Query 021865
Match_columns 306
No_of_seqs 214 out of 1674
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0002 ArgC Acetylglutamate s 100.0 7.8E-79 1.7E-83 579.3 18.4 243 62-305 1-248 (349)
2 PLN02968 Probable N-acetyl-gam 100.0 7.9E-71 1.7E-75 537.1 22.3 249 57-305 32-280 (381)
3 TIGR01850 argC N-acetyl-gamma- 100.0 1.1E-67 2.4E-72 509.0 19.8 242 64-305 1-245 (346)
4 PRK00436 argC N-acetyl-gamma-g 100.0 4.4E-62 9.6E-67 469.6 21.1 241 62-305 1-242 (343)
5 TIGR01851 argC_other N-acetyl- 100.0 2.2E-60 4.7E-65 451.1 17.0 200 64-304 2-211 (310)
6 PRK11863 N-acetyl-gamma-glutam 100.0 4.8E-60 1.1E-64 450.2 17.4 203 62-305 1-211 (313)
7 PRK08040 putative semialdehyde 100.0 1.5E-57 3.2E-62 437.3 17.5 215 61-305 2-246 (336)
8 PRK05671 aspartate-semialdehyd 100.0 1.8E-54 4E-59 416.0 17.8 214 60-305 1-247 (336)
9 PLN02383 aspartate semialdehyd 100.0 2.4E-54 5.3E-59 416.4 16.5 217 62-305 6-255 (344)
10 TIGR00978 asd_EA aspartate-sem 100.0 5.5E-54 1.2E-58 412.8 17.7 226 64-304 1-241 (341)
11 PRK08664 aspartate-semialdehyd 100.0 7.8E-52 1.7E-56 399.0 19.6 227 62-304 2-244 (349)
12 KOG4354 N-acetyl-gamma-glutamy 100.0 2.4E-51 5.2E-56 373.8 11.5 230 46-303 2-238 (340)
13 PRK14874 aspartate-semialdehyd 100.0 6.2E-50 1.3E-54 383.9 16.2 215 63-305 1-247 (334)
14 TIGR01296 asd_B aspartate-semi 100.0 5.1E-47 1.1E-51 364.8 14.8 213 65-304 1-249 (339)
15 PRK06728 aspartate-semialdehyd 100.0 1.1E-44 2.4E-49 349.1 17.3 216 62-305 4-255 (347)
16 PRK06598 aspartate-semialdehyd 100.0 1.8E-42 3.8E-47 335.8 14.5 216 63-305 1-278 (369)
17 COG0136 Asd Aspartate-semialde 100.0 6.6E-38 1.4E-42 298.7 17.8 221 63-305 1-247 (334)
18 PRK06901 aspartate-semialdehyd 100.0 3.8E-37 8.3E-42 292.7 15.3 215 63-305 3-232 (322)
19 TIGR01745 asd_gamma aspartate- 100.0 1.8E-35 4E-40 286.3 16.0 217 64-305 1-276 (366)
20 KOG4777 Aspartate-semialdehyde 100.0 3.6E-31 7.9E-36 243.3 8.2 231 64-305 4-253 (361)
21 PF01118 Semialdhyde_dh: Semia 100.0 7.8E-30 1.7E-34 211.0 6.1 119 65-202 1-121 (121)
22 PRK13535 erythrose 4-phosphate 99.8 2.9E-19 6.4E-24 172.1 16.2 212 63-304 1-244 (336)
23 PRK04207 glyceraldehyde-3-phos 99.8 8.1E-19 1.8E-23 169.4 18.2 207 63-305 1-223 (341)
24 PF02774 Semialdhyde_dhC: Semi 99.8 5.8E-20 1.3E-24 162.8 4.7 86 219-305 1-110 (184)
25 TIGR01532 E4PD_g-proteo D-eryt 99.8 3.1E-18 6.6E-23 164.6 14.4 210 65-304 1-242 (325)
26 PRK08300 acetaldehyde dehydrog 99.7 1.2E-17 2.7E-22 158.7 10.6 164 61-251 2-171 (302)
27 PRK08955 glyceraldehyde-3-phos 99.7 7E-17 1.5E-21 155.7 15.9 215 63-304 2-242 (334)
28 PLN03096 glyceraldehyde-3-phos 99.7 9.2E-17 2E-21 157.4 16.6 208 62-304 59-302 (395)
29 PLN02358 glyceraldehyde-3-phos 99.7 2.8E-16 6.1E-21 151.7 17.0 211 63-304 5-247 (338)
30 PRK15425 gapA glyceraldehyde-3 99.7 1.9E-15 4.1E-20 145.5 16.8 211 63-304 2-241 (331)
31 smart00859 Semialdhyde_dh Semi 99.7 4.1E-16 9E-21 128.4 9.7 114 65-200 1-121 (122)
32 TIGR01534 GAPDH-I glyceraldehy 99.6 7.5E-15 1.6E-19 141.3 16.0 211 65-304 1-242 (327)
33 PTZ00023 glyceraldehyde-3-phos 99.6 8.9E-15 1.9E-19 141.1 16.0 212 63-304 2-245 (337)
34 PRK07403 glyceraldehyde-3-phos 99.6 2.9E-14 6.2E-19 137.6 16.0 214 63-304 1-244 (337)
35 PLN02272 glyceraldehyde-3-phos 99.5 7.4E-14 1.6E-18 137.9 14.9 209 63-304 85-326 (421)
36 PRK07729 glyceraldehyde-3-phos 99.5 4.7E-13 1E-17 129.4 17.3 212 63-304 2-242 (343)
37 TIGR03215 ac_ald_DH_ac acetald 99.4 5.8E-13 1.3E-17 126.1 11.8 160 64-252 2-166 (285)
38 PLN02237 glyceraldehyde-3-phos 99.4 7.8E-12 1.7E-16 124.0 14.3 213 62-302 74-317 (442)
39 PTZ00353 glycosomal glyceralde 99.3 5.2E-11 1.1E-15 115.3 16.4 208 64-304 3-245 (342)
40 PRK08289 glyceraldehyde-3-phos 98.9 2.5E-08 5.4E-13 99.8 14.7 217 61-304 125-379 (477)
41 PF01113 DapB_N: Dihydrodipico 98.0 1.1E-05 2.5E-10 67.1 5.9 92 64-157 1-96 (124)
42 KOG4039 Serine/threonine kinas 98.0 6.7E-06 1.5E-10 73.6 4.0 78 60-140 15-94 (238)
43 PRK00048 dihydrodipicolinate r 98.0 2.8E-05 6E-10 72.5 8.3 88 63-157 1-89 (257)
44 PF13460 NAD_binding_10: NADH( 97.9 1.1E-05 2.4E-10 69.4 4.9 95 66-166 1-104 (183)
45 TIGR01921 DAP-DH diaminopimela 97.8 5.5E-05 1.2E-09 73.2 7.7 87 63-158 3-90 (324)
46 PRK13303 L-aspartate dehydroge 97.8 6.1E-05 1.3E-09 70.5 7.1 92 63-160 1-93 (265)
47 CHL00194 ycf39 Ycf39; Provisio 97.8 5.2E-05 1.1E-09 71.7 6.7 95 64-160 1-110 (317)
48 COG4569 MhpF Acetaldehyde dehy 97.8 3.1E-05 6.7E-10 70.7 4.8 138 61-223 2-146 (310)
49 TIGR00036 dapB dihydrodipicoli 97.7 0.0001 2.2E-09 69.2 7.9 98 63-162 1-102 (266)
50 TIGR01546 GAPDH-II_archae glyc 97.7 0.00044 9.5E-09 67.2 11.7 201 66-303 1-218 (333)
51 PLN02819 lysine-ketoglutarate 97.5 0.00016 3.5E-09 79.3 6.0 98 60-159 566-679 (1042)
52 PRK13302 putative L-aspartate 97.4 0.00029 6.4E-09 66.3 6.6 92 61-159 4-98 (271)
53 PF05368 NmrA: NmrA-like famil 97.4 9.2E-05 2E-09 66.6 2.2 96 66-163 1-108 (233)
54 COG0057 GapA Glyceraldehyde-3- 97.3 0.0098 2.1E-07 57.7 15.4 210 63-303 1-241 (335)
55 COG1748 LYS9 Saccharopine dehy 97.3 0.0003 6.5E-09 69.7 5.2 181 63-276 1-197 (389)
56 PF03435 Saccharop_dh: Sacchar 97.3 0.00025 5.5E-09 69.1 4.3 93 66-160 1-99 (386)
57 PLN02427 UDP-apiose/xylose syn 97.2 0.0005 1.1E-08 66.7 5.5 37 59-95 10-46 (386)
58 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.00066 1.4E-08 60.0 4.9 97 63-162 28-132 (194)
59 PRK11579 putative oxidoreducta 97.1 0.0017 3.6E-08 62.6 7.9 89 61-156 2-92 (346)
60 PLN03209 translocon at the inn 97.1 0.0015 3.2E-08 67.8 7.8 32 64-96 81-112 (576)
61 PF10727 Rossmann-like: Rossma 97.1 0.00065 1.4E-08 57.4 4.2 97 60-165 7-110 (127)
62 PRK13304 L-aspartate dehydroge 97.1 0.0011 2.4E-08 62.1 6.0 90 63-160 1-93 (265)
63 COG0289 DapB Dihydrodipicolina 97.0 0.0032 6.9E-08 59.3 8.9 97 62-160 1-102 (266)
64 COG0673 MviM Predicted dehydro 97.0 0.0013 2.9E-08 62.1 6.3 92 61-156 1-95 (342)
65 PRK11199 tyrA bifunctional cho 97.0 0.0016 3.5E-08 63.9 7.2 84 56-161 91-177 (374)
66 PRK08818 prephenate dehydrogen 97.0 0.0028 6.1E-08 62.5 8.4 80 63-161 4-90 (370)
67 PRK14982 acyl-ACP reductase; P 97.0 0.00081 1.8E-08 65.6 4.6 91 63-160 155-247 (340)
68 TIGR03649 ergot_EASG ergot alk 97.0 0.0022 4.8E-08 59.2 7.1 91 65-161 1-106 (285)
69 PF01408 GFO_IDH_MocA: Oxidore 96.9 0.00099 2.1E-08 53.7 3.7 85 64-156 1-90 (120)
70 PLN02695 GDP-D-mannose-3',5'-e 96.9 0.002 4.4E-08 62.6 6.6 40 55-95 13-52 (370)
71 TIGR01915 npdG NADPH-dependent 96.9 0.0018 3.9E-08 58.6 5.7 99 64-165 1-107 (219)
72 PRK07679 pyrroline-5-carboxyla 96.9 0.0027 5.9E-08 59.4 7.0 163 64-248 4-180 (279)
73 PRK06444 prephenate dehydrogen 96.9 0.0035 7.5E-08 56.7 7.3 60 64-160 1-60 (197)
74 KOG1502 Flavonol reductase/cin 96.8 0.0019 4E-08 62.7 5.3 74 62-137 5-86 (327)
75 PLN02256 arogenate dehydrogena 96.8 0.0035 7.5E-08 60.1 7.1 91 59-160 32-128 (304)
76 PRK11908 NAD-dependent epimera 96.8 0.0016 3.4E-08 62.1 4.7 33 63-95 1-33 (347)
77 COG2910 Putative NADH-flavin r 96.7 0.0031 6.8E-08 56.9 5.5 71 64-140 1-73 (211)
78 PRK07417 arogenate dehydrogena 96.7 0.0045 9.7E-08 58.1 6.8 88 64-160 1-92 (279)
79 PRK08655 prephenate dehydrogen 96.7 0.0039 8.5E-08 62.6 6.7 89 64-160 1-93 (437)
80 PF04321 RmlD_sub_bind: RmlD s 96.7 0.0029 6.2E-08 59.5 5.4 86 64-166 1-107 (286)
81 PRK08125 bifunctional UDP-gluc 96.6 0.0046 1E-07 64.8 7.1 42 54-95 306-347 (660)
82 PRK07634 pyrroline-5-carboxyla 96.6 0.0032 6.9E-08 57.2 5.1 104 61-175 2-112 (245)
83 COG0702 Predicted nucleoside-d 96.6 0.0022 4.8E-08 57.9 4.1 70 64-138 1-72 (275)
84 cd05294 LDH-like_MDH_nadp A la 96.6 0.0054 1.2E-07 58.7 6.9 74 64-138 1-81 (309)
85 smart00846 Gp_dh_N Glyceraldeh 96.6 0.017 3.8E-07 49.8 9.4 32 64-96 1-32 (149)
86 PLN00141 Tic62-NAD(P)-related 96.6 0.0035 7.6E-08 57.1 5.1 34 61-95 15-48 (251)
87 PF03807 F420_oxidored: NADP o 96.6 0.0018 3.9E-08 50.4 2.8 89 65-160 1-95 (96)
88 PRK14618 NAD(P)H-dependent gly 96.5 0.0052 1.1E-07 58.7 6.4 101 61-163 2-108 (328)
89 PLN02166 dTDP-glucose 4,6-dehy 96.5 0.0089 1.9E-07 59.9 8.2 32 63-95 120-151 (436)
90 TIGR03466 HpnA hopanoid-associ 96.5 0.0035 7.7E-08 58.2 4.9 73 64-138 1-73 (328)
91 PRK11559 garR tartronate semia 96.5 0.0059 1.3E-07 57.3 6.2 89 63-162 2-99 (296)
92 COG0345 ProC Pyrroline-5-carbo 96.5 0.0061 1.3E-07 57.6 6.2 163 63-248 1-175 (266)
93 PLN02206 UDP-glucuronate decar 96.4 0.01 2.3E-07 59.5 7.8 33 62-95 118-150 (442)
94 PF03446 NAD_binding_2: NAD bi 96.4 0.0021 4.5E-08 55.6 2.4 91 63-163 1-98 (163)
95 PLN02657 3,8-divinyl protochlo 96.4 0.0046 9.9E-08 60.8 4.9 36 59-95 56-91 (390)
96 COG0287 TyrA Prephenate dehydr 96.4 0.012 2.5E-07 56.0 7.5 94 62-161 2-100 (279)
97 PRK08306 dipicolinate synthase 96.4 0.0076 1.6E-07 57.5 6.3 92 63-162 152-244 (296)
98 PRK11880 pyrroline-5-carboxyla 96.3 0.0061 1.3E-07 56.3 5.4 102 62-175 1-107 (267)
99 PLN00016 RNA-binding protein; 96.3 0.008 1.7E-07 58.4 6.4 104 56-162 45-167 (378)
100 cd01336 MDH_cytoplasmic_cytoso 96.3 0.0095 2.1E-07 57.6 6.7 73 63-139 2-88 (325)
101 COG2085 Predicted dinucleotide 96.3 0.01 2.2E-07 54.3 6.5 90 63-161 1-95 (211)
102 PTZ00434 cytosolic glyceraldeh 96.3 0.092 2E-06 51.7 13.4 209 62-302 2-257 (361)
103 PRK15181 Vi polysaccharide bio 96.3 0.006 1.3E-07 58.5 5.2 33 62-95 14-46 (348)
104 PRK07502 cyclohexadienyl dehyd 96.3 0.013 2.8E-07 55.6 7.4 91 63-161 6-102 (307)
105 PRK11064 wecC UDP-N-acetyl-D-m 96.3 0.012 2.6E-07 58.6 7.5 96 63-162 3-122 (415)
106 PF00056 Ldh_1_N: lactate/mala 96.2 0.0034 7.5E-08 53.4 3.0 74 64-139 1-79 (141)
107 PRK00094 gpsA NAD(P)H-dependen 96.2 0.012 2.7E-07 55.4 7.0 100 63-164 1-110 (325)
108 TIGR02853 spore_dpaA dipicolin 96.2 0.0086 1.9E-07 56.9 5.9 92 64-163 152-244 (287)
109 PLN02662 cinnamyl-alcohol dehy 96.2 0.0064 1.4E-07 56.7 4.8 31 64-95 5-35 (322)
110 PRK05447 1-deoxy-D-xylulose 5- 96.2 0.0068 1.5E-07 60.1 5.1 94 63-156 1-119 (385)
111 TIGR00872 gnd_rel 6-phosphoglu 96.1 0.015 3.3E-07 55.1 6.9 93 64-163 1-97 (298)
112 PLN02986 cinnamyl-alcohol dehy 96.1 0.0085 1.8E-07 56.3 5.0 32 64-96 6-37 (322)
113 PRK09987 dTDP-4-dehydrorhamnos 96.1 0.015 3.2E-07 54.6 6.7 89 64-166 1-110 (299)
114 PRK06476 pyrroline-5-carboxyla 96.0 0.0096 2.1E-07 55.0 5.0 102 64-175 1-106 (258)
115 PRK07680 late competence prote 96.0 0.011 2.3E-07 55.2 5.1 102 64-175 1-109 (273)
116 PRK06349 homoserine dehydrogen 96.0 0.019 4.2E-07 57.4 7.2 90 62-157 2-102 (426)
117 PF01073 3Beta_HSD: 3-beta hyd 96.0 0.0081 1.8E-07 56.6 4.3 68 68-137 2-74 (280)
118 COG1091 RfbD dTDP-4-dehydrorha 96.0 0.011 2.3E-07 56.4 5.1 110 64-198 1-133 (281)
119 PF01488 Shikimate_DH: Shikima 95.9 0.0061 1.3E-07 51.3 3.0 95 62-159 11-109 (135)
120 cd01065 NAD_bind_Shikimate_DH 95.9 0.0096 2.1E-07 50.0 4.3 94 63-161 19-118 (155)
121 TIGR01214 rmlD dTDP-4-dehydror 95.9 0.016 3.5E-07 53.1 5.9 30 65-95 1-30 (287)
122 PRK06270 homoserine dehydrogen 95.9 0.017 3.7E-07 56.0 6.3 93 62-157 1-123 (341)
123 PLN02775 Probable dihydrodipic 95.9 0.033 7.2E-07 53.2 7.9 99 61-160 9-113 (286)
124 PRK11150 rfaD ADP-L-glycero-D- 95.8 0.014 3E-07 54.4 5.3 31 66-97 2-32 (308)
125 TIGR03589 PseB UDP-N-acetylglu 95.8 0.0088 1.9E-07 56.9 3.8 33 63-95 4-37 (324)
126 PRK08229 2-dehydropantoate 2-r 95.8 0.032 6.9E-07 53.3 7.7 98 62-162 1-110 (341)
127 cd05213 NAD_bind_Glutamyl_tRNA 95.8 0.014 2.9E-07 55.9 5.1 92 62-160 177-274 (311)
128 PLN00198 anthocyanidin reducta 95.7 0.013 2.9E-07 55.4 4.8 34 61-95 7-40 (338)
129 PRK08507 prephenate dehydrogen 95.7 0.026 5.6E-07 52.7 6.6 88 64-160 1-92 (275)
130 COG0451 WcaG Nucleoside-diphos 95.7 0.02 4.4E-07 52.7 5.8 31 65-96 2-32 (314)
131 PRK08219 short chain dehydroge 95.7 0.0086 1.9E-07 52.6 3.1 31 63-95 3-33 (227)
132 PRK15461 NADH-dependent gamma- 95.7 0.017 3.8E-07 54.7 5.3 163 63-250 1-172 (296)
133 PRK12320 hypothetical protein; 95.6 0.029 6.3E-07 59.6 7.2 91 64-162 1-104 (699)
134 TIGR01761 thiaz-red thiazoliny 95.6 0.018 3.9E-07 56.2 5.0 85 63-156 3-94 (343)
135 PLN02712 arogenate dehydrogena 95.6 0.058 1.3E-06 57.1 9.1 90 60-160 49-144 (667)
136 PRK14619 NAD(P)H-dependent gly 95.5 0.036 7.8E-07 52.7 6.9 75 63-160 4-83 (308)
137 PLN02214 cinnamoyl-CoA reducta 95.5 0.025 5.5E-07 54.2 5.9 33 62-95 9-41 (342)
138 cd01080 NAD_bind_m-THF_DH_Cycl 95.5 0.034 7.4E-07 49.0 6.1 77 63-165 44-122 (168)
139 PRK15182 Vi polysaccharide bio 95.4 0.033 7.1E-07 55.8 6.6 97 63-162 6-123 (425)
140 PRK05472 redox-sensing transcr 95.4 0.039 8.4E-07 49.9 6.4 95 62-165 83-183 (213)
141 TIGR03026 NDP-sugDHase nucleot 95.4 0.038 8.3E-07 54.7 6.9 95 64-160 1-121 (411)
142 PRK10206 putative oxidoreducta 95.4 0.028 6.1E-07 54.4 5.8 89 63-156 1-92 (344)
143 PRK06545 prephenate dehydrogen 95.4 0.042 9E-07 53.6 7.0 91 65-161 2-97 (359)
144 PRK10217 dTDP-glucose 4,6-dehy 95.4 0.022 4.9E-07 54.1 5.0 25 63-87 1-25 (355)
145 PTZ00325 malate dehydrogenase; 95.4 0.052 1.1E-06 52.6 7.5 78 59-139 4-86 (321)
146 TIGR01181 dTDP_gluc_dehyt dTDP 95.4 0.016 3.6E-07 53.3 3.9 31 65-95 1-32 (317)
147 PRK09599 6-phosphogluconate de 95.4 0.04 8.6E-07 52.2 6.6 92 64-162 1-97 (301)
148 PF01370 Epimerase: NAD depend 95.4 0.005 1.1E-07 54.3 0.4 29 66-95 1-29 (236)
149 PLN02896 cinnamyl-alcohol dehy 95.3 0.019 4.1E-07 54.9 4.2 31 64-95 11-41 (353)
150 TIGR00518 alaDH alanine dehydr 95.3 0.031 6.6E-07 55.0 5.7 95 64-161 168-269 (370)
151 COG3804 Uncharacterized conser 95.3 0.065 1.4E-06 51.3 7.5 43 63-106 2-46 (350)
152 PLN02989 cinnamyl-alcohol dehy 95.2 0.029 6.2E-07 52.7 5.1 32 63-95 5-36 (325)
153 PRK06928 pyrroline-5-carboxyla 95.2 0.034 7.3E-07 52.3 5.4 103 63-175 1-111 (277)
154 TIGR01505 tartro_sem_red 2-hyd 95.2 0.031 6.7E-07 52.4 5.1 87 65-161 1-95 (291)
155 PRK05086 malate dehydrogenase; 95.1 0.06 1.3E-06 51.8 7.0 71 64-139 1-79 (312)
156 PLN02686 cinnamoyl-CoA reducta 95.1 0.017 3.7E-07 56.1 3.3 38 57-95 47-84 (367)
157 PRK06223 malate dehydrogenase; 95.0 0.034 7.4E-07 52.6 5.1 75 63-138 2-79 (307)
158 PLN02650 dihydroflavonol-4-red 95.0 0.029 6.3E-07 53.5 4.6 32 63-95 5-36 (351)
159 PRK05442 malate dehydrogenase; 95.0 0.052 1.1E-06 52.6 6.2 77 60-139 1-90 (326)
160 TIGR02130 dapB_plant dihydrodi 95.0 0.065 1.4E-06 51.0 6.6 91 64-160 1-102 (275)
161 PF02826 2-Hacid_dh_C: D-isome 95.0 0.029 6.3E-07 49.2 4.0 94 63-167 36-135 (178)
162 PF00044 Gp_dh_N: Glyceraldehy 94.9 0.051 1.1E-06 47.2 5.3 125 64-210 1-151 (151)
163 KOG1203 Predicted dehydrogenas 94.9 0.059 1.3E-06 53.9 6.4 44 55-99 71-114 (411)
164 PRK07201 short chain dehydroge 94.9 0.043 9.4E-07 56.7 5.7 33 64-96 1-34 (657)
165 COG5322 Predicted dehydrogenas 94.9 0.042 9.2E-07 52.4 5.1 154 64-225 168-323 (351)
166 cd01337 MDH_glyoxysomal_mitoch 94.9 0.075 1.6E-06 51.2 6.9 72 64-139 1-78 (310)
167 PF02670 DXP_reductoisom: 1-de 94.9 0.046 1E-06 46.4 4.8 36 66-101 1-37 (129)
168 PRK08293 3-hydroxybutyryl-CoA 94.9 0.049 1.1E-06 51.2 5.5 102 63-166 3-127 (287)
169 PF02629 CoA_binding: CoA bind 94.9 0.037 8E-07 43.8 4.0 86 62-156 2-90 (96)
170 TIGR01777 yfcH conserved hypot 94.8 0.067 1.5E-06 48.8 6.3 66 66-138 1-66 (292)
171 PRK12490 6-phosphogluconate de 94.8 0.07 1.5E-06 50.6 6.5 93 64-163 1-98 (299)
172 PLN02712 arogenate dehydrogena 94.8 0.071 1.5E-06 56.5 7.2 89 62-161 368-462 (667)
173 TIGR02197 heptose_epim ADP-L-g 94.8 0.033 7.2E-07 51.6 4.2 29 66-94 1-29 (314)
174 PLN00203 glutamyl-tRNA reducta 94.8 0.042 9.1E-07 56.6 5.2 96 63-161 266-371 (519)
175 PRK10084 dTDP-glucose 4,6 dehy 94.6 0.036 7.7E-07 52.7 4.0 29 64-92 1-29 (352)
176 cd00704 MDH Malate dehydrogena 94.6 0.081 1.8E-06 51.2 6.5 73 64-139 1-86 (323)
177 PRK15469 ghrA bifunctional gly 94.6 0.15 3.2E-06 49.1 8.2 93 63-167 136-234 (312)
178 PRK13301 putative L-aspartate 94.5 0.1 2.2E-06 49.5 6.6 92 63-163 2-98 (267)
179 PLN00106 malate dehydrogenase 94.5 0.099 2.2E-06 50.7 6.7 75 64-139 19-96 (323)
180 PRK15059 tartronate semialdehy 94.5 0.084 1.8E-06 50.1 6.1 87 64-161 1-95 (292)
181 TIGR01759 MalateDH-SF1 malate 94.5 0.089 1.9E-06 51.0 6.4 75 62-139 2-89 (323)
182 PRK05865 hypothetical protein; 94.5 0.091 2E-06 57.1 7.0 94 64-162 1-105 (854)
183 PF01210 NAD_Gly3P_dh_N: NAD-d 94.4 0.068 1.5E-06 45.9 4.8 97 65-163 1-107 (157)
184 cd01338 MDH_choloroplast_like 94.4 0.1 2.2E-06 50.5 6.5 74 63-139 2-88 (322)
185 PRK10675 UDP-galactose-4-epime 94.3 0.071 1.5E-06 50.2 5.3 31 64-95 1-31 (338)
186 PRK06046 alanine dehydrogenase 94.3 0.052 1.1E-06 52.3 4.4 95 62-161 128-225 (326)
187 PLN02778 3,5-epimerase/4-reduc 94.3 0.052 1.1E-06 51.3 4.3 33 59-92 5-37 (298)
188 PRK12439 NAD(P)H-dependent gly 94.3 0.091 2E-06 50.9 6.1 101 60-163 4-115 (341)
189 PLN02688 pyrroline-5-carboxyla 94.3 0.11 2.3E-06 47.9 6.3 163 64-248 1-175 (266)
190 PRK05808 3-hydroxybutyryl-CoA 94.3 0.068 1.5E-06 50.0 5.0 102 63-166 3-125 (282)
191 TIGR00243 Dxr 1-deoxy-D-xylulo 94.2 0.063 1.4E-06 53.3 4.8 40 63-102 1-41 (389)
192 PRK06522 2-dehydropantoate 2-r 94.2 0.19 4E-06 46.8 7.8 97 64-162 1-103 (304)
193 PRK12491 pyrroline-5-carboxyla 94.2 0.046 1E-06 51.4 3.7 101 64-175 3-110 (272)
194 PRK06179 short chain dehydroge 94.1 0.11 2.3E-06 47.3 5.9 32 63-95 4-35 (270)
195 PRK12480 D-lactate dehydrogena 94.1 0.15 3.2E-06 49.5 7.0 90 64-167 147-242 (330)
196 PRK00045 hemA glutamyl-tRNA re 94.1 0.095 2.1E-06 52.3 5.8 91 63-160 182-281 (423)
197 TIGR01472 gmd GDP-mannose 4,6- 94.1 0.068 1.5E-06 50.8 4.6 31 64-95 1-31 (343)
198 COG1712 Predicted dinucleotide 94.1 0.11 2.3E-06 48.4 5.7 151 64-248 1-154 (255)
199 PRK12829 short chain dehydroge 94.1 0.038 8.3E-07 49.7 2.8 34 62-96 10-43 (264)
200 cd05292 LDH_2 A subgroup of L- 94.0 0.1 2.2E-06 50.0 5.6 72 64-139 1-77 (308)
201 COG2344 AT-rich DNA-binding pr 93.9 0.077 1.7E-06 48.1 4.3 100 59-165 80-183 (211)
202 PRK14188 bifunctional 5,10-met 93.9 0.16 3.4E-06 48.9 6.7 75 63-162 158-233 (296)
203 PLN02350 phosphogluconate dehy 93.9 0.13 2.9E-06 52.6 6.5 174 61-249 4-188 (493)
204 PF03447 NAD_binding_3: Homose 93.8 0.068 1.5E-06 43.3 3.6 83 72-160 2-91 (117)
205 PRK09260 3-hydroxybutyryl-CoA 93.8 0.077 1.7E-06 49.8 4.4 100 64-165 2-123 (288)
206 PLN02696 1-deoxy-D-xylulose-5- 93.7 0.19 4.1E-06 51.0 7.2 42 60-101 54-96 (454)
207 PRK07326 short chain dehydroge 93.7 0.042 9.2E-07 48.7 2.3 31 64-95 7-37 (237)
208 PLN02353 probable UDP-glucose 93.6 0.13 2.9E-06 52.3 6.1 32 63-95 1-33 (473)
209 PRK05557 fabG 3-ketoacyl-(acyl 93.6 0.11 2.4E-06 45.9 4.8 32 64-96 6-37 (248)
210 PRK14175 bifunctional 5,10-met 93.6 0.24 5.3E-06 47.3 7.4 73 64-162 159-233 (286)
211 TIGR01963 PHB_DH 3-hydroxybuty 93.6 0.064 1.4E-06 47.9 3.3 32 64-96 2-33 (255)
212 PRK06436 glycerate dehydrogena 93.6 0.32 6.9E-06 46.7 8.2 90 63-167 122-217 (303)
213 PRK08605 D-lactate dehydrogena 93.5 0.21 4.5E-06 48.4 7.0 91 64-166 147-243 (332)
214 PRK12826 3-ketoacyl-(acyl-carr 93.5 0.07 1.5E-06 47.4 3.4 32 63-95 6-37 (251)
215 TIGR02622 CDP_4_6_dhtase CDP-g 93.5 0.099 2.1E-06 49.9 4.6 32 63-95 4-35 (349)
216 PRK05993 short chain dehydroge 93.5 0.12 2.5E-06 47.7 5.0 33 62-95 3-35 (277)
217 PRK05866 short chain dehydroge 93.5 0.066 1.4E-06 50.2 3.3 31 64-95 41-71 (293)
218 PRK14194 bifunctional 5,10-met 93.4 0.17 3.8E-06 48.7 6.1 74 64-163 160-235 (301)
219 PRK15057 UDP-glucose 6-dehydro 93.4 0.25 5.4E-06 49.0 7.4 96 64-162 1-120 (388)
220 TIGR02992 ectoine_eutC ectoine 93.4 0.1 2.2E-06 50.3 4.5 95 63-161 129-226 (326)
221 TIGR01035 hemA glutamyl-tRNA r 93.3 0.11 2.5E-06 51.7 4.9 90 63-159 180-277 (417)
222 TIGR02371 ala_DH_arch alanine 93.3 0.12 2.6E-06 49.9 4.9 95 62-161 127-224 (325)
223 PF13380 CoA_binding_2: CoA bi 93.3 0.22 4.7E-06 41.0 5.8 76 64-153 1-80 (116)
224 COG0039 Mdh Malate/lactate deh 93.3 0.26 5.6E-06 47.8 7.1 71 64-137 1-77 (313)
225 PRK08267 short chain dehydroge 93.2 0.044 9.6E-07 49.6 1.7 32 63-95 1-32 (260)
226 PRK09009 C factor cell-cell si 93.2 0.16 3.5E-06 45.1 5.3 31 64-94 1-32 (235)
227 TIGR00507 aroE shikimate 5-deh 93.2 0.16 3.4E-06 47.5 5.4 92 63-160 117-215 (270)
228 PLN02583 cinnamoyl-CoA reducta 93.2 0.14 3.1E-06 47.9 5.0 32 63-95 6-37 (297)
229 PRK07819 3-hydroxybutyryl-CoA 93.1 0.18 3.8E-06 47.8 5.6 103 62-166 4-128 (286)
230 PLN02572 UDP-sulfoquinovose sy 93.1 0.15 3.2E-06 51.2 5.4 36 58-94 42-77 (442)
231 PRK05565 fabG 3-ketoacyl-(acyl 93.1 0.069 1.5E-06 47.3 2.7 31 63-94 5-35 (247)
232 PTZ00142 6-phosphogluconate de 93.1 0.22 4.7E-06 50.7 6.5 97 63-162 1-104 (470)
233 PRK06130 3-hydroxybutyryl-CoA 93.0 0.21 4.6E-06 47.2 6.1 33 61-95 2-34 (311)
234 PRK08264 short chain dehydroge 93.0 0.18 3.8E-06 44.8 5.2 32 64-95 7-38 (238)
235 PRK07574 formate dehydrogenase 93.0 0.31 6.7E-06 48.4 7.4 94 64-167 193-292 (385)
236 PRK00258 aroE shikimate 5-dehy 93.0 0.14 3.1E-06 48.1 4.7 91 64-158 124-220 (278)
237 TIGR01763 MalateDH_bact malate 92.9 0.16 3.4E-06 48.7 5.0 74 64-138 2-78 (305)
238 PRK12429 3-hydroxybutyrate deh 92.9 0.08 1.7E-06 47.4 2.9 32 64-96 5-36 (258)
239 PRK08618 ornithine cyclodeamin 92.9 0.15 3.4E-06 49.0 5.0 97 63-162 127-224 (325)
240 PRK06182 short chain dehydroge 92.9 0.093 2E-06 48.0 3.3 32 63-95 3-34 (273)
241 PRK06141 ornithine cyclodeamin 92.9 0.12 2.5E-06 49.7 4.1 96 62-164 124-223 (314)
242 PRK13940 glutamyl-tRNA reducta 92.9 0.11 2.4E-06 52.0 4.1 91 64-160 182-274 (414)
243 PRK06249 2-dehydropantoate 2-r 92.8 0.75 1.6E-05 43.7 9.5 94 63-160 5-107 (313)
244 PRK13243 glyoxylate reductase; 92.8 0.3 6.5E-06 47.3 6.9 92 63-166 150-247 (333)
245 PRK07806 short chain dehydroge 92.7 0.37 8E-06 43.0 6.9 31 64-95 7-37 (248)
246 PTZ00431 pyrroline carboxylate 92.6 0.32 7E-06 45.2 6.6 92 64-174 4-102 (260)
247 KOG2711 Glycerol-3-phosphate d 92.6 0.48 1E-05 46.5 7.7 107 59-166 17-146 (372)
248 cd01483 E1_enzyme_family Super 92.6 0.3 6.5E-06 40.9 5.7 94 65-161 1-123 (143)
249 PRK12825 fabG 3-ketoacyl-(acyl 92.6 0.21 4.6E-06 44.0 5.0 33 62-95 5-37 (249)
250 TIGR01772 MDH_euk_gproteo mala 92.5 0.29 6.2E-06 47.3 6.2 71 65-139 1-77 (312)
251 PLN02545 3-hydroxybutyryl-CoA 92.5 0.15 3.3E-06 47.9 4.3 103 62-166 3-126 (295)
252 PRK06953 short chain dehydroge 92.3 0.19 4.2E-06 44.4 4.5 32 63-95 1-32 (222)
253 PTZ00345 glycerol-3-phosphate 92.3 0.74 1.6E-05 45.4 9.0 102 63-165 11-135 (365)
254 PLN02260 probable rhamnose bio 92.3 0.17 3.6E-06 53.1 4.7 33 63-95 6-39 (668)
255 PRK05693 short chain dehydroge 92.3 0.15 3.2E-06 46.7 3.8 32 63-95 1-32 (274)
256 PRK07774 short chain dehydroge 92.3 0.14 2.9E-06 45.8 3.5 31 64-95 7-37 (250)
257 cd05191 NAD_bind_amino_acid_DH 92.2 1.3 2.7E-05 34.1 8.4 63 62-159 22-86 (86)
258 cd05212 NAD_bind_m-THF_DH_Cycl 92.2 0.39 8.5E-06 41.1 6.0 74 63-162 28-103 (140)
259 PRK09291 short chain dehydroge 92.2 0.12 2.6E-06 46.3 3.0 32 63-95 2-33 (257)
260 TIGR00873 gnd 6-phosphoglucona 92.2 0.31 6.7E-06 49.6 6.3 169 65-249 1-179 (467)
261 COG0240 GpsA Glycerol-3-phosph 92.2 0.29 6.2E-06 47.7 5.7 102 63-166 1-112 (329)
262 PRK06180 short chain dehydroge 92.1 0.16 3.4E-06 46.8 3.8 32 63-95 4-35 (277)
263 PRK06392 homoserine dehydrogen 92.0 0.47 1E-05 46.1 7.1 95 64-159 1-116 (326)
264 PTZ00117 malate dehydrogenase; 91.9 0.37 7.9E-06 46.4 6.2 74 63-138 5-82 (319)
265 PF02719 Polysacc_synt_2: Poly 91.9 0.14 3.1E-06 49.1 3.3 30 66-95 1-30 (293)
266 PRK14806 bifunctional cyclohex 91.9 0.48 1E-05 50.3 7.6 91 64-161 4-99 (735)
267 TIGR01746 Thioester-redct thio 91.9 0.22 4.7E-06 46.6 4.5 31 65-95 1-32 (367)
268 PLN02928 oxidoreductase family 91.8 0.57 1.2E-05 45.7 7.5 97 64-166 160-269 (347)
269 PRK07454 short chain dehydroge 91.8 0.23 5E-06 44.2 4.4 33 62-95 5-37 (241)
270 cd01492 Aos1_SUMO Ubiquitin ac 91.8 0.35 7.7E-06 43.4 5.6 96 62-158 20-141 (197)
271 TIGR01179 galE UDP-glucose-4-e 91.8 0.2 4.4E-06 46.1 4.2 29 65-94 1-29 (328)
272 TIGR01758 MDH_euk_cyt malate d 91.7 0.35 7.6E-06 46.8 5.7 32 65-96 1-38 (324)
273 cd01484 E1-2_like Ubiquitin ac 91.6 0.42 9.2E-06 44.3 6.0 93 65-158 1-122 (234)
274 PRK06718 precorrin-2 dehydroge 91.5 0.54 1.2E-05 42.4 6.5 84 64-153 11-95 (202)
275 PLN03139 formate dehydrogenase 91.5 0.58 1.3E-05 46.6 7.2 93 64-166 200-298 (386)
276 cd05291 HicDH_like L-2-hydroxy 91.5 0.3 6.6E-06 46.5 5.0 72 65-139 2-78 (306)
277 PF02254 TrkA_N: TrkA-N domain 91.4 0.3 6.5E-06 39.0 4.2 88 66-156 1-93 (116)
278 PRK06129 3-hydroxyacyl-CoA deh 91.4 0.56 1.2E-05 44.5 6.8 31 63-95 2-32 (308)
279 PRK07578 short chain dehydroge 91.4 0.42 9.1E-06 41.5 5.5 30 64-95 1-30 (199)
280 PRK05786 fabG 3-ketoacyl-(acyl 91.3 0.4 8.6E-06 42.5 5.3 32 64-96 6-37 (238)
281 KOG1430 C-3 sterol dehydrogena 91.3 0.53 1.1E-05 46.5 6.5 35 61-95 2-37 (361)
282 PF02882 THF_DHG_CYH_C: Tetrah 91.2 0.34 7.4E-06 42.5 4.6 77 62-163 35-112 (160)
283 PRK07023 short chain dehydroge 91.2 0.33 7.1E-06 43.4 4.7 32 63-95 1-32 (243)
284 PLN02260 probable rhamnose bio 91.1 0.32 7E-06 50.9 5.3 27 60-86 377-403 (668)
285 TIGR00561 pntA NAD(P) transhyd 91.1 0.5 1.1E-05 48.7 6.4 96 63-161 164-286 (511)
286 PRK08291 ectoine utilization p 91.0 0.3 6.5E-06 47.1 4.5 96 63-162 132-230 (330)
287 PRK05653 fabG 3-ketoacyl-(acyl 91.0 0.39 8.4E-06 42.3 4.9 31 64-95 6-36 (246)
288 PLN02653 GDP-mannose 4,6-dehyd 91.0 0.31 6.6E-06 46.2 4.5 32 63-95 6-37 (340)
289 PRK07530 3-hydroxybutyryl-CoA 90.9 0.65 1.4E-05 43.6 6.6 102 62-165 3-125 (292)
290 PRK00066 ldh L-lactate dehydro 90.9 0.47 1E-05 45.7 5.7 72 64-139 7-83 (315)
291 PLN02240 UDP-glucose 4-epimera 90.8 0.36 7.8E-06 45.6 4.9 32 63-95 5-36 (352)
292 cd01485 E1-1_like Ubiquitin ac 90.8 0.51 1.1E-05 42.4 5.5 96 63-159 19-145 (198)
293 PRK12921 2-dehydropantoate 2-r 90.8 0.72 1.6E-05 43.0 6.8 95 64-161 1-104 (305)
294 PRK06138 short chain dehydroge 90.8 0.16 3.6E-06 45.2 2.3 31 64-95 6-36 (252)
295 PRK14179 bifunctional 5,10-met 90.7 0.4 8.7E-06 45.8 5.0 75 64-163 159-234 (284)
296 PRK07531 bifunctional 3-hydrox 90.7 0.68 1.5E-05 47.2 7.0 99 62-163 3-120 (495)
297 TIGR01757 Malate-DH_plant mala 90.6 0.34 7.4E-06 48.2 4.6 27 63-89 44-70 (387)
298 cd00757 ThiF_MoeB_HesA_family 90.6 0.57 1.2E-05 42.7 5.8 94 63-159 21-143 (228)
299 PRK05678 succinyl-CoA syntheta 90.6 1.1 2.4E-05 42.9 7.9 96 61-165 6-103 (291)
300 cd05293 LDH_1 A subgroup of L- 90.5 0.46 9.9E-06 45.8 5.3 72 64-139 4-81 (312)
301 COG0460 ThrA Homoserine dehydr 90.4 0.71 1.5E-05 45.1 6.5 93 62-157 2-111 (333)
302 PLN02725 GDP-4-keto-6-deoxyman 90.4 0.24 5.1E-06 45.7 3.1 21 67-87 1-21 (306)
303 TIGR00465 ilvC ketol-acid redu 90.3 0.65 1.4E-05 44.8 6.1 166 64-250 4-194 (314)
304 PRK15438 erythronate-4-phospha 90.3 1.1 2.3E-05 44.6 7.7 83 63-160 116-208 (378)
305 PF03721 UDPG_MGDP_dh_N: UDP-g 90.1 0.17 3.7E-06 45.0 1.8 30 64-95 1-30 (185)
306 PRK00257 erythronate-4-phospha 90.0 1 2.2E-05 44.8 7.4 88 63-165 116-213 (381)
307 PRK06932 glycerate dehydrogena 90.0 0.89 1.9E-05 43.7 6.8 87 64-166 148-240 (314)
308 PRK08374 homoserine dehydrogen 90.0 0.65 1.4E-05 45.1 5.9 96 63-159 2-122 (336)
309 PRK15409 bifunctional glyoxyla 90.0 0.83 1.8E-05 44.2 6.6 90 64-165 146-242 (323)
310 PRK06813 homoserine dehydrogen 89.8 0.9 1.9E-05 44.6 6.7 94 63-157 2-120 (346)
311 cd05290 LDH_3 A subgroup of L- 89.8 0.49 1.1E-05 45.5 4.8 73 65-139 1-78 (307)
312 PF02423 OCD_Mu_crystall: Orni 89.8 0.2 4.3E-06 48.1 2.2 95 62-160 127-225 (313)
313 cd01489 Uba2_SUMO Ubiquitin ac 89.8 0.67 1.4E-05 44.9 5.7 93 65-158 1-121 (312)
314 PRK08410 2-hydroxyacid dehydro 89.7 1.4 2.9E-05 42.4 7.8 89 63-166 145-239 (311)
315 PRK07890 short chain dehydroge 89.7 0.27 5.8E-06 44.1 2.8 31 64-95 6-36 (258)
316 COG0373 HemA Glutamyl-tRNA red 89.6 0.63 1.4E-05 46.8 5.5 93 62-160 177-275 (414)
317 PRK06487 glycerate dehydrogena 89.5 1.2 2.7E-05 42.8 7.4 86 64-166 149-240 (317)
318 PRK09496 trkA potassium transp 89.5 0.5 1.1E-05 46.7 4.8 77 64-143 1-79 (453)
319 cd00650 LDH_MDH_like NAD-depen 89.5 0.51 1.1E-05 43.8 4.6 31 66-96 1-34 (263)
320 PRK06057 short chain dehydroge 89.5 0.32 6.9E-06 43.9 3.2 32 63-95 7-38 (255)
321 PRK14192 bifunctional 5,10-met 89.5 1 2.2E-05 43.0 6.6 73 64-161 160-233 (283)
322 PLN02858 fructose-bisphosphate 89.5 0.64 1.4E-05 53.2 6.2 90 62-161 323-420 (1378)
323 PRK06153 hypothetical protein; 89.5 0.57 1.2E-05 46.7 5.1 98 63-165 176-304 (393)
324 PRK07060 short chain dehydroge 89.4 0.38 8.3E-06 42.7 3.6 31 64-95 10-40 (245)
325 PRK07231 fabG 3-ketoacyl-(acyl 89.4 0.58 1.3E-05 41.6 4.7 31 64-95 6-36 (251)
326 PRK07340 ornithine cyclodeamin 89.4 0.46 1E-05 45.4 4.3 93 62-161 124-219 (304)
327 PRK05690 molybdopterin biosynt 89.2 0.82 1.8E-05 42.4 5.7 94 62-158 31-153 (245)
328 PRK05479 ketol-acid reductoiso 89.2 1.2 2.6E-05 43.5 7.1 92 63-165 17-113 (330)
329 PRK06196 oxidoreductase; Provi 89.2 0.5 1.1E-05 44.5 4.4 31 64-95 27-57 (315)
330 TIGR03376 glycerol3P_DH glycer 89.2 0.96 2.1E-05 44.2 6.4 100 65-165 1-122 (342)
331 TIGR00715 precor6x_red precorr 89.1 0.83 1.8E-05 42.9 5.7 91 64-158 1-98 (256)
332 TIGR02356 adenyl_thiF thiazole 89.0 0.38 8.3E-06 43.2 3.3 95 62-159 20-143 (202)
333 PF00899 ThiF: ThiF family; I 88.9 0.32 6.9E-06 40.4 2.5 94 63-159 2-124 (135)
334 PRK12828 short chain dehydroge 88.8 0.66 1.4E-05 40.7 4.6 31 64-95 8-38 (239)
335 TIGR01327 PGDH D-3-phosphoglyc 88.8 1.1 2.4E-05 46.1 6.9 90 64-164 139-234 (525)
336 PRK06407 ornithine cyclodeamin 88.7 0.54 1.2E-05 45.0 4.3 98 62-164 116-216 (301)
337 COG3268 Uncharacterized conser 88.7 0.37 8E-06 47.3 3.1 93 62-161 5-106 (382)
338 COG1893 ApbA Ketopantoate redu 88.6 1.6 3.6E-05 41.8 7.5 88 64-156 1-98 (307)
339 PLN02602 lactate dehydrogenase 88.5 0.89 1.9E-05 44.6 5.7 72 64-139 38-115 (350)
340 TIGR01692 HIBADH 3-hydroxyisob 88.4 0.55 1.2E-05 44.1 4.1 84 69-162 2-93 (288)
341 PRK14189 bifunctional 5,10-met 88.4 0.99 2.2E-05 43.2 5.8 74 63-162 158-233 (285)
342 PTZ00082 L-lactate dehydrogena 88.4 1 2.2E-05 43.5 6.0 75 62-138 5-83 (321)
343 PRK13581 D-3-phosphoglycerate 88.4 1 2.2E-05 46.4 6.3 91 63-165 140-236 (526)
344 PRK07856 short chain dehydroge 88.4 0.68 1.5E-05 41.7 4.5 31 64-95 7-37 (252)
345 PRK10538 malonic semialdehyde 88.4 0.77 1.7E-05 41.3 4.8 31 64-95 1-31 (248)
346 PRK06823 ornithine cyclodeamin 88.2 0.81 1.8E-05 44.1 5.2 96 62-162 127-225 (315)
347 TIGR01019 sucCoAalpha succinyl 88.2 2.1 4.6E-05 40.9 7.9 93 62-163 5-99 (286)
348 PF07993 NAD_binding_4: Male s 88.1 0.51 1.1E-05 43.1 3.5 29 68-96 1-30 (249)
349 PRK07825 short chain dehydroge 88.0 0.59 1.3E-05 42.6 3.9 31 64-95 6-36 (273)
350 PRK08263 short chain dehydroge 88.0 0.7 1.5E-05 42.3 4.4 31 64-95 4-34 (275)
351 COG2084 MmsB 3-hydroxyisobutyr 88.0 1 2.2E-05 43.1 5.6 88 64-162 1-98 (286)
352 PRK12746 short chain dehydroge 88.0 0.89 1.9E-05 40.7 5.0 33 64-97 7-39 (254)
353 PRK06181 short chain dehydroge 88.0 0.67 1.5E-05 41.8 4.2 31 64-95 2-32 (263)
354 PRK06035 3-hydroxyacyl-CoA deh 88.0 0.99 2.1E-05 42.4 5.5 102 63-166 3-128 (291)
355 PRK06947 glucose-1-dehydrogena 87.9 0.86 1.9E-05 40.6 4.8 32 63-95 2-33 (248)
356 PLN00112 malate dehydrogenase 87.7 0.85 1.8E-05 46.2 5.1 75 62-139 99-186 (444)
357 COG1090 Predicted nucleoside-d 87.7 0.98 2.1E-05 43.3 5.2 30 66-96 1-30 (297)
358 PLN02996 fatty acyl-CoA reduct 87.6 0.89 1.9E-05 46.3 5.2 32 64-95 12-45 (491)
359 PRK06719 precorrin-2 dehydroge 87.5 2.6 5.5E-05 36.5 7.4 76 64-148 14-89 (157)
360 PRK09135 pteridine reductase; 87.4 1.1 2.3E-05 39.7 5.1 31 64-95 7-37 (249)
361 PRK08063 enoyl-(acyl carrier p 87.2 1.1 2.3E-05 40.0 5.0 30 64-94 5-34 (250)
