BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021865
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XYG|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|2Q49|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
Length = 359
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/251 (81%), Positives = 225/251 (89%)
Query: 49 SLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF 108
S +V + K EK +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVF
Sbjct: 2 SFRVSASSSVKPEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVF 61
Query: 109 PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVS 168
PHL +Q LPT+V+VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++
Sbjct: 62 PHLRAQKLPTLVSVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIA 121
Query: 169 EYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
EYEEWYGQPH A +LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI
Sbjct: 122 EYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLI 181
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT 288
++ NIIIDAKSGVSGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVT
Sbjct: 182 KHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVT 241
Query: 289 VSFTPHLMPMV 299
VSFTPHLMPM+
Sbjct: 242 VSFTPHLMPMI 252
>pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|B Chain B, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|C Chain C, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|D Chain D, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
Length = 366
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/240 (79%), Positives = 216/240 (90%)
Query: 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT 118
KS ++VRI +LGASGYTGAEIVRLLANHP F IK+MTADRKAG+ GSVFPHLI+QDLP
Sbjct: 19 KSGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPN 78
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPH 178
+VAVKDADFSNVDAVFC LPHGTTQEIIKGLP+ LKIVDLSADFRLRD++EY EWYG H
Sbjct: 79 LVAVKDADFSNVDAVFCXLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSH 138
Query: 179 IAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAK 238
AP+LQ+EAVYGLTE+ R +I+NARLVANPGCYPTSIQLPLVPLI+A LI+ NIIIDAK
Sbjct: 139 RAPELQQEAVYGLTEVLRNEIRNARLVANPGCYPTSIQLPLVPLIKAKLIKVSNIIIDAK 198
Query: 239 SGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPM 298
SGVSGAGRGAKEANLY+EIAEGI++YG+ HRHVPEIEQGL+ A SKVT+SFTP+L+ M
Sbjct: 199 SGVSGAGRGAKEANLYTEIAEGIHAYGIKGHRHVPEIEQGLSEAAESKVTISFTPNLICM 258
>pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
Length = 351
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 148/234 (63%), Gaps = 3/234 (1%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK 123
+R G++GA+GYTG E+VRLL NHP I +++ AG+ + +FP + + + +
Sbjct: 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 73
Query: 124 DADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183
N D +F LP G + ++++ L K +KI+DL ADFR D Y EWYG+ ++
Sbjct: 74 KVS-KNCDVLFTALPAGASYDLVREL-KGVKIIDLGADFRFDDPGVYREWYGK-ELSGYE 130
Query: 184 QKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSG 243
+ VYGL E+ RE+IKNA++V NPGCYPTS+ L L P ++ NL+ I++DAKSGVSG
Sbjct: 131 NIKRVYGLPELHREEIKNAQVVGNPGCYPTSVILALAPALKHNLVDPETILVDAKSGVSG 190
Query: 244 AGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMP 297
AGR K L+SE+ E + Y V +HRHVPE EQ L + KV V FTPHL+P
Sbjct: 191 AGRKEKVDYLFSEVNESLRPYNVAKHRHVPEXEQELGKISGKKVNVVFTPHLVP 244
>pdb|3DR3|A Chain A, Structure Of Idp00107, A Potential N-Acetyl-Gamma-
Glutamylphosphate Reductase From Shigella Flexneri
Length = 337
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 131/243 (53%), Gaps = 15/243 (6%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLIS-QD 115
S + ++GASGY GAE+V + HP+ I +T + AG+ I + P L +
Sbjct: 1 SNAMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVE 60
Query: 116 LPTMVAVKDADFS-NVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEW 173
LP ++FS VD VF H + ++ + L + DLS FR+ D + YE++
Sbjct: 61 LPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKY 120
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI 233
YG H P+L ++A YGL E +K A L+A PGCYPT+ QL L PLI A+L+
Sbjct: 121 YGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQW 180
Query: 234 -IIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFT 292
+I+A SGVSGAGR A +N + E++ + YGV HRH PEI L V FT
Sbjct: 181 PVINATSGVSGAGRKAAISNSFCEVS--LQPYGVFTHRHQPEIATHL------GADVIFT 232
Query: 293 PHL 295
PHL
Sbjct: 233 PHL 235
>pdb|2G17|A Chain A, The Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase From Salmonella Typhimurium
Length = 337
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLIS-QDLPTMVAVK 123
++GASGY GAE+V + HP+ I +T + AG+ I + P L DLP
Sbjct: 9 IVGASGYAGAELVSYVNRHPHXTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPXSD 68
Query: 124 DADFS-NVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
DFS +VD VF H + ++ + L + DLS FR+ D + YE++YG H P
Sbjct: 69 VRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYP 128
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI-IIDAKSG 240
+L ++AVYGL E + + + A L+A PGCYPT+ QL L PLI L+ +I+A SG
Sbjct: 129 ELLEQAVYGLAEWNVDKLNTANLIAVPGCYPTAAQLSLKPLIDGGLLDLTQWPVINATSG 188
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHL 295
VSGAGR A +N + E++ + YGV HRH PEI L V FTPHL
Sbjct: 189 VSGAGRKAAISNSFCEVS--LQPYGVFTHRHQPEIAVHLGA------EVIFTPHL 235
>pdb|2I3A|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3G|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis In
Complex With Nadp+.
