Query 021864
Match_columns 306
No_of_seqs 117 out of 1495
Neff 9.9
Searched_HMMs 13730
Date Mon Mar 25 10:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021864.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021864hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 27.0 1.4E+02 0.01 23.7 19.5 80 121-204 248-329 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 10.3 88 0.0064 13.9 2.7 17 155-171 3-19 (27)
3 d1gl4a1 d.22.1.2 (A:399-631) D 5.2 1.6E+02 0.012 21.5 2.2 42 92-134 41-82 (233)
4 d2p7tc1 f.14.1.1 (C:86-119) Po 3.1 3.2E+02 0.023 12.6 1.8 15 111-125 19-33 (34)
5 d2h5na1 a.287.1.2 (A:1-132) Hy 1.5 9.7E+02 0.07 14.1 2.5 35 128-166 82-116 (132)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 1.5 6.6E+02 0.048 11.9 2.9 16 155-170 19-34 (37)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 1.4 5.4E+02 0.039 15.0 1.1 11 289-299 29-39 (91)
8 d1pv7a_ f.38.1.2 (A:) Lactose 1.3 1.5E+03 0.11 15.5 14.1 19 125-143 284-302 (417)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 1.3 7.2E+02 0.053 14.5 1.7 22 285-306 81-102 (103)
10 d1uptb_ a.193.1.1 (B:) Golgi a 1.3 4.5E+02 0.033 14.2 0.5 22 116-137 11-32 (58)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=26.99 E-value=1.4e+02 Score=23.68 Aligned_cols=80 Identities=6% Similarity=-0.001 Sum_probs=39.2
Q ss_pred HHhcceecccchhhhhhhhhhhhhhccCCCcchHH-HHHHHHHHHHHHHHHHHHHH-HHhccCCCCCChHHHHHHHHHHH
Q 021864 121 LMTLKREAWLTYVTLIPVVTGVIIASGGEPSFHLF-GFLMCIAATAARALKSVLQG-ILLSSEGEKLNSMNLLLYMAPIA 198 (306)
Q Consensus 121 ~~~~~~~~~~~~~~i~~~~~G~~l~~~~~~~~~~~-G~~~~l~a~~~~a~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
.+.++|++...... -.++|++-.+......++. ..+.+.++....-....+.| |.. .++..+...+=.....++
T Consensus 248 ~~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~--iDD~~~~~~vHg~~Gi~G 323 (383)
T d1u7ga_ 248 WALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR--VDDPCDVFGVHGVCGIVG 323 (383)
T ss_dssp HHHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCGGGHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcc--cccccceEeehhhhHHHH
Confidence 34455665554332 2345655544333233333 45666665544444434443 443 455556666656666666
Q ss_pred HHHHHH
Q 021864 199 VVLLLP 204 (306)
Q Consensus 199 ~~~~~~ 204 (306)
.+..-.
T Consensus 324 ~l~~gl 329 (383)
T d1u7ga_ 324 CIMTGI 329 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.35 E-value=88 Score=13.90 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021864 155 FGFLMCIAATAARALKS 171 (306)
Q Consensus 155 ~G~~~~l~a~~~~a~~~ 171 (306)
.|.+..-++.+++|.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 47777777888887764
No 3
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.19 E-value=1.6e+02 Score=21.54 Aligned_cols=42 Identities=5% Similarity=0.231 Sum_probs=33.7
Q ss_pred hhhcccccchhHHHHhhhhhHHHHHHHHHHHhcceecccchhh
Q 021864 92 GNVSLRFLPVSFNQAVGATTPFFTAVFAYLMTLKREAWLTYVT 134 (306)
Q Consensus 92 ~~~al~~~~~~~~~~i~~~~pv~~~l~~~~~~~~~~~~~~~~~ 134 (306)
.+.++..+|++....++-+.|+...+ +|++-||......-..
T Consensus 41 ~ytaIs~IP~~~G~~L~~L~~ig~~i-gWlFA~e~~~a~NGfs 82 (233)
T d1gl4a1 41 SYTAISTIPETVGYSLLPLAPIGGII-GWMFAVEQDGFKNGFS 82 (233)
T ss_dssp EEEEEESCCHHHHGGGTTCTHHHHHH-HHHTCEECTTCCCHHH
T ss_pred EEEEccCCChhHhhhhhhhhhhcCce-eeeEEeecCCccCceE
Confidence 35688899999999999999987766 8999888877654443
No 4
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.09 E-value=3.2e+02 Score=12.57 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHhcc
Q 021864 111 TPFFTAVFAYLMTLK 125 (306)
Q Consensus 111 ~pv~~~l~~~~~~~~ 125 (306)
..++.++..++..+|
T Consensus 19 glv~aa~atwfvgre 33 (34)
T d2p7tc1 19 GLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhccc
Confidence 334444444444443
No 5
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=1.51 E-value=9.7e+02 Score=14.08 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=20.2
Q ss_pred cccchhhhhhhhhhhhhhccCCCcchHHHHHHHHHHHHH
Q 021864 128 AWLTYVTLIPVVTGVIIASGGEPSFHLFGFLMCIAATAA 166 (306)
Q Consensus 128 ~~~~~~~i~~~~~G~~l~~~~~~~~~~~G~~~~l~a~~~ 166 (306)
.+.++++ .-.|++..+.+|.+.+-. .+|.+++.+|
T Consensus 82 erkkyva---sylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 82 ERKKYVA---SYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHHH---HHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHHHHHH---HHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 3445543 346777777777665533 3566666655
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.47 E-value=6.6e+02 Score=11.90 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 021864 155 FGFLMCIAATAARALK 170 (306)
Q Consensus 155 ~G~~~~l~a~~~~a~~ 170 (306)
+|.++.+.-++.++.|
T Consensus 19 ~GlLlifvl~vLFssY 34 (37)
T d2axtl1 19 LGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666555555554
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=1.37 E-value=5.4e+02 Score=15.03 Aligned_cols=11 Identities=0% Similarity=-0.121 Sum_probs=5.4
Q ss_pred HHHHHHHHHhh
Q 021864 289 SLTVMGVILYS 299 (306)
Q Consensus 289 ~l~~~g~~l~~ 299 (306)
.+.+.|...|.
T Consensus 29 ~v~V~~~~~~~ 39 (91)
T d1fftb2 29 VIPAILMAVGF 39 (91)
T ss_dssp TTHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 34445555554
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=1.31 E-value=1.5e+03 Score=15.54 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=10.0
Q ss_pred ceecccchhhhhhhhhhhh
Q 021864 125 KREAWLTYVTLIPVVTGVI 143 (306)
Q Consensus 125 ~~~~~~~~~~i~~~~~G~~ 143 (306)
+|..+++...+.....++.
T Consensus 284 ~r~~~~~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHHh
Confidence 4556666555554444444
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.31 E-value=7.2e+02 Score=14.53 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHhhhhccccC
Q 021864 285 MLGYSLTVMGVILYSEAKKRSK 306 (306)
Q Consensus 285 ~iG~~l~~~g~~l~~~~~~~~~ 306 (306)
..+..+..++-.....+++|+|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~rr~ 102 (103)
T d1r3jc_ 81 SFGLVTAALATWFVGREQERRG 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
No 10
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.30 E-value=4.5e+02 Score=14.24 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHhcceecccchhhhhh
Q 021864 116 AVFAYLMTLKREAWLTYVTLIP 137 (306)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~i~~ 137 (306)
.++.+...+|..+..+.++.++
T Consensus 11 vLfeYMmG~E~~tlaKVi~av~ 32 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTVL 32 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCcchhHHHHHHHHHH
Done!