362 PRK12367 short chain dehydroge 87.2 1.2 2.6E-05 40.8 5.4 31 64-95 15-45 (245)
363 PRK06924 short chain dehydroge 87.1 1.1 2.3E-05 40.1 4.9 32 63-95 1-32 (251)
364 PRK14174 bifunctional 5,10-met 87.1 0.96 2.1E-05 43.5 4.9 75 64-163 160-239 (295)
365 PRK08177 short chain dehydroge 87.1 1.1 2.4E-05 39.7 4.9 32 63-95 1-32 (225)
366 PLN02503 fatty acyl-CoA reduct 87.1 0.81 1.7E-05 48.1 4.7 32 64-95 120-153 (605)
367 PRK06398 aldose dehydrogenase; 87.0 0.97 2.1E-05 41.1 4.7 31 64-95 7-37 (258)
368 KOG1221 Acyl-CoA reductase [Li 87.0 0.92 2E-05 46.3 4.9 42 64-105 13-55 (467)
369 PRK08017 oxidoreductase; Provi 86.8 1.2 2.6E-05 39.9 5.0 31 64-95 3-33 (256)
370 PRK07102 short chain dehydroge 86.8 1 2.2E-05 40.2 4.6 32 63-95 1-32 (243)
371 PRK13394 3-hydroxybutyrate deh 86.8 1.1 2.4E-05 40.1 4.9 32 63-95 7-38 (262)
372 PRK14620 NAD(P)H-dependent gly 86.7 1 2.2E-05 42.9 4.8 96 64-162 1-109 (326)
373 PRK07424 bifunctional sterol d 86.7 0.78 1.7E-05 45.9 4.2 33 63-96 178-210 (406)
374 PF01262 AlaDh_PNT_C: Alanine 86.7 0.61 1.3E-05 40.4 3.0 97 64-163 21-143 (168)
375 COG0743 Dxr 1-deoxy-D-xylulose 86.6 0.95 2.1E-05 44.8 4.5 38 63-100 1-39 (385)
376 PRK14193 bifunctional 5,10-met 86.0 1.3 2.7E-05 42.5 5.0 74 64-162 159-235 (284)
377 COG1004 Ugd Predicted UDP-gluc 86.0 0.89 1.9E-05 45.5 4.0 29 64-94 1-29 (414)
378 TIGR02717 AcCoA-syn-alpha acet 85.8 2.9 6.2E-05 42.2 7.7 88 64-164 8-101 (447)
379 PRK12475 thiamine/molybdopteri 85.7 0.83 1.8E-05 44.5 3.7 95 61-158 22-147 (338)
380 PLN02858 fructose-bisphosphate 85.6 1.4 3.1E-05 50.5 6.0 89 63-161 4-100 (1378)
381 PRK07589 ornithine cyclodeamin 85.5 1 2.2E-05 44.2 4.2 98 62-164 128-229 (346)
382 PRK06200 2,3-dihydroxy-2,3-dih 85.5 0.98 2.1E-05 40.9 3.9 31 64-95 7-37 (263)
383 PRK09730 putative NAD(P)-bindi 85.5 1.4 3E-05 39.0 4.8 31 63-94 1-31 (247)
384 PF13241 NAD_binding_7: Putati 85.5 2.6 5.7E-05 33.6 5.9 80 63-155 7-88 (103)
385 PRK09496 trkA potassium transp 85.3 1.4 3E-05 43.6 5.1 80 61-142 229-310 (453)
386 PRK06463 fabG 3-ketoacyl-(acyl 85.3 0.94 2E-05 40.8 3.6 31 64-95 8-38 (255)
387 PLN02306 hydroxypyruvate reduc 85.2 3.3 7.1E-05 41.2 7.7 94 64-160 166-273 (386)
388 PRK07024 short chain dehydroge 85.1 1.6 3.4E-05 39.5 5.1 32 63-95 2-33 (257)
389 PRK12745 3-ketoacyl-(acyl-carr 85.1 1.6 3.4E-05 39.1 4.9 31 64-95 3-33 (256)
390 PRK11790 D-3-phosphoglycerate 85.0 3.3 7.2E-05 41.4 7.6 85 64-162 152-242 (409)
391 KOG1494 NAD-dependent malate d 84.6 1.4 3E-05 42.5 4.5 35 61-95 26-60 (345)
392 PRK06914 short chain dehydroge 84.6 1.8 3.8E-05 39.5 5.1 31 64-95 4-34 (280)
393 cd08293 PTGR2 Prostaglandin re 84.6 2.1 4.5E-05 40.3 5.7 95 64-159 156-254 (345)
394 cd05188 MDR Medium chain reduc 84.5 2.3 5.1E-05 37.6 5.8 97 63-161 135-234 (271)
395 PRK12827 short chain dehydroge 84.0 1.2 2.5E-05 39.5 3.6 32 63-95 6-37 (249)
396 PRK10792 bifunctional 5,10-met 84.0 3.5 7.5E-05 39.5 7.0 74 63-162 159-234 (285)
397 PRK14184 bifunctional 5,10-met 83.9 2.6 5.6E-05 40.4 6.1 76 64-163 158-237 (286)
398 COG1087 GalE UDP-glucose 4-epi 83.8 1.6 3.4E-05 42.5 4.5 30 64-94 1-30 (329)
399 PRK09134 short chain dehydroge 83.8 2.3 4.9E-05 38.4 5.5 33 63-96 9-41 (258)
400 COG1086 Predicted nucleoside-d 83.7 1.1 2.5E-05 46.6 3.8 32 64-95 251-282 (588)
401 COG3320 Putative dehydrogenase 83.6 1.6 3.5E-05 43.4 4.6 36 64-99 1-36 (382)
402 PRK08251 short chain dehydroge 83.5 2.1 4.5E-05 38.2 5.1 31 64-95 3-33 (248)
403 cd08259 Zn_ADH5 Alcohol dehydr 83.4 2.3 5.1E-05 39.2 5.5 92 64-160 164-257 (332)
404 PRK07814 short chain dehydroge 83.3 2.1 4.5E-05 38.9 5.0 33 63-96 10-42 (263)
405 PRK07904 short chain dehydroge 83.2 2.3 5.1E-05 38.7 5.3 33 63-95 8-40 (253)
406 PRK07074 short chain dehydroge 83.0 2 4.3E-05 38.6 4.7 31 64-95 3-33 (257)
407 cd01487 E1_ThiF_like E1_ThiF_l 82.9 3.4 7.4E-05 36.2 6.0 93 65-160 1-122 (174)
408 PRK09186 flagellin modificatio 82.8 2.3 5E-05 38.0 5.0 32 63-95 4-35 (256)
409 PRK14178 bifunctional 5,10-met 82.7 2 4.3E-05 41.1 4.7 73 64-162 153-227 (279)
410 TIGR03206 benzo_BadH 2-hydroxy 82.6 2.1 4.6E-05 38.0 4.7 32 63-95 3-34 (250)
411 PRK06482 short chain dehydroge 82.6 2.3 5E-05 38.7 5.0 31 64-95 3-33 (276)
412 cd05311 NAD_bind_2_malic_enz N 82.3 3.9 8.5E-05 37.4 6.5 93 64-159 26-128 (226)
413 PRK12742 oxidoreductase; Provi 82.3 2.5 5.5E-05 37.3 5.1 30 64-94 7-36 (237)
414 cd01339 LDH-like_MDH L-lactate 82.3 1.6 3.4E-05 41.4 3.9 72 66-138 1-75 (300)
415 COG0111 SerA Phosphoglycerate 82.3 4.8 0.00011 39.1 7.4 87 63-160 142-234 (324)
416 PRK06101 short chain dehydroge 82.2 2.4 5.2E-05 37.9 4.9 32 63-95 1-32 (240)
417 KOG2733 Uncharacterized membra 82.1 0.65 1.4E-05 46.0 1.3 32 63-94 5-39 (423)
418 PRK14173 bifunctional 5,10-met 82.0 2.4 5.2E-05 40.7 5.1 73 64-162 156-230 (287)
419 PRK07063 short chain dehydroge 81.9 1.3 2.8E-05 39.9 3.1 31 64-95 8-38 (260)
420 PRK06949 short chain dehydroge 81.8 2.4 5.2E-05 37.9 4.8 31 64-95 10-40 (258)
421 PRK05717 oxidoreductase; Valid 81.8 2.6 5.7E-05 37.9 5.1 32 63-95 10-41 (255)
422 PRK12549 shikimate 5-dehydroge 81.6 1.5 3.3E-05 41.5 3.6 76 64-141 128-204 (284)
423 PRK14191 bifunctional 5,10-met 81.6 2.2 4.7E-05 40.9 4.6 74 64-162 158-232 (285)
424 KOG1431 GDP-L-fucose synthetas 81.6 2.3 5E-05 40.0 4.6 34 63-96 1-36 (315)
425 PRK08642 fabG 3-ketoacyl-(acyl 81.4 2.5 5.4E-05 37.6 4.7 31 64-95 6-36 (253)
426 PRK12548 shikimate 5-dehydroge 81.4 2.3 5E-05 40.3 4.7 31 64-95 127-157 (289)
427 TIGR01832 kduD 2-deoxy-D-gluco 81.4 2.5 5.4E-05 37.7 4.7 32 63-95 5-36 (248)
428 PRK08277 D-mannonate oxidoredu 81.3 1.9 4.2E-05 39.3 4.1 31 64-95 11-41 (278)
429 cd01486 Apg7 Apg7 is an E1-lik 81.3 1.6 3.4E-05 42.3 3.5 37 127-165 106-144 (307)
430 smart00822 PKS_KR This enzymat 81.3 2.9 6.3E-05 34.1 4.8 30 65-94 2-31 (180)
431 PRK08643 acetoin reductase; Va 81.2 2.6 5.7E-05 37.8 4.8 31 64-95 3-33 (256)
432 cd08250 Mgc45594_like Mgc45594 81.2 3.1 6.7E-05 38.7 5.4 96 64-161 141-239 (329)
433 cd01076 NAD_bind_1_Glu_DH NAD( 81.0 5.6 0.00012 36.6 6.9 32 62-95 30-61 (227)
434 PRK07666 fabG 3-ketoacyl-(acyl 80.9 3.2 6.8E-05 36.8 5.2 31 64-95 8-38 (239)
435 PRK08328 hypothetical protein; 80.9 3.6 7.8E-05 37.7 5.7 93 63-158 27-149 (231)
436 PRK07775 short chain dehydroge 80.9 2.9 6.2E-05 38.4 5.1 32 63-95 10-41 (274)
437 PRK07688 thiamine/molybdopteri 80.7 1.8 3.8E-05 42.2 3.8 98 59-159 20-148 (339)
438 PRK12939 short chain dehydroge 80.7 3.1 6.8E-05 36.8 5.1 31 64-95 8-38 (250)
439 PRK08265 short chain dehydroge 80.7 2.2 4.7E-05 38.8 4.1 31 64-95 7-37 (261)
440 PRK06194 hypothetical protein; 80.6 2.9 6.4E-05 38.2 5.0 31 64-95 7-37 (287)
441 PRK12743 oxidoreductase; Provi 80.5 2.9 6.4E-05 37.7 4.9 32 63-95 2-33 (256)
442 PRK14176 bifunctional 5,10-met 80.4 3 6.6E-05 40.0 5.1 74 64-162 165-239 (287)
443 cd05295 MDH_like Malate dehydr 80.4 3 6.4E-05 42.5 5.3 78 59-139 119-209 (452)
444 PRK09072 short chain dehydroge 80.1 3.2 6.8E-05 37.6 5.0 31 64-95 6-36 (263)
445 PRK07577 short chain dehydroge 80.0 3.4 7.3E-05 36.4 5.1 31 64-95 4-34 (234)
446 PF00106 adh_short: short chai 80.0 3.6 7.8E-05 34.2 5.0 33 65-98 2-34 (167)
447 TIGR02355 moeB molybdopterin s 79.9 2.4 5.2E-05 39.2 4.2 95 62-159 23-146 (240)
448 PRK12384 sorbitol-6-phosphate 79.9 3.1 6.7E-05 37.4 4.9 31 64-95 3-33 (259)
449 PRK14186 bifunctional 5,10-met 79.8 3 6.5E-05 40.2 4.9 73 64-162 159-233 (297)
450 PRK08762 molybdopterin biosynt 79.7 3.8 8.1E-05 40.3 5.7 94 62-158 134-256 (376)
451 KOG2741 Dimeric dihydrodiol de 79.7 5 0.00011 39.5 6.4 83 61-147 4-90 (351)
452 PRK15116 sulfur acceptor prote 79.6 6.4 0.00014 37.3 7.0 100 63-165 30-160 (268)
453 PRK06701 short chain dehydroge 79.5 4.7 0.0001 37.6 6.1 32 63-95 46-77 (290)
454 PRK06077 fabG 3-ketoacyl-(acyl 79.5 3.4 7.3E-05 36.7 4.9 32 63-95 6-37 (252)
455 COG2423 Predicted ornithine cy 79.5 2.9 6.3E-05 40.8 4.8 100 62-165 129-231 (330)
456 PRK14185 bifunctional 5,10-met 79.5 3.1 6.7E-05 40.0 4.9 74 64-162 158-236 (293)
457 PRK14168 bifunctional 5,10-met 79.4 3.1 6.8E-05 40.1 4.9 75 64-162 162-240 (297)
458 PRK06199 ornithine cyclodeamin 79.3 2.6 5.6E-05 41.8 4.4 91 62-156 154-256 (379)
459 PRK05875 short chain dehydroge 79.2 3.1 6.7E-05 37.8 4.7 32 63-95 7-38 (276)
460 PRK06124 gluconate 5-dehydroge 79.2 3.4 7.3E-05 37.1 4.8 33 63-96 11-43 (256)
461 PRK14190 bifunctional 5,10-met 79.1 3.2 6.8E-05 39.8 4.8 74 63-162 158-233 (284)
462 PRK07523 gluconate 5-dehydroge 78.9 3.5 7.7E-05 37.0 4.9 31 64-95 11-41 (255)
463 PRK14167 bifunctional 5,10-met 78.9 3.7 8E-05 39.6 5.2 75 64-162 158-236 (297)
464 COG1088 RfbB dTDP-D-glucose 4, 78.9 3.2 6.9E-05 40.4 4.7 40 64-103 1-41 (340)
465 cd05211 NAD_bind_Glu_Leu_Phe_V 78.8 8.8 0.00019 35.1 7.5 32 62-95 22-53 (217)
466 PRK12936 3-ketoacyl-(acyl-carr 78.8 3.7 8.1E-05 36.2 4.9 30 64-94 7-36 (245)
467 TIGR01809 Shik-DH-AROM shikima 78.8 4.2 9E-05 38.4 5.5 77 64-142 126-203 (282)
468 PRK07066 3-hydroxybutyryl-CoA 78.7 12 0.00027 36.3 8.8 102 62-165 6-125 (321)
469 PRK08644 thiamine biosynthesis 78.7 4.6 0.0001 36.6 5.6 96 62-160 27-151 (212)
470 PRK12937 short chain dehydroge 78.6 3.7 8.1E-05 36.3 4.9 31 64-95 6-36 (245)
471 cd05288 PGDH Prostaglandin deh 78.6 3.8 8.2E-05 38.0 5.1 96 64-160 147-245 (329)
472 PRK08703 short chain dehydroge 78.5 3.8 8.3E-05 36.4 5.0 31 64-95 7-37 (239)
473 PF02844 GARS_N: Phosphoribosy 78.5 2.2 4.7E-05 34.7 3.0 88 64-157 1-91 (100)
474 PRK14166 bifunctional 5,10-met 78.3 3.3 7.2E-05 39.6 4.7 73 64-162 158-232 (282)
475 cd08292 ETR_like_2 2-enoyl thi 78.3 4.5 9.8E-05 37.3 5.5 96 64-160 141-239 (324)
476 cd01075 NAD_bind_Leu_Phe_Val_D 78.3 5.8 0.00012 35.6 6.0 87 63-160 28-116 (200)
477 PRK14169 bifunctional 5,10-met 78.2 3.5 7.5E-05 39.5 4.8 73 64-162 157-231 (282)
478 PF02558 ApbA: Ketopantoate re 78.2 2.8 6.1E-05 34.9 3.8 104 66-174 1-114 (151)
479 TIGR02823 oxido_YhdH putative 78.1 5.2 0.00011 37.0 5.9 93 65-161 148-243 (323)
480 PRK08226 short chain dehydroge 78.0 4 8.7E-05 36.7 5.0 31 64-95 7-37 (263)
481 cd00300 LDH_like L-lactate deh 77.9 2.7 5.9E-05 40.0 4.0 70 66-139 1-76 (300)
482 PRK14180 bifunctional 5,10-met 77.9 4.1 8.8E-05 39.0 5.1 73 64-162 159-233 (282)
483 PRK06500 short chain dehydroge 77.9 3.8 8.3E-05 36.3 4.8 30 64-94 7-36 (249)
484 PRK12464 1-deoxy-D-xylulose 5- 77.8 2.1 4.6E-05 42.6 3.3 35 68-102 1-36 (383)
485 PRK08213 gluconate 5-dehydroge 77.8 4.1 8.9E-05 36.6 5.0 31 64-95 13-43 (259)
486 PRK07067 sorbitol dehydrogenas 77.6 3.6 7.8E-05 37.0 4.5 31 64-95 7-37 (257)
487 PLN02700 homoserine dehydrogen 77.6 5.1 0.00011 39.9 5.9 23 62-85 2-24 (377)
488 PRK07877 hypothetical protein; 77.3 4.1 8.8E-05 43.9 5.5 97 62-162 106-231 (722)
489 PRK06171 sorbitol-6-phosphate 77.0 4.7 0.0001 36.4 5.2 31 64-95 10-40 (266)
490 TIGR01470 cysG_Nterm siroheme 76.8 5.2 0.00011 36.1 5.3 85 64-155 10-97 (205)
491 COG0604 Qor NADPH:quinone redu 76.8 4.5 9.7E-05 39.0 5.2 92 63-157 143-239 (326)
492 PRK14171 bifunctional 5,10-met 76.8 3.6 7.8E-05 39.5 4.5 73 64-162 160-234 (288)
493 PRK06523 short chain dehydroge 76.7 4.8 0.0001 36.2 5.1 31 64-95 10-40 (260)
494 cd08294 leukotriene_B4_DH_like 76.7 4.9 0.00011 37.2 5.3 95 64-159 145-241 (329)
495 cd01488 Uba3_RUB Ubiquitin act 76.7 4 8.6E-05 39.2 4.7 82 65-147 1-106 (291)
496 COG0300 DltE Short-chain dehyd 76.6 4.4 9.5E-05 38.4 4.9 38 60-98 3-40 (265)
497 PRK12824 acetoacetyl-CoA reduc 76.6 4.8 0.0001 35.5 5.0 31 64-95 3-33 (245)
498 PF00070 Pyr_redox: Pyridine n 76.6 7.5 0.00016 29.0 5.4 32 65-98 1-32 (80)
499 PRK14170 bifunctional 5,10-met 76.5 4.1 9E-05 39.0 4.8 73 64-162 158-232 (284)
500 KOG1198 Zinc-binding oxidoredu 76.4 5 0.00011 39.3 5.5 98 61-163 156-261 (347)
No 1
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-79 Score=579.30 Aligned_cols=243 Identities=47% Similarity=0.835 Sum_probs=226.0
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCccc-CCCccccccCccc--CCCCCEEEecCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS-QDLPTMVAVKDAD--FSNVDAVFCCLP 138 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~-~~~~~~~~~~~~~--~~~~DvVF~alp 138 (306)
+|+||+|+|||||+|.||+|+|.+||++|+...+|++.+|+++.+.||++++ .++ .++.++++. .+++|+||+|||
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l-~~~~~~~~~~~~~~~DvvFlalP 79 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDL-PFQTIDPEKIELDECDVVFLALP 79 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCccccccccc-ccccCChhhhhcccCCEEEEecC
Confidence 5799999999999999999999999999988888888899999999999985 333 244444333 256999999999
Q ss_pred ccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhh
Q 021865 139 HGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217 (306)
Q Consensus 139 ~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~L 217 (306)
|++|+++++.+ ++|++|||||+|||++|++.|++||+.+|..||++++++||||||+||+|+++++||||||||||++|
T Consensus 80 hg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~iL 159 (349)
T COG0002 80 HGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAIL 159 (349)
T ss_pred chhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchHHHHHH
Confidence 99999999988 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhccCCCCce-EEEEeeeecCccCccccccccHHHHhcCceeecCCCCCchhHHHHHhhcccCCcceEEEEeeee
Q 021865 218 PLVPLIQANLIQYRN-IIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLM 296 (306)
Q Consensus 218 aL~PL~~~~li~~~~-iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~~HrH~pEI~q~L~~~~~~~~~v~Ftphlv 296 (306)
+|+||++.|+++.+. ++||++||+|||||+++..+||+|+++|++||+++.|||+|||+|+|+++++....++||||++
T Consensus 160 al~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~~~~~~~Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~ 239 (349)
T COG0002 160 ALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLG 239 (349)
T ss_pred HHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchhhccccccccccccCchHHHHHHhhhcccCcCceEEecccc
Confidence 999999999998886 6999999999999999999999999999999999999999999999999988778899999999
Q ss_pred ccccccccc
Q 021865 297 PMVTVSLRC 305 (306)
Q Consensus 297 P~~RGil~~ 305 (306)
||.|||+..
T Consensus 240 p~~RGIl~T 248 (349)
T COG0002 240 PFVRGILAT 248 (349)
T ss_pred cccceEEEE
Confidence 999999863
No 2
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=7.9e-71 Score=537.11 Aligned_cols=249 Identities=80% Similarity=1.209 Sum_probs=230.4
Q ss_pred cccccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEec
Q 021865 57 TQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (306)
Q Consensus 57 ~~~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~a 136 (306)
.....+++||+|+|||||+|+||+|+|++||+++++.+++++++|+.+.+.+|++...+...+++++.++++++|+||+|
T Consensus 32 ~~~~~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~A 111 (381)
T PLN02968 32 SVKSEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCC 111 (381)
T ss_pred ccccccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEc
Confidence 33346778999999999999999999999999999999999999999999999987655544555555556789999999
Q ss_pred CCccchHHHHHhcCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHh
Q 021865 137 LPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQ 216 (306)
Q Consensus 137 lp~~~s~~~~~~l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~ 216 (306)
+|+++++++++++++|++|||||+|||+++++.|++||++||+.||+|++++|||||+||++|+++++|||||||+|+++
T Consensus 112 lp~~~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~ 191 (381)
T PLN02968 112 LPHGTTQEIIKALPKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQ 191 (381)
T ss_pred CCHHHHHHHHHHHhCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhcCCCEEECCCCHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeecCCCCCchhHHHHHhhcccCCcceEEEEeeee
Q 021865 217 LPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLM 296 (306)
Q Consensus 217 LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~~HrH~pEI~q~L~~~~~~~~~v~Ftphlv 296 (306)
|+|+||+++++++.++|+|+|+||+|||||++++++||.|+++|+++|+++.|||+|||||.+.++.+.+++|+||||++
T Consensus 192 laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~pEie~~~~~~~~~~~~v~ft~~~v 271 (381)
T PLN02968 192 LPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEIEQGLADAAGSKVTPSFTPHLM 271 (381)
T ss_pred HHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcchHHHHHHHHhCCCCCEEEEeEEe
Confidence 99999999998876789999999999999999999999999999999999999999999999987766678899999999
Q ss_pred ccccccccc
Q 021865 297 PMVTVSLRC 305 (306)
Q Consensus 297 P~~RGil~~ 305 (306)
||+|||+..
T Consensus 272 Pv~rG~~~t 280 (381)
T PLN02968 272 PMSRGMQST 280 (381)
T ss_pred eccccEEEE
Confidence 999999863
No 3
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=1.1e-67 Score=509.05 Aligned_cols=242 Identities=49% Similarity=0.849 Sum_probs=220.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE-eccccCCcccccccCCcccCCCccccccCcccC-CCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l-~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~-~~~DvVF~alp~~~ 141 (306)
+||+|+|||||+|++++|+|++||+++++.+ .|++++|+.+.+.||++.......++..+.+++ .++|+||+|+|+++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 5899999999999999999999999999965 778889999998899876421112333333334 47999999999999
Q ss_pred hHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhhhhh
Q 021865 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (306)
Q Consensus 142 s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~LaL~ 220 (306)
+.++++++ ++|++|||+|+|||+++++.|++||+.+|..||++++++||+||+||++|+++++|||||||+|+++|+|+
T Consensus 81 s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~~~iianPgC~~t~~~l~L~ 160 (346)
T TIGR01850 81 SAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKGARLIANPGCYPTATLLALA 160 (346)
T ss_pred HHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCCCcEEEcCCcHHHHHHHHHH
Confidence 99999887 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeecCCCCCchhHHHHHhhcccCCcceEEEEeeeecccc
Q 021865 221 PLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMVT 300 (306)
Q Consensus 221 PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~~HrH~pEI~q~L~~~~~~~~~v~FtphlvP~~R 300 (306)
||+++++++.++|+|+|+||+|||||+++++++++++++|++||+++.|||+|||+|+|+++.+.+++|+||||++||+|
T Consensus 161 PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~h~h~~Ei~~~l~~~~~~~~~v~ft~~~vPv~r 240 (346)
T TIGR01850 161 PLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTGHRHTPEIEQELGRLAGGKVKVSFTPHLVPMTR 240 (346)
T ss_pred HHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCCcCcHHHHHHHHHHhcCCCCCEEEEeEEeeccc
Confidence 99999988777899999999999999999999999999999999999999999999999998777788999999999999
Q ss_pred ccccc
Q 021865 301 VSLRC 305 (306)
Q Consensus 301 Gil~~ 305 (306)
||+.+
T Consensus 241 G~~~t 245 (346)
T TIGR01850 241 GILAT 245 (346)
T ss_pred cEEEE
Confidence 99865
No 4
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=4.4e-62 Score=469.56 Aligned_cols=241 Identities=51% Similarity=0.842 Sum_probs=217.5
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+|+||+|+||||++|++++++|.+||+++++.+.+++++|+.+.+.++++.......++++++..+.++|+||+|+|++.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV 80 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH
Confidence 46899999999999999999999999999999998888999998888876532111233343333467999999999999
Q ss_pred hHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhhhhh
Q 021865 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (306)
Q Consensus 142 s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~LaL~ 220 (306)
+.++++++ ++|++|||||+|||+++++.|++||+.+|..||++++++||+||+||++|+++++|||||||+|+++|+|+
T Consensus 81 ~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~~~iIanPgC~~t~~~l~L~ 160 (343)
T PRK00436 81 SMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKGARLIANPGCYPTASLLALA 160 (343)
T ss_pred HHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcCCCEEECCCCHHHHHHHHHH
Confidence 99999877 78999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeecCCCCCchhHHHHHhhcccCCcceEEEEeeeecccc
Q 021865 221 PLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMVT 300 (306)
Q Consensus 221 PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~~HrH~pEI~q~L~~~~~~~~~v~FtphlvP~~R 300 (306)
||++++++..++|+|+|+||+||||++++++++++++++|++||+++.|||+|||+++|+++.+ +|+||||++|+.|
T Consensus 161 PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~h~~Ei~~~l~~~~~---~v~~t~~~vPv~~ 237 (343)
T PRK00436 161 PLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHRHTPEIEQELSALAG---EVSFTPHLVPMTR 237 (343)
T ss_pred HHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCCCCHHHHHHHHHHhcC---CEEEEeEEecccC
Confidence 9999887765589999999999999999999999999999999999999999999999987754 6999999999999
Q ss_pred ccccc
Q 021865 301 VSLRC 305 (306)
Q Consensus 301 Gil~~ 305 (306)
||+..
T Consensus 238 G~~~t 242 (343)
T PRK00436 238 GILAT 242 (343)
T ss_pred cEEEE
Confidence 99863
No 5
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=2.2e-60 Score=451.06 Aligned_cols=200 Identities=27% Similarity=0.437 Sum_probs=179.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.||+|+|||||+|+||+|+|.+||++|+..+++++. +...+ . ++.++++|+||+|+||++++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----------~~~~~------~-~~~~~~~D~vFlalp~~~s~ 63 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----------KDAAE------R-AKLLNAADVAILCLPDDAAR 63 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----------cCcCC------H-hHhhcCCCEEEECCCHHHHH
Confidence 689999999999999999999999999999987654 10000 0 12235799999999999999
Q ss_pred HHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhccccc---chhcccCCcEEecCCChHHHHhhhh
Q 021865 144 EIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI---SREDIKNARLVANPGCYPTSIQLPL 219 (306)
Q Consensus 144 ~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl---~r~~i~~a~lVAnPGCy~Ta~~LaL 219 (306)
++++.+ ++|++|||||+|||+++ +++|||||+ +|++|+++++|||||||+|+++|+|
T Consensus 64 ~~~~~~~~~g~~VIDlSadfRl~~-------------------~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa~~LaL 124 (310)
T TIGR01851 64 EAVSLVDNPNTCIIDASTAYRTAD-------------------DWAYGFPELAPGQREKIRNSKRIANPGCYPTGFIALM 124 (310)
T ss_pred HHHHHHHhCCCEEEECChHHhCCC-------------------CCeEEccccCHHHHHhhccCCEEECCCCHHHHHHHHH
Confidence 999887 78999999999999986 458999999 8999999999999999999999999
Q ss_pred hHHHhccCCCCc-eEEEEeeeecCccCcccccccc----HHHHhcCceeecCC-CCCchhHHHHHhhcccCCcceEEEEe
Q 021865 220 VPLIQANLIQYR-NIIIDAKSGVSGAGRGAKEANL----YSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTP 293 (306)
Q Consensus 220 ~PL~~~~li~~~-~iiV~a~sgvSGAGr~~~~~~~----~~e~~~n~~~Y~~~-~HrH~pEI~q~L~~~~~~~~~v~Ftp 293 (306)
+||+++++++.. .++++++||+|||||+++++++ |+|+++|++||+++ +|||+|||+|+|+.. ++|+|||
T Consensus 125 ~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~e~~~~~~~Y~~~~~HrH~pEi~q~l~~~----~~v~FtP 200 (310)
T TIGR01851 125 RPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALTHKHLPEMRVHSGLA----LPPIFTP 200 (310)
T ss_pred HHHHHcCCccccceEEEEeccccCccChhhhHHhhhcccchhhccCceeccCCCCCCcHHHHHHHhCCC----CCEEEEe
Confidence 999999988643 5899999999999999999999 99999999999999 999999999999754 5799999
Q ss_pred eeecccccccc
Q 021865 294 HLMPMVTVSLR 304 (306)
Q Consensus 294 hlvP~~RGil~ 304 (306)
|++||.|||+.
T Consensus 201 hl~p~~RGil~ 211 (310)
T TIGR01851 201 AVGNFAQGMAV 211 (310)
T ss_pred EEccccCcEEE
Confidence 99999999986
No 6
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=4.8e-60 Score=450.22 Aligned_cols=203 Identities=28% Similarity=0.418 Sum_probs=181.4
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+|+||+|+|||||+|+||+|+|.+||++++..++++... .+ . .+++.++++|+||+|+||++
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~~---------------~-~~~~~~~~~DvvFlalp~~~ 62 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--DA---------------A-ARRELLNAADVAILCLPDDA 62 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--cc---------------c-CchhhhcCCCEEEECCCHHH
Confidence 478999999999999999999999999999999865432 11 0 01233467999999999999
Q ss_pred hHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhccccc---chhcccCCcEEecCCChHHHHhh
Q 021865 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI---SREDIKNARLVANPGCYPTSIQL 217 (306)
Q Consensus 142 s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl---~r~~i~~a~lVAnPGCy~Ta~~L 217 (306)
|+++++++ ++|++|||||+|||+++ +++|||||+ +|++|+++++|||||||+|+++|
T Consensus 63 s~~~~~~~~~~g~~VIDlSadfRl~~-------------------~~~yglPEvn~~~~~~i~~~~~IanPgC~~Ta~~l 123 (313)
T PRK11863 63 AREAVALIDNPATRVIDASTAHRTAP-------------------GWVYGFPELAPGQRERIAAAKRVANPGCYPTGAIA 123 (313)
T ss_pred HHHHHHHHHhCCCEEEECChhhhcCC-------------------CCeEEcCccCHHHHHHhhcCCeEEcCCcHHHHHHH
Confidence 99999987 78999999999999986 458999999 78999999999999999999999
Q ss_pred hhhHHHhccCCCCc-eEEEEeeeecCccCcccccccc--HHHHhcCceeecCC-CCCchhHHHHHhhcccCCcceEEEEe
Q 021865 218 PLVPLIQANLIQYR-NIIIDAKSGVSGAGRGAKEANL--YSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTP 293 (306)
Q Consensus 218 aL~PL~~~~li~~~-~iiV~a~sgvSGAGr~~~~~~~--~~e~~~n~~~Y~~~-~HrH~pEI~q~L~~~~~~~~~v~Ftp 293 (306)
+|+||++.++++.. .++++++||+|||||+++++++ |+|+++|++||+++ +|||+|||+|+|+.+ +.+.|||
T Consensus 124 aL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~----~~~~F~P 199 (313)
T PRK11863 124 LLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAAPDGKAPAFRLYGLGLAHKHLPEMQAHAGLA----RRPIFTP 199 (313)
T ss_pred HHHHHHHcCCcccCceEEEEEccccccCCccchHHHhhhhhhhccCeeeccCCcCCcchHHHHHHhccc----cCcEEEe
Confidence 99999999988543 6899999999999999999999 99999999999999 999999999999765 5689999
Q ss_pred eeeccccccccc
Q 021865 294 HLMPMVTVSLRC 305 (306)
Q Consensus 294 hlvP~~RGil~~ 305 (306)
|++||.|||+.+
T Consensus 200 hl~p~~rGil~T 211 (313)
T PRK11863 200 SVGNFRQGMLVT 211 (313)
T ss_pred eEccccCcEEEE
Confidence 999999999875
No 7
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-57 Score=437.27 Aligned_cols=215 Identities=19% Similarity=0.306 Sum_probs=190.8
Q ss_pred cCccEEEEEccccHHHHHHHHHHhc--CCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~--HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
.+.+||+|+|||||+|+||+|+|++ ||.+++..++|++++|+++. +.+.++ .++++++.+|.++|+||+|+|
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-----~~~~~~-~v~~~~~~~~~~~Dvvf~a~p 75 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-----FGGKSV-TVQDAAEFDWSQAQLAFFVAG 75 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-----ECCcce-EEEeCchhhccCCCEEEECCC
Confidence 4668999999999999999999998 99999999999999999997 233333 234444555678999999999
Q ss_pred ccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccch---hcccCCcEEecCCChHHH
Q 021865 139 HGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR---EDIKNARLVANPGCYPTS 214 (306)
Q Consensus 139 ~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r---~~i~~a~lVAnPGCy~Ta 214 (306)
|++|+++++.+ ++|++|||||+|||+++. + | ||+||+|| +.|+++++|||||||+|+
T Consensus 76 ~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~--------v----P-------~~lPEvn~~~l~~i~~~~iIAnPgC~~t~ 136 (336)
T PRK08040 76 REASAAYAEEATNAGCLVIDSSGLFALEPD--------V----P-------LVVPEVNPFVLADYRNRNIIAVADSLTSQ 136 (336)
T ss_pred HHHHHHHHHHHHHCCCEEEECChHhcCCCC--------C----c-------eEccccCHHHHhhhccCCEEECCCHHHHH
Confidence 99999999987 889999999999999972 2 2 99999999 777888999999999999
Q ss_pred HhhhhhHHHhccCCCCceEEEEeeeecCccCcccccc----------------ccHHH-HhcCceee------cCCCCCc
Q 021865 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA----------------NLYSE-IAEGIYSY------GVTRHRH 271 (306)
Q Consensus 215 ~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~----------------~~~~e-~~~n~~~Y------~~~~HrH 271 (306)
++|+|+||+++++++ +|+|+||||+|||||+++++ ++|++ +++|+.|| ++..|||
T Consensus 137 ~~laL~PL~~~~~i~--~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~erh 214 (336)
T PRK08040 137 LLTAIKPLIDQAGLS--RLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVREERR 214 (336)
T ss_pred HHHHHHHHHHhCCCe--EEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchHhhh
Confidence 999999999987654 69999999999999999988 88998 99999999 9999999
Q ss_pred -hhHHHHHhhcccCCcceEEEEeeeeccccccccc
Q 021865 272 -VPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 272 -~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~~ 305 (306)
+|||+|.|+ +.+++|+||||++||+|||+..
T Consensus 215 ~~~Ei~kiL~---~~~~~vs~t~~~vPv~rG~~~t 246 (336)
T PRK08040 215 LVDQVRKILQ---DEGLPISVSCVQSPVFYGHAQM 246 (336)
T ss_pred hHHHHHHHhC---CCCCeEEEEeEEecchhcEEEE
Confidence 999999996 3568899999999999999864
No 8
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-54 Score=416.03 Aligned_cols=214 Identities=22% Similarity=0.345 Sum_probs=187.7
Q ss_pred ccCccEEEEEccccHHHHHHHHHHh--cCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecC
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~--~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~al 137 (306)
|.+|+||+|+|||||+|+||+|+|. +||.+++..++|++++|+++.. .+.++ .+++.++++++++|+||+|+
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~-----~~~~l-~~~~~~~~~~~~vD~vFla~ 74 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPF-----AGKNL-RVREVDSFDFSQVQLAFFAA 74 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeecc-----CCcce-EEeeCChHHhcCCCEEEEcC
Confidence 3467899999999999999999999 7999999999999999998872 22233 24444444567899999999
Q ss_pred CccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccC---CcEEecCCChHH
Q 021865 138 PHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN---ARLVANPGCYPT 213 (306)
Q Consensus 138 p~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~---a~lVAnPGCy~T 213 (306)
||+++.++++++ ++|++|||||+|||+++ +| ||+||+|+++|+. +++|||||||+|
T Consensus 75 p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~---------~p-----------l~lPEvn~~~i~~~~~~~iIAnPgC~~t 134 (336)
T PRK05671 75 GAAVSRSFAEKARAAGCSVIDLSGALPSAQ---------AP-----------NVVPEVNAERLASLAAPFLVSSPSASAV 134 (336)
T ss_pred CHHHHHHHHHHHHHCCCeEEECchhhcCCC---------CC-----------EEecccCHHHHccccCCCEEECCCcHHH
Confidence 999999999887 88999999999999963 22 9999999999988 899999999999
Q ss_pred HHhhhhhHHHhccCCCCceEEEEeeeecCccCcccccc--ccHHHHhcCceee-----------cCC---------CC--
Q 021865 214 SIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA--NLYSEIAEGIYSY-----------GVT---------RH-- 269 (306)
Q Consensus 214 a~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~--~~~~e~~~n~~~Y-----------~~~---------~H-- 269 (306)
+++|+|+||+ +++++++|+|+||||+||||++++++ .++.++. |++|| ++. +|
T Consensus 135 ~~~laL~PL~--~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~-n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~ 211 (336)
T PRK05671 135 ALAVALAPLK--GLLDIQRVQVTACLAVSSLGREGVSELARQTAELL-NARPLEPRFFDRQVAFNLLAQVGAPDAQGHTA 211 (336)
T ss_pred HHHHHHHHHH--HhcCCCEEEEEEeecCcccCcccchHHHHHHHHHh-CCCCccccccccccccccccccCccccCCccH
Confidence 9999999998 44677899999999999999999999 7788888 99999 887 99
Q ss_pred ---CchhHHHHHhhcccCCcceEEEEeeeeccccccccc
Q 021865 270 ---RHVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 270 ---rH~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~~ 305 (306)
||+|||+|.|+. .+++|+||||++||+|||+..
