3b5d_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (110)
T ss_pred HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444557899888888666 8999999999999999999999999999999999999876554
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=13.52 E-value=6e+02 Score=21.60 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=15.2
Q ss_pred cccchhHHHHHHHHHhhhhccc
Q 021864 283 TGMLGYSLTVMGVILYSEAKKR 304 (306)
Q Consensus 283 ~~~iG~~l~~~g~~l~~~~~~~ 304 (306)
....|..++..|..+|...++|
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456788888898888754443
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=13.29 E-value=6.4e+02 Score=21.82 Aligned_cols=85 Identities=11% Similarity=-0.030 Sum_probs=43.5
Q ss_pred HHHHHHHHhcceecccchhhhhhhhhhhhhhccCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHH
Q 021864 115 TAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGGEPSFH-LFGFLMCIAATAARALKSVLQGILLSSEGEKLNSMNLLLY 193 (306)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~i~~~~~G~~l~~~~~~~~~-~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~ 193 (306)
..+.+++. +|++..... --.++|.+-++..-.-.+ ....+.++++....-....+.+|+. .++..+....=..
T Consensus 234 ~~~~~~~~--gk~~~~~~~--nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~--iDD~l~a~~vHgv 307 (399)
T 2b2h_A 234 WMVIGWIK--GKPGSLGIV--SGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKK--IDESLDAWAIHGI 307 (399)
T ss_dssp HHHHHHHH--SCCCHHHHH--HHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCTTCHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHH--HHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCceeccch
Confidence 34445444 555443222 223445544442222233 3355666666555444444555544 5667777777777
Q ss_pred HHHHHHHHHHHH
Q 021864 194 MAPIAVVLLLPA 205 (306)
Q Consensus 194 ~~~~~~~~~~~~ 205 (306)
...++.+....+
T Consensus 308 ~Gi~G~l~~glf 319 (399)
T 2b2h_A 308 GGLWGSVAVGIL 319 (399)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 777776655444
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=9.71 E-value=6.4e+02 Score=21.41 Aligned_cols=25 Identities=0% Similarity=0.109 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhcceecccchhhhh
Q 021864 112 PFFTAVFAYLMTLKREAWLTYVTLI 136 (306)
Q Consensus 112 pv~~~l~~~~~~~~~~~~~~~~~i~ 136 (306)
......++.+.+|+|.+..++....
T Consensus 354 ~~~~~~~~~~~~r~~~~~~~~~~~~ 378 (444)
T 3gia_A 354 IYLFVILSHYILIDEVGGRKEIVIF 378 (444)
T ss_dssp HHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCcchHHHH
Confidence 3333444556666655444444443
No 8
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=5.92 E-value=1.7e+02 Score=17.83 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=7.9
Q ss_pred HHHHHhhhhcccc
Q 021864 293 MGVILYSEAKKRS 305 (306)
Q Consensus 293 ~g~~l~~~~~~~~ 305 (306)
+|..+|...|+|+
T Consensus 44 igl~~Y~~~r~~~ 56 (61)
T 2h3o_A 44 IGLTIYAIQRKRQ 56 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 3777777555543
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=5.73 E-value=3.5e+02 Score=15.20 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHhhhhccccC
Q 021864 285 MLGYSLTVMGVILYSEAKKRSK 306 (306)
Q Consensus 285 ~iG~~l~~~g~~l~~~~~~~~~ 306 (306)
++-.+++..+..+|-++++.++
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHhheehhhhhc
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=5.00 E-value=1.4e+03 Score=19.18 Aligned_cols=124 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred hhccCccchhhhhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhhhhHHHHHHHHHHHhcceecccc-----hhhhh
Q 021864 62 KMVPMQTIRSRLQFLKISALSFVFCISVVFGNVSLRFLPVSFNQAVGATTPFFTAVFAYLMTLKREAWLT-----YVTLI 136 (306)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pv~~~l~~~~~~~~~~~~~~-----~~~i~ 136 (306)
.+..+.+.|.+..........+.. .........-.+........+.....-....++.+.+++|.++.+ ++++.
T Consensus 315 ~~~~~~~~P~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~r~~~~~~~~~~ 393 (445)
T 3l1l_A 315 ARVNKAGTPVAGLIIVGILMTIFQ-LSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTI 393 (445)
T ss_dssp GCCCTTCCCHHHHHHHHHHHHHHH-HSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSGGGCTTTHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhHHHHHH
Q ss_pred hhhhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHH
Q 021864 137 PVVTGVIIASGGEPSFHLFGFLMCIAATAARALKSVLQGILLSSEGEKLNSMN 189 (306)
Q Consensus 137 ~~~~G~~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~ 189 (306)
..+..+.+....+.+....|..+.+ .....|....|+..++++.+.++.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~y~~~~~~~~~~~~~~~~~~~ 443 (445)
T 3l1l_A 394 AFLYCIWAVVGSGAKEVMWSFVTLM---VITAMYALNYNRLHKNPYPLDAPIS 443 (445)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH---HHHHHHHHHHSTTCCCSSCCCC---
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHH---HHHHHHHHHhhhcccCccccccccc
Done!