pdb|2I3G|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis In
Complex With Nadp+
Length = 352
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 130/250 (52%), Gaps = 14/250 (5%)
Query: 56 KTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFG-----IKLMTADRKAGQSIGSVFPH 110
+ ++ ++ + GASGY G EI+RLL HP + I +TA AG ++G PH
Sbjct: 2 QNRQVANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPH 61
Query: 111 LISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY 170
L + + A DAVF LPHG + + + L I+D ADFRL D + +
Sbjct: 62 LTPLAHRVVEPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVW 121
Query: 171 EEWYGQPHIAPDLQKEAVYGLTEI--SREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
E +YG H YGL E+ +R+ ++ R +A PGCYPT+ L L P + A+LI
Sbjct: 122 ERFYGSSH-----AGSWPYGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLI 176
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASSKV 287
+ + + A SG SGAGR A L +E+ +Y + HRH PEI QGL V
Sbjct: 177 E-PAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDV 235
Query: 288 TVSFTPHLMP 297
+VSFTP L+P
Sbjct: 236 SVSFTPVLIP 245
>pdb|2NQT|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis At
1.58 A Resolution
pdb|2NQT|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis At
1.58 A Resolution
Length = 352
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 129/250 (51%), Gaps = 14/250 (5%)
Query: 56 KTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFG-----IKLMTADRKAGQSIGSVFPH 110
+ ++ ++ + GASGY G EI+RLL HP + I +TA AG ++G PH
Sbjct: 2 QNRQVANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPH 61
Query: 111 LISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY 170
L + + A DAVF LPHG + + + L I+D ADFRL D + +
Sbjct: 62 LTPLAHRVVEPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVW 121
Query: 171 EEWYGQPHIAPDLQKEAVYGLTEI--SREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
E +YG H YGL E+ +R+ ++ R +A PG YPT+ L L P + A+LI
Sbjct: 122 ERFYGSSH-----AGSWPYGLPELPGARDQLRGTRRIAVPGXYPTAALLALFPALAADLI 176
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASSKV 287
+ + + A SG SGAGR A L +E+ +Y + HRH PEI QGL V
Sbjct: 177 E-PAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDV 235
Query: 288 TVSFTPHLMP 297
+VSFTP L+P
Sbjct: 236 SVSFTPVLIP 245
>pdb|2OZP|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Ttha1904) From Thermus Thermophilus
Length = 345
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 122/242 (50%), Gaps = 5/242 (2%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA 125
+ ++GASGY G E +RL +HPY +K +T+ R AG+ + V P+L + + V
Sbjct: 7 LSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRT--NLKFVPPE 64
Query: 126 DFSNVDAVFCCLPHGT-TQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQ 184
D + LPHG +E + + +VDLSADFRL+D Y +YG+ H PDL
Sbjct: 65 KLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGE-HPRPDLL 123
Query: 185 KEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGA 244
VY + E+ RE +K A +A GC T+ L L PL++A +++ I + S
Sbjct: 124 GRFVYAVPELYREALKGADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLLISTSAG 183
Query: 245 GRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304
G A A+ + E A I Y T HRH E+ + L G +T T + ++ + +
Sbjct: 184 GAEASPASHHPERAGSIRVYKPTGHRHTAEVVENLPGRPEVHLTAIATDRVRGILXTA-Q 242
Query: 305 CF 306
CF
Sbjct: 243 CF 244
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 20/192 (10%)
Query: 63 QVRIGLLGASGYTGAEIVRLLANHPYFG-IKLMTADRKAGQSIGSVFPHLISQDLPT--- 118
++++ LLG++G G ++V++LA HPY +K+ + K G+ + D+P
Sbjct: 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQ 63
Query: 119 ---MVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSAD-FRLR-DVSEYEEW 173
+V+ D +VD V LP+ + I L K+ KIV +A FR+ DV
Sbjct: 64 DLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDV------ 117
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI 233
P I P++ E + L LV NP C + +P+ PLI+ + I
Sbjct: 118 ---PLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIE--IATKSKI 172
Query: 234 IIDAKSGVSGAG 245
II VSGAG
Sbjct: 173 IITTLQAVSGAG 184
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 59 KSEK-QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDL 116