T Consensus 212 eE~r~~~Ei~kiL~~---~~~~v~~t~~~vPv~rG~~~t 247 (336)
T PRK05671 212 LERRLVAELRQLLGL---PELKISVTCIQVPVFFGDSLS 247 (336)
T ss_pred HHHHHHHHHHHHhCC---CCCcEEEEeEEechhhhEeeE
Confidence 999999999964 257799999999999999853
No 9
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=2.4e-54 Score=416.35 Aligned_cols=217 Identities=22% Similarity=0.405 Sum_probs=191.3
Q ss_pred CccEEEEEccccHHHHHHHHHHhc--CCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~--HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
+.+||+|+|||||+|+||+|+|++ ||.+++..++|++++|+.+.+. +.++ .+++++++++.++|+||+|+||
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~-----~~~~-~v~~~~~~~~~~~D~vf~a~p~ 79 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFE-----GRDY-TVEELTEDSFDGVDIALFSAGG 79 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeec-----Ccee-EEEeCCHHHHcCCCEEEECCCc
Confidence 457999999999999999999997 9999999999999999998752 2222 2344444556789999999999
Q ss_pred cchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCc-------EEecCCCh
Q 021865 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNAR-------LVANPGCY 211 (306)
Q Consensus 140 ~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~-------lVAnPGCy 211 (306)
++|+++++.+ ++|++|||||+||||++ ++| ||+||+||+.|+.++ +|||||||
T Consensus 80 ~~s~~~~~~~~~~g~~VIDlS~~fR~~~--------~~p-----------~~vPEvn~~~i~~~~~~~~~~~iIanPgC~ 140 (344)
T PLN02383 80 SISKKFGPIAVDKGAVVVDNSSAFRMEE--------GVP-----------LVIPEVNPEAMKHIKLGKGKGALIANPNCS 140 (344)
T ss_pred HHHHHHHHHHHhCCCEEEECCchhhcCC--------CCc-----------eECCCcCHHHHHhhhhcccCCcEEECCCcH
Confidence 9999999987 78999999999999997 233 899999999888764 99999999
Q ss_pred HHHHhhhhhHHHhccCCCCceEEEEeeeecCccCcccccccc------------HHHHhcCceeecCCCCCch-------
Q 021865 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------------YSEIAEGIYSYGVTRHRHV------- 272 (306)
Q Consensus 212 ~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~------------~~e~~~n~~~Y~~~~HrH~------- 272 (306)
+|+++|+|+||++++++ ++|+|+||||+||||++++++++ ++++.+++++|++..|||+
T Consensus 141 ~t~~~laL~PL~~~~~i--~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~ 218 (344)
T PLN02383 141 TIICLMAVTPLHRHAKV--KRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYN 218 (344)
T ss_pred HHHHHHHHHHHHHcCCe--eEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCC
Confidence 99999999999998765 68999999999999999999987 8999999999999999999
Q ss_pred -hHHH--HHhhcc-cCCcceEEEEeeeeccccccccc
Q 021865 273 -PEIE--QGLTGF-ASSKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 273 -pEI~--q~L~~~-~~~~~~v~FtphlvP~~RGil~~ 305 (306)
|||+ +++.++ .+.+++|+||||++||+|||+.+
T Consensus 219 ~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~s 255 (344)
T PLN02383 219 EEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAES 255 (344)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEE
Confidence 9999 999554 46778999999999999999864
No 10
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=5.5e-54 Score=412.83 Aligned_cols=226 Identities=26% Similarity=0.417 Sum_probs=199.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE-eccccCCcccccccCCc-----cc--CCCccccccCcccCCCCCEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHL-----IS--QDLPTMVAVKDADFSNVDAVFC 135 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l-~S~~~aGk~l~~~~p~l-----~~--~~~~~~~~~~~~~~~~~DvVF~ 135 (306)
+||+|+|||||+|++|+++|.+||+++++.+ .+++++|+.+.+.+|+. .. .++ .++..+++.+.++|+||+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~DvVf~ 79 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDL-PIVEPEPVASKDVDIVFS 79 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCcccccee-EEEeCCHHHhccCCEEEE
Confidence 5899999999999999999999999999988 56778999999888762 11 111 233344444578999999
Q ss_pred cCCccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHH
Q 021865 136 CLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTS 214 (306)
Q Consensus 136 alp~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta 214 (306)
|+||+++.++++++ ++|++|||||+||||++. .||..|++|.++ ||+||++|++|+++++|||||||+|+
T Consensus 80 a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~--------~~~~~p~vn~~~-~~~~e~~~~~~~~~~iVanPgC~~t~ 150 (341)
T TIGR00978 80 ALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPD--------VPLIIPEVNSDH-LELLKVQKERGWKGFIVTNPNCTTAG 150 (341)
T ss_pred eCCHHHHHHHHHHHHHCCCEEEECChhhccCCC--------CceeccccCHHH-HhhHHhhhhhccCccEEeCCCcHHHH
Confidence 99999999999877 789999999999999984 699999999998 99999999999999999999999999
Q ss_pred HhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeecCCC-CCchhHHHHHhhcccCC-----cce
Q 021865 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASS-----KVT 288 (306)
Q Consensus 215 ~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~~-HrH~pEI~q~L~~~~~~-----~~~ 288 (306)
++|+|+||+++++|+ +|+||++||+||||+++++ +.++++|++||+.+. |||+|||+|.|++..+. .++
T Consensus 151 ~~lal~pL~~~~~i~--~v~v~t~~gvSgaG~~~~~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~~~~~~~~~~~~ 225 (341)
T TIGR00978 151 LTLALKPLIDAFGIK--KVHVTTMQAVSGAGYPGVP---SMDILDNIIPHIGGEEEKIERETRKILGKLENGKIEPAPFS 225 (341)
T ss_pred HHHHHHHHHHhCCCc--EEEEEEEEccCCCCCCCCc---cchhhCCeEecCcHHHHHHHHHHHHHhCccccCcccCCCce
Confidence 999999999987664 8999999999999999876 589999999999997 99999999999876554 678
Q ss_pred EEEEeeeecccccccc
Q 021865 289 VSFTPHLMPMVTVSLR 304 (306)
Q Consensus 289 v~FtphlvP~~RGil~ 304 (306)
|+||||++||+|||+.
T Consensus 226 v~~t~~~vPv~rG~~~ 241 (341)
T TIGR00978 226 VSATTTRVPVLDGHTE 241 (341)
T ss_pred EEEEEEEcCccccEEE
Confidence 9999999999999985
No 11
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=7.8e-52 Score=399.04 Aligned_cols=227 Identities=24% Similarity=0.444 Sum_probs=199.1
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEE-eccccCCcccccccCCc-----cc--CCCccccccCcccCCCCCEE
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHL-----IS--QDLPTMVAVKDADFSNVDAV 133 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l-~S~~~aGk~l~~~~p~l-----~~--~~~~~~~~~~~~~~~~~DvV 133 (306)
+|+||+|+|||||+|++|+++|.+||+++++.+ .+++++|+.+.+.+|+. .. .++ .++..+++.+.++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADM-EVVSTDPEAVDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccce-EEEeCCHHHhcCCCEE
Confidence 468999999999999999999999999999998 78889999998877652 21 111 2333344455689999
Q ss_pred EecCCccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcc-cCCcEEecCCCh
Q 021865 134 FCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI-KNARLVANPGCY 211 (306)
Q Consensus 134 F~alp~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i-~~a~lVAnPGCy 211 (306)
|+|+|++++.++++++ +.|++|||+|+|||+++ +.||..|++|+++ ||+||++|+++ +++++|+|||||
T Consensus 81 f~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~--------~~~~~~p~vn~~~-yg~~e~~~~~~~~~~~iVa~p~C~ 151 (349)
T PRK08664 81 FSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDP--------DVPLVIPEVNPEH-LELIEVQRKRRGWDGFIVTNPNCS 151 (349)
T ss_pred EEeCChhHHHHHHHHHHHCCCEEEECCchhcCCC--------CCCcCChhhCHHH-HcChHhhHhhccCCceEEEccCHH
Confidence 9999999999999877 78999999999999987 3789999999998 99999999988 888999999999
Q ss_pred HHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeecCCC-CCchhHHHHHhhcccCC-----
Q 021865 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASS----- 285 (306)
Q Consensus 212 ~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~~-HrH~pEI~q~L~~~~~~----- 285 (306)
+|+++|+|+||.+.| +++++||+++|+||||+++++ +.++++|++||+.+. |||+|||+|.|+...+.
T Consensus 152 ~t~~~l~l~pL~~~g---l~~i~v~~~~g~SgaG~~~~~---~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~~ 225 (349)
T PRK08664 152 TIGLVLALKPLMDFG---IERVHVTTMQAISGAGYPGVP---SMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGKIVPA 225 (349)
T ss_pred HHHHHHHHHHHHHCC---CcEEEEEEEeccccCCcccch---hhhhhcCcccccCchhhhhhHHHHHHhhhcccccccCC
Confidence 999999999999965 368999999999999999976 689999999999997 99999999999876443
Q ss_pred cceEEEEeeeecccccccc
Q 021865 286 KVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 286 ~~~v~FtphlvP~~RGil~ 304 (306)
.++|+||||++|++|||+.
T Consensus 226 ~~~v~~t~~~vPv~rG~~~ 244 (349)
T PRK08664 226 DFPISATCHRVPVIDGHTE 244 (349)
T ss_pred CceEEEEeEEccccccEEE
Confidence 5789999999999999985
No 12
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-51 Score=373.81 Aligned_cols=230 Identities=44% Similarity=0.671 Sum_probs=197.1
Q ss_pred CCcccccccCccccccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccC--
Q 021865 46 PTKSLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK-- 123 (306)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~-- 123 (306)
+.+++++++....++++..||+++||+||+|.+|+++|.+||++++..++||+.+|+.+. .|++++.++. ++...|
T Consensus 2 ss~s~r~s~~~~~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~-~ytk~eiqy~-~lst~D~~ 79 (340)
T KOG4354|consen 2 SSMSFRVSASSSVKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE-VYTKLEIQYA-DLSTVDAV 79 (340)
T ss_pred ccccccccCCcccccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc-Ccchhheeec-ccchhhHH
Confidence 456667777777888888999999999999999999999999999999999999999998 8888864322 111111
Q ss_pred -cccCCCCCEEEecCCccchHHHHHhcC--C-CCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccc-hhc
Q 021865 124 -DADFSNVDAVFCCLPHGTTQEIIKGLP--K-SLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS-RED 198 (306)
Q Consensus 124 -~~~~~~~DvVF~alp~~~s~~~~~~l~--~-g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~-r~~ 198 (306)
-++-..+|.+.++||..+.+.++..++ . ..++||+|+|||+.+ | .+++|||||++ ||+
T Consensus 80 klee~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p-----------~------~~w~YGLpElndRe~ 142 (340)
T KOG4354|consen 80 KLEEPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQP-----------H------KEWVYGLPELNDRED 142 (340)
T ss_pred HhhcCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCc-----------c------hheeecCcccccHHH
Confidence 111135799999999999999998762 3 478999999999875 2 34599999999 999
Q ss_pred ccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeecCCCCCchhHHHHH
Q 021865 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQG 278 (306)
Q Consensus 199 i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~~HrH~pEI~q~ 278 (306)
|+++++|||||||+|+++|+|.||++..+..+ .|+++||+||||+++++.+.+.++++|+.||+++.|+|+|||+|.
T Consensus 143 i~na~~iaNPGCYaTgsQl~l~Pllk~i~g~p---~ifgvSGySGAGtkpspkNd~~~l~nnlipY~ltdHiHerEIs~r 219 (340)
T KOG4354|consen 143 IKNARLIANPGCYATGSQLPLVPLLKAILGKP---EIFGVSGYSGAGTKPSPKNDYSELANNLIPYGLTDHIHEREISQR 219 (340)
T ss_pred HhhhhhccCCCcccccCcccchHHHHHhcCCc---ceeeeccccCCCCCCCCccCHHHHhcCCccccccccchhHhHHHh
Confidence 99999999999999999999999999854443 389999999999999999999999999999999999999999997
Q ss_pred hhcccCCcceEEEEeeeeccccccc
Q 021865 279 LTGFASSKVTVSFTPHLMPMVTVSL 303 (306)
Q Consensus 279 L~~~~~~~~~v~FtphlvP~~RGil 303 (306)
+ +++|.||||++||+|||-
T Consensus 220 ~------k~~VaF~PHv~qwfqGi~ 238 (340)
T KOG4354|consen 220 S------KVTVAFTPHVMQWFQGIQ 238 (340)
T ss_pred h------CCceeechhHHHHhhhce
Confidence 6 468999999999999985
No 13
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=6.2e-50 Score=383.92 Aligned_cols=215 Identities=21% Similarity=0.379 Sum_probs=187.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhc--CCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~--HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|+||+|+|||||+|++|+|+|++ ||.++++.+++++++|+.+. +.+.++ .+.+++..++.++|+||+|+|++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-----~~g~~i-~v~d~~~~~~~~vDvVf~A~g~g 74 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-----FKGKEL-KVEDLTTFDFSGVDIALFSAGGS 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-----eCCcee-EEeeCCHHHHcCCCEEEECCChH
Confidence 57999999999999999999997 89999999999999999876 222222 12233334457899999999999
Q ss_pred chHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCC---cEEecCCChHHHHh
Q 021865 141 TTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA---RLVANPGCYPTSIQ 216 (306)
Q Consensus 141 ~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a---~lVAnPGCy~Ta~~ 216 (306)
+++++++++ ++|++|||||+|||+++. + .||+||+|++.|+.+ ++|+|||||+|+++
T Consensus 75 ~s~~~~~~~~~~G~~VIDlS~~~R~~~~------------~-------p~~lpevn~~~i~~~~~~~iVanp~C~~t~~~ 135 (334)
T PRK14874 75 VSKKYAPKAAAAGAVVIDNSSAFRMDPD------------V-------PLVVPEVNPEALAEHRKKGIIANPNCSTIQMV 135 (334)
T ss_pred HHHHHHHHHHhCCCEEEECCchhhcCCC------------C-------CeEcCCcCHHHHhhhhcCCeEECccHHHHHHH
Confidence 999999887 889999999999999862 1 289999999999876 79999999999999
Q ss_pred hhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCc-----------e----eecCCCCC-------chhH
Q 021865 217 LPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGI-----------Y----SYGVTRHR-------HVPE 274 (306)
Q Consensus 217 LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~-----------~----~Y~~~~Hr-------H~pE 274 (306)
|+|+||.+++++ ++++|||+||+||||+++++++ |.|+.+++ + +|++..|| |+||
T Consensus 136 l~l~pL~~~~~i--~~i~vtt~~~~SGaG~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~e 212 (334)
T PRK14874 136 VALKPLHDAAGI--KRVVVSTYQAVSGAGKAGMEEL-FEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKE 212 (334)
T ss_pred HHHHHHHHhcCc--eEEEEEEEechhhCChhhHHHH-HHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHH
Confidence 999999998655 4799999999999999999987 99999988 5 99999999 9999
Q ss_pred ---HHHHhhccc-CCcceEEEEeeeeccccccccc
Q 021865 275 ---IEQGLTGFA-SSKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 275 ---I~q~L~~~~-~~~~~v~FtphlvP~~RGil~~ 305 (306)
|+|++.++. +.+++|+||||++|+.|||+..
T Consensus 213 E~ki~~el~~il~~~~~~v~~t~~rvPv~~G~~~t 247 (334)
T PRK14874 213 EMKMVNETKKILGDPDLKVSATCVRVPVFTGHSES 247 (334)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEcceeccEEEE
Confidence 999998876 4568899999999999999863
No 14
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=5.1e-47 Score=364.81 Aligned_cols=213 Identities=22% Similarity=0.345 Sum_probs=184.6
Q ss_pred EEEEEccccHHHHHHHHHHhc--CCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 65 RIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~--HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
||+|+|||||+|+||+++|.+ ||.+++..+++++++|+.+.. .+.++ .+.+++.+++.++|+||+|+|++.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~-----~~~~~-~~~~~~~~~~~~~D~v~~a~g~~~s 74 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF-----KGKEL-EVNEAKIESFEGIDIALFSAGGSVS 74 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee-----CCeeE-EEEeCChHHhcCCCEEEECCCHHHH
Confidence 689999999999999999997 999999999999999998872 22222 2334444556789999999999999
Q ss_pred HHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCc---EEecCCChHHHHhhh
Q 021865 143 QEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNAR---LVANPGCYPTSIQLP 218 (306)
Q Consensus 143 ~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~---lVAnPGCy~Ta~~La 218 (306)
+++++.+ ++|++|||+|+|||+++. . .|++||+|++.+++++ +|+|||||+|+++|+
T Consensus 75 ~~~a~~~~~~G~~VID~ss~~R~~~~--------~-----------p~~vpevN~~~i~~~~~~~iianp~C~~t~~~l~ 135 (339)
T TIGR01296 75 KEFAPKAAKCGAIVIDNTSAFRMDPD--------V-----------PLVVPEVNLEDLKEFNTKGIIANPNCSTIQMVVV 135 (339)
T ss_pred HHHHHHHHHCCCEEEECCHHHhCCCC--------C-----------CEEeCCcCHHHHhhCccCCEEECCCcHHHHHHHH
Confidence 9999877 889999999999999862 1 2899999999987754 999999999999999
Q ss_pred hhHHHhccCCCCceEEEEeeeecCccCcccccc--------ccHHHHhc-------CceeecCC----CC-------Cch
Q 021865 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA--------NLYSEIAE-------GIYSYGVT----RH-------RHV 272 (306)
Q Consensus 219 L~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~--------~~~~e~~~-------n~~~Y~~~----~H-------rH~ 272 (306)
|+||+++++| ++++|+|++|+||||++++++ +++.+..+ ++++|++. .| +|+
T Consensus 136 l~pL~~~~~i--~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~ 213 (339)
T TIGR01296 136 LKPLHDEAKI--KRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYT 213 (339)
T ss_pred HHHHHHhcCc--cEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCC
Confidence 9999998755 689999999999999999998 56677666 89999998 78 999
Q ss_pred hH---HHHHhhcccC-CcceEEEEeeeecccccccc
Q 021865 273 PE---IEQGLTGFAS-SKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 273 pE---I~q~L~~~~~-~~~~v~FtphlvP~~RGil~ 304 (306)
|| |+++|.++.+ .+++|+||||++|+.|||+.
T Consensus 214 ~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~ 249 (339)
T TIGR01296 214 KEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSE 249 (339)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEE
Confidence 99 9999988765 56889999999999999975
No 15
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-44 Score=349.10 Aligned_cols=216 Identities=19% Similarity=0.347 Sum_probs=173.1
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCce---EEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFG---IKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~e---l~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
+.+||||||||||+|+||+|+|++||+++ +.+++|++++|+.+. +.+.++ .+++++++++.++|+||+|+|
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-----~~~~~l-~v~~~~~~~~~~~Divf~a~~ 77 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-----FKGREI-IIQEAKINSFEGVDIAFFSAG 77 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-----eCCcce-EEEeCCHHHhcCCCEEEECCC
Confidence 34799999999999999999999999998 888999999999985 333333 344555566778999999999
Q ss_pred ccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCC-cEEecCCChHHHHh
Q 021865 139 HGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-RLVANPGCYPTSIQ 216 (306)
Q Consensus 139 ~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a-~lVAnPGCy~Ta~~ 216 (306)
+++|+++++.+ ++|++|||||+|||+++. +| |++||+|++.|+++ ++|||||||+|+++
T Consensus 78 ~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~--------vp-----------lvvPEvN~e~i~~~~~iIanPnC~tt~~~ 138 (347)
T PRK06728 78 GEVSRQFVNQAVSSGAIVIDNTSEYRMAHD--------VP-----------LVVPEVNAHTLKEHKGIIAVPNCSALQMV 138 (347)
T ss_pred hHHHHHHHHHHHHCCCEEEECchhhcCCCC--------CC-----------eEeCCcCHHHHhccCCEEECCCCHHHHHH
Confidence 99999999887 789999999999999652 22 89999999999875 79999999999999
Q ss_pred hhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHH-------------------------hcCceeec-CC-CC
Q 021865 217 LPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEI-------------------------AEGIYSYG-VT-RH 269 (306)
Q Consensus 217 LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~-------------------------~~n~~~Y~-~~-~H 269 (306)
|+|+||+++++| ++|+|+||||+||||++++++ +..++ +.|+.|+. .+ ..
T Consensus 139 laL~PL~~~~~i--~~v~V~t~qavSGAG~~gv~e-L~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~ 215 (347)
T PRK06728 139 TALQPIRKVFGL--ERIIVSTYQAVSGSGIHAIQE-LKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDN 215 (347)
T ss_pred HHHHHHHHcCCc--cEEEEEEeecccccchhhHHH-HHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccccC
Confidence 999999998765 689999999999999999987 33333 33455553 11 11
Q ss_pred CchhH---HHHHhhccc-CCcceEEEEeeeeccccccccc
Q 021865 270 RHVPE---IEQGLTGFA-SSKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 270 rH~pE---I~q~L~~~~-~~~~~v~FtphlvP~~RGil~~ 305 (306)
-++-| |+.+..++. ..+++|+.|+.+||+.||+..+
T Consensus 216 g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~s 255 (347)
T PRK06728 216 DFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSES 255 (347)
T ss_pred CccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEE
Confidence 12222 445555554 3568999999999999999754
No 16
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-42 Score=335.83 Aligned_cols=216 Identities=15% Similarity=0.237 Sum_probs=163.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCce---EEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFG---IKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~e---l~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
|++|||+|||||+|+||+|+|++||++. +..++++++.|+. +.+.+......+..+++++.++|+||+|+|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~-----~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~ 75 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAA-----PSFGGKEGTLQDAFDIDALKKLDIIITCQGG 75 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcc-----cccCCCcceEEecCChhHhcCCCEEEECCCH
Confidence 5899999999999999999999999987 8886655544443 3455433322222224566789999999999
Q ss_pred cchHHHHHhc-CCC--CeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCC-----cEEecCCCh
Q 021865 140 GTTQEIIKGL-PKS--LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-----RLVANPGCY 211 (306)
Q Consensus 140 ~~s~~~~~~l-~~g--~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a-----~lVAnPGCy 211 (306)
++|.++++.+ ++| +.|||||+|||+++ ++ .|++||+|+++|+++ ++|||||||
T Consensus 76 ~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~--------dv-----------plvvPEvN~e~i~~~~~~g~~iIanPnC~ 136 (369)
T PRK06598 76 DYTNEVYPKLRAAGWQGYWIDAASTLRMKD--------DA-----------IIILDPVNRDVIDDALANGVKTFVGGNCT 136 (369)
T ss_pred HHHHHHHHHHHhCCCCeEEEECChHHhCCC--------CC-----------cEEcCCcCHHHHHhhhhcCCCEEEcCChH
Confidence 9999999987 788 67999999999987 23 466666666666543 589999999
Q ss_pred HHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHH----------------------------------
Q 021865 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEI---------------------------------- 257 (306)
Q Consensus 212 ~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~---------------------------------- 257 (306)
+|+++|+|+||++.+++ ++|+|+||||+||||+++++++. .++
T Consensus 137 tt~~~laL~PL~~~~~i--~~viVst~qavSGAG~~g~~eL~-~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (369)
T PRK06598 137 VSLMLMALGGLFKNDLV--EWVSVMTYQAASGAGARNMRELL-TQMGALHGAVADELADPASAILDIDRKVTELMRSGDL 213 (369)
T ss_pred HHHHHHHHHHHHhcCCc--eEEEEEeeecccccCHHHHHHHH-HHHHHHhhhccccccccchhhhhhhhhhhhhcccCCC
Confidence 99999999999998754 57999999999999999887643 322
Q ss_pred ---------hcCceeecC-C-CCCchhH---HHHHhhcccC---CcceEEEEeeeeccccccccc
Q 021865 258 ---------AEGIYSYGV-T-RHRHVPE---IEQGLTGFAS---SKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 258 ---------~~n~~~Y~~-~-~HrH~pE---I~q~L~~~~~---~~~~v~FtphlvP~~RGil~~ 305 (306)
+.|+.||.- + ..-++-| |+.+..++.+ ..++|+.|+.+||+.||+..+
T Consensus 214 ~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~s 278 (369)
T PRK06598 214 PTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQA 278 (369)
T ss_pred CcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEE
Confidence 335555532 1 2222333 4556666654 578999999999999999754
No 17
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-38 Score=298.67 Aligned_cols=221 Identities=23% Similarity=0.346 Sum_probs=175.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhc-CCCce-EEEEeccccCCcccccccCCcccCCCccccc-cCcccCCCCCEEEecCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFG-IKLMTADRKAGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~-HP~~e-l~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~-~~~~~~~~~DvVF~alp~ 139 (306)
|+||||+||||.||++++++|.+ |+.++ +.+++|.+++|++..+ +.+......+. .+..+++++|+||+|+|.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~----f~~~~~~v~~~~~~~~~~~~~Divf~~ag~ 76 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE----FGGKSIGVPEDAADEFVFSDVDIVFFAAGG 76 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc----ccCccccCccccccccccccCCEEEEeCch
Confidence 57999999999999999999997 99987 7778899999998432 22211111111 334556789999999999
Q ss_pred cchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhhh
Q 021865 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLP 218 (306)
Q Consensus 140 ~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~La 218 (306)
++|.++++.+ ++|+.|||+|++||+++ ++|+++||+|.++ |-|.++ ++ .+|+||||.+..++++
T Consensus 77 ~~s~~~~p~~~~~G~~VIdnsSa~Rm~~--------DVPLVVPeVN~~~---l~~~~~---rg-~IianpNCst~~l~~a 141 (334)
T COG0136 77 SVSKEVEPKAAEAGCVVIDNSSAFRMDP--------DVPLVVPEVNPEH---LIDYQK---RG-FIIANPNCSTIQLVLA 141 (334)
T ss_pred HHHHHHHHHHHHcCCEEEeCCcccccCC--------CCCEecCCcCHHH---HHhhhh---CC-CEEECCChHHHHHHHH
Confidence 9999999988 78999999999999997 5999999999987 434332 22 6999999999999999
Q ss_pred hhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhc----------------CceeecCC--CCCchhH---HHH
Q 021865 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAE----------------GIYSYGVT--RHRHVPE---IEQ 277 (306)
Q Consensus 219 L~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~----------------n~~~Y~~~--~HrH~pE---I~q 277 (306)
|+||+++. ++++|+|+|||++||||++++.+ ++.++.. |+.||.-. ..-|+-| |+.
T Consensus 142 L~PL~~~~--~i~~v~VsTyQAvSGAG~~~~~e-l~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~EE~K~~~ 218 (334)
T COG0136 142 LKPLHDAF--GIKRVVVSTYQAVSGAGAEGGVE-LAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEA 218 (334)
T ss_pred HHHHHhhc--CceEEEEEEeehhhhcCccchhh-HHHHHhhhccCcccccccccccccccccCCccccCCccHHHHHHHH
Confidence 99999974 46799999999999999988886 3444432 99999876 2334555 334
Q ss_pred HhhcccC-CcceEEEEeeeeccccccccc
Q 021865 278 GLTGFAS-SKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 278 ~L~~~~~-~~~~v~FtphlvP~~RGil~~ 305 (306)
+..++.+ ..++|++|++++|+.|||..+
T Consensus 219 Et~KIlg~~~~~VsatcvRVPV~~GHse~ 247 (334)
T COG0136 219 ETRKILGDPDIKVSATCVRVPVFYGHSEA 247 (334)
T ss_pred HHHHHhCCCCCceEEEEEEcceecccceE
Confidence 4555555 779999999999999999754
No 18
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-37 Score=292.67 Aligned_cols=215 Identities=15% Similarity=0.191 Sum_probs=176.9
Q ss_pred ccEEEEEccccHHHHHHHHHHh--cCCCceEEEEecc-ccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTAD-RKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~--~HP~~el~~l~S~-~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
.++||| ||||.+|++++++|. ++|.-++.++.++ +++|+.+.. ++.++ .++.+++++|+++|++|| .+.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f-----~g~~~-~V~~l~~~~f~~vDia~f-ag~ 74 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF-----NNKAV-EQIAPEEVEWADFNYVFF-AGK 74 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEE-----CCEEE-EEEECCccCcccCCEEEE-cCH
Confidence 479999 999999999999998 5898899999998 999998863 44444 355677778899999999 999
Q ss_pred cchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhhh
Q 021865 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLP 218 (306)
Q Consensus 140 ~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~La 218 (306)
++|+++++.+ ++|+.|||+|+.||+++ ++|+++||+|.+.+..+ +..++||||||.+++++++
T Consensus 75 ~~s~~~ap~a~~aG~~VIDnSsa~Rmd~--------dVPLVVPEVN~e~l~~~--------~~~~IIanPNCsTi~l~~a 138 (322)
T PRK06901 75 MAQAEHLAQAAEAGCIVIDLYGICAALA--------NVPVVVPSVNDEQLAEL--------RQRNIVSLPDPQVSQLALA 138 (322)
T ss_pred HHHHHHHHHHHHCCCEEEECChHhhCCC--------CCCeecccCCHHHHhcC--------cCCCEEECCcHHHHHHHHH
Confidence 9999999976 88999999999999997 69999999999977533 2346999999999999999
Q ss_pred hhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHh--cCceeecCCCCC-------chhH-HHHHhhcccCCcc-
Q 021865 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIA--EGIYSYGVTRHR-------HVPE-IEQGLTGFASSKV- 287 (306)
Q Consensus 219 L~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~--~n~~~Y~~~~Hr-------H~pE-I~q~L~~~~~~~~- 287 (306)
|+||++. .++++++|+|||++||||++++++ +..++. .|.+||....|+ |..+ |+.+..++. .++
T Consensus 139 L~pL~~~--~~l~rv~VsTyQavSGaG~~gv~e-L~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKIl-~~l~ 214 (322)
T PRK06901 139 LAPFLQE--QPLSQIFVTSLLPASYTDAETVKK-LAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKIF-PQLE 214 (322)
T ss_pred HHHHHHh--cCCcEEEEEeecchhhcCHhHHHH-HHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHHh-CCcc
Confidence 9999976 467899999999999999999997 444443 466777665542 1101 666666665 566
Q ss_pred eEEEEeeeeccccccccc
Q 021865 288 TVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 288 ~v~FtphlvP~~RGil~~ 305 (306)
+|+.|+.++|+.+|+..+
T Consensus 215 ~VsaTcVRVPV~~GHs~s 232 (322)
T PRK06901 215 NVTFHSIQVPVFYGLAQM 232 (322)
T ss_pred cEEEEEEEcceeccEEEE
Confidence 899999999999998654
No 19
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=1.8e-35 Score=286.33 Aligned_cols=217 Identities=13% Similarity=0.175 Sum_probs=168.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc---eEEEEeccccCCcccccccCCcccCCCccccccCcc-cCCCCCEEEecCCc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF---GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA-DFSNVDAVFCCLPH 139 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~---el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~-~~~~~DvVF~alp~ 139 (306)
+||||+||||.||++++++|++|+++ ++.++++++++|+.+. +.+... .++++++. ++.++|+||+|+|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~-----f~~~~~-~v~~~~~~~~~~~vDivffa~g~ 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPS-----FGGTTG-TLQDAFDIDALKALDIIITCQGG 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCC-----CCCCcc-eEEcCcccccccCCCEEEEcCCH
Confidence 48999999999999999999965554 5778888889998664 233333 34455443 67899999999999
Q ss_pred cchHHHHHhc-CCC--CeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcE--EecCCChHHH
Q 021865 140 GTTQEIIKGL-PKS--LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARL--VANPGCYPTS 214 (306)
Q Consensus 140 ~~s~~~~~~l-~~g--~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~l--VAnPGCy~Ta 214 (306)
++|.++++.+ ++| +.|||+|++||+++ ++|+++||+|++.+.. + ....+ |+||||.++.
T Consensus 75 ~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~--------dVPLVVPeVN~~~i~~-------~-~~~gi~~ianPNCst~~ 138 (366)
T TIGR01745 75 DYTNEIYPKLRESGWQGYWIDAASSLRMKD--------DAVIILDPVNQDVITD-------G-LNNGIRTFVGGNCTVSL 138 (366)
T ss_pred HHHHHHHHHHHhCCCCeEEEECChhhhcCC--------CCCEEeCCcCHHHHHh-------H-HhCCcCeEECcCHHHHH
Confidence 9999999987 789 88999999999998 6999999999985431 1 12345 8999999999
Q ss_pred HhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHh------------------------------------
Q 021865 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIA------------------------------------ 258 (306)
Q Consensus 215 ~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~------------------------------------ 258 (306)
++++|+||++.. ++++|+|+|||++||||+++++++ ..++.
T Consensus 139 l~~aL~pL~~~~--~i~~v~VsTyQAvSGAG~~g~~eL-~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 215 (366)
T TIGR01745 139 MLMSLGGLFAND--LVEWVSVATYQAASGGGARHMREL-LTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVD 215 (366)
T ss_pred HHHHHHHHHhcc--CccEEEEEechhhhhcCHHHHHHH-HHHHHHHhccccccccccchhhhhhccccccccccCCCCcc
Confidence 999999999874 567999999999999999998764 33332
Q ss_pred -------cCceeecC--CCCCchhH---HHHHhhcccC--CcceEEEEeeeeccccccccc
Q 021865 259 -------EGIYSYGV--TRHRHVPE---IEQGLTGFAS--SKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 259 -------~n~~~Y~~--~~HrH~pE---I~q~L~~~~~--~~~~v~FtphlvP~~RGil~~ 305 (306)
.|+.||.- ...-++-| |+.+..++.+ .+++|+.|+.+||+.||+..+
T Consensus 216 ~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~s 276 (366)
T TIGR01745 216 NFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQA 276 (366)
T ss_pred cCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEE
Confidence 35555532 12222333 5556666654 468999999999999999765
No 20
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.97 E-value=3.6e-31 Score=243.32 Aligned_cols=231 Identities=23% Similarity=0.364 Sum_probs=185.1
Q ss_pred cEEE-EEccccHHHHHHHHHHhcCCCceEEEE-eccccCCcccccccCCcccCCCc------cccccCcccCCCCCEEEe
Q 021865 64 VRIG-LLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLP------TMVAVKDADFSNVDAVFC 135 (306)
Q Consensus 64 ~kVa-IiGATGyvG~ELlrlL~~HP~~el~~l-~S~~~aGk~l~~~~p~l~~~~~~------~~~~~~~~~~~~~DvVF~ 135 (306)
.|++ |+||||.+|++++-+|.+||++++..+ +|.|++||++.+.-.|-+..-++ .+++.+.+.|.+||+||+
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIvfs 83 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIVFS 83 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhcccccEEEe
Confidence 3555 999999999999999999999999998 78999999998766554321111 134556677889999999
Q ss_pred cCCccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccc-cchhcccCCcEEecCCChHH
Q 021865 136 CLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTE-ISREDIKNARLVANPGCYPT 213 (306)
Q Consensus 136 alp~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpE-l~r~~i~~a~lVAnPGCy~T 213 (306)
.++.+.+.++.+.+ ++|..|||++..||..+ ++|+++|++|+++.-|+-- +.-.....+-+|+||||++.
T Consensus 84 gldad~ageiek~f~eag~iiVsNaknyRre~--------~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa 155 (361)
T KOG4777|consen 84 GLDADIAGEIEKLFAEAGTIIVSNAKNYRRED--------GVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTA 155 (361)
T ss_pred cCCchhhhhhhHHHHhcCeEEEeCchhcccCC--------CCceEecccCHHHhhhheeccccCCCCCceEEecCCCCee
Confidence 99999999999987 88999999999999998 6999999999998765421 11122456789999999999
Q ss_pred HHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeecCC-CCCchhHHHHHhhccc----C----
Q 021865 214 SIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVT-RHRHVPEIEQGLTGFA----S---- 284 (306)
Q Consensus 214 a~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~-~HrH~pEI~q~L~~~~----~---- 284 (306)
+++++|+||+.+- =++++.+++|+|++||||.++..+. -++.+|+.||..+ ..+-.=|-..+|.... +
T Consensus 156 ~~v~plkpL~~~f-gpi~~~~v~t~QAiSGAG~apgv~~--vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ 232 (361)
T KOG4777|consen 156 ICVMPLKPLHHHF-GPIKRMVVSTYQAISGAGAAPGVEL--VDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLN 232 (361)
T ss_pred eEEeechhHHhhc-cchhhhhhhhhhhhccCCcCCCchH--HHHHHhhcCCCCccchhhhHHHHHhhhccCCcccccccc
Confidence 9999999999862 1457889999999999999887763 6889999999997 4554555555564321 1
Q ss_pred CcceEEEEeeeeccccccccc
Q 021865 285 SKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 285 ~~~~v~FtphlvP~~RGil~~ 305 (306)
.+..++..+.++|++.|++.|
T Consensus 233 ee~~vsaqcnRv~v~Dgh~~c 253 (361)
T KOG4777|consen 233 EEEMVSAQCNRVIVNDGHVKC 253 (361)
T ss_pred HHHhhhhhcceeeEecCceEE
Confidence 345578899999999999988
No 21
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.96 E-value=7.8e-30 Score=210.97 Aligned_cols=119 Identities=41% Similarity=0.777 Sum_probs=100.6
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEecccc-CCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~-aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
||+|+|||||+|++|+++|++||++++..+.+++. +|+++.+.+|.+.......+++.+.+++.++|+||+|+|++.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 79999999999999999999999999999888777 99999999986554322234444455668999999999999999
Q ss_pred HHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCC
Q 021865 144 EIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA 202 (306)
Q Consensus 144 ~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a 202 (306)
++++++ ++|++|||+|+|||+++ +++||+||+||++|+++
T Consensus 81 ~~~~~~~~~g~~ViD~s~~~R~~~-------------------~~~~~~pevn~~~i~~a 121 (121)
T PF01118_consen 81 ELAPKLLKAGIKVIDLSGDFRLDD-------------------DVPYGLPEVNREQIKKA 121 (121)
T ss_dssp HHHHHHHHTTSEEEESSSTTTTST-------------------TSEEE-HHHHHHHHHCH
T ss_pred HHHHHHhhCCcEEEeCCHHHhCCC-------------------CCCEEeCCcCHHHHccC
Confidence 999887 88999999999999987 34899999999998763
No 22
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=99.82 E-value=2.9e-19 Score=172.13 Aligned_cols=212 Identities=13% Similarity=0.123 Sum_probs=144.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcC---CCceEEEE---------------ecc--------ccCCcccccccCCcccCCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANH---PYFGIKLM---------------TAD--------RKAGQSIGSVFPHLISQDL 116 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~H---P~~el~~l---------------~S~--------~~aGk~l~~~~p~l~~~~~ 116 (306)
|+||||.|+ |-+|++++|.|.+. ++++++.+ .|. +..|+.+. +.+...
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~-----v~g~~i 74 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLF-----VGDDAI 74 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEE-----ECCEEE
Confidence 579999999 99999999998853 35665533 221 22232222 111122
Q ss_pred cccc--ccCcccC--CCCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcc
Q 021865 117 PTMV--AVKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGL 191 (306)
Q Consensus 117 ~~~~--~~~~~~~--~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGL 191 (306)
.... ++++..| .++|+||.|++...+.++++. +++|+++||+|+.+|++++ . ..+|++|.+.. .
T Consensus 75 ~v~~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~--------~-~vV~gVN~~~~-~- 143 (336)
T PRK13535 75 RLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD--------A-TVVYGVNHDQL-R- 143 (336)
T ss_pred EEEEcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCC--------C-eEEeCcCHHHh-C-
Confidence 1111 2223345 589999999999999999875 5899999999999998642 2 57888887743 1
Q ss_pred cccchhcccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeecCCCCCc
Q 021865 192 TEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRH 271 (306)
Q Consensus 192 pEl~r~~i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~~~~HrH 271 (306)
...++||||+|.+.+++.+|+||.++ ++++++.++|++++| +|++++++.+-.-+..-.-++++.-+
T Consensus 144 --------~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~mTT~ha~t-~~Q~~vD~~~~d~rr~r~~a~NiIP~-- 210 (336)
T PRK13535 144 --------AEHRIVSNASCTTNCIIPVIKLLDDA--FGIESGTVTTIHSAM-NDQQVIDAYHPDLRRTRAASQSIIPV-- 210 (336)
T ss_pred --------cCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEhhc-CCcchhhchhhccccccEeeeccccC--
Confidence 12579999999999999999999987 577899999999999 89999887542212122233443322
Q ss_pred hhHHHHHhhcccC-CcceEEEEeeeecccccccc
Q 021865 272 VPEIEQGLTGFAS-SKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 272 ~pEI~q~L~~~~~-~~~~v~FtphlvP~~RGil~ 304 (306)
..-+.++++++.+ -+.+++.|..+||+.+|.+.
T Consensus 211 ~tgaa~a~~kilP~l~gkv~~~avRVPv~~gs~~ 244 (336)
T PRK13535 211 DTKLAAGITRIFPQFNDRFEAISVRVPTINVTAI 244 (336)
T ss_pred ccHHHhhhhhcccCCCCcEEEEEEEeCccCcEEE
Confidence 1133334433322 12349999999999999763
No 23
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.81 E-value=8.1e-19 Score=169.43 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=147.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC---------CcccccccCC----cccCCCccccccCcccCCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---------GQSIGSVFPH----LISQDLPTMVAVKDADFSN 129 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a---------Gk~l~~~~p~----l~~~~~~~~~~~~~~~~~~ 129 (306)
|+||+|+|+ |.+|+.+++.+.++|+++++.+..+... |-.+...+|. +....+. +....++.+.+
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~-V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIP-VAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceE-EcCChhHhhcc
Confidence 689999999 9999999999999999999998763321 1111000111 0001111 11111222367
Q ss_pred CCEEEecCCccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecC
Q 021865 130 VDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANP 208 (306)
Q Consensus 130 ~DvVF~alp~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnP 208 (306)
+|+||.|+|...+.++++.. ++|++|||.++.++..+ +++. +|++|.+.. .+.++|+||
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~--------~~~~-v~~vN~~~~-----------~~~~~v~~~ 138 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVA--------GVSF-NALANYEEA-----------LGKDYVRVV 138 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCC--------CCcE-EeeECHHHh-----------CCCCcEEcc
Confidence 99999999999999998765 78999999999877543 2344 677776533 334589999
Q ss_pred CChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceeec--CCCCCchhHHHHHhhcccCCc
Q 021865 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYG--VTRHRHVPEIEQGLTGFASSK 286 (306)
Q Consensus 209 GCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y~--~~~HrH~pEI~q~L~~~~~~~ 286 (306)
+|.+|++..+|+||.++ ++++++.++|++.+|+. . ++ .....+|+.|+. +..|. -+++...| .+
T Consensus 139 sCtT~~l~~~l~~L~~~--fgI~~~~vTtv~a~td~----~-~~-~r~~~~niip~p~~~~~~~-g~~v~~vl-----p~ 204 (341)
T PRK04207 139 SCNTTGLCRTLCALDRA--FGVKKVRATLVRRAADP----K-EV-KRGPINAIVPDPVTVPSHH-GPDVKTVL-----PD 204 (341)
T ss_pred ChHHHHHHHHHHHHHHh--cCceEEEEEEEEcCCCc----c-hh-hHHHhcCcCCCCCCCCCCc-hhHHHhhC-----CC
Confidence 99999999999999986 46789999999998852 1 11 255678999884 22343 57877777 34
Q ss_pred ceEEEEeeeeccccccccc
Q 021865 287 VTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 287 ~~v~FtphlvP~~RGil~~ 305 (306)
++|+.+..+||+..|++.+
T Consensus 205 l~i~~~avrVPv~~gh~~~ 223 (341)
T PRK04207 205 LDITTMAVKVPTTLMHMHS 223 (341)
T ss_pred CceEEEEEEcCCCCceEEE
Confidence 5699999999999999864
No 24
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.79 E-value=5.8e-20 Score=162.83 Aligned_cols=86 Identities=38% Similarity=0.479 Sum_probs=75.9
Q ss_pred hhHHHhccCCCCceEEEEeeeecCccCcc-----------------ccccccHHHHhcCceeecCC-CCCchhHHHHHhh
Q 021865 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRG-----------------AKEANLYSEIAEGIYSYGVT-RHRHVPEIEQGLT 280 (306)
Q Consensus 219 L~PL~~~~li~~~~iiV~a~sgvSGAGr~-----------------~~~~~~~~e~~~n~~~Y~~~-~HrH~pEI~q~L~ 280 (306)
|+||+++ ++++++|+|+|+||+||||++ +....++.++++|+.||+.+ .|||+|||+|+|+
T Consensus 1 L~PL~~~-l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~ 79 (184)
T PF02774_consen 1 LAPLHKA-LFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELK 79 (184)
T ss_dssp HHHHHHT-HHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHH
T ss_pred CcchhhC-cCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHH
Confidence 7899998 667789999999999999999 77888999999999999999 9999999999987
Q ss_pred ccc------CCcceEEEEeeeeccccccccc
Q 021865 281 GFA------SSKVTVSFTPHLMPMVTVSLRC 305 (306)
Q Consensus 281 ~~~------~~~~~v~FtphlvP~~RGil~~ 305 (306)
.+. +....|+||||++||+|||+.+
T Consensus 80 ~~~~~~~~l~~~~~v~~t~~~vPv~rG~~~t 110 (184)
T PF02774_consen 80 MIAETRKILGFPPRVSFTCVRVPVFRGHLAT 110 (184)
T ss_dssp HHHHHHHHCTETTEEEEEEEEESSSSEEEEE
T ss_pred hhccccceeeccccccccEEEEeeeeeEcee
Confidence 642 1122899999999999999875
No 25
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=99.77 E-value=3.1e-18 Score=164.56 Aligned_cols=210 Identities=15% Similarity=0.135 Sum_probs=145.3
Q ss_pred EEEEEccccHHHHHHHHHHhcC---CCceEEEEeccccCC---c--ccccccCCc-------------ccCCCccc--cc
Q 021865 65 RIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAG---Q--SIGSVFPHL-------------ISQDLPTM--VA 121 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~H---P~~el~~l~S~~~aG---k--~l~~~~p~l-------------~~~~~~~~--~~ 121 (306)
||||.|+ |-+|+.++|.|.+. ++++++.+-.-.... . +....|..+ .+.....+ .+
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 6999999 99999999998865 468887764211110 0 011112111 01111111 12
Q ss_pred cCcccC--CCCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhc
Q 021865 122 VKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (306)
Q Consensus 122 ~~~~~~--~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~ 198 (306)
+++..| .++|+||.|+|...+.++++. +++|+++||+|+.+|+++ +. ..+|++|.+..-
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~--------~~-~vV~gVN~~~~~--------- 141 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDL--------DA-TIVYGVNQQDLS--------- 141 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCC--------Cc-eEEeccCHHHhC---------
Confidence 223334 589999999999999998865 589999999999999853 13 577888876431
Q ss_pred ccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHH------hcCceeecCCCCCch
Q 021865 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEI------AEGIYSYGVTRHRHV 272 (306)
Q Consensus 199 i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~------~~n~~~Y~~~~HrH~ 272 (306)
...++|+||+|.+++++.+|+||.++ ++++++.++|++++|+ |++++++.+ .+. ..|+.|..-+.+
T Consensus 142 -~~~~IISnasCtTn~lap~lk~L~~~--fgI~~~~~tTvha~t~-~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a--- 213 (325)
T TIGR01532 142 -AEHTIVSNASCTTNCIVPLIKLLDDA--IGIESGTITTIHSAMN-DQQVIDAYH-HDLRRTRAASQSIIPVDTKLA--- 213 (325)
T ss_pred -CCCCEEeCCCcHHHHHHHHHHHHHHh--cCeeEEEEEEEEhhcC-Cccccccch-hhccccchHhhCeeeCCccHH---
Confidence 12579999999999999999999987 4678999999999999 999988754 332 237777643333
Q ss_pred hHHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 273 PEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 273 pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
-|+.+.|-.+. .+|+.+..+||+.+|.+.
T Consensus 214 ~a~~kilP~L~---gkl~~~avRVPv~~~s~~ 242 (325)
T TIGR01532 214 RGIERLFPEFA---GRFEAIAVRVPTVNVTAL 242 (325)
T ss_pred HHHHHhCcccC---CeEEEEEEEecccCcEEE
Confidence 34444453332 349999999999999864
No 26
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.73 E-value=1.2e-17 Score=158.67 Aligned_cols=164 Identities=16% Similarity=0.276 Sum_probs=122.8
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc--CCcccccccCCcccCCCccccc-cCcccCCCCCEEEecC
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCL 137 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~--aGk~l~~~~p~l~~~~~~~~~~-~~~~~~~~~DvVF~al 137 (306)
++++||+||| +|.+|..++..|.+.|+++++.+.+... .|....+.+- +.. ....++. ++..+|.++|+||+|+
T Consensus 2 m~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~G-i~~-~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 2 MSKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLG-VAT-SAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcC-CCc-ccCCHHHHHhCcCCCCCCEEEECC
Confidence 4568999999 9999999999888899999999886533 2322222111 100 0011111 2233456899999999
Q ss_pred CccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHh
Q 021865 138 PHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQ 216 (306)
Q Consensus 138 p~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~ 216 (306)
|+....++++.+ ++|+.|||+++.|+ .|+++|++|.+...+ ..+.++|+||||.++.+.
T Consensus 79 ~a~~H~e~a~~a~eaGk~VID~sPA~~------------~PlvVP~VN~~~~~~--------~~~~~iia~p~~ati~~v 138 (302)
T PRK08300 79 SAGAHVRHAAKLREAGIRAIDLTPAAI------------GPYCVPAVNLDEHLD--------APNVNMVTCGGQATIPIV 138 (302)
T ss_pred CHHHHHHHHHHHHHcCCeEEECCcccc------------CCcccCcCCHHHHhc--------ccCCCEEECccHHHHHHH
Confidence 999999999876 88999999999994 589999999886632 235689999999999999
Q ss_pred hhhhHHHhccCCCCceEEEEeeeecC-ccC-cccccc
Q 021865 217 LPLVPLIQANLIQYRNIIIDAKSGVS-GAG-RGAKEA 251 (306)
Q Consensus 217 LaL~PL~~~~li~~~~iiV~a~sgvS-GAG-r~~~~~ 251 (306)
++|.|+.+. +..+|+ .|++..| |.| |+..++
T Consensus 139 ~Al~~v~~~---~~~eIv-at~~s~s~g~gtr~nidE 171 (302)
T PRK08300 139 AAVSRVAPV---HYAEIV-ASIASKSAGPGTRANIDE 171 (302)
T ss_pred HHhcccCcC---ceeeee-eeehhhccCCcccccHHH
Confidence 999995432 344665 8899999 999 777776
No 27
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.73 E-value=7e-17 Score=155.65 Aligned_cols=215 Identities=13% Similarity=0.170 Sum_probs=149.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccc-cCCc-----ccccccCCcc-------------cCCCccc--cc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAGQ-----SIGSVFPHLI-------------SQDLPTM--VA 121 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~-~aGk-----~l~~~~p~l~-------------~~~~~~~--~~ 121 (306)
++||+|.|. |=+|+.++|.+.++++++++.+.... .... ++...|..+. +...... .+
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 489999999 99999999999989999988775311 1100 1112232221 1111111 12
Q ss_pred cCcccCCCCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhccc
Q 021865 122 VKDADFSNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK 200 (306)
Q Consensus 122 ~~~~~~~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~ 200 (306)
+++.+|.++|+||+|++...++++++. +++|+++||+|+. |.++ ++|..+|++|.+.. . . .
T Consensus 81 ~~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap-~~d~--------d~p~vV~gVN~~~~-~-------~-~ 142 (334)
T PRK08955 81 IADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP-VKEE--------GVLNIVMGVNDHLF-D-------P-A 142 (334)
T ss_pred hhhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC-CCCC--------CCceEecccCHHHh-c-------c-c
Confidence 334456799999999999999999876 4899999999999 8874 46889999998743 1 0 1
Q ss_pred CCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCcccc---cccc-HHHHhcCceeecCCCCCchhHHH
Q 021865 201 NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAK---EANL-YSEIAEGIYSYGVTRHRHVPEIE 276 (306)
Q Consensus 201 ~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~---~~~~-~~e~~~n~~~Y~~~~HrH~pEI~ 276 (306)
..++||||+|.+++++.+|+||.++ ++++++.++|++++|.--+-.. .+.. -...+-|+.|-.-+. ..|+.
T Consensus 143 ~~~IISnasCtTn~Lap~lk~L~~~--fgI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tGa---a~a~~ 217 (334)
T PRK08955 143 IHPIVTAASCTTNCLAPVVKVIHEK--LGIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGS---ATAIT 217 (334)
T ss_pred CCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEEeccCccccccCCCcccccchhheeccccccCCC---ccccc
Confidence 2579999999999999999999987 5778999999999994322100 0011 134556666655222 35665
Q ss_pred HHhhcccCCcceEEEEeeeecccccccc
Q 021865 277 QGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 277 q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
+.|-.+.+ +++.+..+||+.+|.+.
T Consensus 218 kvlP~L~g---kl~~~avRVPv~~gs~~ 242 (334)
T PRK08955 218 EIFPELKG---KLNGHAVRVPLANASLT 242 (334)
T ss_pred eEccccCC---cEEEEEEEeccCCeEEE
Confidence 55543333 38999999999999763
No 28
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=99.73 E-value=9.2e-17 Score=157.42 Aligned_cols=208 Identities=13% Similarity=0.141 Sum_probs=145.8
Q ss_pred CccEEEEEccccHHHHHHHHHHhcC--CCceEEEE---------------ecc---------ccCCcccccccCCcccCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLM---------------TAD---------RKAGQSIGSVFPHLISQD 115 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~H--P~~el~~l---------------~S~---------~~aGk~l~~~~p~l~~~~ 115 (306)
+++||||.|+ |-+|+.++|+|.+. |.++++.+ .|. ...|+.+. +.+..
T Consensus 59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~-----v~gk~ 132 (395)
T PLN03096 59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAIS-----VDGKV 132 (395)
T ss_pred cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEE-----ECCEE
Confidence 3379999999 99999999998854 78898833 221 11222221 11111
Q ss_pred Ccccc--ccCcccC--CCCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhc
Q 021865 116 LPTMV--AVKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYG 190 (306)
Q Consensus 116 ~~~~~--~~~~~~~--~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYG 190 (306)
..... ++++.+| .++|+||.|++...+.+.++. +++|+++||+|+. .++ +.|..+|++|.+. |.
T Consensus 133 I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap--~~~--------~~ptvV~GVN~~~-l~ 201 (395)
T PLN03096 133 IKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP--GKG--------DIPTYVVGVNADD-YK 201 (395)
T ss_pred EEEEEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC--CCC--------CCCeEeCccCHHH-hc
Confidence 11111 1223344 489999999999999998865 5899999999998 444 3678889998873 32
Q ss_pred ccccchhcccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCcccccccc-----HHHHhcCceeec
Q 021865 191 LTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSYG 265 (306)
Q Consensus 191 LpEl~r~~i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~-----~~e~~~n~~~Y~ 265 (306)
...++|+||.|.+.+++..++||.++ +++++..++|+.++|+.=+ ..+..| -...+-|+.|..
T Consensus 202 ---------~~~~IISnaSCTTn~LAp~lkvL~~~--fGI~~g~mTTiHa~T~~Q~-llD~~~~d~rr~Raaa~NiIPts 269 (395)
T PLN03096 202 ---------HSDPIISNASCTTNCLAPFVKVLDQK--FGIIKGTMTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTS 269 (395)
T ss_pred ---------cCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEccccccc-cccCCCCccccchhhhccccccC
Confidence 12579999999999999999999987 5778899999999999832 222111 134567777777
Q ss_pred CCCCCchhHHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 266 VTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 266 ~~~HrH~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
-+..+ |+.+.|-.+.+ +|+.+..+||+..|.+.
T Consensus 270 TGaak---av~kVlP~L~g---kl~g~avRVPv~~gs~~ 302 (395)
T PLN03096 270 TGAAK---AVALVLPNLKG---KLNGIALRVPTPNVSVV 302 (395)
T ss_pred CCcch---hhhhcccccCC---cEEEEEEEccccceEEE
Confidence 44333 66666644433 38999999999999753
No 29
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.71 E-value=2.8e-16 Score=151.67 Aligned_cols=211 Identities=13% Similarity=0.140 Sum_probs=148.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcc------cccccCCccc---------------CCCccccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS------IGSVFPHLIS---------------QDLPTMVA 121 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~------l~~~~p~l~~---------------~~~~~~~~ 121 (306)
++||||+| .|.+|+..+|.+.++|+++++.+......-+. +...|..+.+ ..+.....
T Consensus 5 ~lrVaI~G-~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGING-FGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEe-ecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence 58999999 79999999999998999999988642211111 1123333321 01111111
Q ss_pred --cCcccC--CCCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccch
Q 021865 122 --VKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (306)
Q Consensus 122 --~~~~~~--~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r 196 (306)
.++..| .++|+||.|++...++++++. +++|+++||+|+- .+ ++|.++|++|.+.. .
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap---~~--------dvp~iV~gVN~~~~-~------ 145 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAP---SK--------DAPMFVVGVNEHEY-K------ 145 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCC---CC--------CCCeEecCcCHHHh-C------
Confidence 112234 589999999999999998875 5899999999943 22 36788899988743 1
Q ss_pred hcccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCcccccccc------HHHHhcCceeecCCCCC
Q 021865 197 EDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTRHR 270 (306)
Q Consensus 197 ~~i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~------~~e~~~n~~~Y~~~~Hr 270 (306)
...++|+||+|.+++++.+|+||.++ ++++++.++|++++||+++-. +..+ -...+.|+.|..-+
T Consensus 146 ---~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~mTTiha~T~~q~l~-d~~~~~d~r~~ra~a~NiIP~~tG--- 216 (338)
T PLN02358 146 ---SDLDIVSNASCTTNCLAPLAKVINDR--FGIVEGLMTTVHSITATQKTV-DGPSMKDWRGGRAASFNIIPSSTG--- 216 (338)
T ss_pred ---CCCCEEECCCchHHHHHHHHHHHHHh--cCeeEEEEEEEEeecCccccc-CCCCCccccCccccccccccCCcc---
Confidence 12579999999999999999999986 577899999999999998632 2211 13456777777632
Q ss_pred chhHHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 271 HVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 271 H~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
...|+.+.|-.+. .+++.+..+||+..|.+.
T Consensus 217 aaka~~kIlP~l~---gkl~g~avRVPv~~gs~~ 247 (338)
T PLN02358 217 AAKAVGKVLPSLN---GKLTGMSFRVPTVDVSVV 247 (338)
T ss_pred hhhhhhhccccCC---CcEEEEEEEeeEcCeeEE
Confidence 2456666664333 359999999999999764
No 30
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=99.67 E-value=1.9e-15 Score=145.49 Aligned_cols=211 Identities=12% Similarity=0.133 Sum_probs=149.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCc-----ccccccCCccc-------------CCCcccc--cc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-----SIGSVFPHLIS-------------QDLPTMV--AV 122 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk-----~l~~~~p~l~~-------------~~~~~~~--~~ 122 (306)
++||+|=| -|=+|+.++|.+..+++++++.+-....... ++...|..+.. ....... ++
T Consensus 2 ~~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (331)
T PRK15425 2 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 80 (331)
T ss_pred ceEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCCh
Confidence 37999988 8999999999988789999988742111100 11223333321 1111111 22
Q ss_pred CcccCC--CCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcc
Q 021865 123 KDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (306)
Q Consensus 123 ~~~~~~--~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i 199 (306)
++..|. ++|+||+|++...+.+.+++ +++|+++||+|+. .++ ++|..+|++|.+..
T Consensus 81 ~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap--~~~--------~vp~vV~gVN~~~~----------- 139 (331)
T PRK15425 81 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP--SKD--------NTPMFVKGANFDKY----------- 139 (331)
T ss_pred hhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC--CCC--------CCCEEEcccCHHHc-----------
Confidence 233455 89999999999999998875 5889999999998 554 36778888887632
Q ss_pred cCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCcccccccc------HHHHhcCceeecCCCCCchh
Q 021865 200 KNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTRHRHVP 273 (306)
Q Consensus 200 ~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~------~~e~~~n~~~Y~~~~HrH~p 273 (306)
.+.++|+||.|.+++++.+|+||.++ +++++..++|++++|+. +...+..+ ....+.|+.|.. +-+..
T Consensus 140 ~~~~IISnaSCtTn~Lapvlk~L~~~--fgI~~g~mTTvha~T~~-q~llD~~~~~d~r~~R~aa~NiIPt~---tGaa~ 213 (331)
T PRK15425 140 AGQDIVSNASCTTNCLAPLAKVINDN--FGIIEGLMTTVHATTAT-QKTVDGPSHKDWRGGRGASQNIIPSS---TGAAK 213 (331)
T ss_pred CCCCEEECCCcHHHHHHHHHHHHHHh--CCeEEEEEEEEEeccCc-cccccCCCCcccccCcchhhceeccc---CCchH
Confidence 22479999999999999999999987 57789999999999999 65443221 124556666655 34458
Q ss_pred HHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 274 EIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 274 EI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
|+.+.|-.+.| +++.+..+||+..|.+.
T Consensus 214 av~kIlP~L~g---kl~g~avRVPv~~gs~~ 241 (331)
T PRK15425 214 AVGKVLPELNG---KLTGMAFRVPTPNVSVV 241 (331)
T ss_pred HHHhhccccCC---eEEEEEEEecccCeEEE
Confidence 88888855444 38999999999999764
No 31
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.66 E-value=4.1e-16 Score=128.36 Aligned_cols=114 Identities=39% Similarity=0.747 Sum_probs=88.4
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEe-ccccCCcccccccCCcccCCCccccccCcccC--CCCCEEEecCCccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHGT 141 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~-S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~--~~~DvVF~alp~~~ 141 (306)
|++|+|++|++|..+++.|.++|++++..+. ++++.|+.+.+.++++.......+ +.+.+ .++|+||+|+|++.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~DvV~~~~~~~~ 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLEL---EPEDFEELAVDIVFLALPHGV 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCccccccccccc---ccCChhhcCCCEEEEcCCcHH
Confidence 6899999999999999999999999998884 456788888888876543211111 11222 47999999999998
Q ss_pred hHHHHH----hcCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhccc
Q 021865 142 TQEIIK----GLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK 200 (306)
Q Consensus 142 s~~~~~----~l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~ 200 (306)
..+.+. .+..|+.|||+|+++|+++ +.+|++||+|+++++
T Consensus 78 ~~~~~~~~~~~~~~g~~viD~s~~~~~~~-------------------~~~~~~~~~n~~~~~ 121 (122)
T smart00859 78 SKEIAPLLPKAAEAGVKVIDLSSAFRMDD-------------------DVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHHhhhcCCCEEEECCccccCCC-------------------CceEEcCccCHHHhc
Confidence 888543 2467999999999999976 237899999988765
No 32
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=99.63 E-value=7.5e-15 Score=141.25 Aligned_cols=211 Identities=18% Similarity=0.177 Sum_probs=144.7
Q ss_pred EEEEEccccHHHHHHHHHHhcC--CCceEEEEeccccCCc-----ccccccCCcc--------------cC-CCcccc--
Q 021865 65 RIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQ-----SIGSVFPHLI--------------SQ-DLPTMV-- 120 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~H--P~~el~~l~S~~~aGk-----~l~~~~p~l~--------------~~-~~~~~~-- 120 (306)
||+|=| -|=+|+.++|.+... ++++++.+-....... +....|..+. +. ......
T Consensus 1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 578877 799999999998766 4788876632100000 1112222221 11 111010
Q ss_pred ccCcccCC--CCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchh
Q 021865 121 AVKDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (306)
Q Consensus 121 ~~~~~~~~--~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~ 197 (306)
++++..|. ++|+||.|++...+.+.++. +++|+++||+|+. |.++ +|..+|++|.+.. .
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap-~~d~---------~plvV~gVN~~~~-~------- 141 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP-SKGD---------APTIVYGVNHDEY-D------- 141 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC-CCCC---------CCeecCCCCHHHh-C-------
Confidence 22233455 89999999999999998875 5889999999998 7653 5889999998743 1
Q ss_pred cccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCcccc---ccccH-HHHhcCceeecCCCCCchh
Q 021865 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAK---EANLY-SEIAEGIYSYGVTRHRHVP 273 (306)
Q Consensus 198 ~i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~---~~~~~-~e~~~n~~~Y~~~~HrH~p 273 (306)
...++|+||+|.+++++.+|+||.++ ++++++.++|++++||.++-.. .+..+ .....|+.|+. ++ +..
T Consensus 142 --~~~~IISn~sCtTn~Lap~lk~L~~~--fgI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~-tg--~ak 214 (327)
T TIGR01534 142 --PEERIISNASCTTNCLAPLAKVLDEA--FGIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTS-TG--AAK 214 (327)
T ss_pred --CCCCEEecCCchHHHHHHHHHHHHHh--cCeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccC-CC--hHH
Confidence 12469999999999999999999986 4778999999999999864211 11111 23567788877 22 456
Q ss_pred HHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 274 EIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 274 EI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
|+.+.|-.+. .+|+-+..+||+.+|.+.
T Consensus 215 ~~~kvlP~L~---gkv~~~avRVPv~~gs~~ 242 (327)
T TIGR01534 215 AIGKVLPELA---GKLTGMAIRVPTPNVSLV 242 (327)
T ss_pred HHhhccccCC---CeEEEEEEEecccCeEEE
Confidence 7766664332 349999999999999875
No 33
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.62 E-value=8.9e-15 Score=141.14 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=145.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccc-cCCc-----ccccccCCccc-------------CCCccccccC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAGQ-----SIGSVFPHLIS-------------QDLPTMVAVK 123 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~-~aGk-----~l~~~~p~l~~-------------~~~~~~~~~~ 123 (306)
++||||=| -|=+|+.++|.+...++++++.+-... .... ++...|..+.. .....+..-+
T Consensus 2 ~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~d 80 (337)
T PTZ00023 2 VVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKD 80 (337)
T ss_pred ceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCC
Confidence 47999988 899999999998877889988873211 1100 11223333321 0000111111
Q ss_pred ccc--C--CCCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhc
Q 021865 124 DAD--F--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (306)
Q Consensus 124 ~~~--~--~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~ 198 (306)
+.+ | .++|+||+|++...++++++. +++|+++||+|+ ++++ ++|..+|++|.+...
T Consensus 81 p~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSa--p~~~--------~vp~vV~gVN~~~~~--------- 141 (337)
T PTZ00023 81 PAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSA--PPKD--------DTPIYVMGVNHTQYD--------- 141 (337)
T ss_pred hhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCC--CCCC--------CCCeEEcccCHHHhC---------
Confidence 222 2 379999999999999999876 488999999999 5664 468889999987431
Q ss_pred ccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccc-------cH-HHHhcCceeecCCCCC
Q 021865 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEAN-------LY-SEIAEGIYSYGVTRHR 270 (306)
Q Consensus 199 i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~-------~~-~e~~~n~~~Y~~~~Hr 270 (306)
...++|+||+|.+.+++.+|+||.++ ++++++.++|++++|.--. ..+.. -+ ...+.|+.|..-+.
T Consensus 142 -~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~~TT~ha~T~~Q~-lld~~~~~~kd~r~~r~~a~NiIP~~tGa-- 215 (337)
T PTZ00023 142 -KSQRIVSNASCTTNCLAPLAKVVNDK--FGIVEGLMTTVHASTANQL-TVDGPSKGGKDWRAGRCAGVNIIPASTGA-- 215 (337)
T ss_pred -CCCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEEecCCCce-ecCCcCcccCCCcccceeeccccccCCCc--
Confidence 12579999999999999999999987 5778999999999994221 11110 11 24567777776332
Q ss_pred chhHHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 271 HVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 271 H~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
.-|+.+.|-.+. .+|+-+..+||+..|.+.
T Consensus 216 -akav~kVlPeL~---gkl~g~avRVPt~~~s~~ 245 (337)
T PTZ00023 216 -AKAVGKVIPELN---GKLTGMAFRVPVPDVSVV 245 (337)
T ss_pred -chhhhheecccC---CcEEEEEEEecccCeEEE
Confidence 336666664432 349999999999999764
No 34
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.59 E-value=2.9e-14 Score=137.58 Aligned_cols=214 Identities=11% Similarity=0.133 Sum_probs=146.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcC--CCceEEEEeccccCCc-----ccccccCCccc-------------CCCcccccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQ-----SIGSVFPHLIS-------------QDLPTMVAV 122 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~H--P~~el~~l~S~~~aGk-----~l~~~~p~l~~-------------~~~~~~~~~ 122 (306)
|+||+|=| -|=+|+.++|.+... ++++++.+-....... ++...|..+.. .....+...
T Consensus 1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 68999988 899999999997765 6788887742111100 11123333311 111111112
Q ss_pred C--cccCC--CCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchh
Q 021865 123 K--DADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (306)
Q Consensus 123 ~--~~~~~--~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~ 197 (306)
+ +..|. ++|+||.|++...+.+.++. +++|+++||+|+ ++.++ +.|..+|++|.+. |.
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSa-p~~d~--------d~p~vV~gVN~~~-~~------- 142 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITA-PGKGE--------DIGTYVVGVNHHE-YD------- 142 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCC-CCCCC--------CCceEecccCHHH-hc-------
Confidence 2 22344 89999999999999998875 588999999999 57653 3688889988773 21
Q ss_pred cccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccH-----HHHhcCceeecCCCCCch
Q 021865 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRHRHV 272 (306)
Q Consensus 198 ~i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~-----~e~~~n~~~Y~~~~HrH~ 272 (306)
. ...++|+||.|.+.+++.+|+||.++ +++++..++|++++|+.+ +..+..|- ...+.|+.|..-+..+
T Consensus 143 ~-~~~~IISnasCTTn~Lap~lkvL~~~--fgI~~~~mTTiha~T~~q-~~~D~~~~d~r~~raaa~NiIPt~tGaak-- 216 (337)
T PRK07403 143 H-EDHNIISNASCTTNCLAPIAKVLHDN--FGIIKGTMTTTHSYTGDQ-RILDASHRDLRRARAAAVNIVPTSTGAAK-- 216 (337)
T ss_pred c-CCCCEEECCcHHHHHHHHHHHHHHHh--cCeeEEEEEEEeeecCCc-ccccccccccccccccccccccCCcchhh--
Confidence 0 13579999999999999999999987 577899999999999999 44444331 1345566666654332
Q ss_pred hHHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 273 PEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 273 pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
++.+.|-.+.| +|+-+..+||+..|.+.
T Consensus 217 -av~~vlP~L~g---ki~g~avRVPt~~vs~~ 244 (337)
T PRK07403 217 -AVALVIPELKG---KLNGIALRVPTPNVSVV 244 (337)
T ss_pred -hhhhcCcccCC---cEEEEEEEeccCCcEEE
Confidence 33344433333 48888999999988764
No 35
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.55 E-value=7.4e-14 Score=137.89 Aligned_cols=209 Identities=11% Similarity=0.135 Sum_probs=141.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcc------cccccCCccc--------------CCCccc--c
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS------IGSVFPHLIS--------------QDLPTM--V 120 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~------l~~~~p~l~~--------------~~~~~~--~ 120 (306)
|+||+|.| -|=+|+.++|.+...++++++.+-......+. +...|..+.+ ...... .
T Consensus 85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 57999999 79999999999876678888876431111111 1123332221 011001 1
Q ss_pred ccCcccCC--CCCEEEecCCccchHHHHHh-cCCCC--eEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccc
Q 021865 121 AVKDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS 195 (306)
Q Consensus 121 ~~~~~~~~--~~DvVF~alp~~~s~~~~~~-l~~g~--~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~ 195 (306)
++++..|. ++|+||+|++...+.+.+++ +++|+ +|||++. + ++|.++|++|.+.. .
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~-----~--------dvPlvV~gVN~~~l-~----- 224 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS-----A--------DAPMFVVGVNEKTY-K----- 224 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC-----C--------CCCeEEeccCHHHh-C-----
Confidence 22233454 79999999999999988865 57777 9999982 1 36788899988742 1
Q ss_pred hhcccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccH------HHHhcCceeecCCCC
Q 021865 196 REDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEIAEGIYSYGVTRH 269 (306)
Q Consensus 196 r~~i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~------~e~~~n~~~Y~~~~H 269 (306)
...++|+||+|.+++++..|+||.++ ++++++.++|++++||. ++..+..++ ...+.|+.|.. +
T Consensus 225 ----~~~~IISnaSCTTn~Lap~lk~L~~~--fGI~~g~mTTvha~T~t-Q~llD~~~~~d~r~~R~aa~NIIPt~---t 294 (421)
T PLN02272 225 ----PNMNIVSNASCTTNCLAPLAKVVHEE--FGILEGLMTTVHATTAT-QKTVDGPSMKDWRGGRGASQNIIPSS---T 294 (421)
T ss_pred ----CCCCeeeCCCcHHHHHHHHHHHHHHh--CCeEEEEEEEEEeccCc-cccccCccccccccCCCcccccccCC---C
Confidence 12479999999999999999999987 47789999999999995 332222111 23444555444 3
Q ss_pred CchhHHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 270 RHVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 270 rH~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
-+..|+.+.|-.+.| +|+.+..+||+.+|.+.
T Consensus 295 Gaakav~kVLP~L~g---kl~gtaVRVPv~~gs~~ 326 (421)
T PLN02272 295 GAAKAVGKVLPELNG---KLTGMAFRVPTPNVSVV 326 (421)
T ss_pred ccchhhhhcccccCC---cEEEEEEEeccCceEEE
Confidence 334577777744433 38999999999999764
No 36
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.52 E-value=4.7e-13 Score=129.44 Aligned_cols=212 Identities=12% Similarity=0.132 Sum_probs=141.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCc-----ccccccCCcc-------------cCCCcccc--cc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-----SIGSVFPHLI-------------SQDLPTMV--AV 122 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk-----~l~~~~p~l~-------------~~~~~~~~--~~ 122 (306)
++||+|=| -|=+|+.++|.+...++++++.+-....... ++...|..+. +.....+. +.
T Consensus 2 ~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (343)
T PRK07729 2 KTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDP 80 (343)
T ss_pred ceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCh
Confidence 37999988 6999999999988778999888742111000 1112333221 01111111 12
Q ss_pred CcccC--CCCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcc
Q 021865 123 KDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (306)
Q Consensus 123 ~~~~~--~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i 199 (306)
++.+| .++|+||+|++...+.++++. +++|+++||+|+ +|.++ +.|. ++++|.+. |. .
T Consensus 81 ~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSa-p~~d~--------d~~l-V~gVN~~~-~~-------~- 141 (343)
T PRK07729 81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTA-PGKNE--------DVTI-VVGVNEDQ-LD-------I- 141 (343)
T ss_pred hhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCC-CCCCC--------CCcE-EecccHHH-hc-------c-
Confidence 23334 479999999999999998875 588999999995 47764 2454 66777663 21 0
Q ss_pred cCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHH------HhcCceeecCCCCCchh
Q 021865 200 KNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSE------IAEGIYSYGVTRHRHVP 273 (306)
Q Consensus 200 ~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e------~~~n~~~Y~~~~HrH~p 273 (306)
...++|+||.|.+++++++|+||.++ ++++++.++|++++||. .+..++.+ .+ ...|+.|-.-+ +..
T Consensus 142 ~~~~IISnaSCTTn~Lap~lk~L~~~--fgI~~~~mTTiha~T~~-Q~~~D~~~-~d~rr~R~a~~niiPtstg---aa~ 214 (343)
T PRK07729 142 EKHTIISNASCTTNCLAPVVKVLDEQ--FGIENGLMTTVHAYTND-QKNIDNPH-KDLRRARACGQSIIPTTTG---AAK 214 (343)
T ss_pred CCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEecccCc-ccccccch-hhhhcccccccceecCCCc---chh
Confidence 13579999999999999999999987 57789999999999995 77666543 22 23455443322 223
Q ss_pred HHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 274 EIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 274 EI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
-|.+.|-.+.+ +++=+..+||+..|.+.
T Consensus 215 ai~~viP~l~g---kl~g~avRVPt~~~s~~ 242 (343)
T PRK07729 215 ALAKVLPHLNG---KLHGMALRVPTPNVSLV 242 (343)
T ss_pred hHHHhccccCC---eEEEEEEEeeecCeEEE
Confidence 33344443333 58889999999999764
No 37
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.45 E-value=5.8e-13 Score=126.08 Aligned_cols=160 Identities=15% Similarity=0.216 Sum_probs=114.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc--CCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~--aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+||+|||+ |.+|..++..|.+.+++++..+..... .+....+.+- ... .....+.+ ..+ .++|+||.|+|+..
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~G-i~~-~~~~~e~l-l~~-~dIDaV~iaTp~~~ 76 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELG-VKT-SAEGVDGL-LAN-PDIDIVFDATSAKA 76 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCC-CCE-EECCHHHH-hcC-CCCCEEEECCCcHH
Confidence 79999995 999999988777789999999876432 2212221110 000 00011111 001 36999999999999
Q ss_pred hHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhhhhh
Q 021865 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (306)
Q Consensus 142 s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~LaL~ 220 (306)
..+++.++ ++|+.|||+++.++ .|+..|++|.+..-+ ..+.++|+||||.++.++++|.
T Consensus 77 H~e~a~~al~aGk~VIdekPa~~------------~plvvp~VN~~~~~~--------~~~~~iv~c~~~atip~~~al~ 136 (285)
T TIGR03215 77 HARHARLLAELGKIVIDLTPAAI------------GPYVVPAVNLDEHLD--------APNVNMVTCGGQATIPIVAAIS 136 (285)
T ss_pred HHHHHHHHHHcCCEEEECCcccc------------CCccCCCcCHHHHhc--------CcCCCEEEcCcHHHHHHHHHHH
Confidence 99988765 88999999999983 589999999665422 2356899999999999999999
Q ss_pred HHHhccCCCCceEEEEeeeecC-cc-Cccccccc
Q 021865 221 PLIQANLIQYRNIIIDAKSGVS-GA-GRGAKEAN 252 (306)
Q Consensus 221 PL~~~~li~~~~iiV~a~sgvS-GA-Gr~~~~~~ 252 (306)
|+++.+. ..++.+++..| |. ||.+.+++
T Consensus 137 r~~d~~~----~~iv~ti~s~S~g~g~r~~idel 166 (285)
T TIGR03215 137 RVAPVHY----AEIVASIASRSAGPGTRANIDEF 166 (285)
T ss_pred Hhhcccc----EEEEEEEEeeccCCCchhHHHHH
Confidence 9997652 25677888888 48 58877763
No 38
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=99.37 E-value=7.8e-12 Score=124.03 Aligned_cols=213 Identities=12% Similarity=0.119 Sum_probs=140.3
Q ss_pred CccEEEEEccccHHHHHHHHHHhcC--CCceEEEEeccccCCc-----ccccccCCccc--------------CCCcccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQ-----SIGSVFPHLIS--------------QDLPTMV 120 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~H--P~~el~~l~S~~~aGk-----~l~~~~p~l~~--------------~~~~~~~ 120 (306)
+++||+|=| -|=+|+.++|.+... +++|++.+-....... ++..+|..+.. ..+....
T Consensus 74 ~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 74 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred ceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEE
Confidence 448999988 899999999987644 7888887732111000 11123332221 1111011
Q ss_pred ccC--cccC--CCCCEEEecCCccchHHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccc
Q 021865 121 AVK--DADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS 195 (306)
Q Consensus 121 ~~~--~~~~--~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~ 195 (306)
.-+ +.+| .++|+||.|++...+.+.++. +++|+++||+| ++|.++ +.|..+|++|.+. |.
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~--------dvptvV~GVN~~~-~~----- 217 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGA--------DIPTYVVGVNEDD-YD----- 217 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCC--------CCceEecccCHHH-hC-----
Confidence 112 2335 489999999999999998865 58999999999 788864 3678899998874 31
Q ss_pred hhcccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCcccccccc-----HHHHhcCceeecCCCCC
Q 021865 196 REDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSYGVTRHR 270 (306)
Q Consensus 196 r~~i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~-----~~e~~~n~~~Y~~~~Hr 270 (306)
. ...++|+||.|.+.+++..|+||.++ +++++..++|++++|+-=+- .+..| ......|+.|..-+..+
T Consensus 218 --~-~~~~IISnaSCTTNcLAPvlkvL~d~--fGI~~g~mTTvHs~T~dQ~~-~D~~h~D~Rr~Raaa~nIIPtsTGAAk 291 (442)
T PLN02237 218 --H-EVANIVSNASCTTNCLAPFVKVLDEE--FGIVKGTMTTTHSYTGDQRL-LDASHRDLRRARAAALNIVPTSTGAAK 291 (442)
T ss_pred --c-CCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEeccCCccc-ccCCCcccccccccccccccCCcchhh
Confidence 0 12579999999999999999999987 57789999999999995322 22222 12345788888777554
Q ss_pred chhHHHHHhhcccCCcceEEEEeeeecccccc
Q 021865 271 HVPEIEQGLTGFASSKVTVSFTPHLMPMVTVS 302 (306)
Q Consensus 271 H~pEI~q~L~~~~~~~~~v~FtphlvP~~RGi 302 (306)
-+..+-=+| .| +++-...+||+.-|-
T Consensus 292 Av~~VlP~L---~G---Kl~g~A~RVPt~nvS 317 (442)
T PLN02237 292 AVSLVLPQL---KG---KLNGIALRVPTPNVS 317 (442)
T ss_pred hhceecccC---CC---ceeeEEEecccCCce
Confidence 333332223 22 356666677776653
No 39
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.32 E-value=5.2e-11 Score=115.28 Aligned_cols=208 Identities=11% Similarity=0.080 Sum_probs=139.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccc-cCCc-----ccccccCCcc--------------c-CCCcccc--
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAGQ-----SIGSVFPHLI--------------S-QDLPTMV-- 120 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~-~aGk-----~l~~~~p~l~--------------~-~~~~~~~-- 120 (306)
+||||=| -|=+|+.++|.+...++++++.+-... .... ++..+|.++. + .....+.
T Consensus 3 ~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~ 81 (342)
T PTZ00353 3 ITVGING-FGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKH 81 (342)
T ss_pred eEEEEEC-CChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecC
Confidence 7999988 699999999998877889998874211 1000 1112333321 0 0111111
Q ss_pred ccCcccCC--CCCEEEecCCccchH--HHHHh-c-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhccccc
Q 021865 121 AVKDADFS--NVDAVFCCLPHGTTQ--EIIKG-L-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (306)
Q Consensus 121 ~~~~~~~~--~~DvVF~alp~~~s~--~~~~~-l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl 194 (306)
++++..|. ++|+||.|++...+. .+.+. . .+++.|+|.|. +.|..+|++|.+. |.
T Consensus 82 dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--------------d~p~vV~gVN~~~-~~---- 142 (342)
T PTZ00353 82 DLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--------------DAPTVMAGSNDER-LS---- 142 (342)
T ss_pred CcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--------------CCCeEEecCChHH-cC----
Confidence 12233455 899999999987443 34332 2 46788999872 2467888888774 31
Q ss_pred chhcccCCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEee---eecCccCc-ccccccc--HHHHhcCceeecCCC
Q 021865 195 SREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAK---SGVSGAGR-GAKEANL--YSEIAEGIYSYGVTR 268 (306)
Q Consensus 195 ~r~~i~~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~---sgvSGAGr-~~~~~~~--~~e~~~n~~~Y~~~~ 268 (306)
...++|+||.|.+.+++..++||.++ +++++..++|+ |.+|++|. .++.+.. ..-...|+.|..-+.
T Consensus 143 -----~~~~IISnaSCTTn~LapvlkvL~~~--fGI~~g~mTTvHs~q~~~~~d~~~~~~~d~rr~RaA~~nIiPtstga 215 (342)
T PTZ00353 143 -----ASLPVCCAGAPIAVALAPVIRALHEV--YGVEECSYTAIHGMQPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNG 215 (342)
T ss_pred -----CCCCEEECCCHHHHHHHHHHHHHHHh--cCeeEEEeeeeeecceeecCCCcccccccccccchHHhCCcccCCcc
Confidence 12479999999999999999999987 57788999999 99999988 4433322 334567788877777
Q ss_pred CCchhHHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 269 HRHVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 269 HrH~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
++ |+.+.|-.+.| +++-+..+||+..|.+.
T Consensus 216 ak---av~kVlP~L~g---kl~g~avRVPt~~vs~v 245 (342)
T PTZ00353 216 AE---TVCKLLPHLVG---RISGSAFQVPVKKGCAI 245 (342)
T ss_pred hh---hhhhhccccCC---cEEEEEEEccccCeEEE
Confidence 75 44444433333 38999999999999763
No 40
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=98.91 E-value=2.5e-08 Score=99.78 Aligned_cols=217 Identities=12% Similarity=0.139 Sum_probs=130.8
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcC----CCceEEEEeccccC-Cc--------ccccccCCcccCCCccccccCc--c
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANH----PYFGIKLMTADRKA-GQ--------SIGSVFPHLISQDLPTMVAVKD--A 125 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~H----P~~el~~l~S~~~a-Gk--------~l~~~~p~l~~~~~~~~~~~~~--~ 125 (306)
.+..||+|-| =|=+|+.++|+|... ++++++.+..|... +. +...+|-.+.+ + + ..++ .
T Consensus 125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~-~---v-~~~~~~~ 198 (477)
T PRK08289 125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNG-T---I-TVDEENN 198 (477)
T ss_pred CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCC-c---e-EeecCCC
Confidence 3457899988 899999999998865 67899888532211 11 11123333321 1 1 1110 1
Q ss_pred cC--CCCCEEEecCCccchHHHHHhc-CCCCeEEECCcccccCCcc-chhh------h-------cCCCCCCcchhhhhh
Q 021865 126 DF--SNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVS-EYEE------W-------YGQPHIAPDLQKEAV 188 (306)
Q Consensus 126 ~~--~~~DvVF~alp~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~-~y~~------w-------Y~~~h~~Pel~~~av 188 (306)
.+ .+-.+-++.-..-....| ..+ -.++.|||+||.||.++.. .+-+ - .+.|..+|++|.+
T Consensus 199 ~liing~~I~v~~~~dP~~i~W-~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~-- 275 (477)
T PRK08289 199 AIIANGNYIQVIYANSPEEVDY-TAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHS-- 275 (477)
T ss_pred EEEECCEEEEEEecCChHHCCc-hhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHH--
Confidence 11 233344443322111112 122 2356899999999887510 0000 0 0133444444443
Q ss_pred hcccccchhccc-CCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHH-----hcCce
Q 021865 189 YGLTEISREDIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEI-----AEGIY 262 (306)
Q Consensus 189 YGLpEl~r~~i~-~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~-----~~n~~ 262 (306)
.+. ..++|+||.|.+.+++..|+||.++ +++++..++|+.++|+ |.+..++.|-.++ +-|+.
T Consensus 276 ---------~~~~~~~IISnASCTTN~LaPvlKvL~d~--fGI~~g~mTTvHa~T~-dQ~lvD~~hkd~RrgRaaa~NII 343 (477)
T PRK08289 276 ---------DITDEDKIVSAASCTTNAITPVLKAVNDK--YGIVNGHVETVHSYTN-DQNLIDNYHKGDRRGRSAPLNMV 343 (477)
T ss_pred ---------HhCCCCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEecccC-ChHHhhhhhhcCcccceeeeeeE
Confidence 332 2579999999999999999999986 5778899999999999 9999887653222 23433
Q ss_pred eecCCCCCchhHHHHHhhcccCCcceEEEEeeeecccccccc
Q 021865 263 SYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSLR 304 (306)
Q Consensus 263 ~Y~~~~HrH~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil~ 304 (306)
|- ..-..-++.+.|-.+.| +++-+..+||+..|.+.