K EK ++++G+LGA+G G V+LLA+HP F + + A +R AG+ +D+
Sbjct: 3 KGEKXKIKVGVLGATGSVGQRFVQLLADHPXFELTALAASERSAGKKYKDACYWFQDRDI 62
Query: 117 PTMVA--------VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVS 168
P + K +F +VD VF LP ++ K K++ + S
Sbjct: 63 PENIKDXVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLI-------FSNAS 115
Query: 169 EYEEWYGQPHIAPDLQKEAVYGLTEISREDIK-NARLVANPGCYPTSIQLPLVPLIQANL 227
Y P + P++ + + L EI RE + ++ NP C + L P+ +
Sbjct: 116 AYRXEEDVPLVIPEVNADHLE-LIEIQREKRGWDGAIITNPNCSTICAVITLKPI--XDK 172
Query: 228 IQYRNIIIDAKSGVSGAG 245
+ I VSGAG
Sbjct: 173 FGLEAVFIATXQAVSGAG 190
>pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPM|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|E Chain E, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|F Chain F, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPL|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
Length = 359
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 17/166 (10%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+ ++ +LGA+G G E VR+L+NHPY + G+ G V +P +A
Sbjct: 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA 65
Query: 122 ---VKDAD---FSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLR-DVSEYEEW 173
+K D +VD +F LP G + + K ++ S D R DV
Sbjct: 66 DMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDV------ 119
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPL 219
P + P+L + + E + +V P C +PL
Sbjct: 120 ---PLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPL 162
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 64 VRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+R+ ++GA+G G EI+++L N P ++L + R AG + + + LP
Sbjct: 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPE--- 57
Query: 122 VKDADFSNVDAVFCCLPHGTTQ-EIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
VD V G ++ + + +VD S+ +R YE W P +
Sbjct: 58 ----GPLPVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWR------YEPWV--PLVV 105
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
P++ +E ++ ++ ++ANP C + + L PL +A Q + +I+
Sbjct: 106 PEVNREKIF----------QHRGIIANPNCTTAILAMALWPLHRA--FQAKRVIVATYQA 153
Query: 241 VSGAGRGAKE 250
SGAG A E
Sbjct: 154 ASGAGAKAME 163
>pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GZ1|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ1|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ2|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ2|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ3|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|3PWK|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWK|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PYL|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|C Chain C, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|D Chain D, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYX|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PYX|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PZB|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3PZB|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3Q11|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q11|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q1L|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|C Chain C, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|D Chain D, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
Length = 366
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 66 IGLLGASGYTGAEIVRLL--ANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK 123
+ ++GA+G GA+++++L + P I+ + + R AG+S+ QD+ T+
Sbjct: 5 VAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL-----KFKDQDI-TIEETT 58
Query: 124 DADFSNVD-AVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLR-DVSEYEEWYGQPHIAP 181
+ F VD A+F + + + + +VD ++ FR DV P + P
Sbjct: 59 ETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDV---------PLVVP 109
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGV 241
++ A+ D N ++A P C + + L P+ Q + II+ V
Sbjct: 110 EVNAHAL---------DAHNG-IIACPNCSTIQMMVALEPVRQKWGLD--RIIVSTYQAV 157
Query: 242 SGAGRGA 248
SGAG GA
Sbjct: 158 SGAGMGA 164