T Consensus 344 pt---sTGAAkAv~kVLP~L~G---Kltg~avRVPt~nvS~v 379 (477)
T PRK08289 344 IT---ETGAAKAVAKALPELAG---KLTGNAIRVPTPNVSMA 379 (477)
T ss_pred ec---CCChhhhhhhcccccCC---cEEEEEEEeccccEEEE
Confidence 22 33334477776655444 38999999999998764
No 41
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.01 E-value=1.1e-05 Score=67.06 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=60.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc---CCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~---aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|||+|+|++|-.|+++++.+.++|+++++....++. .|+.+.+.-... ....+...++ ++.++.+|+++-++-+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l-~~~~~~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDL-EELLEEADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-H-HHHTTH-SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhH-HHhcccCCEEEEcCChH
Confidence 699999999999999999999999999998876554 676665432111 1111111222 22345699999888666
Q ss_pred chHHHHHhc-CCCCeEEE
Q 021865 141 TTQEIIKGL-PKSLKIVD 157 (306)
Q Consensus 141 ~s~~~~~~l-~~g~~VID 157 (306)
...+.++.+ +.|+.+|=
T Consensus 79 ~~~~~~~~~~~~g~~~Vi 96 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVI 96 (124)
T ss_dssp HHHHHHHHHHHHT-EEEE
T ss_pred HhHHHHHHHHhCCCCEEE
Confidence 666766654 66776664
No 42
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=97.97 E-value=6.7e-06 Score=73.57 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=50.0
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCccc--CCCccccccCcccCCCCCEEEecC
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS--QDLPTMVAVKDADFSNVDAVFCCL 137 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~--~~~~~~~~~~~~~~~~~DvVF~al 137 (306)
...|+.+.|+||||.+|++|+++++..|.+.-+++..||..-. .+.+..+.. .|...+++. ..++.+.|+.||||
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d--~at~k~v~q~~vDf~Kl~~~-a~~~qg~dV~FcaL 91 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPD--PATDKVVAQVEVDFSKLSQL-ATNEQGPDVLFCAL 91 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCC--ccccceeeeEEechHHHHHH-HhhhcCCceEEEee
Confidence 3456789999999999999999999999997666555553111 111222211 222112222 23456899999999
Q ss_pred Ccc
Q 021865 138 PHG 140 (306)
Q Consensus 138 p~~ 140 (306)
++.
T Consensus 92 gTT 94 (238)
T KOG4039|consen 92 GTT 94 (238)
T ss_pred ccc
Confidence 864
No 43
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.97 E-value=2.8e-05 Score=72.47 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=58.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
|+||+|+|++|.+|+.+++.+.++|+++++.+..+...... .. ... +.....++ ++.+.++|+|+.++++...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~--~~-~~~---~i~~~~dl-~~ll~~~DvVid~t~p~~~ 73 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV--GQ-GAL---GVAITDDL-EAVLADADVLIDFTTPEAT 73 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc--cc-CCC---CccccCCH-HHhccCCCEEEECCCHHHH
Confidence 58999999999999999999999999999998754432111 00 111 11111112 1123468999977777777
Q ss_pred HHHHHh-cCCCCeEEE
Q 021865 143 QEIIKG-LPKSLKIVD 157 (306)
Q Consensus 143 ~~~~~~-l~~g~~VID 157 (306)
.+++.. +++|+.||-
T Consensus 74 ~~~~~~al~~G~~vvi 89 (257)
T PRK00048 74 LENLEFALEHGKPLVI 89 (257)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 777755 588888874
No 44
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.94 E-value=1.1e-05 Score=69.41 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=58.5
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCccc--CCCccccccCcccCCCCCEEEecCCccc--
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~--~~~~~~~~~~~~~~~~~DvVF~alp~~~-- 141 (306)
|+|+||||++|+.|++.|.+.+ .+++.++.+.. +..+ .+.+.. .|+.+.+.+ ...+.++|+||+++++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~---~~~~-~~~~~~~~~d~~d~~~~-~~al~~~d~vi~~~~~~~~~ 74 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPS---KAED-SPGVEIIQGDLFDPDSV-KAALKGADAVIHAAGPPPKD 74 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG---GHHH-CTTEEEEESCTTCHHHH-HHHHTTSSEEEECCHSTTTH
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCch---hccc-ccccccceeeehhhhhh-hhhhhhcchhhhhhhhhccc
Confidence 7899999999999999999877 78888874432 1221 233321 232222222 234578999999998422
Q ss_pred ---hHHHHHhc-CCC-CeEEECCcccccCC
Q 021865 142 ---TQEIIKGL-PKS-LKIVDLSADFRLRD 166 (306)
Q Consensus 142 ---s~~~~~~l-~~g-~~VIDlSadfRl~~ 166 (306)
...+.+++ ..| .++|-+|+..-..+
T Consensus 75 ~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~ 104 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAGVKRVVYLSSAGVYRD 104 (183)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETTGTTT
T ss_pred ccccccccccccccccccceeeeccccCCC
Confidence 23344444 334 47777776554443
No 45
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.81 E-value=5.5e-05 Score=73.17 Aligned_cols=87 Identities=16% Similarity=0.286 Sum_probs=61.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
++||+|+| +|.+|+..++.|.++|+++++.+.+++..++ +.+..+.. . ..+. .+.+.++|+|++|+|+..-
T Consensus 3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~-~~~~~~v~---~---~~d~-~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAET-LDTETPVY---A---VADD-EKHLDDVDVLILCMGSATD 73 (324)
T ss_pred CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHHH-HhhcCCcc---c---cCCH-HHhccCCCEEEEcCCCccC
Confidence 58999999 5999999999999999999999877653221 11111111 1 0111 1223579999999998776
Q ss_pred HHHH-HhcCCCCeEEEC
Q 021865 143 QEII-KGLPKSLKIVDL 158 (306)
Q Consensus 143 ~~~~-~~l~~g~~VIDl 158 (306)
.+.+ +.|++|.-|||-
T Consensus 74 ~~~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDS 90 (324)
T ss_pred HHHHHHHHHcCCCEEEC
Confidence 6655 567999999996
No 46
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.77 E-value=6.1e-05 Score=70.53 Aligned_cols=92 Identities=16% Similarity=0.308 Sum_probs=61.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
|+||+|+|+ |.+|+.+++.|.++|.++++.+..+....+.....+.. ......++++. -.+.|+|+-|+|+...
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~----~~~~~~d~~~l-~~~~DvVve~t~~~~~ 74 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE----AVRVVSSVDAL-PQRPDLVVECAGHAAL 74 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc----CCeeeCCHHHh-ccCCCEEEECCCHHHH
Confidence 589999998 99999999999999999998877432221111111100 01111111111 1468999999999877
Q ss_pred HHHHHh-cCCCCeEEECCc
Q 021865 143 QEIIKG-LPKSLKIVDLSA 160 (306)
Q Consensus 143 ~~~~~~-l~~g~~VIDlSa 160 (306)
.+++.+ +++|+.|+-.|.
T Consensus 75 ~e~~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 75 KEHVVPILKAGIDCAVISV 93 (265)
T ss_pred HHHHHHHHHcCCCEEEeCh
Confidence 787765 588998887554
No 47
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.77 E-value=5.2e-05 Score=71.67 Aligned_cols=95 Identities=16% Similarity=0.276 Sum_probs=53.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s- 142 (306)
|||.|+||||++|+.|++.|.++. .+++.++.+...-..+...--.+...|+.+...+ ...+.++|+||.+.+....
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l-~~al~g~d~Vi~~~~~~~~~ 78 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVRNLRKASFLKEWGAELVYGDLSLPETL-PPSFKGVTAIIDASTSRPSD 78 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHH-HHHHCCCCEEEECCCCCCCC
Confidence 489999999999999999998763 5777776332111111100000111233222222 2335789999998653211
Q ss_pred ------------HHHHHhc-CCCC-eEEECCc
Q 021865 143 ------------QEIIKGL-PKSL-KIVDLSA 160 (306)
Q Consensus 143 ------------~~~~~~l-~~g~-~VIDlSa 160 (306)
..++++. ..|+ ++|=+|+
T Consensus 79 ~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 79 LYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2344444 3454 7777776
No 48
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.77 E-value=3.1e-05 Score=70.66 Aligned_cols=138 Identities=17% Similarity=0.302 Sum_probs=91.0
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcC-CCceEEEEecc--ccCCcccccccCCcccCCCc--cc-cccCcccCCCCCEEE
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTAD--RKAGQSIGSVFPHLISQDLP--TM-VAVKDADFSNVDAVF 134 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~H-P~~el~~l~S~--~~aGk~l~~~~p~l~~~~~~--~~-~~~~~~~~~~~DvVF 134 (306)
.++.||+|+| +|-+|..|+-.+++| .+.|..++..- .+.|- ...- +| +.... -+ --+...++.+.|+||
T Consensus 2 ~sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdgl--araa-rl-gv~tt~egv~~ll~~p~~~di~lvf 76 (310)
T COG4569 2 SSKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGL--ARAA-RL-GVATTHEGVIGLLNMPEFADIDLVF 76 (310)
T ss_pred CCcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHH--HHHH-hc-CCcchhhHHHHHHhCCCCCCcceEE
Confidence 4568999999 999999999988888 67787777652 22221 1000 01 00000 00 011234467889999
Q ss_pred ecCCccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHH
Q 021865 135 CCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPT 213 (306)
Q Consensus 135 ~alp~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~T 213 (306)
-++..++-.+.++++ +.|++.|||..+-- -|.++|-+|.+..-+ -.+-+.|.+.|-.+.
T Consensus 77 datsa~~h~~~a~~~ae~gi~~idltpaai------------gp~vvp~~n~~eh~~--------a~nvnmvtcggqati 136 (310)
T COG4569 77 DATSAGAHVKNAAALAEAGIRLIDLTPAAI------------GPYVVPVVNLEEHVD--------ALNVNMVTCGGQATI 136 (310)
T ss_pred eccccchhhcchHhHHhcCCceeecchhcc------------CCeeccccchHHhcC--------CCCcceEeecCcccc
Confidence 999999888888887 78999999987543 366777777655433 245678999888766
Q ss_pred HHhhhhhHHH
Q 021865 214 SIQLPLVPLI 223 (306)
Q Consensus 214 a~~LaL~PL~ 223 (306)
-+..+.....
T Consensus 137 piv~avsrvv 146 (310)
T COG4569 137 PIVAAVSRVV 146 (310)
T ss_pred hhhhhhhhhe
Confidence 6665554443
No 49
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.73 E-value=0.0001 Score=69.18 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=64.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc---CCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~---aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
|+||+|+|++|..|+.+++.+.++|+++++.+..+.. .++.+.+.... .........++++. ..++|+|+-|+++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~-~~~gv~~~~d~~~l-~~~~DvVIdfT~p 78 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVTDDLEAV-ETDPDVLIDFTTP 78 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCc-CcCCceeeCCHHHh-cCCCCEEEECCCh
Confidence 5799999999999999999999999999999876432 24333322110 00011111111111 1458999999999
Q ss_pred cchHHHHHh-cCCCCeEEECCccc
Q 021865 140 GTTQEIIKG-LPKSLKIVDLSADF 162 (306)
Q Consensus 140 ~~s~~~~~~-l~~g~~VIDlSadf 162 (306)
....+++.. ++.|+.||--+..|
T Consensus 79 ~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC
Confidence 888887765 48888888644444
No 50
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.68 E-value=0.00044 Score=67.24 Aligned_cols=201 Identities=12% Similarity=0.123 Sum_probs=120.0
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCc--c------cccccCCcc------cCCCccccccCcccCCCCC
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ--S------IGSVFPHLI------SQDLPTMVAVKDADFSNVD 131 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk--~------l~~~~p~l~------~~~~~~~~~~~~~~~~~~D 131 (306)
|||+|. |.+|+.++|.+.++|+++++.+... .... . +...|+... ...+.....+ ++-+.++|
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~-~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~-eeLl~~vD 77 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKT-SPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTL-EDLLEKVD 77 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecC-ChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCH-HHHhhcCC
Confidence 689994 9999999999998899999988642 2110 1 111111000 0000000011 11236799
Q ss_pred EEEecCCccchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCC
Q 021865 132 AVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGC 210 (306)
Q Consensus 132 vVF~alp~~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGC 210 (306)
+|+.|+|.....+-.+.+ ..|.+.|=.|+-.. + + ++. -++|| .|.++..+..+|+|.-|
T Consensus 78 iVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~--~---------~----~~~--tfv~g---vN~~~~~~~~~vs~aSC 137 (333)
T TIGR01546 78 IVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA--E---------V----ADV--SFVAQ---ANYEAALGKDYVRVVSC 137 (333)
T ss_pred EEEECCCCCCChhhHHHHHhCCcCEEEECCCCC--C---------C----CCc--eEEee---eCHHHcCcCceEEecCc
Confidence 999999998887766554 44544443555411 1 0 110 12444 34455555569999999
Q ss_pred hHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHHHHhcCceee--cCCCCCchhHHHHHhhcccCCcce
Q 021865 211 YPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSY--GVTRHRHVPEIEQGLTGFASSKVT 288 (306)
Q Consensus 211 y~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~e~~~n~~~Y--~~~~HrH~pEI~q~L~~~~~~~~~ 288 (306)
.++++.-.+++|.++ +++++..+++.-. .+... ....-+..|+.|= .+.+|. .+-+...|-. ++
T Consensus 138 tTn~Lap~~~~L~~~--fGI~~~~~Ttvh~---t~dq~---d~rrgr~~~IiP~~~t~ps~~-a~av~~VlP~-----L~ 203 (333)
T TIGR01546 138 NTTGLVRTLNAINDY--SKVDKVRAVMVRR---AADPN---DVKKGPINAIVPDPVTVPSHH-GPDVQTVIPN-----LN 203 (333)
T ss_pred hHhhHHHHHHHHHHh--cCeEEEEEEEEee---cCChh---hhccCchhceEeCCCCCCCch-HHHHHHcCCC-----CC
Confidence 999999999999886 4666777777762 22221 1223446888887 344454 6767666643 33
Q ss_pred EEEEeeeeccccccc
Q 021865 289 VSFTPHLMPMVTVSL 303 (306)
Q Consensus 289 v~FtphlvP~~RGil 303 (306)
+.=...+||..-+.+
T Consensus 204 i~g~AvrVPt~~vs~ 218 (333)
T TIGR01546 204 IETMAFVVPTTLMHV 218 (333)
T ss_pred ccEEEEEeCCCCcEE
Confidence 566666788877654
No 51
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.47 E-value=0.00016 Score=79.26 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=65.8
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcCCCce------------EEEEeccc-cCCcccccccCCccc--CCCccccccCc
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFG------------IKLMTADR-KAGQSIGSVFPHLIS--QDLPTMVAVKD 124 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~HP~~e------------l~~l~S~~-~aGk~l~~~~p~l~~--~~~~~~~~~~~ 124 (306)
...|.||+|+|| |++|+..++.|.++|+++ ++.+++.. ...+.+.+.+|+... .|..+.+.+ .
T Consensus 566 ~~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L-~ 643 (1042)
T PLN02819 566 TKKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESL-L 643 (1042)
T ss_pred cccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHH-H
Confidence 345779999997 999999999999999877 45555432 222334433443211 111122222 1
Q ss_pred ccCCCCCEEEecCCccchHHHHHhc-CCCCeEEECC
Q 021865 125 ADFSNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLS 159 (306)
Q Consensus 125 ~~~~~~DvVF~alp~~~s~~~~~~l-~~g~~VIDlS 159 (306)
..++++|+|+.|+|...-.+++.+. +.|+.++|.+
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 1235799999999998888888765 8899999998
No 52
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.43 E-value=0.00029 Score=66.27 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=60.8
Q ss_pred cCccEEEEEccccHHHHHHHHHHhc-CCCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~-HP~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
++++||+||| .|.+|+.+.+.|.+ .|.++++.+..+... -+.+.+.+... ....+++ +.+.++|+|+.|+|
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~--~~~~~~e----ell~~~D~Vvi~tp 76 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRP--PPVVPLD----QLATHADIVVEAAP 76 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCC--cccCCHH----HHhcCCCEEEECCC
Confidence 3458999999 69999999999987 699999888654321 11122111100 0011121 12356899999999
Q ss_pred ccchHHHHHh-cCCCCeEEECC
Q 021865 139 HGTTQEIIKG-LPKSLKIVDLS 159 (306)
Q Consensus 139 ~~~s~~~~~~-l~~g~~VIDlS 159 (306)
+..-.++..+ +++|+.||.+|
T Consensus 77 ~~~h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 77 ASVLRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred cHHHHHHHHHHHHcCCcEEEec
Confidence 9888888755 58888888654
No 53
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.36 E-value=9.2e-05 Score=66.56 Aligned_cols=96 Identities=24% Similarity=0.418 Sum_probs=55.1
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEeccccC--CcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc---
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--- 140 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a--Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~--- 140 (306)
|+|+||||..|+.+++.|.+ +.+++..++..... -+.+.+.--.+...|+.+.+.+ ...+.++|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l-~~al~g~d~v~~~~~~~~~~ 78 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESL-VAALKGVDAVFSVTPPSHPS 78 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHH-HHHHTTCSEEEEESSCSCCC
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHH-HHHHcCCceEEeecCcchhh
Confidence 78999999999999999998 78889998754311 1111110000111233222223 23468999999999932
Q ss_pred ch---HHHHHhc-CCCC-eEE--ECCcccc
Q 021865 141 TT---QEIIKGL-PKSL-KIV--DLSADFR 163 (306)
Q Consensus 141 ~s---~~~~~~l-~~g~-~VI--DlSadfR 163 (306)
.. ..++.+. ++|+ ++| ++..+++
T Consensus 79 ~~~~~~~li~Aa~~agVk~~v~ss~~~~~~ 108 (233)
T PF05368_consen 79 ELEQQKNLIDAAKAAGVKHFVPSSFGADYD 108 (233)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEESEESSGTT
T ss_pred hhhhhhhHHHhhhccccceEEEEEeccccc
Confidence 21 3344444 4464 444 5555554
No 54
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.0098 Score=57.75 Aligned_cols=210 Identities=16% Similarity=0.162 Sum_probs=125.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCC-CceEEEEeccccCCc-----ccccccCCcccC----C---------CccccccC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAGQ-----SIGSVFPHLISQ----D---------LPTMVAVK 123 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~S~~~aGk-----~l~~~~p~l~~~----~---------~~~~~~~~ 123 (306)
|+||+|=| -|-+|+.++|.+...+ ++|++.+-.-..... .....|..+.+. + .......+
T Consensus 1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 58999988 8999999999999888 799888753111100 011123333221 0 00011111
Q ss_pred cccC----CCCCEEEecCCccchHHHHHh-cCC-CCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchh
Q 021865 124 DADF----SNVDAVFCCLPHGTTQEIIKG-LPK-SLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (306)
Q Consensus 124 ~~~~----~~~DvVF~alp~~~s~~~~~~-l~~-g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~ 197 (306)
++.+ .++|+|+-|+|-..+++-.++ +++ |.+-|=.|+---=+ + ...+||. |.+
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~--------------~----~~vv~gv---n~~ 138 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDD--------------V----ATVVYGV---NHN 138 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCC--------------c----cEEEEec---ccc
Confidence 1222 257899999999999887765 555 44433355522110 1 2236663 333
Q ss_pred ccc-CCcEEecCCChHHHHhhhhhHHHhccCCCCceEEEEeeeecCccCccccccccHH-----HHhcCceeecCCCCCc
Q 021865 198 DIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYS-----EIAEGIYSYGVTRHRH 271 (306)
Q Consensus 198 ~i~-~a~lVAnPGCy~Ta~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~~~-----e~~~n~~~Y~~~~HrH 271 (306)
.+. +..+|+|.-|.++++.-.+++|.++ ++++...++|.-.+++--+- .+..|-. ....|+.| ...| |
T Consensus 139 ~~~~~~~iVsnaSCTTNcLap~~kvl~d~--fGI~~g~mTtVh~~T~dQ~~-~dgph~~~rr~raa~~niIp--~sTg-a 212 (335)
T COG0057 139 YYDAGHTIVSNASCTTNCLAPVAKVLNDA--FGIEKGLMTTVHAYTNDQKL-VDGPHKDLRRARAAALNIIP--TSTG-A 212 (335)
T ss_pred ccCCCCcEEEEccchhhhhHHHHHHHHHh--cCeeEEEEEEEEcccCCCcc-ccCcccchhhhccccCCCCc--CCCc-c
Confidence 334 5789999999999999999999887 57777778887766554322 2222211 11222222 2233 5
Q ss_pred hhHHHHHhhcccCCcceEEEEeeeeccccccc
Q 021865 272 VPEIEQGLTGFASSKVTVSFTPHLMPMVTVSL 303 (306)
Q Consensus 272 ~pEI~q~L~~~~~~~~~v~FtphlvP~~RGil 303 (306)
.+-|...|-.+.|+ +.=+..+||..-+.+
T Consensus 213 Akav~~VlP~L~gK---l~g~A~RVPt~~vs~ 241 (335)
T COG0057 213 AKAVGLVLPELKGK---LTGMAIRVPTPNVSV 241 (335)
T ss_pred hhhhhhhCcccCCc---eeeEEEEecCCCcEE
Confidence 78887777665553 666666888877655
No 55
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0003 Score=69.66 Aligned_cols=181 Identities=19% Similarity=0.188 Sum_probs=104.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccc-ccCCccc--CCCccccccCcccCCCCCEEEecCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-VFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~-~~p~l~~--~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
|+||.|||| |.+|+..++.|+++-+.++.........-.++.+ ..+++.. .|..+...+ .+.+.+.|+|+.|+|.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al-~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDAL-VALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHH-HHHHhcCCEEEEeCCc
Confidence 689999999 9999999999998888777666422111122221 1122221 121111111 2334677999999999
Q ss_pred cchHHHHHhc-CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhhh
Q 021865 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLP 218 (306)
Q Consensus 140 ~~s~~~~~~l-~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~La 218 (306)
-....+.++. +.|+.++|.|-+--. + | + .++..+++.+.+-++| ++.-+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~-----~--~--------~------------~~~~a~~Agit~v~~~---G~dPG 128 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP-----P--W--------K------------LDEEAKKAGITAVLGC---GFDPG 128 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch-----h--h--------h------------hhHHHHHcCeEEEccc---CcCcc
Confidence 9999999876 889999998763221 0 1 1 1233456778888888 33322
Q ss_pred h----hHHHhccCCCCceEEEEeeeecCccCc------cc--cccccHHHHhcCceeecCCCCCchhHHH
Q 021865 219 L----VPLIQANLIQYRNIIIDAKSGVSGAGR------GA--KEANLYSEIAEGIYSYGVTRHRHVPEIE 276 (306)
Q Consensus 219 L----~PL~~~~li~~~~iiV~a~sgvSGAGr------~~--~~~~~~~e~~~n~~~Y~~~~HrH~pEI~ 276 (306)
+ +--..+-+.+ +--.|+.+-|-.|... +. ..+.++.|.....+.+.=+.=++.+..+
T Consensus 129 i~nv~a~~a~~~~~~-~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~~~ 197 (389)
T COG1748 129 ITNVLAAYAAKELFD-EIESIDIYVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDPLE 197 (389)
T ss_pred hHHHHHHHHHHHhhc-cccEEEEEEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecCcc
Confidence 2 2222222221 1224666766666544 22 3334456666666666666544444433
No 56
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.27 E-value=0.00025 Score=69.07 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=54.3
Q ss_pred EEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccCCcccccc--cCCcc--cCCCccccccCcccCCCCCEEEecCCcc
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSV--FPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~~~--~p~l~--~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|.|+|+ |++|+.+++.|.+++.+ +++....+....+.+.+. ...+. ..|..+.+.+ .+.++++|+|+.|+|.-
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESL-AELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHH-HHHHTTSSEEEE-SSGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHH-HHHHhcCCEEEECCccc
Confidence 689999 99999999999999888 555554322221222211 11111 1122111112 12247899999999887
Q ss_pred chHHHHHhc-CCCCeEEECCc
Q 021865 141 TTQEIIKGL-PKSLKIVDLSA 160 (306)
Q Consensus 141 ~s~~~~~~l-~~g~~VIDlSa 160 (306)
....++++. +.|+..||.|.
T Consensus 79 ~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GHHHHHHHHHHHT-EEEESS-
T ss_pred hhHHHHHHHHHhCCCeeccch
Confidence 777888765 88999999544
No 57
>PLN02427 UDP-apiose/xylose synthase
Probab=97.20 E-value=0.0005 Score=66.67 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=30.4
Q ss_pred cccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++.+.|||.|.|||||+|+.|++.|.+....+++.+.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 4556679999999999999999999977556777664
No 58
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.12 E-value=0.00066 Score=60.02 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=54.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc-CCcccccccC---C--cccCCCccccccCcccCCCCCEEEec
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFP---H--LISQDLPTMVAVKDADFSNVDAVFCC 136 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~-aGk~l~~~~p---~--l~~~~~~~~~~~~~~~~~~~DvVF~a 136 (306)
..++.|+|+||.+|+.+.+.|.++. .++..+ +|+. ..+.+.+... . +...+..+.+++ .+.+.++|+||.|
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~diVi~a 104 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG-ARVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAAR-AAAIKGADVVFAA 104 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHH-HHHHhcCCEEEEC
Confidence 3689999999999999999998764 466655 4332 1111111111 0 000011111111 1234689999999
Q ss_pred CCccchHHHH-H-hcCCCCeEEECCccc
Q 021865 137 LPHGTTQEII-K-GLPKSLKIVDLSADF 162 (306)
Q Consensus 137 lp~~~s~~~~-~-~l~~g~~VIDlSadf 162 (306)
+|.+...... + ....+..|+|+..--
T Consensus 105 t~~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 105 GAAGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred CCCCceechhhhcccCceeEEEEccCCC
Confidence 9988741111 2 223467899976543
No 59
>PRK11579 putative oxidoreductase; Provisional
Probab=97.09 E-value=0.0017 Score=62.55 Aligned_cols=89 Identities=19% Similarity=0.357 Sum_probs=56.7
Q ss_pred cCccEEEEEccccHHHHH-HHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 61 EKQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~E-LlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
++++||+||| +|.+|.. .++.+...|+++++.+.++... ...+.++.... ..+++++ .. -.++|+|+.|+|+
T Consensus 2 ~~~irvgiiG-~G~i~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~~~~~~--~~~~~el-l~-~~~vD~V~I~tp~ 74 (346)
T PRK11579 2 SDKIRVGLIG-YGYASKTFHAPLIAGTPGLELAAVSSSDAT--KVKADWPTVTV--VSEPQHL-FN-DPNIDLIVIPTPN 74 (346)
T ss_pred CCcceEEEEC-CCHHHHHHHHHHHhhCCCCEEEEEECCCHH--HHHhhCCCCce--eCCHHHH-hc-CCCCCEEEEcCCc
Confidence 3468999999 5888875 6788888999999998764321 12222221111 1111111 00 1368999999999
Q ss_pred cchHHHHH-hcCCCCeEE
Q 021865 140 GTTQEIIK-GLPKSLKIV 156 (306)
Q Consensus 140 ~~s~~~~~-~l~~g~~VI 156 (306)
..-.+++. ++++|+.|+
T Consensus 75 ~~H~~~~~~al~aGkhVl 92 (346)
T PRK11579 75 DTHFPLAKAALEAGKHVV 92 (346)
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 87777775 457777666
No 60
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.08 E-value=0.0015 Score=67.76 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=26.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
..|.|.||||++|+.+++.|++. ..+++.+..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~-G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKL-GFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeC
Confidence 56999999999999999999875 456766653
No 61
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.07 E-value=0.00065 Score=57.36 Aligned_cols=97 Identities=19% Similarity=0.334 Sum_probs=55.8
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcc-cccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS-IGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~-l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
....+||+|||| |-+|..|.+.|.+.- +++..+.+|+..... .....+ ... ..++ .+.+.++|++|+|.|
T Consensus 7 ~~~~l~I~iIGa-GrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~~~---~~~---~~~~-~~~~~~aDlv~iavp 77 (127)
T PF10727_consen 7 QAARLKIGIIGA-GRVGTALARALARAG-HEVVGVYSRSPASAERAAAFIG---AGA---ILDL-EEILRDADLVFIAVP 77 (127)
T ss_dssp -----EEEEECT-SCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--T---T--------T-TGGGCC-SEEEE-S-
T ss_pred CCCccEEEEECC-CHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccccc---ccc---cccc-ccccccCCEEEEEec
Confidence 344589999997 999999999998653 568788776653322 111111 111 1112 223468999999999
Q ss_pred ccchHHHHHhc-C-----CCCeEEECCcccccC
Q 021865 139 HGTTQEIIKGL-P-----KSLKIVDLSADFRLR 165 (306)
Q Consensus 139 ~~~s~~~~~~l-~-----~g~~VIDlSadfRl~ 165 (306)
++.-.+++..+ . .|..|+=.|+..-++
T Consensus 78 DdaI~~va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 78 DDAIAEVAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp CCHHHHHHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred hHHHHHHHHHHHHhccCCCCcEEEECCCCChHH
Confidence 99877777665 2 478899999988765
No 62
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.06 E-value=0.0011 Score=62.09 Aligned_cols=90 Identities=16% Similarity=0.276 Sum_probs=58.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcC-CCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~H-P~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|+||+||| .|.+|..+++.|.+. +.+++..+..+... .+.+.+.+ + .....++ ++.+.++|+|+.|+|+.
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~----~--~~~~~~~-~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT----G--AKACLSI-DELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc----C--CeeECCH-HHHhcCCCEEEEcCChH
Confidence 57999999 599999999998875 47888877654321 11111111 0 0111111 11126799999999988
Q ss_pred chHHHHHh-cCCCCeEEECCc
Q 021865 141 TTQEIIKG-LPKSLKIVDLSA 160 (306)
Q Consensus 141 ~s~~~~~~-l~~g~~VIDlSa 160 (306)
.-.++... ++.|+.||.+|.
T Consensus 73 ~~~~~~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 73 AVEEVVPKSLENGKDVIIMSV 93 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEch
Confidence 88888765 477888887664
No 63
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0032 Score=59.34 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=60.9
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC---CcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a---Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
+||||+|+||+|=.|+++++.+.+.|+++++....+... |+...+.- .+.....+...++ .....++|+++-.+-
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~-g~~~~gv~v~~~~-~~~~~~~DV~IDFT~ 78 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELA-GLGLLGVPVTDDL-LLVKADADVLIDFTT 78 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhc-cccccCceeecch-hhcccCCCEEEECCC
Confidence 479999999999999999999999999999887755432 22222110 0000111111111 112357899998877
Q ss_pred ccchHHHHHhc-CCCC-eEEECCc
Q 021865 139 HGTTQEIIKGL-PKSL-KIVDLSA 160 (306)
Q Consensus 139 ~~~s~~~~~~l-~~g~-~VIDlSa 160 (306)
...+.+.++.. +.+. .||--++
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEECCC
Confidence 67777777654 5554 5665544
No 64
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.02 E-value=0.0013 Score=62.14 Aligned_cols=92 Identities=17% Similarity=0.304 Sum_probs=61.0
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCC-ceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~-~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
++++||+|||+.|+.+...+..+.+.+. ++++.+.++... .+.+.+.|..- ....+++++ .+-.++|+|+.|+|
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~--~~~~~~~~l--l~~~~iD~V~Iatp 76 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA--KAYTDLEEL--LADPDIDAVYIATP 76 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC--cccCCHHHH--hcCCCCCEEEEcCC
Confidence 3679999999999999999999999888 688888654332 23333333210 011112111 01135899999999
Q ss_pred ccchHHHHH-hcCCCCeEE
Q 021865 139 HGTTQEIIK-GLPKSLKIV 156 (306)
Q Consensus 139 ~~~s~~~~~-~l~~g~~VI 156 (306)
+..=.+++. +|++|+.|+
T Consensus 77 ~~~H~e~~~~AL~aGkhVl 95 (342)
T COG0673 77 NALHAELALAALEAGKHVL 95 (342)
T ss_pred ChhhHHHHHHHHhcCCEEE
Confidence 988888774 568888776
No 65
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.02 E-value=0.0016 Score=63.92 Aligned_cols=84 Identities=18% Similarity=0.341 Sum_probs=58.6
Q ss_pred ccccccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEe
Q 021865 56 KTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (306)
Q Consensus 56 ~~~~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~ 135 (306)
-++.+..+++|+|||++|..|+.+.+.|.+.- .++.... ++. . + .. .+.+.++|+||+
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d-~~~-----------~---~--~~----~~~~~~aDlVil 148 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILE-QDD-----------W---D--RA----EDILADAGMVIV 148 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCC-CeEEEeC-CCc-----------c---h--hH----HHHHhcCCEEEE
Confidence 34555567899999999999999999998642 3344442 211 0 0 01 122367999999
Q ss_pred cCCccchHHHHHhc---CCCCeEEECCcc
Q 021865 136 CLPHGTTQEIIKGL---PKSLKIVDLSAD 161 (306)
Q Consensus 136 alp~~~s~~~~~~l---~~g~~VIDlSad 161 (306)
|+|.....++++.+ ..|+.|+|+++-
T Consensus 149 avP~~~~~~~~~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 149 SVPIHLTEEVIARLPPLPEDCILVDLTSV 177 (374)
T ss_pred eCcHHHHHHHHHHHhCCCCCcEEEECCCc
Confidence 99998887766544 468999999883
No 66
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.98 E-value=0.0028 Score=62.49 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=56.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..||+|||.+|..|+.|.+.|.+....++..+. +. + .. .... ++.+.++|+||+|+|-...
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D-~~-------d-----~~-----~~~~-~~~v~~aDlVilavPv~~~ 64 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHD-PA-------D-----PG-----SLDP-ATLLQRADVLIFSAPIRHT 64 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEc-CC-------c-----cc-----cCCH-HHHhcCCCEEEEeCCHHHH
Confidence 478999999999999999999864355654442 11 0 00 0011 2234689999999999888
Q ss_pred HHHHHh-------cCCCCeEEECCcc
Q 021865 143 QEIIKG-------LPKSLKIVDLSAD 161 (306)
Q Consensus 143 ~~~~~~-------l~~g~~VIDlSad 161 (306)
.++.+. +..++.|.|.++-
T Consensus 65 ~~~l~~l~~~~~~l~~~~iVtDVgSv 90 (370)
T PRK08818 65 AALIEEYVALAGGRAAGQLWLDVTSI 90 (370)
T ss_pred HHHHHHHhhhhcCCCCCeEEEECCCC
Confidence 776654 3468999999883
No 67
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.98 E-value=0.00081 Score=65.57 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=52.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCC-ceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~-~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
..+|.|+||||.+|+++++.|..+-. .++..+.........+.. .+...+ +.++ ++.+.++|+||.++....
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~---el~~~~---i~~l-~~~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQA---ELGGGK---ILSL-EEALPEADIVVWVASMPK 227 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHH---Hhcccc---HHhH-HHHHccCCEEEECCcCCc
Confidence 36899999999999999999985432 355555321111111111 111111 1122 234568999999986432
Q ss_pred hHHHH-HhcCCCCeEEECCc
Q 021865 142 TQEII-KGLPKSLKIVDLSA 160 (306)
Q Consensus 142 s~~~~-~~l~~g~~VIDlSa 160 (306)
...+- ..+.+++.|||++=
T Consensus 228 ~~~I~~~~l~~~~~viDiAv 247 (340)
T PRK14982 228 GVEIDPETLKKPCLMIDGGY 247 (340)
T ss_pred CCcCCHHHhCCCeEEEEecC
Confidence 21111 23477899999874
No 68
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.96 E-value=0.0022 Score=59.23 Aligned_cols=91 Identities=22% Similarity=0.237 Sum_probs=50.9
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcc--cCCCccccccCc-----ccCCC-CCEEEec
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKD-----ADFSN-VDAVFCC 136 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~--~~~~~~~~~~~~-----~~~~~-~DvVF~a 136 (306)
+|.|+||||++|+.+++.|.+. ..++..++.+...... +... ..|+.+.+.+.. ..+.+ +|.||++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~~~~~~~-----~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~ 74 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRSSSSSAG-----PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLV 74 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCCCccccC-----CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEe
Confidence 4899999999999999999864 3567776533221111 1111 123222221210 11245 8999999
Q ss_pred CCccc-----hHHHHHhc-CCCC-eEEECCcc
Q 021865 137 LPHGT-----TQEIIKGL-PKSL-KIVDLSAD 161 (306)
Q Consensus 137 lp~~~-----s~~~~~~l-~~g~-~VIDlSad 161 (306)
.|... ...++.+. +.|+ +||=+|+.
T Consensus 75 ~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~ 106 (285)
T TIGR03649 75 APPIPDLAPPMIKFIDFARSKGVRRFVLLSAS 106 (285)
T ss_pred CCCCCChhHHHHHHHHHHHHcCCCEEEEeecc
Confidence 87432 12344444 4564 67777763
No 69
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.90 E-value=0.00099 Score=53.66 Aligned_cols=85 Identities=24% Similarity=0.469 Sum_probs=55.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcC-CCceEEEEeccccC-CcccccccCCcccCCCccccccCcccC--CCCCEEEecCCc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPH 139 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~H-P~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~--~~~DvVF~alp~ 139 (306)
+||+|||+ |..|...++.+.+. |.++++.+..+... .+...+.+ + .+.+.++ ++.+ .+.|+||.|+|+
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~----~--~~~~~~~-~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY----G--IPVYTDL-EELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT----T--SEEESSH-HHHHHHTTESEEEEESSG
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh----c--ccchhHH-HHHHHhhcCCEEEEecCC
Confidence 68999997 88899999877765 99999988764432 11111111 1 1111111 1111 379999999999
Q ss_pred cchHHHHHh-cCCCCeEE
Q 021865 140 GTTQEIIKG-LPKSLKIV 156 (306)
Q Consensus 140 ~~s~~~~~~-l~~g~~VI 156 (306)
..-.+++.. +++|..|+
T Consensus 73 ~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp GGHHHHHHHHHHTTSEEE
T ss_pred cchHHHHHHHHHcCCEEE
Confidence 888888765 48888665
No 70
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.90 E-value=0.002 Score=62.61 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=30.9
Q ss_pred CccccccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 55 GKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 55 ~~~~~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++..-+.+.+||.|.|||||+|..|++.|.++. .++..+.
T Consensus 13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 13 REPYWPSEKLRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 334444456899999999999999999998763 5676665
No 71
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.88 E-value=0.0018 Score=58.58 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=57.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc-CCccccccc-CCcc--cCCCccccccC-cccCCCCCEEEecCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVF-PHLI--SQDLPTMVAVK-DADFSNVDAVFCCLP 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~-aGk~l~~~~-p~l~--~~~~~~~~~~~-~~~~~~~DvVF~alp 138 (306)
|||+|||++|.+|..|.+.|.+.- .++... +++. .-+.+.+.+ ..+. +.+.. ....+ .+...++|+||+|+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~-~~~~~~~ea~~~aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG-SRDLEKAEEAAAKALEELGHGGSDIK-VTGADNAEAAKRADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE-EcCHHHHHHHHHHHHhhccccCCCce-EEEeChHHHHhcCCEEEEECC
Confidence 589999999999999999998653 455544 3322 111111100 0000 00000 11011 233467999999999
Q ss_pred ccchHHHHHhc---CCCCeEEECCcccccC
Q 021865 139 HGTTQEIIKGL---PKSLKIVDLSADFRLR 165 (306)
Q Consensus 139 ~~~s~~~~~~l---~~g~~VIDlSadfRl~ 165 (306)
.....++++.+ -.+..|||++.-+..+
T Consensus 78 ~~~~~~~l~~l~~~l~~~vvI~~~ngi~~~ 107 (219)
T TIGR01915 78 WDHVLKTLESLRDELSGKLVISPVVPLASD 107 (219)
T ss_pred HHHHHHHHHHHHHhccCCEEEEeccCceec
Confidence 88776665443 1357899998877653
No 72
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.87 E-value=0.0027 Score=59.43 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=87.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCC---CceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP---~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|||++|| .|..|..+++.|.+.. ..++.. ..|+. .+........+ +.. ...+. .+...++|+||+|++..
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v-~~r~~-~~~~~~l~~~~-g~~--~~~~~-~e~~~~aDvVilav~p~ 76 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQITV-SNRSN-ETRLQELHQKY-GVK--GTHNK-KELLTDANILFLAMKPK 76 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEE-ECCCC-HHHHHHHHHhc-Cce--EeCCH-HHHHhcCCEEEEEeCHH
Confidence 5999999 9999999999988654 234443 33322 11111100000 100 01111 12235799999999988
Q ss_pred chHHHHHhc----CCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEE-ecCCChHHHH
Q 021865 141 TTQEIIKGL----PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLV-ANPGCYPTSI 215 (306)
Q Consensus 141 ~s~~~~~~l----~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lV-AnPGCy~Ta~ 215 (306)
...+.+..+ ..+..|||+.+-...+ ..++|.+.. .| .+.++|=..-..-.+..++ .++.|....
T Consensus 77 ~~~~vl~~l~~~~~~~~liIs~~aGi~~~---~l~~~~~~~--~~-----v~r~mPn~~~~~~~~~t~~~~~~~~~~~~- 145 (279)
T PRK07679 77 DVAEALIPFKEYIHNNQLIISLLAGVSTH---SIRNLLQKD--VP-----IIRAMPNTSAAILKSATAISPSKHATAEH- 145 (279)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCCHH---HHHHHcCCC--Ce-----EEEECCCHHHHHhcccEEEeeCCCCCHHH-
Confidence 877766543 4578999986666544 345554321 11 1233331111111222333 444443222
Q ss_pred hhhhhHHHhccCCCCceEEE------EeeeecCccCccc
Q 021865 216 QLPLVPLIQANLIQYRNIII------DAKSGVSGAGRGA 248 (306)
Q Consensus 216 ~LaL~PL~~~~li~~~~iiV------~a~sgvSGAGr~~ 248 (306)
.-.+.+|++. ++ .+++ ++.+|.||.|-+-
T Consensus 146 ~~~v~~l~~~--~G--~~~~v~e~~~~~~~a~~Gsgpa~ 180 (279)
T PRK07679 146 IQTAKALFET--IG--LVSVVEEEDMHAVTALSGSGPAY 180 (279)
T ss_pred HHHHHHHHHh--CC--cEEEeCHHHhhhHHHhhcCHHHH
Confidence 3467888875 34 2334 7888999988764
No 73
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.86 E-value=0.0035 Score=56.68 Aligned_cols=60 Identities=18% Similarity=0.387 Sum_probs=47.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
||++|||++|-.|+-|.+.|.+. .+++. +.++|+||+|+|-....
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g~~v~----------------------------------~~~~DlVilavPv~~~~ 45 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY----------------------------------IKKADHAFLSVPIDAAL 45 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-CCEEE----------------------------------ECCCCEEEEeCCHHHHH
Confidence 58999999999999999998643 22221 14689999999999888
Q ss_pred HHHHhcCCCCeEEECCc
Q 021865 144 EIIKGLPKSLKIVDLSA 160 (306)
Q Consensus 144 ~~~~~l~~g~~VIDlSa 160 (306)
++++.+.. .|+|.++
T Consensus 46 ~~i~~~~~--~v~Dv~S 60 (197)
T PRK06444 46 NYIESYDN--NFVEISS 60 (197)
T ss_pred HHHHHhCC--eEEeccc
Confidence 88877643 5889888
No 74
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.80 E-value=0.0019 Score=62.71 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=43.6
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcc---ccc---ccCCcc--cCCCccccccCcccCCCCCEE
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS---IGS---VFPHLI--SQDLPTMVAVKDADFSNVDAV 133 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~---l~~---~~p~l~--~~~~~~~~~~~~~~~~~~DvV 133 (306)
.+++|+|.|||||+|+.++++|+.+-+- +...+.+...-+. +.+ .-+.+. ..|+.+...+ ...+++||.|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf-~~ai~gcdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-VRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSF-DKAIDGCDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE-EEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchH-HHHHhCCCEE
Confidence 5689999999999999999999987543 5555432222111 111 111111 1233222222 2345799999
Q ss_pred EecC
Q 021865 134 FCCL 137 (306)
Q Consensus 134 F~al 137 (306)
|++.
T Consensus 83 fH~A 86 (327)
T KOG1502|consen 83 FHTA 86 (327)
T ss_pred EEeC
Confidence 9986
No 75
>PLN02256 arogenate dehydrogenase
Probab=96.79 E-value=0.0035 Score=60.11 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=56.2
Q ss_pred cccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccC-CCCCEEEecC
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCL 137 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~-~~~DvVF~al 137 (306)
..++++||+||| .|..|+.+.+.|.+.. .++..+.. +.. ...... + +. ....+. .+.+ .++|+||+|+
T Consensus 32 ~~~~~~kI~IIG-~G~mG~slA~~L~~~G-~~V~~~d~-~~~-~~~a~~---~-gv--~~~~~~-~e~~~~~aDvVilav 100 (304)
T PLN02256 32 EKSRKLKIGIVG-FGNFGQFLAKTFVKQG-HTVLATSR-SDY-SDIAAE---L-GV--SFFRDP-DDFCEEHPDVVLLCT 100 (304)
T ss_pred ccCCCCEEEEEe-eCHHHHHHHHHHHhCC-CEEEEEEC-ccH-HHHHHH---c-CC--eeeCCH-HHHhhCCCCEEEEec
Confidence 344568999999 7999999999998754 46665432 221 111110 1 10 001111 1112 3689999999
Q ss_pred CccchHHHHHhc-----CCCCeEEECCc
Q 021865 138 PHGTTQEIIKGL-----PKSLKIVDLSA 160 (306)
Q Consensus 138 p~~~s~~~~~~l-----~~g~~VIDlSa 160 (306)
|.....++++.+ ..+..|+|.++
T Consensus 101 p~~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 101 SILSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred CHHHHHHHHHhhhhhccCCCCEEEecCC
Confidence 988777766543 35789999988
No 76
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.78 E-value=0.0016 Score=62.12 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=28.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
||||.|.|||||+|+.|++.|++....++..+.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 578999999999999999999876556777765
No 77
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.68 E-value=0.0031 Score=56.88 Aligned_cols=71 Identities=20% Similarity=0.367 Sum_probs=43.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcc--cCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~--~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|||+||||||.+|.++++-..+. ..+++.++. +..|.-. .+.+. ..|+-+...+ .+++.+.|+|+.+-...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivR--n~~K~~~--~~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVR--NASKLAA--RQGVTILQKDIFDLTSL-ASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-CCeeEEEEe--ChHhccc--cccceeecccccChhhh-HhhhcCCceEEEeccCC
Confidence 69999999999999999987743 234777763 2222111 11121 1222222111 25568899999987655
No 78
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.68 E-value=0.0045 Score=58.06 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=53.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
|||+||| .|..|+.+.+.|.++. .++.....+...-+...+ ....+. . ..+.+.+.++|+||+|+|.....
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~----~g~~~~--~-~~~~~~~~~aDlVilavp~~~~~ 71 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIE----RGLVDE--A-STDLSLLKDCDLVILALPIGLLL 71 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH----CCCccc--c-cCCHhHhcCCCEEEEcCCHHHHH
Confidence 4899999 8999999999998653 455554322111111110 000000 0 01122346899999999987776
Q ss_pred HHHHh----cCCCCeEEECCc
Q 021865 144 EIIKG----LPKSLKIVDLSA 160 (306)
Q Consensus 144 ~~~~~----l~~g~~VIDlSa 160 (306)
++.+. +..++.|+|.++
T Consensus 72 ~~~~~l~~~l~~~~ii~d~~S 92 (279)
T PRK07417 72 PPSEQLIPALPPEAIVTDVGS 92 (279)
T ss_pred HHHHHHHHhCCCCcEEEeCcc
Confidence 65543 355788999887
No 79
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.66 E-value=0.0039 Score=62.56 Aligned_cols=89 Identities=20% Similarity=0.376 Sum_probs=54.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
|||+|+|++|..|+.+.+.|.+.. .++.....+......+... + +... ..+. .+.+.++|+||+|+|.....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~r~~~~~~~~a~~---~-gv~~--~~~~-~e~~~~aDvVIlavp~~~~~ 72 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTGRDPKKGKEVAKE---L-GVEY--ANDN-IDAAKDADIVIISVPINVTE 72 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEECChHHHHHHHHH---c-CCee--ccCH-HHHhccCCEEEEecCHHHHH
Confidence 589999999999999999998643 3554443221111111110 0 1000 0011 12346799999999987766
Q ss_pred HHHHh----cCCCCeEEECCc
Q 021865 144 EIIKG----LPKSLKIVDLSA 160 (306)
Q Consensus 144 ~~~~~----l~~g~~VIDlSa 160 (306)
+++.. +..+..|+|.++
T Consensus 73 ~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 73 DVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHHHHhhCCCCCEEEEccc
Confidence 55543 456899999997
No 80
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.65 E-value=0.0029 Score=59.55 Aligned_cols=86 Identities=22% Similarity=0.390 Sum_probs=48.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccC--CCCCEEEecCCcc-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHG- 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~--~~~DvVF~alp~~- 140 (306)
|||.|+||||++|+.|.+.|.. ...++... ++.. + |+.+.+.+. ..+ .+.|+|+.|..-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~-----------~---dl~d~~~~~-~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD-----------L---DLTDPEAVA-KLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC-----------S----TTSHHHHH-HHHHHH--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh-----------c---CCCCHHHHH-HHHHHhCCCeEeccceeec
Confidence 7999999999999999999987 33555555 3331 1 111111111 111 2579999997421
Q ss_pred ---------ch--------HHHHHhc-CCCCeEEECCcccccCC
Q 021865 141 ---------TT--------QEIIKGL-PKSLKIVDLSADFRLRD 166 (306)
Q Consensus 141 ---------~s--------~~~~~~l-~~g~~VIDlSadfRl~~ 166 (306)
.+ ..++... ..|+++|=+|.|+=|+.
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDG 107 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcC
Confidence 11 1222333 46899999999999975
No 81
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=96.61 E-value=0.0046 Score=64.81 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=33.5
Q ss_pred cCccccccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 54 DGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 54 ~~~~~~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+.+-+..+++||.|.|||||+|+.|++.|+++-..+++.+.
T Consensus 306 ~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 306 SKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred ccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 333444556789999999999999999999987567888775
No 82
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.59 E-value=0.0032 Score=57.25 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=62.5
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCC--CceEEEEecccc--CCcccccccCCcccCCCccccccCcccCCCCCEEEec
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP--~~el~~l~S~~~--aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~a 136 (306)
++.+||+||| +|..|..+++.|.++. .++...+..++. ..+.+.+.+. .. ...+. .+.++++|+||+|
T Consensus 2 m~~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-----~~~~~-~~~~~~~DiViia 73 (245)
T PRK07634 2 LKKHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN-VS-----TTTDW-KQHVTSVDTIVLA 73 (245)
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC-cE-----EeCCh-HHHHhcCCEEEEe
Confidence 3457999999 6999999999887543 444233333322 1122221111 10 01111 1224679999999
Q ss_pred CCccchHHHHHhcC---CCCeEEECCcccccCCccchhhhcC
Q 021865 137 LPHGTTQEIIKGLP---KSLKIVDLSADFRLRDVSEYEEWYG 175 (306)
Q Consensus 137 lp~~~s~~~~~~l~---~g~~VIDlSadfRl~~~~~y~~wY~ 175 (306)
+|...-.++...+. .+..||..++-..++. .++|.+
T Consensus 74 vp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~---l~~~~~ 112 (245)
T PRK07634 74 MPPSAHEELLAELSPLLSNQLVVTVAAGIGPSY---LEERLP 112 (245)
T ss_pred cCHHHHHHHHHHHHhhccCCEEEEECCCCCHHH---HHHHcC
Confidence 99887777665441 3568999998877653 566643
No 83
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.59 E-value=0.0022 Score=57.92 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=44.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCc--ccCCCccccccCcccCCCCCEEEecCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHL--ISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l--~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
++|.|+||||++|+.+++.|.++ ..+++.++.+...-.... +.+ ...++.+...+ ...+.++|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l-~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSL-VAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHH-HHHhccccEEEEEec
Confidence 57999999999999999999988 667777765433322222 111 11222222111 223468899988887
No 84
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.59 E-value=0.0054 Score=58.74 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=44.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccCCcccccccC---Cc--ccCCCccccc-cCcccCCCCCEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFP---HL--ISQDLPTMVA-VKDADFSNVDAVFCC 136 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~~~~p---~l--~~~~~~~~~~-~~~~~~~~~DvVF~a 136 (306)
|||+|+||||++|..++..|+..+.. +++++.......+.-....+ .+ .+.+. .+.. .+.+++.++|+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i~~~~d~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EIKISSDLSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc-EEEECCCHHHhCCCCEEEEe
Confidence 68999999999999999999987665 57776542222222111111 00 00010 1111 123446899999999
Q ss_pred CC
Q 021865 137 LP 138 (306)
Q Consensus 137 lp 138 (306)
.+
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 87
No 85
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.58 E-value=0.017 Score=49.83 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=29.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
+||+|+|. |-+|+.+++.+.++|+++++.+..
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d 32 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAIND 32 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeec
Confidence 58999998 999999999999999999998765
No 86
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.56 E-value=0.0035 Score=57.09 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=27.5
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..+++|.|+||||++|+.|++.|++. ..++..++
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~ 48 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAK-GFAVKAGV 48 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhC-CCEEEEEe
Confidence 33579999999999999999999875 35666664
No 87
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.55 E-value=0.0018 Score=50.43 Aligned_cols=89 Identities=13% Similarity=0.276 Sum_probs=53.6
Q ss_pred EEEEEccccHHHHHHHHHHhcCC--CceEEEEeccccCC-cccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP--~~el~~l~S~~~aG-k~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
||+||| +|-.|..|++.|.++. ..++...++++... +.+.+.++. .. ...-..+.++++|+||+|.|...
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~----~~--~~~~~~~~~~~advvilav~p~~ 73 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGV----QA--TADDNEEAAQEADVVILAVKPQQ 73 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTT----EE--ESEEHHHHHHHTSEEEE-S-GGG
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcc----cc--ccCChHHhhccCCEEEEEECHHH
Confidence 799996 8999999999988654 34555454443221 122222220 00 00000222357999999999988
Q ss_pred hHHHHHhc---CCCCeEEECCc
Q 021865 142 TQEIIKGL---PKSLKIVDLSA 160 (306)
Q Consensus 142 s~~~~~~l---~~g~~VIDlSa 160 (306)
..++...+ .++..|||..+
T Consensus 74 ~~~v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 74 LPEVLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHHHHHHTTSEEEEEST
T ss_pred HHHHHHHHhhccCCCEEEEeCC
Confidence 88877654 46889999764
No 88
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.53 E-value=0.0052 Score=58.71 Aligned_cols=101 Identities=19% Similarity=0.356 Sum_probs=60.1
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCC---cccCCCcc-cccc-Cc-ccCCCCCEEE
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH---LISQDLPT-MVAV-KD-ADFSNVDAVF 134 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~---l~~~~~~~-~~~~-~~-~~~~~~DvVF 134 (306)
+.+|||+||| .|-.|.-+...|.+.- .++..+..+...-+.+...... +.+..++. +... +. +...++|+||
T Consensus 2 ~~~m~I~iIG-~G~mG~~ia~~L~~~G-~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi 79 (328)
T PRK14618 2 HHGMRVAVLG-AGAWGTALAVLAASKG-VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAV 79 (328)
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEE
Confidence 3467999999 6999999999998542 3455554322222222221100 00101000 1111 11 2246799999
Q ss_pred ecCCccchHHHHHhcCCCCeEEECCcccc
Q 021865 135 CCLPHGTTQEIIKGLPKSLKIVDLSADFR 163 (306)
Q Consensus 135 ~alp~~~s~~~~~~l~~g~~VIDlSadfR 163 (306)
+|+|.....++.+.+..+..+||++.-+-
T Consensus 80 ~~v~~~~~~~v~~~l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 80 VAVPSKALRETLAGLPRALGYVSCAKGLA 108 (328)
T ss_pred EECchHHHHHHHHhcCcCCEEEEEeeccc
Confidence 99999877777777777889999877443
No 89
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=96.52 E-value=0.0089 Score=59.89 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=26.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.|||.|.|||||+|+.|++.|++. ..+++.+.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ld 151 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGR-GDEVIVID 151 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence 378999999999999999999875 34666664
No 90
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.50 E-value=0.0035 Score=58.22 Aligned_cols=73 Identities=16% Similarity=0.359 Sum_probs=40.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
++|.|+||||++|+.|++.|.++. .++..+..+......+....-.+...|+.+...+ .+.+.++|+||.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l-~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASL-RKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEecCccccccccCCceEEEeeCCCHHHH-HHHHhCCCEEEEece
Confidence 479999999999999999998765 4666665332211111110000111222222112 122457899998874
No 91
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.47 E-value=0.0059 Score=57.31 Aligned_cols=89 Identities=16% Similarity=0.279 Sum_probs=52.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc-CCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~-aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
++||+||| .|..|..+.+.|.++ ..++... .++. .-+.+.+ . + ....... .+.+.++|+||+|+|...
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~-g~~v~~~-d~~~~~~~~~~~----~-g--~~~~~~~-~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKA-GYSLVVY-DRNPEAVAEVIA----A-G--AETASTA-KAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHC-CCeEEEE-cCCHHHHHHHHH----C-C--CeecCCH-HHHHhcCCEEEEeCCCHH
Confidence 57899999 799999999999864 3455443 3221 1111110 0 1 0001111 223367999999999665
Q ss_pred hHH-HH-------HhcCCCCeEEECCccc
Q 021865 142 TQE-II-------KGLPKSLKIVDLSADF 162 (306)
Q Consensus 142 s~~-~~-------~~l~~g~~VIDlSadf 162 (306)
..+ .. +.+..|..|||.|...
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCC
Confidence 433 22 2345688999998754
No 92
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0061 Score=57.62 Aligned_cols=163 Identities=17% Similarity=0.281 Sum_probs=97.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCc--eEEEEeccccCCcc--cccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYF--GIKLMTADRKAGQS--IGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~--el~~l~S~~~aGk~--l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
|+||++|| .|-.|+.+++-|.+...+ +-+.++. +...+. +.+.|+... .....+...++|+||+|..
T Consensus 1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~~~~I~v~~-~~~e~~~~l~~~~g~~~-------~~~~~~~~~~advv~LavK 71 (266)
T COG0345 1 MMKIGFIG-AGNMGEAILSGLLKSGALPPEEIIVTN-RSEEKRAALAAEYGVVT-------TTDNQEAVEEADVVFLAVK 71 (266)
T ss_pred CceEEEEc-cCHHHHHHHHHHHhcCCCCcceEEEeC-CCHHHHHHHHHHcCCcc-------cCcHHHHHhhCCEEEEEeC
Confidence 57999999 799999999999876632 2333433 333222 333332211 0101122367999999998
Q ss_pred ccchHHHHHhcC---CCCeEEECCcccccCCccchhhhcCCCCC----CcchhhhhhhcccccchhcccCCcEEecCCCh
Q 021865 139 HGTTQEIIKGLP---KSLKIVDLSADFRLRDVSEYEEWYGQPHI----APDLQKEAVYGLTEISREDIKNARLVANPGCY 211 (306)
Q Consensus 139 ~~~s~~~~~~l~---~g~~VIDlSadfRl~~~~~y~~wY~~~h~----~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy 211 (306)
.-...+..+.+. ++..||...+--+++. +++|.+ ... .|......-.|. .-+..|..|.
T Consensus 72 Pq~~~~vl~~l~~~~~~~lvISiaAGv~~~~---l~~~l~-~~~vvR~MPNt~a~vg~g~----------t~i~~~~~~~ 137 (266)
T COG0345 72 PQDLEEVLSKLKPLTKDKLVISIAAGVSIET---LERLLG-GLRVVRVMPNTPALVGAGV----------TAISANANVS 137 (266)
T ss_pred hHhHHHHHHHhhcccCCCEEEEEeCCCCHHH---HHHHcC-CCceEEeCCChHHHHcCcc----------eeeecCccCC
Confidence 877777777663 6889999999888754 688876 222 254333221111 2456677887
Q ss_pred HHHHhhhhhHHHhccCC-CCceEEEEeeeecCccCccc
Q 021865 212 PTSIQLPLVPLIQANLI-QYRNIIIDAKSGVSGAGRGA 248 (306)
Q Consensus 212 ~Ta~~LaL~PL~~~~li-~~~~iiV~a~sgvSGAGr~~ 248 (306)
..-...+..=|-.-|-. ..+.-.+|+.+++||.|=+=
T Consensus 138 ~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAy 175 (266)
T COG0345 138 EEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAY 175 (266)
T ss_pred HHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHH
Confidence 66654433323222211 11233579999999998543
No 93
>PLN02206 UDP-glucuronate decarboxylase
Probab=96.39 E-value=0.01 Score=59.48 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.6
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.+||.|.|||||+|+.|++.|.+. ..+++.+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMAR-GDSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHC-cCEEEEEe
Confidence 3478999999999999999999876 34566553
No 94
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.38 E-value=0.0021 Score=55.57 Aligned_cols=91 Identities=19% Similarity=0.375 Sum_probs=49.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
|+||++|| .|-.|..+.+.|.++- +++...-.++..-+.+.+. + ....... .+..+++|+||+|+|++.+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~-----g--~~~~~s~-~e~~~~~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAG-YEVTVYDRSPEKAEALAEA-----G--AEVADSP-AEAAEQADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTT-TEEEEEESSHHHHHHHHHT-----T--EEEESSH-HHHHHHBSEEEE-SSSHHH
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcC-CeEEeeccchhhhhhhHHh-----h--hhhhhhh-hhHhhcccceEeecccchh
Confidence 78999999 5999999999998653 4555443222111111110 0 0001111 1223568999999998766
Q ss_pred -HHHHH------hcCCCCeEEECCcccc
Q 021865 143 -QEIIK------GLPKSLKIVDLSADFR 163 (306)
Q Consensus 143 -~~~~~------~l~~g~~VIDlSadfR 163 (306)
.++.. .+..|..|||+|...-
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--H
T ss_pred hhhhhhhhHHhhccccceEEEecCCcch
Confidence 34433 2457899999987543
No 95
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.35 E-value=0.0046 Score=60.84 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=28.8
Q ss_pred cccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++.+++||.|+||||++|+.+++.|.+. ..+++.+.
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~ 91 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVA 91 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEE
Confidence 3445679999999999999999999875 35676665
No 96
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.012 Score=56.02 Aligned_cols=94 Identities=24% Similarity=0.301 Sum_probs=56.8
Q ss_pred CccEEEEEccccHHHHHHHHHHhc-CCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~-HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
.+++|+|+| .|.+|+.+.+.|.. +..+.+.-. +++.+....... +...+- .......+...++|+||+|.|-.
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~g~--d~~~~~~~~a~~--lgv~d~-~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAGLVVRIIGR--DRSAATLKAALE--LGVIDE-LTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcCCeEEEEee--cCcHHHHHHHhh--cCcccc-cccchhhhhcccCCEEEEeccHH
Confidence 467899999 99999999999984 555444333 222221111100 100000 00111012335689999999988
Q ss_pred chHHHHHhc----CCCCeEEECCcc
Q 021865 141 TTQEIIKGL----PKSLKIVDLSAD 161 (306)
Q Consensus 141 ~s~~~~~~l----~~g~~VIDlSad 161 (306)
.+.++++.+ ..|+.|.|.++-
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~ 100 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSV 100 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccc
Confidence 887777554 469999998874
No 97
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.35 E-value=0.0076 Score=57.47 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=57.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc-
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~- 141 (306)
..||+|+|+ |-+|+.+++.|.++. .++..+..+...-....+ + +.....+.++ .+.+.++|+||.|+|...
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~----~-G~~~~~~~~l-~~~l~~aDiVI~t~p~~~i 223 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALG-ANVTVGARKSAHLARITE----M-GLSPFHLSEL-AEEVGKIDIIFNTIPALVL 223 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH----c-CCeeecHHHH-HHHhCCCCEEEECCChhhh
Confidence 368999996 889999999999775 466555332211111111 1 1000011111 233468999999999763
Q ss_pred hHHHHHhcCCCCeEEECCccc
Q 021865 142 TQEIIKGLPKSLKIVDLSADF 162 (306)
Q Consensus 142 s~~~~~~l~~g~~VIDlSadf 162 (306)
..+....+..+..|||++.+-
T Consensus 224 ~~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 224 TKEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred hHHHHHcCCCCcEEEEEccCC
Confidence 355666677899999998754
No 98
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.34 E-value=0.0061 Score=56.28 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=59.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCC--CceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP--~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
+|+||+||| .|..|..+.+.|.+.. ..++..+ .++.. -+.+.+.+ +... ..+. .+.+.++|+||+|+|
T Consensus 1 ~mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~-~r~~~~~~~~~~~~----g~~~--~~~~-~~~~~~advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVS-DPSPEKRAALAEEY----GVRA--ATDN-QEAAQEADVVVLAVK 71 (267)
T ss_pred CCCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEE-cCCHHHHHHHHHhc----CCee--cCCh-HHHHhcCCEEEEEcC
Confidence 478999999 5999999999887542 2334333 33221 11111111 1000 1111 122367999999999
Q ss_pred ccchHHHHHhcCC--CCeEEECCcccccCCccchhhhcC
Q 021865 139 HGTTQEIIKGLPK--SLKIVDLSADFRLRDVSEYEEWYG 175 (306)
Q Consensus 139 ~~~s~~~~~~l~~--g~~VIDlSadfRl~~~~~y~~wY~ 175 (306)
.....++++.+.. +..||.+++.... +..++|++
T Consensus 72 ~~~~~~v~~~l~~~~~~~vvs~~~gi~~---~~l~~~~~ 107 (267)
T PRK11880 72 PQVMEEVLSELKGQLDKLVVSIAAGVTL---ARLERLLG 107 (267)
T ss_pred HHHHHHHHHHHHhhcCCEEEEecCCCCH---HHHHHhcC
Confidence 8877777765521 5678888876643 34556654
No 99
>PLN00016 RNA-binding protein; Provisional
Probab=96.32 E-value=0.008 Score=58.37 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=57.7
Q ss_pred ccccccCccEEEEE----ccccHHHHHHHHHHhcCCCceEEEEeccccCCccccc----ccCC-----cc--cCCCcccc
Q 021865 56 KTQKSEKQVRIGLL----GASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS----VFPH-----LI--SQDLPTMV 120 (306)
Q Consensus 56 ~~~~~~~~~kVaIi----GATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~----~~p~-----l~--~~~~~~~~ 120 (306)
.+.+..+++||.|+ ||||++|+.|++.|.+.. .+++.++.+......+.. .+.. +. ..|+.++.
T Consensus 45 ~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~ 123 (378)
T PLN00016 45 AAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVK 123 (378)
T ss_pred hhhcccccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHH
Confidence 44455556789999 999999999999998653 577777643322111110 0001 10 01221111
Q ss_pred ccCcccCCCCCEEEecCCccc--hHHHHHhc-CCCC-eEEECCccc
Q 021865 121 AVKDADFSNVDAVFCCLPHGT--TQEIIKGL-PKSL-KIVDLSADF 162 (306)
Q Consensus 121 ~~~~~~~~~~DvVF~alp~~~--s~~~~~~l-~~g~-~VIDlSadf 162 (306)
.. ....++|+||.+.+... ...++.++ +.|+ ++|=+|+..
T Consensus 124 ~~--~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~ 167 (378)
T PLN00016 124 SK--VAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAG 167 (378)
T ss_pred hh--hccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHh
Confidence 10 11246899999875432 24455555 4565 677666643
No 100
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.31 E-value=0.0095 Score=57.59 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=43.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCc------eEEEEecccc----CCccccccc---CCcccCCCccccccC-cccCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYF------GIKLMTADRK----AGQSIGSVF---PHLISQDLPTMVAVK-DADFS 128 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~------el~~l~S~~~----aGk~l~~~~---p~l~~~~~~~~~~~~-~~~~~ 128 (306)
..||+|+||+|++|+.++..|...+-+ +++++..... .|..+.-.+ |.. . +.. . .-+ .++++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~-~-~~~-~-~~~~~~~l~ 77 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLL-K-SVV-A-TTDPEEAFK 77 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhcccccc-C-Cce-e-cCCHHHHhC
Confidence 478999999999999999999875543 7777753222 222211111 111 1 110 0 111 25568
Q ss_pred CCCEEEecCCc
Q 021865 129 NVDAVFCCLPH 139 (306)
Q Consensus 129 ~~DvVF~alp~ 139 (306)
++|+||.+.+.
T Consensus 78 ~aDiVI~tAG~ 88 (325)
T cd01336 78 DVDVAILVGAM 88 (325)
T ss_pred CCCEEEEeCCc
Confidence 99999988754
No 101
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.30 E-value=0.01 Score=54.29 Aligned_cols=90 Identities=13% Similarity=0.244 Sum_probs=54.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCC-ccc-ccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSI-GSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aG-k~l-~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
||+++|+| ||-+|..|.+.|..-- .|++.-.++...- +.. ....|.+.+.. . +++.+.+|+||++.|-.
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag-~eV~igs~r~~~~~~a~a~~l~~~i~~~~------~-~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAG-HEVIIGSSRGPKALAAAAAALGPLITGGS------N-EDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCC-CeEEEecCCChhHHHHHHHhhccccccCC------h-HHHHhcCCEEEEeccHH
Confidence 56777766 9999999999998532 3455543332211 111 11222221111 1 23346799999999987
Q ss_pred chHHHHHhcC---CCCeEEECCcc
Q 021865 141 TTQEIIKGLP---KSLKIVDLSAD 161 (306)
Q Consensus 141 ~s~~~~~~l~---~g~~VIDlSad 161 (306)
.-....+.+. .|..|||.+--
T Consensus 72 a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 72 AIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred HHHhHHHHHHHHhCCeEEEecCCC
Confidence 7777776552 37899997763
No 102
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=96.28 E-value=0.092 Score=51.73 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=114.6
Q ss_pred CccEEEEEccccHHHHHHHHHHhcC----CCceEEEEeccc-cCCc-----ccccccCCccc------------------
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANH----PYFGIKLMTADR-KAGQ-----SIGSVFPHLIS------------------ 113 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~H----P~~el~~l~S~~-~aGk-----~l~~~~p~l~~------------------ 113 (306)
+++||||=| -|=+|+.++|.+.+. ++++++.+-... .... ++...|..+..
T Consensus 2 m~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 347999988 899999999998754 678888874311 1111 11123332210
Q ss_pred ---CCCccc-cccCccc--C--CCCCEEEecCCccchHHHHH-hcCCC-CeEEECCcccccCCccchhhhcCCCCCCcch
Q 021865 114 ---QDLPTM-VAVKDAD--F--SNVDAVFCCLPHGTTQEIIK-GLPKS-LKIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183 (306)
Q Consensus 114 ---~~~~~~-~~~~~~~--~--~~~DvVF~alp~~~s~~~~~-~l~~g-~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel 183 (306)
.....+ .+-++.+ | .++|+|+-|++.-.+++-+. -+++| .+|| +|+- .++. +
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVi-iSAP--~~d~---------~------ 142 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVV-ISAP--ASGG---------A------ 142 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEE-ECCC--CCCC---------C------
Confidence 000011 1112222 2 27899999998777776554 35555 4555 4543 1220 0
Q ss_pred hhhhhhcccccchhcccC--CcEEecCCChHHHHhhhhhHH-HhccCCCCceEEEEeeeecCccCcccccccc------H
Q 021865 184 QKEAVYGLTEISREDIKN--ARLVANPGCYPTSIQLPLVPL-IQANLIQYRNIIIDAKSGVSGAGRGAKEANL------Y 254 (306)
Q Consensus 184 ~~~avYGLpEl~r~~i~~--a~lVAnPGCy~Ta~~LaL~PL-~~~~li~~~~iiV~a~sgvSGAGr~~~~~~~------~ 254 (306)
.-.||| .|.+.+.. .++|+|.-|.+.++.-.++-| .++ ++++.-.++|.=+++.-= +..+..+ -
T Consensus 143 -~t~V~G---VN~~~y~~~~~~IiSnASCTTNcLAP~~kvL~~~~--fGI~~g~mTTVHayT~~Q-~~~D~~~~kD~Rr~ 215 (361)
T PTZ00434 143 -KTIVMG---VNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEG--FGIETGLMTTIHSYTATQ-KTVDGVSVKDWRGG 215 (361)
T ss_pred -ceEEEc---CChHHcCcccCcEEECCChHHHhhHHHHHHhhcCC--cceEEEEEEEEecccCCc-ccccCcCccccccc
Confidence 113676 35555543 479999999888877777777 343 455555566655555431 1111111 1
Q ss_pred HHHhcCceeecCCCCCchhHHHHHhhcccCCcceEEEEeeeecccccc
Q 021865 255 SEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMVTVS 302 (306)
Q Consensus 255 ~e~~~n~~~Y~~~~HrH~pEI~q~L~~~~~~~~~v~FtphlvP~~RGi 302 (306)
.....|+.|..-+..+-+..+-=+| .| +++=...+||+.-|-
T Consensus 216 Raaa~nIIPtsTGAAkAv~~VlP~L---~G---Kl~G~a~RVPt~nvS 257 (361)
T PTZ00434 216 RAAAVNIIPSTTGAAKAVGMVIPST---KG---KLTGMSFRVPTPDVS 257 (361)
T ss_pred ccccccCccCCcchhhhhceecccc---CC---ceeeEEEecccCcEe
Confidence 2356788898887655333332223 22 245555577776553
No 103
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.28 E-value=0.006 Score=58.51 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=27.3
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+++||.|.|||||+|+.|++.|.+.. .+++.+.
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d 46 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN-QTVIGLD 46 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 45789999999999999999999764 4666664
No 104
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.28 E-value=0.013 Score=55.60 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=53.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCC-ceEEEEeccccCC-cccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~-~el~~l~S~~~aG-k~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
.+||+||| .|.+|..+.+.|..... .++..+ .++..- +...+ . +......... .+.+.++|+||+|+|..
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~-dr~~~~~~~a~~----~-g~~~~~~~~~-~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAGEIVGA-DRSAETRARARE----L-GLGDRVTTSA-AEAVKGADLVILCVPVG 77 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEE-ECCHHHHHHHHh----C-CCCceecCCH-HHHhcCCCEEEECCCHH
Confidence 36899999 99999999999986543 345444 332210 11110 0 1000001111 22346899999999987
Q ss_pred chHHHHH----hcCCCCeEEECCcc
Q 021865 141 TTQEIIK----GLPKSLKIVDLSAD 161 (306)
Q Consensus 141 ~s~~~~~----~l~~g~~VIDlSad 161 (306)
...++.. .+..+..|+|.++.
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccc
Confidence 6655443 34567889998763
No 105
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.27 E-value=0.012 Score=58.59 Aligned_cols=96 Identities=20% Similarity=0.161 Sum_probs=52.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccc-----ccCCcccC-----CCccccccCcccCCCCCE
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-----VFPHLISQ-----DLPTMVAVKDADFSNVDA 132 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~-----~~p~l~~~-----~~~~~~~~~~~~~~~~Dv 132 (306)
++||+||| .||+|.-+...|.++- .++..+-.+...=+.+.. .-|.+... ..-.+... .+.+++|+
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~--~~~~~aDv 78 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT--TTPEPADA 78 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee--cccccCCE
Confidence 58999999 7999999999998753 455555321111111110 01111000 00000000 12347999
Q ss_pred EEecCCccc---------h-----HHHHHhcCCCCeEEECCccc
Q 021865 133 VFCCLPHGT---------T-----QEIIKGLPKSLKIVDLSADF 162 (306)
Q Consensus 133 VF~alp~~~---------s-----~~~~~~l~~g~~VIDlSadf 162 (306)
||+|+|... . ..+.+.+.+|..||+.|.-.
T Consensus 79 vii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred EEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 999999851 1 22334456789999988733
No 106
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.24 E-value=0.0034 Score=53.40 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=43.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccc--cCCcccc--cccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIG--SVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~--~aGk~l~--~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
+||+|+||+|.+|+.+.-.|...+-. |++++-... ..|..+. +.-+... .+. .+..-+.+++.++|+|+++.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-~~~-~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-SPV-RITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-EEE-EEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-ccc-ccccccccccccccEEEEecc
Confidence 69999999999999999999877665 576665432 2222111 1100010 000 111122455688999998875
Q ss_pred c
Q 021865 139 H 139 (306)
Q Consensus 139 ~ 139 (306)
.
T Consensus 79 ~ 79 (141)
T PF00056_consen 79 V 79 (141)
T ss_dssp T
T ss_pred c
Confidence 3
No 107
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.24 E-value=0.012 Score=55.40 Aligned_cols=100 Identities=23% Similarity=0.378 Sum_probs=55.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccccc--CC-cccCCCc-cccc-cCc-ccCCCCCEEEec
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF--PH-LISQDLP-TMVA-VKD-ADFSNVDAVFCC 136 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~--p~-l~~~~~~-~~~~-~~~-~~~~~~DvVF~a 136 (306)
|+||+|+| .|..|..+...|.+. ..++..+......-+.+.... +. +...... .... .+. +.+.++|+||+|
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARN-GHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 57999999 599999999999864 234544432221111111110 00 0000000 0100 111 233689999999
Q ss_pred CCccchHHHHHh----cCCCCeEEECCccccc
Q 021865 137 LPHGTTQEIIKG----LPKSLKIVDLSADFRL 164 (306)
Q Consensus 137 lp~~~s~~~~~~----l~~g~~VIDlSadfRl 164 (306)
+|.....++... +..+..|||++.-+-.
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 998655555443 3457889999855543
No 108
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.23 E-value=0.0086 Score=56.93 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=56.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc-h
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~-s 142 (306)
.+|+|+|+ |.+|+.+.+.|..+- .++.... |+.. + ..... .. +.......++ .+.+.++|+||.|+|... .
T Consensus 152 k~v~IiG~-G~iG~avA~~L~~~G-~~V~v~~-R~~~-~-~~~~~-~~-g~~~~~~~~l-~~~l~~aDiVint~P~~ii~ 223 (287)
T TIGR02853 152 SNVMVLGF-GRTGMTIARTFSALG-ARVFVGA-RSSA-D-LARIT-EM-GLIPFPLNKL-EEKVAEIDIVINTIPALVLT 223 (287)
T ss_pred CEEEEEcC-hHHHHHHHHHHHHCC-CEEEEEe-CCHH-H-HHHHH-HC-CCeeecHHHH-HHHhccCCEEEECCChHHhC
Confidence 58999996 889999999999775 4665543 3221 1 11000 00 0000001112 223468999999999775 3
Q ss_pred HHHHHhcCCCCeEEECCcccc
Q 021865 143 QEIIKGLPKSLKIVDLSADFR 163 (306)
Q Consensus 143 ~~~~~~l~~g~~VIDlSadfR 163 (306)
.+....+..+..|||++.+=.
T Consensus 224 ~~~l~~~k~~aliIDlas~Pg 244 (287)
T TIGR02853 224 ADVLSKLPKHAVIIDLASKPG 244 (287)
T ss_pred HHHHhcCCCCeEEEEeCcCCC
Confidence 455566777899999998543
No 109
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.19 E-value=0.0064 Score=56.75 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++|.|.|||||+|+.|++.|+++. .+++.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 689999999999999999998763 3565554
No 110
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.19 E-value=0.0068 Score=60.09 Aligned_cols=94 Identities=16% Similarity=0.289 Sum_probs=56.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCC-CceEEEEeccccCCcc---cccccCCccc-CCC----------c-----cc---
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAGQS---IGSVFPHLIS-QDL----------P-----TM--- 119 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~S~~~aGk~---l~~~~p~l~~-~~~----------~-----~~--- 119 (306)
|.||+|+|+||-+|..-++.+.+|| .++++.++..+...+. ..+..|.+.. .+. . .+
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 5789999999999999999999988 6799999754444321 1222233210 000 0 00
Q ss_pred cccC-cccCCCCCEEEecCCccchHH-HHHhcCCCCeEE
Q 021865 120 VAVK-DADFSNVDAVFCCLPHGTTQE-IIKGLPKSLKIV 156 (306)
Q Consensus 120 ~~~~-~~~~~~~DvVF~alp~~~s~~-~~~~l~~g~~VI 156 (306)
+.+. ..+..++|+|+.+.+.....+ ...++++|..|.
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va 119 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA 119 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence 0000 011146899999998655544 445667777665
No 111
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.10 E-value=0.015 Score=55.06 Aligned_cols=93 Identities=23% Similarity=0.363 Sum_probs=54.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
|||+||| .|..|..+.+.|.++ ..++.....+...-+.+.+. .........++ .+.+.++|+||+|+|++...
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~-g~~V~~~dr~~~~~~~l~~~----g~~~~~s~~~~-~~~~~~~dvIi~~vp~~~~~ 73 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKR-GHDCVGYDHDQDAVKAMKED----RTTGVANLREL-SQRLSAPRVVWVMVPHGIVD 73 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----CCcccCCHHHH-HhhcCCCCEEEEEcCchHHH
Confidence 4899999 699999999999865 35565543222111111110 00000111111 11235689999999998555
Q ss_pred HHH----HhcCCCCeEEECCcccc
Q 021865 144 EII----KGLPKSLKIVDLSADFR 163 (306)
Q Consensus 144 ~~~----~~l~~g~~VIDlSadfR 163 (306)
++. +.+..|..|||.|...-
T Consensus 74 ~v~~~l~~~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 74 AVLEELAPTLEKGDIVIDGGNSYY 97 (298)
T ss_pred HHHHHHHhhCCCCCEEEECCCCCc
Confidence 544 34567889999987653
No 112
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=96.09 E-value=0.0085 Score=56.34 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=26.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
++|.|.||||++|+.|++.|+++. .+++.+..
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 589999999999999999998764 45655543
No 113
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.07 E-value=0.015 Score=54.65 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=51.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCC--CCCEEEecCCcc-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLPHG- 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~--~~DvVF~alp~~- 140 (306)
|||.|.||+||+|+.|++.|.+.. +++.+. ++.. .+ ..|+.+.+.+ ...++ +.|+||.|....
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~-~~~~---------~~-~~Dl~d~~~~-~~~~~~~~~D~Vih~Aa~~~ 66 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALD-VHST---------DY-CGDFSNPEGV-AETVRKIRPDVIVNAAAHTA 66 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEec-cccc---------cc-cCCCCCHHHH-HHHHHhcCCCEEEECCccCC
Confidence 489999999999999999998765 444443 2211 01 1133222222 11122 579999876421
Q ss_pred c-----------------hHHHHHhc-CCCCeEEECCcccccCC
Q 021865 141 T-----------------TQEIIKGL-PKSLKIVDLSADFRLRD 166 (306)
Q Consensus 141 ~-----------------s~~~~~~l-~~g~~VIDlSadfRl~~ 166 (306)
+ +..++.+. ..|.++|=.|+++-+..
T Consensus 67 ~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~ 110 (299)
T PRK09987 67 VDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPG 110 (299)
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECC
Confidence 1 01122333 34788998898876654
No 114
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.02 E-value=0.0096 Score=54.99 Aligned_cols=102 Identities=19% Similarity=0.344 Sum_probs=60.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCC-CceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
|||+||| +|..|+.+++-|.+.. ..+.+.+..++.. -+.+.+.++... ...+. .+...++|+||+|++...
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~-----~~~~~-~~~~~~aDvVilav~p~~ 73 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVR-----IAKDN-QAVVDRSDVVFLAVRPQI 73 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCce-----EeCCH-HHHHHhCCEEEEEeCHHH
Confidence 4799999 9999999999888543 2222334333211 112222121111 01111 112357999999999876
Q ss_pred hHHHHHhc--CCCCeEEECCcccccCCccchhhhcC
Q 021865 142 TQEIIKGL--PKSLKIVDLSADFRLRDVSEYEEWYG 175 (306)
Q Consensus 142 s~~~~~~l--~~g~~VIDlSadfRl~~~~~y~~wY~ 175 (306)
..++.+.+ .++..||+.++....+. +++|.+
T Consensus 74 ~~~vl~~l~~~~~~~vis~~ag~~~~~---l~~~~~ 106 (258)
T PRK06476 74 AEEVLRALRFRPGQTVISVIAATDRAA---LLEWIG 106 (258)
T ss_pred HHHHHHHhccCCCCEEEEECCCCCHHH---HHHHhC
Confidence 77776655 45788999888776654 455543
No 115
>PRK07680 late competence protein ComER; Validated
Probab=95.98 E-value=0.011 Score=55.23 Aligned_cols=102 Identities=16% Similarity=0.306 Sum_probs=59.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc--eEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF--GIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~--el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|||+||| .|..|..+++.|.+...+ +-+.+..|+.. -+.+.+.++... ...+. .+...++|+||+|++..
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~-----~~~~~-~~~~~~aDiVilav~p~ 73 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIH-----VAKTI-EEVISQSDLIFICVKPL 73 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeE-----EECCH-HHHHHhCCEEEEecCHH
Confidence 4799999 799999999998865422 22233343321 111211111111 01111 12235799999999987
Q ss_pred chHHHHHh----cCCCCeEEECCcccccCCccchhhhcC
Q 021865 141 TTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYG 175 (306)
Q Consensus 141 ~s~~~~~~----l~~g~~VIDlSadfRl~~~~~y~~wY~ 175 (306)
...++++. +..+..|||+++...+ +..++|++
T Consensus 74 ~~~~vl~~l~~~l~~~~~iis~~ag~~~---~~L~~~~~ 109 (273)
T PRK07680 74 DIYPLLQKLAPHLTDEHCLVSITSPISV---EQLETLVP 109 (273)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCCH---HHHHHHcC
Confidence 76666544 3457789999986643 34566655
No 116
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.98 E-value=0.019 Score=57.42 Aligned_cols=90 Identities=24% Similarity=0.405 Sum_probs=54.3
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCC---------CceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCE
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHP---------YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDA 132 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP---------~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~Dv 132 (306)
+++||+|+| .|.+|+.++++|.+|+ +++++.+..++.. +.-....+...-. .+++++ ..+ .++|+
T Consensus 2 ~~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~~~~~~~~~~~~~--~d~~~l-l~d-~~iDv 75 (426)
T PRK06349 2 KPLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-KDRGVDLPGILLT--TDPEEL-VND-PDIDI 75 (426)
T ss_pred CeEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-hccCCCCccccee--CCHHHH-hhC-CCCCE
Confidence 358999999 8999999999998764 5778777654321 1100000100000 011111 001 36899
Q ss_pred EEecCCc-cchHHHH-HhcCCCCeEEE
Q 021865 133 VFCCLPH-GTTQEII-KGLPKSLKIVD 157 (306)
Q Consensus 133 VF~alp~-~~s~~~~-~~l~~g~~VID 157 (306)
|+-|++. ..+.+++ .++++|+.||-
T Consensus 76 Vve~tg~~~~~~~~~~~aL~~GkhVVt 102 (426)
T PRK06349 76 VVELMGGIEPARELILKALEAGKHVVT 102 (426)
T ss_pred EEECCCCchHHHHHHHHHHHCCCeEEE
Confidence 9998764 4557777 55689998885
No 117
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=95.97 E-value=0.0081 Score=56.56 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=39.0
Q ss_pred EEccccHHHHHHHHHHhcCCC-ceEEEEeccccCCcccc--cccCC--cccCCCccccccCcccCCCCCEEEecC
Q 021865 68 LLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIG--SVFPH--LISQDLPTMVAVKDADFSNVDAVFCCL 137 (306)
Q Consensus 68 IiGATGyvG~ELlrlL~~HP~-~el~~l~S~~~aGk~l~--~~~p~--l~~~~~~~~~~~~~~~~~~~DvVF~al 137 (306)
|.||+||+|+.|++.|+++.+ .++..+..... .+... ..++. +...|+.+.+.+ .+.++++|+||.+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~-~~~~~~~~~~~~~~~~~~Di~d~~~l-~~a~~g~d~V~H~A 74 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPP-PKFLKDLQKSGVKEYIQGDITDPESL-EEALEGVDVVFHTA 74 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEcccccc-cccchhhhcccceeEEEeccccHHHH-HHHhcCCceEEEeC
Confidence 899999999999999997664 56665542221 11111 01110 111233322223 24468999999984
No 118
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=95.95 E-value=0.011 Score=56.39 Aligned_cols=110 Identities=22% Similarity=0.328 Sum_probs=63.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccC--CCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~--~~~DvVF~alp~~~ 141 (306)
|||.|+|++|+.|.+|.+.|. +..++..++..+ . |+.+.+.+ .+.+ .+-|+|+.|..-..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~-~--------------Ditd~~~v-~~~i~~~~PDvVIn~AAyt~ 62 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE-L--------------DITDPDAV-LEVIRETRPDVVINAAAYTA 62 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc-c--------------cccChHHH-HHHHHhhCCCEEEECccccc
Confidence 459999999999999999998 788888876432 1 11111000 0111 13466665543110
Q ss_pred ------------------hHHHHHhc-CCCCeEEECCcccccCCcc--chhhhcCCCCCCcchhhhhhhcccccchhc
Q 021865 142 ------------------TQEIIKGL-PKSLKIVDLSADFRLRDVS--EYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (306)
Q Consensus 142 ------------------s~~~~~~l-~~g~~VIDlSadfRl~~~~--~y~~wY~~~h~~Pel~~~avYGLpEl~r~~ 198 (306)
+..++.+. ..|.++|=.|.||=|+-.. .|++- ..+.| --+||..-+-.|+
T Consensus 63 vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~---D~~~P----~nvYG~sKl~GE~ 133 (281)
T COG1091 63 VDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET---DTPNP----LNVYGRSKLAGEE 133 (281)
T ss_pred cccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC---CCCCC----hhhhhHHHHHHHH
Confidence 11122223 3489999999999998532 24432 22333 3388887665554
No 119
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.94 E-value=0.0061 Score=51.28 Aligned_cols=95 Identities=19% Similarity=0.302 Sum_probs=51.1
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+..++.|+|| |-+|+.++..|...---++..+.......+.+.+.++... .....++++ ...+.++|+||.|+|.+.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~-~~~~~~~~~-~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVN-IEAIPLEDL-EEALQEADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCS-EEEEEGGGH-CHHHHTESEEEE-SSTTS
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccc-cceeeHHHH-HHHHhhCCeEEEecCCCC
Confidence 3478999997 7789999999988743345555322222233333331110 001112222 122357999999999875
Q ss_pred h---HHHHHhcCCC-CeEEECC
Q 021865 142 T---QEIIKGLPKS-LKIVDLS 159 (306)
Q Consensus 142 s---~~~~~~l~~g-~~VIDlS 159 (306)
. .+.++..... ..|||++
T Consensus 88 ~~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 88 PIITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp TSSTHHHHTTTCHHCSEEEES-
T ss_pred cccCHHHHHHHHhhhhceeccc
Confidence 5 2333332222 3899996
No 120
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.94 E-value=0.0096 Score=50.01 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=53.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCC-ccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDL-PTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~-~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
..+|+|+|+ |.+|..+++.|.++...++.....+....+.+.+. +..... ....+. .+.+.++|+|++|+|.+.