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 32/203 (15%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM 119
+Q + + GA+G G ++ +L P + L+ ++R G++ + + +
Sbjct: 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKT------YRFNGKTVRV 55
Query: 120 VAVKDADFSNVD-AVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPH 178
V++ D+S V A+F + + + ++D ++ FR Y P
Sbjct: 56 QNVEEFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYD--------YDIPL 107
Query: 179 IAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQA------NLIQYRN 232
+ P++ EA+ + +N ++ANP C + + L P+ A N+ Y++
Sbjct: 108 VVPEVNPEAI--------AEFRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQS 159
Query: 233 IIIDAKSGVSG-AGRGAKEANLY 254
+ K+G+ AG+ AK N Y
Sbjct: 160 VSGAGKAGIDELAGQTAKLLNGY 182
>pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
pdb|3HSK|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
Length = 381
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGS--------VFPHLISQD 115
+ G+LGA+G G + LL+ HP F I + A R AG+ P QD
Sbjct: 21 KAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPE-TEQD 79
Query: 116 LPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRL-RDVSEYEEW 173
+ + +F D VF L +I K ++ L +V + ++R +DV
Sbjct: 80 IVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPI 139
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQ 224
HI D+ + V +S+ K ++ C + PL PL++
Sbjct: 140 VNPEHI--DVVENKVK--QAVSKGGKKPGFIICISNCSTAGLVAPLKPLVE 186
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 157 DLSADFR-LRDVSEYEEWYGQPHIA---PDLQKEAVYGLTEISREDIKNARLVANPGCYP 212
D+SA FR R EEW + P+L YGL + ED R + NP
Sbjct: 57 DVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGLFGLPPEDHARVRKLVNPSFTS 116
Query: 213 TSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHV 272
+I L++A + + + ++DA+S G +E ++ + AEGI ++ V
Sbjct: 117 RAID-----LLRAEIQRTVDQLLDARS-------GQEEFDVVRDYAEGIPMRAISALLKV 164
Query: 273 P-EIEQGLTGFASS 285
P E ++ F S+
Sbjct: 165 PAECDEKFRRFGSA 178
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 157 DLSADFR-LRDVSEYEEWYGQPHIA---PDLQKEAVYGLTEISREDIKNARLVANPGCYP 212
D+SA FR R EEW + P+L YGL + ED R + NP
Sbjct: 57 DVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGLFGLPPEDHARVRKLVNPSFTS 116
Query: 213 TSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHV 272
+I L++A + + + ++DA+S G +E ++ + AEGI ++ V
Sbjct: 117 RAID-----LLRAEIQRTVDQLLDARS-------GQEEFDVVRDYAEGIPMRAISALLKV 164
Query: 273 P-EIEQGLTGFASS 285
P E ++ F S+
Sbjct: 165 PAECDEKFRRFGSA 178
>pdb|3O3M|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 408
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 70 GASGYTGAEIVRLLAN----HPYFGIKLMTADRKAGQSIGSVFPHLIS-----QDLPTMV 120
G S + G E R++ PY G K+ T + GSV+PH + DL M
Sbjct: 248 GKSSFRGEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGSVYPHAWALQYEVNDLDGMA 307
Query: 121 AVKDADFSNVD 131
F+NV+
Sbjct: 308 VAYSTMFNNVN 318
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+I +LGA+G G+ IV + + ++ +KA +G+ L+ + L + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPL----VLTE 57
Query: 125 ADFSNVDAVFCCL 137
AD +VDAV L
Sbjct: 58 ADLDSVDAVVDAL 70
>pdb|4E0T|A Chain A, Crystal Structure Of Cdpnpt In Its Unbound State
pdb|4E0T|B Chain B, Crystal Structure Of Cdpnpt In Its Unbound State
pdb|4E0T|C Chain C, Crystal Structure Of Cdpnpt In Its Unbound State
pdb|4E0T|D Chain D, Crystal Structure Of Cdpnpt In Its Unbound State
pdb|4E0U|A Chain A, Crystal Structure Of Cdpnpt In Complex With
Thiolodiphosphate And (S)- Benzodiazependione
pdb|4E0U|B Chain B, Crystal Structure Of Cdpnpt In Complex With
Thiolodiphosphate And (S)- Benzodiazependione
Length = 428
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 149 LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197
+PK + L+ D+ +Y+ W+ H+AP L K V G I ++
Sbjct: 22 IPKDIAYHTLTKALLFPDIDQYQHWH---HVAPMLAKMLVDGKYSIHQQ 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,765,943
Number of Sequences: 62578
Number of extensions: 354265
Number of successful extensions: 869
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 23
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)