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAER---FGELGIAIAYLDL-EELLAEADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---Hhhcccceeecch-hhccccCCEEEeCcCCCC
Confidence 468999997 99999999999876533444443221111222111 110000 011111 122468999999999876
Q ss_pred h----HHHH-HhcCCCCeEEECCcc
Q 021865 142 T----QEII-KGLPKSLKIVDLSAD 161 (306)
Q Consensus 142 s----~~~~-~~l~~g~~VIDlSad 161 (306)
. ..+. ..+..+..|+|++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 94 KPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 3 1121 234678999999764
No 121
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.90 E-value=0.016 Score=53.15 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=24.6
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
||.|+||||++|+.|++.|.+. ..++..+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeC
Confidence 5899999999999999999875 45665553
No 122
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.89 E-value=0.017 Score=56.05 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=54.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCC---------CceEEEEeccc-----cCCccccc------ccCCcccCCCccc-c
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHP---------YFGIKLMTADR-----KAGQSIGS------VFPHLISQDLPTM-V 120 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP---------~~el~~l~S~~-----~aGk~l~~------~~p~l~~~~~~~~-~ 120 (306)
|++||+|+| .|.+|+.++++|.+++ +++++.+..++ ..|..+.+ .+..+. .+... .
T Consensus 1 m~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~--~~~~~~~ 77 (341)
T PRK06270 1 MEMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLA--DYPEGGG 77 (341)
T ss_pred CeEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcc--cCccccc
Confidence 358999999 5999999999998764 67888876532 12222111 000000 00000 0
Q ss_pred ccCccc-C--CCCCEEEecCCcc-----chHHHH-HhcCCCCeEEE
Q 021865 121 AVKDAD-F--SNVDAVFCCLPHG-----TTQEII-KGLPKSLKIVD 157 (306)
Q Consensus 121 ~~~~~~-~--~~~DvVF~alp~~-----~s~~~~-~~l~~g~~VID 157 (306)
..+.++ + .++|+|+-|+|+. .+.+++ .++++|+.||-
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 001111 1 3689999999863 346665 45688999885
No 123
>PLN02775 Probable dihydrodipicolinate reductase
Probab=95.85 E-value=0.033 Score=53.20 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=60.9
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccc-cccC-CcccCCCccccc-cCcccCCCCC-EEEec
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIG-SVFP-HLISQDLPTMVA-VKDADFSNVD-AVFCC 136 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~-~~~p-~l~~~~~~~~~~-~~~~~~~~~D-vVF~a 136 (306)
.+.+||.|.||+|-.|+++++.+.+ ++++|+........|..+. ++.. .+......+++. ++...-+..| |++-.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDF 87 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDY 87 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEEC
Confidence 4458999999999999999999999 9999998777666766544 3211 111000001111 1000002478 77777
Q ss_pred CCccchHHHHHhc-CCCCeEE-ECCc
Q 021865 137 LPHGTTQEIIKGL-PKSLKIV-DLSA 160 (306)
Q Consensus 137 lp~~~s~~~~~~l-~~g~~VI-DlSa 160 (306)
+-.....+.++.. +.|+.+| --++
T Consensus 88 T~P~a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 88 TLPDAVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred CChHHHHHHHHHHHHCCCCEEEECCC
Confidence 7666777777654 6676544 4444
No 124
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=95.84 E-value=0.014 Score=54.44 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=24.3
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEecc
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S~ 97 (306)
|.|.|||||+|..|++.|.++. .+++.+..+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 6899999999999999999874 344444433
No 125
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.80 E-value=0.0088 Score=56.91 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCC-CceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~ 95 (306)
.++|.|.||||++|+.|++.|+++. ..++..+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3689999999999999999998763 45666554
No 126
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.80 E-value=0.032 Score=53.26 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=55.5
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcc---cCCC----cccc-ccCcccCCCCCEE
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI---SQDL----PTMV-AVKDADFSNVDAV 133 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~---~~~~----~~~~-~~~~~~~~~~DvV 133 (306)
+|+||+||| +|.+|..+...|.++ ..++..+..+... +.+.+..-.+. +... ..+. ..+.+...++|+|
T Consensus 1 ~~mkI~IiG-~G~mG~~~A~~L~~~-G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 1 MMARICVLG-AGSIGCYLGGRLAAA-GADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhc-CCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccChhhccCCCEE
Confidence 468999999 899999999999865 2456655432211 11111000000 0000 0000 1112334679999
Q ss_pred EecCCccchHHHHHhc----CCCCeEEECCccc
Q 021865 134 FCCLPHGTTQEIIKGL----PKSLKIVDLSADF 162 (306)
Q Consensus 134 F~alp~~~s~~~~~~l----~~g~~VIDlSadf 162 (306)
|+|++.....++.+.+ ..+..||++..-+
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 9999987666655443 4578899986543
No 127
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.79 E-value=0.014 Score=55.94 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=53.2
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
...+|+|+|+ |-+|..+++.|..+...++. +++++.. .+.+.+.++. ......++ .+.+.++|+||.|++..
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~-v~~r~~~ra~~la~~~g~----~~~~~~~~-~~~l~~aDvVi~at~~~ 249 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEIT-IANRTYERAEELAKELGG----NAVPLDEL-LELLNEADVVISATGAP 249 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEE-EEeCCHHHHHHHHHHcCC----eEEeHHHH-HHHHhcCCEEEECCCCC
Confidence 3478999997 99999999999874333444 3343321 1223222211 11011111 12246799999999977
Q ss_pred chHHHHHh----c-CCCCeEEECCc
Q 021865 141 TTQEIIKG----L-PKSLKIVDLSA 160 (306)
Q Consensus 141 ~s~~~~~~----l-~~g~~VIDlSa 160 (306)
...+..+. . .++..|||++-
T Consensus 250 ~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 250 HYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred chHHHHHHHHhhCCCCCeEEEEeCC
Confidence 66333332 2 24678999984
No 128
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.73 E-value=0.013 Score=55.43 Aligned_cols=34 Identities=12% Similarity=0.400 Sum_probs=27.1
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++++|.|.|||||+|..|++.|++.. .++..+.
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 345789999999999999999998753 3665554
No 129
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.72 E-value=0.026 Score=52.66 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=51.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCC-ceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~-~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
|||+||| .|..|+.+.+.|.+... .++... .++... ..... .....+. .. +..++.++|+||+|+|....
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~~~v~~~-d~~~~~--~~~~~-~~g~~~~--~~--~~~~~~~aD~Vilavp~~~~ 71 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLISKVYGY-DHNELH--LKKAL-ELGLVDE--IV--SFEELKKCDVIFLAIPVDAI 71 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCCCEEEEE-cCCHHH--HHHHH-HCCCCcc--cC--CHHHHhcCCEEEEeCcHHHH
Confidence 4899999 79999999999885432 344433 222110 11000 0000000 11 11223359999999998887
Q ss_pred HHHHHhc---CCCCeEEECCc
Q 021865 143 QEIIKGL---PKSLKIVDLSA 160 (306)
Q Consensus 143 ~~~~~~l---~~g~~VIDlSa 160 (306)
.+++..+ ..+..|+|.++
T Consensus 72 ~~~~~~l~~l~~~~iv~d~gs 92 (275)
T PRK08507 72 IEILPKLLDIKENTTIIDLGS 92 (275)
T ss_pred HHHHHHHhccCCCCEEEECcc
Confidence 7766543 45889999877
No 130
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.72 E-value=0.02 Score=52.69 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.0
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
+|.|.|+|||+|..|++.|.+. ..++..+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 4999999999999999999976 556666653
No 131
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.0086 Score=52.61 Aligned_cols=31 Identities=32% Similarity=0.222 Sum_probs=26.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|+++.|.||||++|..+++.|+++ .++..+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEe
Confidence 568999999999999999999987 6666665
No 132
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.67 E-value=0.017 Score=54.67 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=82.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
|.||+||| .|..|..+.+.|.++. .++... .++.. -+.+.+. +.. ..... .+..+++|+||+|+|...
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G-~~V~v~-d~~~~~~~~~~~~-----g~~--~~~s~-~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQG-HQLQVF-DVNPQAVDALVDK-----GAT--PAASP-AQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCC-CeEEEE-cCCHHHHHHHHHc-----CCc--ccCCH-HHHHhcCCEEEEecCCHH
Confidence 45899999 9999999999998764 355443 32211 1111110 100 01111 123467999999999875
Q ss_pred h-HHHH-------HhcCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHH
Q 021865 142 T-QEII-------KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPT 213 (306)
Q Consensus 142 s-~~~~-------~~l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~T 213 (306)
. .++. +.+..|..|||.|.-.-... ....++.... -. .+.+-.|-|-|+-. ..+.++--.||-..
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~-~~l~~~l~~~-g~-~~ldapV~g~~~~a----~~g~l~~~~gg~~~ 142 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQT-DKLIADMQAK-GF-SMMDVPVGRTSDNA----ITGTLLLLAGGTAE 142 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHH-HHHHHHHHHc-CC-cEEEccCCCCHHHH----HhCcEEEEECCCHH
Confidence 3 3332 22356889999987644321 1111221100 00 01111123333211 23455445666544
Q ss_pred HHhhhhhHHHhccCCCCceEEEEeeeecCccCccccc
Q 021865 214 SIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKE 250 (306)
Q Consensus 214 a~~LaL~PL~~~~li~~~~iiV~a~sgvSGAGr~~~~ 250 (306)
. .-.+.|+++. ++. .++ +.|-.|+|...+.
T Consensus 143 ~-~~~~~p~l~~--~g~-~~~---~~g~~G~g~~~Kl 172 (296)
T PRK15461 143 Q-VERATPILMA--MGN-ELI---NAGGPGMGIRVKL 172 (296)
T ss_pred H-HHHHHHHHHH--HcC-CeE---eeCCCCHHHHHHH
Confidence 3 4467888875 342 332 3445577665543
No 133
>PRK12320 hypothetical protein; Provisional
Probab=95.62 E-value=0.029 Score=59.65 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=52.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcc--cCCCccccccCcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~--~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
|||.|.|||||+|+.|++.|.+.. .+++.+...... . ..+.+. ..|+.+. .+ .+.+.++|+||.+.+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~--~---~~~~ve~v~~Dl~d~-~l-~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHD--A---LDPRVDYVCASLRNP-VL-QELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhh--c---ccCCceEEEccCCCH-HH-HHHhcCCCEEEEcCccCc
Confidence 489999999999999999888643 466666532111 0 011111 1122111 11 122357899999986432
Q ss_pred ----------hHHHHHhc-CCCCeEEECCccc
Q 021865 142 ----------TQEIIKGL-PKSLKIVDLSADF 162 (306)
Q Consensus 142 ----------s~~~~~~l-~~g~~VIDlSadf 162 (306)
+..++.++ +.|+++|=+|+++
T Consensus 73 ~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~~ 104 (699)
T PRK12320 73 SAPGGVGITGLAHVANAAARAGARLLFVSQAA 104 (699)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 22344444 4578888888764
No 134
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.56 E-value=0.018 Score=56.25 Aligned_cols=85 Identities=11% Similarity=0.194 Sum_probs=52.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCC-CceEEEEecccc-CCcccccccCCcccCCCccccccCcccCCCCCEEEecC---
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL--- 137 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~S~~~-aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~al--- 137 (306)
.+||+|+|+ |+ |+..++.+.+.| .++++.+.++.. ..+.+.+.|. +. -..+++ +.+++.|+++.+.
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g-i~--~y~~~e----ell~d~Di~~V~ipt~ 73 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG-VP--LYCEVE----ELPDDIDIACVVVRSA 73 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC-CC--ccCCHH----HHhcCCCEEEEEeCCC
Confidence 489999998 77 889999999888 899999887533 2233443331 10 011121 1224455555554
Q ss_pred -CccchHHHHHh-cCCCCeEE
Q 021865 138 -PHGTTQEIIKG-LPKSLKIV 156 (306)
Q Consensus 138 -p~~~s~~~~~~-l~~g~~VI 156 (306)
|++.-.+++.+ +++|+.|+
T Consensus 74 ~P~~~H~e~a~~aL~aGkHVL 94 (343)
T TIGR01761 74 IVGGQGSALARALLARGIHVL 94 (343)
T ss_pred CCCccHHHHHHHHHhCCCeEE
Confidence 44555677754 58888777
No 135
>PLN02712 arogenate dehydrogenase
Probab=95.55 E-value=0.058 Score=57.13 Aligned_cols=90 Identities=16% Similarity=0.261 Sum_probs=54.4
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccC-CCCCEEEecCC
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLP 138 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~-~~~DvVF~alp 138 (306)
..+++||+||| .|.+|+.+.+.|.++. +++..+. ++.. ..... .+ +.. ...+. .+.. .++|+||+|+|
T Consensus 49 ~~~~~kIgIIG-~G~mG~slA~~L~~~G-~~V~~~d-r~~~-~~~A~---~~-Gv~--~~~d~-~e~~~~~aDvViLavP 117 (667)
T PLN02712 49 NTTQLKIAIIG-FGNYGQFLAKTLISQG-HTVLAHS-RSDH-SLAAR---SL-GVS--FFLDP-HDLCERHPDVILLCTS 117 (667)
T ss_pred cCCCCEEEEEc-cCHHHHHHHHHHHHCC-CEEEEEe-CCHH-HHHHH---Hc-CCE--EeCCH-HHHhhcCCCEEEEcCC
Confidence 33457899999 7999999999998763 5665543 3211 11110 01 100 01111 1112 35899999999
Q ss_pred ccchHHHHHhc-----CCCCeEEECCc
Q 021865 139 HGTTQEIIKGL-----PKSLKIVDLSA 160 (306)
Q Consensus 139 ~~~s~~~~~~l-----~~g~~VIDlSa 160 (306)
.....+++..+ ..|..|+|.++
T Consensus 118 ~~~~~~vl~~l~~~~l~~g~iVvDv~S 144 (667)
T PLN02712 118 IISTENVLKSLPLQRLKRNTLFVDVLS 144 (667)
T ss_pred HHHHHHHHHhhhhhcCCCCeEEEECCC
Confidence 87766666433 45889999864
No 136
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.53 E-value=0.036 Score=52.68 Aligned_cols=75 Identities=16% Similarity=0.326 Sum_probs=50.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
.+||+|+| +|..|..+.+.|.+.. .++... .|+.. . .+ .+..+++|+||+|+|....
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G-~~V~~~-~r~~~-------------~---~~----~~~~~~advvi~~vp~~~~ 60 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANG-HRVRVW-SRRSG-------------L---SL----AAVLADADVIVSAVSMKGV 60 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCC-CEEEEE-eCCCC-------------C---CH----HHHHhcCCEEEEECChHHH
Confidence 36899998 7999999999998543 345444 33211 0 11 1223579999999999766
Q ss_pred HHHHHhc-----CCCCeEEECCc
Q 021865 143 QEIIKGL-----PKSLKIVDLSA 160 (306)
Q Consensus 143 ~~~~~~l-----~~g~~VIDlSa 160 (306)
.++++.+ ..+..|||++.
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCC
Confidence 6665443 34788999875
No 137
>PLN02214 cinnamoyl-CoA reductase
Probab=95.53 E-value=0.025 Score=54.18 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=26.6
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++++|.|.|||||+|..|++.|+++- .+++.+.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 41 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG-YTVKGTV 41 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence 35689999999999999999998763 4566554
No 138
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.50 E-value=0.034 Score=48.99 Aligned_cols=77 Identities=12% Similarity=0.234 Sum_probs=52.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..||.|+|+.+++|..+.+.|.++-. ++... .|+. .+ + .+.+.++|+||+|++...
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~-~r~~--------------~~---l----~~~l~~aDiVIsat~~~~- 99 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNA-TVTVC-HSKT--------------KN---L----KEHTKQADIVIVAVGKPG- 99 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCC-EEEEE-ECCc--------------hh---H----HHHHhhCCEEEEcCCCCc-
Confidence 37899999988899999999988643 54333 3321 01 1 123467999999997642
Q ss_pred HHHH--HhcCCCCeEEECCcccccC
Q 021865 143 QEII--KGLPKSLKIVDLSADFRLR 165 (306)
Q Consensus 143 ~~~~--~~l~~g~~VIDlSadfRl~ 165 (306)
++ ..++.+..|||++-..-.+
T Consensus 100 --ii~~~~~~~~~viIDla~prdvd 122 (168)
T cd01080 100 --LVKGDMVKPGAVVIDVGINRVPD 122 (168)
T ss_pred --eecHHHccCCeEEEEccCCCccc
Confidence 22 2356689999999876543
No 139
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.45 E-value=0.033 Score=55.82 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=53.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccc-c----cCCccc-CCCccccc-cCcccCCCCCEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-V----FPHLIS-QDLPTMVA-VKDADFSNVDAVFC 135 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~-~----~p~l~~-~~~~~~~~-~~~~~~~~~DvVF~ 135 (306)
+|||+||| .||+|.-+...|... ++++.+-..+..=..+.. . .|.+.. ...-.+.. .+.+.+.++|++|.
T Consensus 6 ~mkI~vIG-lGyvGlpmA~~la~~--~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 6 EVKIAIIG-LGYVGLPLAVEFGKS--RQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCeEEEEC-cCcchHHHHHHHhcC--CEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 47999998 899999999998874 677666432211111110 0 011100 00000001 11223578999999
Q ss_pred cCCccch--------------HHHHHhcCCCCeEEECCccc
Q 021865 136 CLPHGTT--------------QEIIKGLPKSLKIVDLSADF 162 (306)
Q Consensus 136 alp~~~s--------------~~~~~~l~~g~~VIDlSadf 162 (306)
|+|+... ..+.+.+..|..|||-|.-.
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 9997621 11223456688999987643
No 140
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.43 E-value=0.039 Score=49.86 Aligned_cols=95 Identities=20% Similarity=0.302 Sum_probs=62.2
Q ss_pred CccEEEEEccccHHHHHHHHHHh-cCCCceEEEEeccc--cCCcccccccCCcccCCCccccccCcccC--CCCCEEEec
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADR--KAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCC 136 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~-~HP~~el~~l~S~~--~aGk~l~~~~p~l~~~~~~~~~~~~~~~~--~~~DvVF~a 136 (306)
...+|+|+| .|..|..+++.+. ..+.++++.+..+. ..|+.+.. .| . .. +.++. +.+ .++|+|++|
T Consensus 83 ~~~rV~IIG-aG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-v--~~---~~~l~-~li~~~~iD~ViIa 153 (213)
T PRK05472 83 RTWNVALVG-AGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-V--YH---IDELE-EVVKENDIEIGILT 153 (213)
T ss_pred CCcEEEEEC-CCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-E--cC---HHHHH-HHHHHCCCCEEEEe
Confidence 347899999 7889999998653 45678888877542 23322211 11 0 01 11111 111 369999999
Q ss_pred CCccchHHHHHhc-CCCCeEEECCcccccC
Q 021865 137 LPHGTTQEIIKGL-PKSLKIVDLSADFRLR 165 (306)
Q Consensus 137 lp~~~s~~~~~~l-~~g~~VIDlSadfRl~ 165 (306)
+|.....+++..+ ++|++.|.+-..+.++
T Consensus 154 ~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~ 183 (213)
T PRK05472 154 VPAEAAQEVADRLVEAGIKGILNFAPVRLS 183 (213)
T ss_pred CCchhHHHHHHHHHHcCCCEEeecCceeec
Confidence 9998888888766 7898888877777775
No 141
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.41 E-value=0.038 Score=54.67 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=51.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccc-----cCCccc-----CCCccccc-cC-cccCCCCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV-----FPHLIS-----QDLPTMVA-VK-DADFSNVD 131 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~-----~p~l~~-----~~~~~~~~-~~-~~~~~~~D 131 (306)
|||+||| .||+|..+...|.+. ..++..+-.+...-+.+..- .|.+.. .....+.. .+ .+.+.++|
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~-G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADL-GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhc-CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 4899999 799999999999853 23455543222211111110 111110 00000111 11 12346899
Q ss_pred EEEecCCccch----------H----HHHHhcCCCCeEEECCc
Q 021865 132 AVFCCLPHGTT----------Q----EIIKGLPKSLKIVDLSA 160 (306)
Q Consensus 132 vVF~alp~~~s----------~----~~~~~l~~g~~VIDlSa 160 (306)
+||+|+|+... . .+.+.+..|..|||.|.
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 99999997632 1 22234566889999884
No 142
>PRK10206 putative oxidoreductase; Provisional
Probab=95.40 E-value=0.028 Score=54.39 Aligned_cols=89 Identities=11% Similarity=0.172 Sum_probs=52.4
Q ss_pred ccEEEEEccccHHHH-HHHHHHh-cCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 63 QVRIGLLGASGYTGA-EIVRLLA-NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 63 ~~kVaIiGATGyvG~-ELlrlL~-~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|+||||||. |..++ ..++.+. ..+.++++.+.++...-....+.|+.... ..+++++ .+ -.++|+|+.|+|+.
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~--~~~~~el-l~-~~~iD~V~I~tp~~ 75 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHF--TSDLDEV-LN-DPDVKLVVVCTHAD 75 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcc--cCCHHHH-hc-CCCCCEEEEeCCch
Confidence 589999995 66554 4567564 45789999988754311122222321111 1112111 01 13689999999998
Q ss_pred chHHHHHh-cCCCCeEE
Q 021865 141 TTQEIIKG-LPKSLKIV 156 (306)
Q Consensus 141 ~s~~~~~~-l~~g~~VI 156 (306)
.-.+++.+ +++|+.|+
T Consensus 76 ~H~~~~~~al~aGkhVl 92 (344)
T PRK10206 76 SHFEYAKRALEAGKNVL 92 (344)
T ss_pred HHHHHHHHHHHcCCcEE
Confidence 88887754 57676554
No 143
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.40 E-value=0.042 Score=53.60 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=51.5
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchHH
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQE 144 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~~ 144 (306)
||+||| +|.+|+.+.+.|.+.- .++.....++.. ....... .+...+. ...++ .+...++|+||+|+|.....+
T Consensus 2 ~I~iIG-~GliG~siA~~L~~~G-~~v~i~~~~~~~-~~~~~a~-~~~~~~~-~~~~~-~~~~~~aDlVilavP~~~~~~ 75 (359)
T PRK06545 2 TVLIVG-LGLIGGSLALAIKAAG-PDVFIIGYDPSA-AQLARAL-GFGVIDE-LAADL-QRAAAEADLIVLAVPVDATAA 75 (359)
T ss_pred eEEEEE-eCHHHHHHHHHHHhcC-CCeEEEEeCCCH-HHHHHHh-cCCCCcc-cccCH-HHHhcCCCEEEEeCCHHHHHH
Confidence 699998 7999999999998542 133333222211 1111000 0100000 00111 123468999999999887766
Q ss_pred HHHhc-----CCCCeEEECCcc
Q 021865 145 IIKGL-----PKSLKIVDLSAD 161 (306)
Q Consensus 145 ~~~~l-----~~g~~VIDlSad 161 (306)
++..+ ..++.|.|.++-
T Consensus 76 vl~~l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 76 LLAELADLELKPGVIVTDVGSV 97 (359)
T ss_pred HHHHHhhcCCCCCcEEEeCccc
Confidence 66433 357889998874
No 144
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=95.40 E-value=0.022 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=22.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHP 87 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP 87 (306)
|+||.|.||||++|+.|++.|.+.-
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcC
Confidence 5689999999999999999998754
No 145
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.39 E-value=0.052 Score=52.59 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=46.1
Q ss_pred cccCccEEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccCCcccc--cccCCcccCCCccccc-cC-cccCCCCCEE
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIG--SVFPHLISQDLPTMVA-VK-DADFSNVDAV 133 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~--~~~p~l~~~~~~~~~~-~~-~~~~~~~DvV 133 (306)
+..+|.||+|+||+|.+|..+...|...... +++++--....|+.+. +..+... .....+ -+ .+++.++|+|
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~---v~~~td~~~~~~~l~gaDvV 80 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAK---VTGYADGELWEKALRGADLV 80 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCce---EEEecCCCchHHHhCCCCEE
Confidence 4567789999999999999999999866555 5666543222232211 1111100 000000 01 2456899999
Q ss_pred EecCCc
Q 021865 134 FCCLPH 139 (306)
Q Consensus 134 F~alp~ 139 (306)
+++++.
T Consensus 81 VitaG~ 86 (321)
T PTZ00325 81 LICAGV 86 (321)
T ss_pred EECCCC
Confidence 999875
No 146
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.38 E-value=0.016 Score=53.26 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=25.8
Q ss_pred EEEEEccccHHHHHHHHHHhcC-CCceEEEEe
Q 021865 65 RIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~H-P~~el~~l~ 95 (306)
||.|+||||++|..|++.|++. +..++..+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 5899999999999999998865 457777664
No 147
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.37 E-value=0.04 Score=52.22 Aligned_cols=92 Identities=17% Similarity=0.278 Sum_probs=51.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc-ch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-TT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~-~s 142 (306)
|||+||| .|..|+.+.+.|.+. ..++.....+...-+.+.+. .....+ ...++ .+...+.|+||+|+|.. ..
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~-g~~v~v~dr~~~~~~~~~~~--g~~~~~--~~~e~-~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRG-GHEVVGYDRNPEAVEALAEE--GATGAD--SLEEL-VAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHC--CCeecC--CHHHH-HhhcCCCCEEEEEecCCcHH
Confidence 4899999 999999999999865 34555443222111111110 000000 01111 01112469999999987 33
Q ss_pred HHHH----HhcCCCCeEEECCccc
Q 021865 143 QEII----KGLPKSLKIVDLSADF 162 (306)
Q Consensus 143 ~~~~----~~l~~g~~VIDlSadf 162 (306)
.++. +.+..|..|||.|.-.
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCC
Confidence 4443 3345688999997643
No 148
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=95.36 E-value=0.005 Score=54.34 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=23.2
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|.|+|||||+|..|++.|++..+. ++.++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~-v~~~~ 29 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE-VIVLS 29 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE-EEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc-ccccc
Confidence 689999999999999999976554 33444
No 149
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.31 E-value=0.019 Score=54.91 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=25.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+||.|.||||++|+.|++.|+++. .+++.+.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999999764 4565554
No 150
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.30 E-value=0.031 Score=55.00 Aligned_cols=95 Identities=11% Similarity=0.227 Sum_probs=54.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCC-----
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP----- 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp----- 138 (306)
.+|.|+|+ |-+|...++.|...- .++..+..+...-+.+...+...........+.+ .+.+.++|+||.|++
T Consensus 168 ~~VlViGa-G~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l-~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 168 GDVTIIGG-GVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEI-EDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred ceEEEEcC-CHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCceeEeccCCHHHH-HHHHccCCEEEEccccCCCC
Confidence 56999997 999999999998764 3555543221111111111110000000001111 122467999999973
Q ss_pred --ccchHHHHHhcCCCCeEEECCcc
Q 021865 139 --HGTTQEIIKGLPKSLKIVDLSAD 161 (306)
Q Consensus 139 --~~~s~~~~~~l~~g~~VIDlSad 161 (306)
.-++.+.+..+..+..|||++.|
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecC
Confidence 22456677777788999999865
No 151
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=95.28 E-value=0.065 Score=51.32 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=36.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe--ccccCCccccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT--ADRKAGQSIGS 106 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~--S~~~aGk~l~~ 106 (306)
.++|.+.| ||++|.+.+|.|.++|.++++... +....||.+.+
T Consensus 2 ~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlge 46 (350)
T COG3804 2 SLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGE 46 (350)
T ss_pred CceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHH
Confidence 47888888 999999999999999999998654 56778887775
No 152
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.22 E-value=0.029 Score=52.71 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=25.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++|.|.||+|++|+.|++.|++.. .++..+.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG-YTINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 4689999999999999999998753 3555443
No 153
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.20 E-value=0.034 Score=52.27 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=62.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCC---CceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP---~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
|+||+||| .|..|..+.+.|.+.. ..++..+..+... -+.+...++... ...+. .+...++|+||+|+|
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~-----~~~~~-~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVE-----LADNE-AEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeE-----EeCCH-HHHHhhCCEEEEecC
Confidence 57899999 8999999999888643 2455544322211 111111111110 00111 122357999999999
Q ss_pred ccchHHHHHh----cCCCCeEEECCcccccCCccchhhhcC
Q 021865 139 HGTTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYG 175 (306)
Q Consensus 139 ~~~s~~~~~~----l~~g~~VIDlSadfRl~~~~~y~~wY~ 175 (306)
.....+++.. +..+..||.+.+-..+++ .++|.+
T Consensus 74 p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~---l~~~~~ 111 (277)
T PRK06928 74 PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDD---LLEITP 111 (277)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH---HHHHcC
Confidence 8877776653 345788999988877654 455653
No 154
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.15 E-value=0.031 Score=52.44 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=50.1
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchHH
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQE 144 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~~ 144 (306)
||+||| .|..|..+.+.|.++- +++... .++. . .... +........... .+.++++|+||+|+|.....+
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G-~~V~~~-dr~~-~-~~~~----~~~~g~~~~~~~-~~~~~~aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAG-YQLHVT-TIGP-E-VADE----LLAAGAVTAETA-RQVTEQADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCC-CeEEEE-cCCH-H-HHHH----HHHCCCcccCCH-HHHHhcCCEEEEecCCHHHHH
Confidence 589999 7999999999998653 455544 3221 1 1111 110000001111 233468999999999764432
Q ss_pred -HH-------HhcCCCCeEEECCcc
Q 021865 145 -II-------KGLPKSLKIVDLSAD 161 (306)
Q Consensus 145 -~~-------~~l~~g~~VIDlSad 161 (306)
++ +.+..|..|||.|.-
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSI 95 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCC
Confidence 32 223568889998763
No 155
>PRK05086 malate dehydrogenase; Provisional
Probab=95.11 E-value=0.06 Score=51.77 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=40.7
Q ss_pred cEEEEEccccHHHHHHHHHHhc-CCCc-eEEEEecccc-CCccccccc-CCcccCCCcccc---ccC-cccCCCCCEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLAN-HPYF-GIKLMTADRK-AGQSIGSVF-PHLISQDLPTMV---AVK-DADFSNVDAVFC 135 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~-HP~~-el~~l~S~~~-aGk~l~~~~-p~l~~~~~~~~~---~~~-~~~~~~~DvVF~ 135 (306)
|||+|+||||.+|..++..|.. .+.. +++++..... .|..+.-.+ +... .+. .-+ .+++.++|+||+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~-----~i~~~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAV-----KIKGFSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCc-----eEEEeCCCCHHHHcCCCCEEEE
Confidence 6899999999999999998854 4554 4555542211 111111111 1000 111 011 245678999999
Q ss_pred cCCc
Q 021865 136 CLPH 139 (306)
Q Consensus 136 alp~ 139 (306)
|++.
T Consensus 76 taG~ 79 (312)
T PRK05086 76 SAGV 79 (312)
T ss_pred cCCC
Confidence 9874
No 156
>PLN02686 cinnamoyl-CoA reductase
Probab=95.11 E-value=0.017 Score=56.08 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=29.5
Q ss_pred cccccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 57 TQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 57 ~~~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.....++++|.|.||||++|+.|++.|+++ ..+++.+.
T Consensus 47 ~~~~~~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~ 84 (367)
T PLN02686 47 AGADAEARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAV 84 (367)
T ss_pred cccCCCCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEe
Confidence 344555679999999999999999999865 45665554
No 157
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.05 E-value=0.034 Score=52.63 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=42.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc--CCcccccccCCcccCCCccccc-cCcccCCCCCEEEecCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~--aGk~l~~~~p~l~~~~~~~~~~-~~~~~~~~~DvVF~alp 138 (306)
|+||+|+|| |++|..+...|+.+...+++++-.... .|+.+.-.+..........+.. .+.+++.++|+||++.+
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCC
Confidence 689999998 999999999998765337766643221 1221110011000000011211 12245688999999864
No 158
>PLN02650 dihydroflavonol-4-reductase
Probab=95.03 E-value=0.029 Score=53.54 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=25.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++|.|.|||||+|+.|++.|++.. .+++.+.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~ 36 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG-YTVRATV 36 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEE
Confidence 3589999999999999999998753 4666554
No 159
>PRK05442 malate dehydrogenase; Provisional
Probab=94.99 E-value=0.052 Score=52.64 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=45.3
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcC------CCceEEEEecccc----CCcccc--ccc-CCcccCCCccccccCccc
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANH------PYFGIKLMTADRK----AGQSIG--SVF-PHLISQDLPTMVAVKDAD 126 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~H------P~~el~~l~S~~~----aGk~l~--~~~-p~l~~~~~~~~~~~~~~~ 126 (306)
|.++.||+|+||+|.+|..++-.|... ...+++++-.... .|+.+. +.- |.+. +. .+..-+.++
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~--~~-~i~~~~y~~ 77 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA--GV-VITDDPNVA 77 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC--Cc-EEecChHHH
Confidence 356789999999999999998877643 2336777754222 333222 111 2111 11 111112356
Q ss_pred CCCCCEEEecCCc
Q 021865 127 FSNVDAVFCCLPH 139 (306)
Q Consensus 127 ~~~~DvVF~alp~ 139 (306)
+.++|+|+.+.+.
T Consensus 78 ~~daDiVVitaG~ 90 (326)
T PRK05442 78 FKDADVALLVGAR 90 (326)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999888763
No 160
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=94.98 E-value=0.065 Score=50.99 Aligned_cols=91 Identities=9% Similarity=0.096 Sum_probs=57.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE-eccccCCcccccccCCcccCCCcc------ccccCcccCCC-CC-EEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLPT------MVAVKDADFSN-VD-AVF 134 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l-~S~~~aGk~l~~~~p~l~~~~~~~------~~~~~~~~~~~-~D-vVF 134 (306)
+||.|.||+|-.|+++++.+.+ ++++|+.. ...+..|+.+.++... +.+. ..++ .+.++. +| |++
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l-~~~~~~~~d~VvI 74 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARI-GEVFAKYPELICI 74 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccH-HHHHhhcCCEEEE
Confidence 5899999999999999999988 99999986 4445555554433210 1111 1111 111223 78 888
Q ss_pred ecCCccchHHHHHhc-CCCCeEE-ECCc
Q 021865 135 CCLPHGTTQEIIKGL-PKSLKIV-DLSA 160 (306)
Q Consensus 135 ~alp~~~s~~~~~~l-~~g~~VI-DlSa 160 (306)
-.+-.....+.+... ..|+.+| -.++
T Consensus 75 DFT~P~~~~~n~~~~~~~gv~~ViGTTG 102 (275)
T TIGR02130 75 DYTHPSAVNDNAAFYGKHGIPFVMGTTG 102 (275)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEcCCC
Confidence 777667777777655 6666554 4444
No 161
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.96 E-value=0.029 Score=49.23 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=55.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc---
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH--- 139 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~--- 139 (306)
..+|+|+| .|-+|+++.++|...- .++..............+ . .. ....+ ++.+..+|+|++++|-
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~----~-~~---~~~~l-~ell~~aDiv~~~~plt~~ 104 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADE----F-GV---EYVSL-DELLAQADIVSLHLPLTPE 104 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHH----T-TE---EESSH-HHHHHH-SEEEE-SSSSTT
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCC-ceeEEecccCChhhhccc----c-cc---eeeeh-hhhcchhhhhhhhhccccc
Confidence 36899999 7999999999999664 366666432221110000 0 00 01112 2234679999999992
Q ss_pred ---cchHHHHHhcCCCCeEEECCcccccCCc
Q 021865 140 ---GTTQEIIKGLPKSLKIVDLSADFRLRDV 167 (306)
Q Consensus 140 ---~~s~~~~~~l~~g~~VIDlSadfRl~~~ 167 (306)
-...+...++.+|..+|..+-.--.++.
T Consensus 105 T~~li~~~~l~~mk~ga~lvN~aRG~~vde~ 135 (178)
T PF02826_consen 105 TRGLINAEFLAKMKPGAVLVNVARGELVDED 135 (178)
T ss_dssp TTTSBSHHHHHTSTTTEEEEESSSGGGB-HH
T ss_pred cceeeeeeeeeccccceEEEeccchhhhhhh
Confidence 3336667778889999987765555443
No 162
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.91 E-value=0.051 Score=47.17 Aligned_cols=125 Identities=19% Similarity=0.333 Sum_probs=71.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcc------cccccCCccc-------------CCCccccccCc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS------IGSVFPHLIS-------------QDLPTMVAVKD 124 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~------l~~~~p~l~~-------------~~~~~~~~~~~ 124 (306)
+||+|-| -|=+|+.++|.+...|+++++.+-.....-+. ...+|-.+.. .....+..-++
T Consensus 1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEEC-CCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 5899988 89999999999999999999998543311111 1122222210 00001111122
Q ss_pred ccC----CCCCEEEecCCccchHHHHHh-cCCCC-eEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhc
Q 021865 125 ADF----SNVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (306)
Q Consensus 125 ~~~----~~~DvVF~alp~~~s~~~~~~-l~~g~-~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~ 198 (306)
+++ .++|+|+-|+|...+.+-+.. +++|. +|| +|+-.--. ..| -.||| .|.++
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVi-isap~~~~-------------~~~----t~V~G---vN~~~ 138 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVI-ISAPSKDD-------------ADP----TFVMG---VNHDD 138 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEE-ESSS-SSS-------------SSE----EE-TT---TSGGG
T ss_pred cccccccccccEEEeccccceeccccccccccccccee-eccccccc-------------cCC----eEEee---ccHHH
Confidence 222 378999999999888776654 45564 454 56533321 011 12555 34455
Q ss_pred ccCC-cEEecCCC
Q 021865 199 IKNA-RLVANPGC 210 (306)
Q Consensus 199 i~~a-~lVAnPGC 210 (306)
+... ++|+|..|
T Consensus 139 ~~~~~~iIS~aSC 151 (151)
T PF00044_consen 139 YDPEHHIISNASC 151 (151)
T ss_dssp GTTTTSEEEE--H
T ss_pred hCCCCCEEEccCC
Confidence 5555 89999887
No 163
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.90 E-value=0.059 Score=53.95 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=34.1
Q ss_pred CccccccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc
Q 021865 55 GKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK 99 (306)
Q Consensus 55 ~~~~~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~ 99 (306)
..+..+.++..|.|+||||.+|+.+++.|.+.- +.+..+..+.+
T Consensus 71 ~~~~~~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~ 114 (411)
T KOG1203|consen 71 PPNNNSKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQ 114 (411)
T ss_pred cCCCCCCCCCeEEEecCCCchhHHHHHHHHHCC-CeeeeeccChh
Confidence 445566677899999999999999999999765 66666664433
No 164
>PRK07201 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.043 Score=56.68 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=27.0
Q ss_pred cEEEEEccccHHHHHHHHHHhc-CCCceEEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTA 96 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~-HP~~el~~l~S 96 (306)
|||.|.|||||+|+.|++.|.+ ....++..+..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4899999999999999999985 34567776653
No 165
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.88 E-value=0.042 Score=52.37 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=76.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE-eccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l-~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
-.|+|+||||-+|..+.|+|..|-....-.+ .+.+.--+.+...-..+. .+ .+..++.+.....++||.|. ...-
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~-~~--~i~s~d~~~~~e~i~v~vAs-~~~g 243 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELG-RG--KIMSLDYALPQEDILVWVAS-MPKG 243 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccC-CC--eeeeccccccccceEEEEee-cCCC
Confidence 4699999999999999999997766543333 111111111111000111 11 11122222233445556554 2233
Q ss_pred HHHHHh-cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhhhhhH
Q 021865 143 QEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVP 221 (306)
Q Consensus 143 ~~~~~~-l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~LaL~P 221 (306)
-++.+. +..||.|||-. +-+|.+.|.+.-+--++.|.-+-++--.+ -|--+.+-+...=.-++|.+-.++|.+--
T Consensus 244 ~~I~pq~lkpg~~ivD~g---~P~dvd~~vk~~~~V~Ii~GGlV~~s~~i-t~gi~~~~~~p~~~l~aClAEtlil~~eg 319 (351)
T COG5322 244 VEIFPQHLKPGCLIVDGG---YPKDVDTSVKNVGGVRIIPGGLVEHSLDI-TWGIMKIVGMPVRQLFACLAETLILEFEG 319 (351)
T ss_pred ceechhhccCCeEEEcCC---cCcccccccccCCCeEEecCccccCcccc-chhHHHHcccchhhHHHHHHHHHHHHhcc
Confidence 466665 58899999932 44555556555443344443111110000 00011111111123578998888888776
Q ss_pred HHhc
Q 021865 222 LIQA 225 (306)
Q Consensus 222 L~~~ 225 (306)
.+.+
T Consensus 320 ~~~~ 323 (351)
T COG5322 320 EHTN 323 (351)
T ss_pred hhhh
Confidence 6655
No 166
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.87 E-value=0.075 Score=51.24 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=43.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccCCcccccccCCcccCCCccccc--cC---cccCCCCCEEEecC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVA--VK---DADFSNVDAVFCCL 137 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~--~~---~~~~~~~DvVF~al 137 (306)
|||+|+||||.+|..+.-.|...+.. |++++--+...|+.+.-.+-. ....+.. -+ .+++.++|+|+++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~----~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHIN----TPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCC----CcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 59999999999999999999866654 576664333333332211100 0001111 11 25678999999887
Q ss_pred Cc
Q 021865 138 PH 139 (306)
Q Consensus 138 p~ 139 (306)
+.
T Consensus 77 G~ 78 (310)
T cd01337 77 GV 78 (310)
T ss_pred CC
Confidence 64
No 167
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=94.86 E-value=0.046 Score=46.39 Aligned_cols=36 Identities=25% Similarity=0.583 Sum_probs=31.3
Q ss_pred EEEEccccHHHHHHHHHHhcCC-CceEEEEeccccCC
Q 021865 66 IGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAG 101 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP-~~el~~l~S~~~aG 101 (306)
|+|+|+||=+|.+-++.+.+|| .++++.++..++..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~ 37 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIE 37 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHH
Confidence 6899999999999999999998 67999998755543
No 168
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.86 E-value=0.049 Score=51.22 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=55.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCc----ccccccCCcc-cCCC----------cccc-ccC-cc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ----SIGSVFPHLI-SQDL----------PTMV-AVK-DA 125 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk----~l~~~~p~l~-~~~~----------~~~~-~~~-~~ 125 (306)
+.||+||| +|+.|..+...|+++ ..++..+..+...-+ .+....+.+. ...+ ..+. ..+ .+
T Consensus 3 ~~kIaViG-aG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 3 IKNVTVAG-AGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 46899999 599999999999865 345555532211101 1100001000 0000 0010 011 12
Q ss_pred cCCCCCEEEecCCccch--HHHHHh----cCCCCeEEECCcccccCC
Q 021865 126 DFSNVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 126 ~~~~~DvVF~alp~~~s--~~~~~~----l~~g~~VIDlSadfRl~~ 166 (306)
.++++|+||.|.|.... .++... +..++.|.++++.+....
T Consensus 81 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~ 127 (287)
T PRK08293 81 AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ 127 (287)
T ss_pred HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence 35789999999997643 333333 345677778888876643
No 169
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.85 E-value=0.037 Score=43.84 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=51.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEec--cccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA--DRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S--~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
+..|++|+|+++...+.+ ..+.....+++..+.. .+..|+.+.. +... ..++++ .+.. +.|+.++|.|.
T Consensus 2 k~~~v~ivGag~~G~a~~-~~~~~~~g~~i~~~~dv~~~~~G~~i~g----ipV~--~~~~~l-~~~~-~i~iaii~VP~ 72 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALL-YNGFSMRGFGIVAVFDVDPEKIGKEIGG----IPVY--GSMDEL-EEFI-EIDIAIITVPA 72 (96)
T ss_dssp TTEEEEEETTTSHHHHHH-HHHHHHHCECEEEEEEECTTTTTSEETT----EEEE--SSHHHH-HHHC-TTSEEEEES-H
T ss_pred CCCeEEEECCCCcHHHHH-HhHHHHcCCCCEEEEEcCCCccCcEECC----EEee--ccHHHh-hhhh-CCCEEEEEcCH
Confidence 457899999988766666 4444445677666543 4445655441 1111 012222 1222 49999999999
Q ss_pred cchHHHHHhc-CCCCeEE
Q 021865 140 GTTQEIIKGL-PKSLKIV 156 (306)
Q Consensus 140 ~~s~~~~~~l-~~g~~VI 156 (306)
..+++.+..+ ++|++-|
T Consensus 73 ~~a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 73 EAAQEVADELVEAGIKGI 90 (96)
T ss_dssp HHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 9999888665 7777654
No 170
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=94.84 E-value=0.067 Score=48.79 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=38.2
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
|.|.||||++|..|++.|.+. ..+++.+..+...-.... . ....+... ... .+.+.++|+||.|.+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~---~-~~~~~~~~-~~~-~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD-GHEVTILTRSPPAGANTK---W-EGYKPWAP-LAE-SEALEGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc-CCEEEEEeCCCCCCCccc---c-eeeecccc-cch-hhhcCCCCEEEECCC
Confidence 579999999999999999864 367777763222111110 0 00011110 111 233467999998885
No 171
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.83 E-value=0.07 Score=50.56 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=51.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc-ch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-TT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~-~s 142 (306)
|||+||| .|..|..+.+.|.++. .++.....+...-+.+.+ .........++. ....+++|+||+|+|.. ..
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g-~~v~v~dr~~~~~~~~~~----~g~~~~~s~~~~-~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDG-HEVVGYDVNQEAVDVAGK----LGITARHSLEEL-VSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHH----CCCeecCCHHHH-HHhCCCCCEEEEEecCchHH
Confidence 3799999 9999999999998753 455544221111111111 000000011110 01112379999999987 44
Q ss_pred HHHHH----hcCCCCeEEECCcccc
Q 021865 143 QEIIK----GLPKSLKIVDLSADFR 163 (306)
Q Consensus 143 ~~~~~----~l~~g~~VIDlSadfR 163 (306)
.++.. .+..|..|||+|...-
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCc
Confidence 44433 3456889999976433
No 172
>PLN02712 arogenate dehydrogenase
Probab=94.83 E-value=0.071 Score=56.49 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=54.1
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccC-CCCCEEEecCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHG 140 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~-~~~DvVF~alp~~ 140 (306)
+++||+||| .|.+|+.+.+.|.+.. .++... +++...+... .+ +.. ...+. ++.+ ..+|+||+|+|..
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G-~~V~~~-dr~~~~~~a~----~~-Gv~--~~~~~-~el~~~~aDvVILavP~~ 436 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQG-HTVLAY-SRSDYSDEAQ----KL-GVS--YFSDA-DDLCEEHPEVILLCTSIL 436 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCc-CEEEEE-ECChHHHHHH----Hc-CCe--EeCCH-HHHHhcCCCEEEECCChH
Confidence 457999999 8999999999998643 456544 3332101100 01 100 01111 1112 2489999999987
Q ss_pred chHHHHHh-----cCCCCeEEECCcc
Q 021865 141 TTQEIIKG-----LPKSLKIVDLSAD 161 (306)
Q Consensus 141 ~s~~~~~~-----l~~g~~VIDlSad 161 (306)
...+++.. +..|..|+|.++-
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCc
Confidence 77666643 2458899999765
No 173
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=94.82 E-value=0.033 Score=51.57 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=23.7
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
|.|.||||++|..|++.|.+....++..+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~ 29 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVV 29 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEE
Confidence 57999999999999999997764455544
No 174
>PLN00203 glutamyl-tRNA reductase
Probab=94.78 E-value=0.042 Score=56.56 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=54.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc-
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~- 141 (306)
..+|+|||+ |-+|..+++.|..+..-++..+.......+.+.+.++.... ....+.+. .+.+.++|+||+|++...
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i-~~~~~~dl-~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI-IYKPLDEM-LACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce-EeecHhhH-HHHHhcCCEEEEccCCCCC
Confidence 368999997 99999999999876544454443221222233332321110 00011111 123468999999986554
Q ss_pred --hHHHHHhcC-------CCCeEEECCcc
Q 021865 142 --TQEIIKGLP-------KSLKIVDLSAD 161 (306)
Q Consensus 142 --s~~~~~~l~-------~g~~VIDlSad 161 (306)
..+.++.+. +...+||++=-
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 356665541 12478998864
No 175
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=94.61 E-value=0.036 Score=52.68 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=23.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIK 92 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~ 92 (306)
|||.|.||||++|..|++.|++.....+.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~ 29 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVV 29 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEE
Confidence 48999999999999999999876543333
No 176
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.61 E-value=0.081 Score=51.19 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=42.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc------eEEEEeccc----cCCcccc--ccc-CCcccCCCccccccCcccCCCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF------GIKLMTADR----KAGQSIG--SVF-PHLISQDLPTMVAVKDADFSNV 130 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~------el~~l~S~~----~aGk~l~--~~~-p~l~~~~~~~~~~~~~~~~~~~ 130 (306)
.||+|+||+|.+|..+...|...+-+ +++++--.. ..|..+. +.- |.+.. . .+..-+.++++++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~--~-~i~~~~~~~~~~a 77 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKG--V-VITTDPEEAFKDV 77 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCC--c-EEecChHHHhCCC
Confidence 48999999999999999999865544 366664322 1121111 110 11111 0 1111123556899
Q ss_pred CEEEecCCc
Q 021865 131 DAVFCCLPH 139 (306)
Q Consensus 131 DvVF~alp~ 139 (306)
|+|+.+.+.
T Consensus 78 DiVVitAG~ 86 (323)
T cd00704 78 DVAILVGAF 86 (323)
T ss_pred CEEEEeCCC
Confidence 999888754
No 177
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=94.57 E-value=0.15 Score=49.09 Aligned_cols=93 Identities=20% Similarity=0.368 Sum_probs=56.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..+|+|+| .|-+|+++.+.|..+- +++......+.....+.. +. . ...+ ++.+.++|+|++++|...+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG-~~V~~~~~~~~~~~~~~~----~~--~---~~~l-~e~l~~aDvvv~~lPlt~~ 203 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWG-FPLRCWSRSRKSWPGVQS----FA--G---REEL-SAFLSQTRVLINLLPNTPE 203 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCCCCCCCcee----ec--c---cccH-HHHHhcCCEEEECCCCCHH
Confidence 36899999 9999999999998653 456555321111000110 00 0 1112 2334789999999996655
Q ss_pred -HHH-----HHhcCCCCeEEECCcccccCCc
Q 021865 143 -QEI-----IKGLPKSLKIVDLSADFRLRDV 167 (306)
Q Consensus 143 -~~~-----~~~l~~g~~VIDlSadfRl~~~ 167 (306)
..+ ..++..|..+|+.+----.+..
T Consensus 204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~ 234 (312)
T PRK15469 204 TVGIINQQLLEQLPDGAYLLNLARGVHVVED 234 (312)
T ss_pred HHHHhHHHHHhcCCCCcEEEECCCccccCHH
Confidence 333 2345678999998865555543
No 178
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.48 E-value=0.1 Score=49.51 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=61.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhc--CCCceEEEEecccc-CCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~--HP~~el~~l~S~~~-aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
.+||+||| =|.+|+.+.+.|.+ .+.++++.+..+.. .-+.+... .+.+.++++....+.|+|+=|.++
T Consensus 2 ~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 2 THRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred ceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhcCCCEEEECCCH
Confidence 47999999 79999999999885 45688888865432 11111111 111222222112579999999999
Q ss_pred cchHHHHHhc-CCCCeEEECC-cccc
Q 021865 140 GTTQEIIKGL-PKSLKIVDLS-ADFR 163 (306)
Q Consensus 140 ~~s~~~~~~l-~~g~~VIDlS-adfR 163 (306)
..-+++.+++ ++|+-++=+| ++|-
T Consensus 73 ~av~e~~~~iL~~g~dlvv~SvGALa 98 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGALA 98 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEChhHhc
Confidence 9999999765 7787666666 5554
No 179
>PLN00106 malate dehydrogenase
Probab=94.47 E-value=0.099 Score=50.69 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=43.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccCCcccc--cccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIG--SVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~--~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
.||+|+||+|.+|..+...|...+.. +++++--....|+.+. +..+.....+.....+. .+++.++|+|+++.+.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~-~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQL-GDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCH-HHHcCCCCEEEEeCCC
Confidence 59999999999999999999866665 5666643333332221 11111100000000000 2456899999988764
No 180
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=94.46 E-value=0.084 Score=50.10 Aligned_cols=87 Identities=22% Similarity=0.320 Sum_probs=50.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s- 142 (306)
|||++|| .|..|..+.+.|.+.- +++.... +...-+.+.+ . +.. ..... .+..+++|+||+|+|+...
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G-~~v~v~~-~~~~~~~~~~----~-g~~--~~~s~-~~~~~~advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAG-HQLHVTT-IGPVADELLS----L-GAV--SVETA-RQVTEASDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCC-CeEEEEe-CCHhHHHHHH----c-CCe--ecCCH-HHHHhcCCEEEEeCCChHHH
Confidence 3799999 9999999999998654 3554332 2211111111 0 110 01111 1223679999999998754
Q ss_pred HHHH-------HhcCCCCeEEECCcc
Q 021865 143 QEII-------KGLPKSLKIVDLSAD 161 (306)
Q Consensus 143 ~~~~-------~~l~~g~~VIDlSad 161 (306)
.+.. +.+..|..|||.|..
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~ 95 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSI 95 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCC
Confidence 3332 123458899999864
No 181
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.46 E-value=0.089 Score=50.97 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=44.2
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCc------eEEEEeccc----cCCcccc--ccc-CCcccCCCccccccCcccCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYF------GIKLMTADR----KAGQSIG--SVF-PHLISQDLPTMVAVKDADFS 128 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~------el~~l~S~~----~aGk~l~--~~~-p~l~~~~~~~~~~~~~~~~~ 128 (306)
+.+||+|+||+|.+|+.+.-.|...+-+ +++++-... ..|+.+. +.- |.+. +. .+..-+.+++.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~-~i~~~~~~~~~ 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA--GV-VATTDPEEAFK 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC--Cc-EEecChHHHhC
Confidence 3589999999999999999988754433 577764322 2333221 111 1111 11 11111235668
Q ss_pred CCCEEEecCCc
Q 021865 129 NVDAVFCCLPH 139 (306)
Q Consensus 129 ~~DvVF~alp~ 139 (306)
++|+|+.+.+.
T Consensus 79 daDvVVitAG~ 89 (323)
T TIGR01759 79 DVDAALLVGAF 89 (323)
T ss_pred CCCEEEEeCCC
Confidence 99999888764
No 182
>PRK05865 hypothetical protein; Provisional
Probab=94.46 E-value=0.091 Score=57.15 Aligned_cols=94 Identities=22% Similarity=0.306 Sum_probs=52.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc--
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~-- 141 (306)
|||.|.||||++|++|++.|.++. .+++.+.. +.... ...... +...|+.+...+ ...+.++|+||.|.....
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R-~~~~~-~~~~v~-~v~gDL~D~~~l-~~al~~vD~VVHlAa~~~~~ 75 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIAR-HRPDS-WPSSAD-FIAADIRDATAV-ESAMTGADVVAHCAWVRGRN 75 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC-Cchhh-cccCce-EEEeeCCCHHHH-HHHHhCCCEEEECCCcccch
Confidence 489999999999999999998753 45666543 21111 110000 111233222222 122467999999875321
Q ss_pred -------hHHHHHhc-CCCC-eEEECCccc
Q 021865 142 -------TQEIIKGL-PKSL-KIVDLSADF 162 (306)
Q Consensus 142 -------s~~~~~~l-~~g~-~VIDlSadf 162 (306)
+..+++++ ..++ ++|-.|+..
T Consensus 76 ~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 76 DHINIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 22344444 3443 677777754
No 183
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.38 E-value=0.068 Score=45.91 Aligned_cols=97 Identities=21% Similarity=0.408 Sum_probs=55.6
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCC---cccCCCcc-cc-ccC-cccCCCCCEEEecCC
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH---LISQDLPT-MV-AVK-DADFSNVDAVFCCLP 138 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~---l~~~~~~~-~~-~~~-~~~~~~~DvVF~alp 138 (306)
||+|+| .|-.|..+...|..+. .++.+...++..-+.+.+.+.+ +.+..++. +. ..| ++.++++|++++++|
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEEC-cCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 799999 7999999999999766 5555554333221222221111 11111110 11 112 234578999999999
Q ss_pred ccchHHHHHhc----CCCCeEEECCcccc
Q 021865 139 HGTTQEIIKGL----PKSLKIVDLSADFR 163 (306)
Q Consensus 139 ~~~s~~~~~~l----~~g~~VIDlSadfR 163 (306)
+-.-.++++.+ ..+..+|-++.-|.
T Consensus 79 s~~~~~~~~~l~~~l~~~~~ii~~~KG~~ 107 (157)
T PF01210_consen 79 SQAHREVLEQLAPYLKKGQIIISATKGFE 107 (157)
T ss_dssp GGGHHHHHHHHTTTSHTT-EEEETS-SEE
T ss_pred HHHHHHHHHHHhhccCCCCEEEEecCCcc
Confidence 88877777654 35789998888883
No 184
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.37 E-value=0.1 Score=50.47 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=43.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcC------CCceEEEEecccc----CCccccccc---CCcccCCCccccccCcccCCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANH------PYFGIKLMTADRK----AGQSIGSVF---PHLISQDLPTMVAVKDADFSN 129 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~H------P~~el~~l~S~~~----aGk~l~~~~---p~l~~~~~~~~~~~~~~~~~~ 129 (306)
..||+|+||+|.+|..++-.|... ...+++++-..+. .|+.+.-.| |.+. +. .+..-+.+++.+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~-~i~~~~~~~~~d 78 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA--EI-VITDDPNVAFKD 78 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC--ce-EEecCcHHHhCC
Confidence 469999999999999999988743 3336777754222 233222111 1111 10 111112356789
Q ss_pred CCEEEecCCc
Q 021865 130 VDAVFCCLPH 139 (306)
Q Consensus 130 ~DvVF~alp~ 139 (306)
+|+|+.+.+.
T Consensus 79 aDivvitaG~ 88 (322)
T cd01338 79 ADWALLVGAK 88 (322)
T ss_pred CCEEEEeCCC
Confidence 9999998765
No 185
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=94.35 E-value=0.071 Score=50.18 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=25.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|||.|+||||++|..|++.|.+. ..+++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-CCeEEEEe
Confidence 58999999999999999998865 34566553
No 186
>PRK06046 alanine dehydrogenase; Validated
Probab=94.33 E-value=0.052 Score=52.35 Aligned_cols=95 Identities=12% Similarity=0.199 Sum_probs=55.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCC-cccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aG-k~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
...+++|+| +|..|...++.|...+.++.+.+.++.... +.+.+.+....+.......+. ++.++ +|+|++|+|+.
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~-aDiVv~aTps~ 204 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDI-EEACD-CDILVTTTPSR 204 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCH-HHHhh-CCEEEEecCCC
Confidence 346899998 788888888988888889888887655322 122221110001001001111 12234 99999999975
Q ss_pred chHHHH--HhcCCCCeEEECCcc
Q 021865 141 TTQEII--KGLPKSLKIVDLSAD 161 (306)
Q Consensus 141 ~s~~~~--~~l~~g~~VIDlSad 161 (306)
. .+. ..+..|..|.-.+++
T Consensus 205 ~--P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 K--PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred C--cEecHHHcCCCCEEEecCCC
Confidence 4 322 234678887666553
No 187
>PLN02778 3,5-epimerase/4-reductase
Probab=94.30 E-value=0.052 Score=51.25 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=25.9
Q ss_pred cccCccEEEEEccccHHHHHHHHHHhcCCCceEE
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIK 92 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~ 92 (306)
+..+.|||.|.|||||+|+.|++.|.++.+ +++
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~ 37 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQGI-DFH 37 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCCC-EEE
Confidence 344457999999999999999999986532 443
No 188
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.30 E-value=0.091 Score=50.85 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=55.7
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccccc---CCcc-cCCCc-cccc-cC-cccCCCCCE
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF---PHLI-SQDLP-TMVA-VK-DADFSNVDA 132 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~---p~l~-~~~~~-~~~~-~~-~~~~~~~Dv 132 (306)
...|+||+|+| +|..|..+...|.+.-. ++.+..+...-+.+.+.+ +.+. +..++ .+.. .+ .+.+.++|+
T Consensus 4 ~~~~mkI~IiG-aGa~G~alA~~La~~g~--v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDl 80 (341)
T PRK12439 4 AKREPKVVVLG-GGSWGTTVASICARRGP--TLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADV 80 (341)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCE
Confidence 45568999999 69999999999986542 333432222111121111 0111 11111 0111 11 123468999
Q ss_pred EEecCCccchHHHHHh----cCCCCeEEECCcccc
Q 021865 133 VFCCLPHGTTQEIIKG----LPKSLKIVDLSADFR 163 (306)
Q Consensus 133 VF~alp~~~s~~~~~~----l~~g~~VIDlSadfR 163 (306)
||+|.|+....++++. +..+..||-++.-+-
T Consensus 81 Vilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 81 VVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 9999998776665544 344566777666443
No 189
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.28 E-value=0.11 Score=47.95 Aligned_cols=163 Identities=18% Similarity=0.310 Sum_probs=82.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCC---ceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPY---FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~---~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|||++|| .|..|..+.+-|.+... .++.....+ ...+ ... ...+ +.. ...+. .+...++|+||+|++..
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-~~~~-~~~-~~~~-g~~--~~~~~-~e~~~~aDvVil~v~~~ 72 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPPSRISTADDS-NPAR-RDV-FQSL-GVK--TAASN-TEVVKSSDVIILAVKPQ 72 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCC-CHHH-HHH-HHHc-CCE--EeCCh-HHHHhcCCEEEEEECcH
Confidence 5899999 99999999998885432 244433122 2211 111 0001 110 01111 12235799999999876
Q ss_pred chHHHHHh----cCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHh
Q 021865 141 TTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQ 216 (306)
Q Consensus 141 ~s~~~~~~----l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~ 216 (306)
...++... +..+..||+..+.... +..++|.+..+.+- . .-..|-..+. ...-++.++++.... .
T Consensus 73 ~~~~vl~~l~~~~~~~~~iIs~~~g~~~---~~l~~~~~~~~vvr-~----mP~~~~~~~~--~~~~l~~~~~~~~~~-~ 141 (266)
T PLN02688 73 VVKDVLTELRPLLSKDKLLVSVAAGITL---ADLQEWAGGRRVVR-V----MPNTPCLVGE--AASVMSLGPAATADD-R 141 (266)
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCCCcH---HHHHHHcCCCCEEE-E----CCCcHHHHhC--ceEEEEeCCCCCHHH-H
Confidence 66666543 3457778887665443 34556654321100 0 0011110100 112345566654333 3
Q ss_pred hhhhHHHhccCCCCceEE-----EEeeeecCccCccc
Q 021865 217 LPLVPLIQANLIQYRNII-----IDAKSGVSGAGRGA 248 (306)
Q Consensus 217 LaL~PL~~~~li~~~~ii-----V~a~sgvSGAGr~~ 248 (306)
-.+.+|++. ++. -+. .|...|.+|.|-.-
T Consensus 142 ~~v~~l~~~--~G~-~~~~~e~~~d~~~~~~g~g~a~ 175 (266)
T PLN02688 142 DLVATLFGA--VGK-IWVVDEKLLDAVTGLSGSGPAY 175 (266)
T ss_pred HHHHHHHHh--CCC-EEEeCHHHcchhHhhhcCHHHH
Confidence 466788765 332 111 24556778777664
No 190
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.27 E-value=0.068 Score=49.96 Aligned_cols=102 Identities=14% Similarity=0.268 Sum_probs=55.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc-CCc---ccccccCCcc--c-CCC-------cccc-ccCcccC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQ---SIGSVFPHLI--S-QDL-------PTMV-AVKDADF 127 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~-aGk---~l~~~~p~l~--~-~~~-------~~~~-~~~~~~~ 127 (306)
+.||+|||+ |++|..+...|+.+. .+++.+-.+.. ..+ .+.+....+. + .+. ..+. ..+.+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 80 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL 80 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 568999995 999999999998763 35655532111 100 0000000000 0 000 0010 0112335
Q ss_pred CCCCEEEecCCccch--HHHHHh----cCCCCeEEECCcccccCC
Q 021865 128 SNVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 128 ~~~DvVF~alp~~~s--~~~~~~----l~~g~~VIDlSadfRl~~ 166 (306)
.++|+||.|.|.... .++... +..++.|+-+++......
T Consensus 81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~ 125 (282)
T PRK05808 81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE 125 (282)
T ss_pred ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 789999999986554 344433 445777767777766653
No 191
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=94.23 E-value=0.063 Score=53.34 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=34.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCC-ceEEEEeccccCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQ 102 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~-~el~~l~S~~~aGk 102 (306)
|.||+|+|+||-+|.+.++.+.+||+ ++++.++..++...
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~ 41 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVAL 41 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHH
Confidence 47899999999999999999999986 89999987665543
No 192
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.20 E-value=0.19 Score=46.83 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=53.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCc-ccccc-CcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLP-TMVAV-KDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~-~~~~~-~~~~~~~~DvVF~alp~~~ 141 (306)
|||+|+|+ |.+|..+...|.+.. .++.++..+...-+.+.+..-.+...+.. ..... +..+..++|+||+|++...
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~~ 78 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAG-HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAYQ 78 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccccc
Confidence 58999995 999999999998642 45666653222111111100000000000 00001 1122367999999999776
Q ss_pred hHHHHHhc----CCCCeEEECCccc
Q 021865 142 TQEIIKGL----PKSLKIVDLSADF 162 (306)
Q Consensus 142 s~~~~~~l----~~g~~VIDlSadf 162 (306)
..++++.+ ..+..||.+..-+
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEEecCCC
Confidence 66655443 3467888876654
No 193
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.18 E-value=0.046 Score=51.43 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=61.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCC---CceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP---~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
+||++|| .|..|+.+++-|.+.. ..++... .++ ..+ +......+ +.. ...+. .+...++|+||+|++..
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~v~-~r~-~~~-~~~l~~~~-g~~--~~~~~-~e~~~~aDiIiLavkP~ 74 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQIICS-DLN-VSN-LKNASDKY-GIT--ITTNN-NEVANSADILILSIKPD 74 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCceEEEE-CCC-HHH-HHHHHHhc-CcE--EeCCc-HHHHhhCCEEEEEeChH
Confidence 5899999 9999999999887533 2234333 322 211 11110001 100 01111 12236799999999987
Q ss_pred chHHHHHhc----CCCCeEEECCcccccCCccchhhhcC
Q 021865 141 TTQEIIKGL----PKSLKIVDLSADFRLRDVSEYEEWYG 175 (306)
Q Consensus 141 ~s~~~~~~l----~~g~~VIDlSadfRl~~~~~y~~wY~ 175 (306)
...++++.+ ..+..|||+-+--.++. .++|.+
T Consensus 75 ~~~~vl~~l~~~~~~~~lvISi~AGi~i~~---l~~~l~ 110 (272)
T PRK12491 75 LYSSVINQIKDQIKNDVIVVTIAAGKSIKS---TENEFD 110 (272)
T ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCcHHH---HHHhcC
Confidence 777766543 45679999999888865 456654
No 194
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.11 Score=47.32 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=26.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.+|.|.||||.+|.++++.|++. ..+++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~ 35 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA-GYRVFGTS 35 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 357999999999999999999976 45666554
No 195
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.10 E-value=0.15 Score=49.51 Aligned_cols=90 Identities=13% Similarity=0.234 Sum_probs=55.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s- 142 (306)
++|+||| .|.+|+.+.+.|... ..++.... +.. ..... ... . ...+ ++.++++|+|++|+|....
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~-G~~V~~~d-~~~-~~~~~----~~~---~--~~~l-~ell~~aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYAGF-GATITAYD-AYP-NKDLD----FLT---Y--KDSV-KEAIKDADIISLHVPANKES 212 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEe-CCh-hHhhh----hhh---c--cCCH-HHHHhcCCEEEEeCCCcHHH
Confidence 5899999 799999999999865 34565553 221 11100 000 0 0111 2334789999999997653
Q ss_pred HH-----HHHhcCCCCeEEECCcccccCCc
Q 021865 143 QE-----IIKGLPKSLKIVDLSADFRLRDV 167 (306)
Q Consensus 143 ~~-----~~~~l~~g~~VIDlSadfRl~~~ 167 (306)
.. ..+.+..|..+|+.+----.+..
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~ 242 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTP 242 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHH
Confidence 22 22345678999998865555543
No 196
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.08 E-value=0.095 Score=52.32 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=52.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
..+|+|+|+ |-+|..+++.|.....-++... +++.. .+.+...++ . +.....+. .+.+.++|+||.|+|...
T Consensus 182 ~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~-~r~~~ra~~la~~~g---~-~~~~~~~~-~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 182 GKKVLVIGA-GEMGELVAKHLAEKGVRKITVA-NRTLERAEELAEEFG---G-EAIPLDEL-PEALAEADIVISSTGAPH 254 (423)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCCCCeEEEE-eCCHHHHHHHHHHcC---C-cEeeHHHH-HHHhccCCEEEECCCCCC
Confidence 368999996 9999999999986543344443 43321 111222221 0 11111111 223467999999998654
Q ss_pred h---HHHHHh-cC----CCCeEEECCc
Q 021865 142 T---QEIIKG-LP----KSLKIVDLSA 160 (306)
Q Consensus 142 s---~~~~~~-l~----~g~~VIDlSa 160 (306)
. .+.++. +. .+..+||++-
T Consensus 255 ~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 255 PIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred cEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 4 444443 21 3578999974
No 197
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=94.07 E-value=0.068 Score=50.82 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++|.|.|||||+|+.|++.|++. ..+++.+.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~ 31 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK-GYEVHGLI 31 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC-CCEEEEEe
Confidence 37999999999999999999875 34666664
No 198
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.07 E-value=0.11 Score=48.43 Aligned_cols=151 Identities=13% Similarity=0.211 Sum_probs=84.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCC-CceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
++|+||| -|.+|..+++++.+.| .+|++++..+... +..+.-.++.... ..+++ +.+++.|+++-|..+..-
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~e--k~~~~~~~~~~~~---~s~id-e~~~~~DlvVEaAS~~Av 73 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDEE--KAKELEASVGRRC---VSDID-ELIAEVDLVVEAASPEAV 73 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCHH--HHHHHHhhcCCCc---cccHH-HHhhccceeeeeCCHHHH
Confidence 5899999 6999999999999764 5677777643321 1111111222211 12232 223789999999999999
Q ss_pred HHHHHh-cCCCCeEEECC-cccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHhhhhh
Q 021865 143 QEIIKG-LPKSLKIVDLS-ADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (306)
Q Consensus 143 ~~~~~~-l~~g~~VIDlS-adfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~LaL~ 220 (306)
.+++++ |.+|+-+|=+| ++|- |+ ++... ..++++. .++++-.-+|. .+-+=+|+
T Consensus 74 ~e~~~~~L~~g~d~iV~SVGALa--d~--------------~l~er-l~~lak~-----~~~rv~~pSGA--iGGlD~l~ 129 (255)
T COG1712 74 REYVPKILKAGIDVIVMSVGALA--DE--------------GLRER-LRELAKC-----GGARVYLPSGA--IGGLDALA 129 (255)
T ss_pred HHHhHHHHhcCCCEEEEechhcc--Ch--------------HHHHH-HHHHHhc-----CCcEEEecCcc--chhHHHHH
Confidence 998865 57765444333 2232 32 22221 2222221 23555555554 34444444
Q ss_pred HHHhccCCCCceEEEEeeeecCccCccc
Q 021865 221 PLIQANLIQYRNIIIDAKSGVSGAGRGA 248 (306)
Q Consensus 221 PL~~~~li~~~~iiV~a~sgvSGAGr~~ 248 (306)
.+-- | .++.|..+|.-....-|...
T Consensus 130 aar~-g--~i~~V~lttrKpp~~lg~dl 154 (255)
T COG1712 130 AARV-G--GIEEVVLTTRKPPAELGIDL 154 (255)
T ss_pred Hhhc-C--CeeEEEEEeecChHHhCcCc
Confidence 4321 3 34578777776666555443
No 199
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.038 Score=49.71 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=27.2
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
+..++.|+||+|.+|..+++.|.++.. ++..+..
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r 43 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDV 43 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 346899999999999999999997744 5655543
No 200
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.99 E-value=0.1 Score=49.95 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=41.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEecccc--CCcc--cccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK--AGQS--IGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~--aGk~--l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
|||+|||+ |++|..+...|...... ++.++..+.. .|+. +.+..+.... . .+..-+.+++.++|+||+|.+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~--~-~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKP--V-RIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCC--e-EEeeCCHHHhCCCCEEEEccC
Confidence 48999997 99999999999876643 5665543221 1211 1111111100 0 111122345689999999998
Q ss_pred c
Q 021865 139 H 139 (306)
Q Consensus 139 ~ 139 (306)
.
T Consensus 77 ~ 77 (308)
T cd05292 77 A 77 (308)
T ss_pred C
Confidence 6
No 201
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.91 E-value=0.077 Score=48.07 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=65.7
Q ss_pred cccCccEEEEEccccHHHHHHHHHHh-cCCCceEEEEe--ccccCCcccccccCCcccCCCccccccCcccCCCCCEEEe
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMT--ADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~-~HP~~el~~l~--S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~ 135 (306)
..++|.++.||| -|-.|..|+..-- .+-.++++.+. .+...|+.+.+ +...++.+++.. ... .++|++++
T Consensus 80 g~~~~tnviiVG-~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~----v~V~~~d~le~~-v~~-~dv~iaiL 152 (211)
T COG2344 80 GQDKTTNVIIVG-VGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD----VPVYDLDDLEKF-VKK-NDVEIAIL 152 (211)
T ss_pred CCCcceeEEEEc-cChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC----eeeechHHHHHH-HHh-cCccEEEE
Confidence 346778999999 5788888776433 46777887765 35566665553 211222222211 001 37999999
Q ss_pred cCCccchHHHHHhc-CCCCeEEECCcccccC
Q 021865 136 CLPHGTTQEIIKGL-PKSLKIVDLSADFRLR 165 (306)
Q Consensus 136 alp~~~s~~~~~~l-~~g~~VIDlSadfRl~ 165 (306)
|.|...|++.+..| ++|++-|=+=+--|++
T Consensus 153 tVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l~ 183 (211)
T COG2344 153 TVPAEHAQEVADRLVKAGVKGILNFTPVRLQ 183 (211)
T ss_pred EccHHHHHHHHHHHHHcCCceEEeccceEec
Confidence 99999999999988 8898877444444554
No 202
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.91 E-value=0.16 Score=48.86 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=51.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
-.+|+|||.+|.+|.-+.++|.+. .+.++..-++.. + + .+...++|+||+|++...
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~-g~tVtv~~~rT~---------------~---l----~e~~~~ADIVIsavg~~~- 213 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA-NATVTIAHSRTR---------------D---L----PAVCRRADILVAAVGRPE- 213 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC-CCEEEEECCCCC---------------C---H----HHHHhcCCEEEEecCChh-
Confidence 468999999999999999999854 345554422211 1 1 122357999999998743
Q ss_pred HHHHHh-cCCCCeEEECCccc
Q 021865 143 QEIIKG-LPKSLKIVDLSADF 162 (306)
Q Consensus 143 ~~~~~~-l~~g~~VIDlSadf 162 (306)
.+... +..|..|||.+-.+
T Consensus 214 -~v~~~~lk~GavVIDvGin~ 233 (296)
T PRK14188 214 -MVKGDWIKPGATVIDVGINR 233 (296)
T ss_pred -hcchheecCCCEEEEcCCcc
Confidence 22233 47799999998765
No 203
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.86 E-value=0.13 Score=52.62 Aligned_cols=174 Identities=14% Similarity=0.073 Sum_probs=86.8
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccC-C---CccccccCcccCCCCCEEEec
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQ-D---LPTMVAVKDADFSNVDAVFCC 136 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~-~---~~~~~~~~~~~~~~~DvVF~a 136 (306)
..+.+|++|| .|-.|..+.+-|+++- +++...-.....-+.+.+..... +. . .....++ .+.++++|+||+|
T Consensus 4 ~~~~~IG~IG-LG~MG~~mA~nL~~~G-~~V~V~NRt~~k~~~l~~~~~~~-Ga~~~~~a~s~~e~-v~~l~~~dvIi~~ 79 (493)
T PLN02350 4 AALSRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKE-GNLPLYGFKDPEDF-VLSIQKPRSVIIL 79 (493)
T ss_pred CCCCCEEEEe-eHHHHHHHHHHHHhCC-CeEEEECCCHHHHHHHHHhhhhc-CCcccccCCCHHHH-HhcCCCCCEEEEE
Confidence 3456899999 9999999999999764 45555432111111221100000 10 0 0011111 1123459999999
Q ss_pred CCccchHH-H----HHhcCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCCh
Q 021865 137 LPHGTTQE-I----IKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCY 211 (306)
Q Consensus 137 lp~~~s~~-~----~~~l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy 211 (306)
+|++...+ + .+.+.+|..|||.|.-+--+.... .++... +-+ ...+--|-|=|+-- +.+..| -+|+-
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~-~~~l~~-~Gi-~fldapVSGG~~gA----~~G~~i-m~GG~ 151 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERR-IKEAAE-KGL-LYLGMGVSGGEEGA----RNGPSL-MPGGS 151 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHH-HHHHHH-cCC-eEEeCCCcCCHHHh----cCCCeE-EecCC
Confidence 99988743 2 345567999999988653221111 111110 000 01111233444321 223333 66765
Q ss_pred HHHHhhhhhHHHhccCCCCc--eEEEEeeeecCccCcccc
Q 021865 212 PTSIQLPLVPLIQANLIQYR--NIIIDAKSGVSGAGRGAK 249 (306)
Q Consensus 212 ~Ta~~LaL~PL~~~~li~~~--~iiV~a~sgvSGAGr~~~ 249 (306)
..+ .-.+.|+++. +..+ .--...+-|-.|+|...+
T Consensus 152 ~~a-~~~v~pvL~~--ia~k~~~~~~v~~vG~~GaG~~vK 188 (493)
T PLN02350 152 FEA-YKNIEDILEK--VAAQVDDGPCVTYIGPGGAGNFVK 188 (493)
T ss_pred HHH-HHHHHHHHHH--HhhhcCCCCcEEEeCCcCHHHHHH
Confidence 544 4456888875 2211 000124667677776553
No 204
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.85 E-value=0.068 Score=43.35 Aligned_cols=83 Identities=13% Similarity=0.255 Sum_probs=49.2
Q ss_pred ccHHHHHHHHHHhcCC---CceEEEEecccc-CCcccccccCCcccCCCccccccCcccCC--CCCEEEecCCccchHHH
Q 021865 72 SGYTGAEIVRLLANHP---YFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLPHGTTQEI 145 (306)
Q Consensus 72 TGyvG~ELlrlL~~HP---~~el~~l~S~~~-aGk~l~~~~p~l~~~~~~~~~~~~~~~~~--~~DvVF~alp~~~s~~~ 145 (306)
.|-+|+.|+++|.++. ++++..+..++. ..+......+ ... ...++ ++-++ +.|+|+=|++++...++
T Consensus 2 ~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~---~~~--~~~~~-~~~~~~~~~dvvVE~t~~~~~~~~ 75 (117)
T PF03447_consen 2 FGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFP---DEA--FTTDL-EELIDDPDIDVVVECTSSEAVAEY 75 (117)
T ss_dssp -SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHT---HSC--EESSH-HHHHTHTT-SEEEE-SSCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcc---ccc--ccCCH-HHHhcCcCCCEEEECCCchHHHHH
Confidence 6999999999999876 788888876650 1111110000 000 01111 11112 69999999998888887
Q ss_pred HH-hcCCCCeEEECCc
Q 021865 146 IK-GLPKSLKIVDLSA 160 (306)
Q Consensus 146 ~~-~l~~g~~VIDlSa 160 (306)
.+ .++.|+.||-.|-
T Consensus 76 ~~~~L~~G~~VVt~nk 91 (117)
T PF03447_consen 76 YEKALERGKHVVTANK 91 (117)
T ss_dssp HHHHHHTTCEEEES-H
T ss_pred HHHHHHCCCeEEEECH
Confidence 65 4689999997654
No 205
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.83 E-value=0.077 Score=49.84 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=51.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccc----cc-CCcccCCCc---------ccc-ccC-cccC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS----VF-PHLISQDLP---------TMV-AVK-DADF 127 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~----~~-p~l~~~~~~---------~~~-~~~-~~~~ 127 (306)
.||+|||+ |..|..+...|++. ..++..+..+...-+.+.+ .+ +.+...... .+. ..+ .+.+
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 57999996 99999999998864 3445555322111111110 00 000000000 000 011 2345
Q ss_pred CCCCEEEecCCccchH--HHH----HhcCCCCeEEECCcccccC
Q 021865 128 SNVDAVFCCLPHGTTQ--EII----KGLPKSLKIVDLSADFRLR 165 (306)
Q Consensus 128 ~~~DvVF~alp~~~s~--~~~----~~l~~g~~VIDlSadfRl~ 165 (306)
+++|+||.|+|..... .+. +.+..++.+..+++.....
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~ 123 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPT 123 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 7899999999987652 232 2335566664445545544
No 206
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=93.73 E-value=0.19 Score=50.95 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=35.0
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcCCC-ceEEEEeccccCC
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAG 101 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~HP~-~el~~l~S~~~aG 101 (306)
...+.||+|+|+||-+|...++++.+||+ ++++.++..++..
T Consensus 54 ~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~ 96 (454)
T PLN02696 54 WDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVT 96 (454)
T ss_pred cCCccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHH
Confidence 34457999999999999999999999987 7898887655544
No 207
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.71 E-value=0.042 Score=48.70 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=26.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|+||||.+|..+++.|+++ ..++..+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 67999999999999999999976 56766664
No 208
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.64 E-value=0.13 Score=52.29 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=26.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcC-CCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~H-P~~el~~l~ 95 (306)
||||+|+| .||+|.-+.-.|+++ ..+++..+-
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 68999998 899999999999976 356776664
No 209
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.60 E-value=0.11 Score=45.88 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=26.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
.++.|.|+||++|+++++.|.+. ..+++.++.
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~ 37 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQ-GANVVINYA 37 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEeC
Confidence 58999999999999999999865 456655543
No 210
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.59 E-value=0.24 Score=47.34 Aligned_cols=73 Identities=15% Similarity=0.292 Sum_probs=50.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc--c
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~--~ 141 (306)
.+|.|+|+++.+|.-|..+|.+. ...++.+-++. .+ + .+...++|+||.|.+.. +
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~-gatVtv~~s~t---------------~~---l----~~~~~~ADIVIsAvg~p~~i 215 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK-NASVTILHSRS---------------KD---M----ASYLKDADVIVSAVGKPGLV 215 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCc---------------hh---H----HHHHhhCCEEEECCCCCccc
Confidence 68999999999999999999864 35555554321 01 1 12236799999999763 2
Q ss_pred hHHHHHhcCCCCeEEECCccc
Q 021865 142 TQEIIKGLPKSLKIVDLSADF 162 (306)
Q Consensus 142 s~~~~~~l~~g~~VIDlSadf 162 (306)
..+ .+..|..|||.+...
T Consensus 216 ~~~---~vk~gavVIDvGi~~ 233 (286)
T PRK14175 216 TKD---VVKEGAVIIDVGNTP 233 (286)
T ss_pred CHH---HcCCCcEEEEcCCCc
Confidence 222 246789999988753
No 211
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.56 E-value=0.064 Score=47.91 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=26.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
.++.|.||||++|.+|++.|.++.. +++.+..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r 33 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDL 33 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 4799999999999999999987643 6666643
No 212
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.55 E-value=0.32 Score=46.70 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=55.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..+|+|+| .|-+|+++.++|... .+++.... ++.... .... ....+ ++.+.++|+|++++|....
T Consensus 122 gktvgIiG-~G~IG~~vA~~l~af-G~~V~~~~-r~~~~~-------~~~~----~~~~l-~ell~~aDiv~~~lp~t~~ 186 (303)
T PRK06436 122 NKSLGILG-YGGIGRRVALLAKAF-GMNIYAYT-RSYVND-------GISS----IYMEP-EDIMKKSDFVLISLPLTDE 186 (303)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEC-CCCccc-------Cccc----ccCCH-HHHHhhCCEEEECCCCCch
Confidence 36899999 799999999988754 45665553 221100 0000 01112 2234689999999996544
Q ss_pred ------HHHHHhcCCCCeEEECCcccccCCc
Q 021865 143 ------QEIIKGLPKSLKIVDLSADFRLRDV 167 (306)
Q Consensus 143 ------~~~~~~l~~g~~VIDlSadfRl~~~ 167 (306)
.+....+..|..+|+.|--=-.+..
T Consensus 187 T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~ 217 (303)
T PRK06436 187 TRGMINSKMLSLFRKGLAIINVARADVVDKN 217 (303)
T ss_pred hhcCcCHHHHhcCCCCeEEEECCCccccCHH
Confidence 2334456778999998765544443
No 213
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.53 E-value=0.21 Score=48.36 Aligned_cols=91 Identities=12% Similarity=0.208 Sum_probs=54.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
++|+||| .|.+|+.+.+.|...-..++... .+ ...+.... . ... ...+ ++.+.++|+|++|+|.....
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~~-d~-~~~~~~~~----~--~~~--~~~l-~ell~~aDvIvl~lP~t~~t 214 (332)
T PRK08605 147 LKVAVIG-TGRIGLAVAKIFAKGYGSDVVAY-DP-FPNAKAAT----Y--VDY--KDTI-EEAVEGADIVTLHMPATKYN 214 (332)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCEEEEE-CC-CccHhHHh----h--ccc--cCCH-HHHHHhCCEEEEeCCCCcch
Confidence 6899999 79999999999953224455443 22 22111110 0 000 1112 23346899999999965443
Q ss_pred H------HHHhcCCCCeEEECCcccccCC
Q 021865 144 E------IIKGLPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 144 ~------~~~~l~~g~~VIDlSadfRl~~ 166 (306)
+ ..+.+..|..+||.|----.+.
T Consensus 215 ~~li~~~~l~~mk~gailIN~sRG~~vd~ 243 (332)
T PRK08605 215 HYLFNADLFKHFKKGAVFVNCARGSLVDT 243 (332)
T ss_pred hhhcCHHHHhcCCCCcEEEECCCCcccCH
Confidence 2 2344567999999987555543
No 214
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.52 E-value=0.07 Score=47.42 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=26.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++|.|.||||++|..|++.|.++- .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~ 37 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVD 37 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 3579999999999999999998763 4666654
No 215
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.51 E-value=0.099 Score=49.91 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=25.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++|.|.||||++|..|++.|++.. .+++.+.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 3689999999999999999998653 4565554
No 216
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.49 E-value=0.12 Score=47.68 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=26.4
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++.+|.|.||||.+|.++++.|.++ ..+++.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~-G~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSD-GWRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEE
Confidence 3457999999999999999999875 45666554
No 217
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.46 E-value=0.066 Score=50.22 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=26.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||||.+|.++++.|+++ ..++..+.
T Consensus 41 k~vlItGasggIG~~la~~La~~-G~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR-GATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEE
Confidence 67999999999999999999876 45666654
No 218
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.43 E-value=0.17 Score=48.68 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=51.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|+|||.+|.+|.-+.++|.+. ...++..-+++. + . .+...++|+||+|++..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~~t~---------------~---l----~e~~~~ADIVIsavg~~--- 213 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHSRST---------------D---A----KALCRQADIVVAAVGRP--- 213 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEECCCCC---------------C---H----HHHHhcCCEEEEecCCh---
Confidence 68999999999999999999864 345555532210 1 1 12235799999999865
Q ss_pred HHH-Hh-cCCCCeEEECCcccc
Q 021865 144 EII-KG-LPKSLKIVDLSADFR 163 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadfR 163 (306)
+++ +. +..|..|||.|-.+-
T Consensus 214 ~~v~~~~ik~GaiVIDvgin~~ 235 (301)
T PRK14194 214 RLIDADWLKPGAVVIDVGINRI 235 (301)
T ss_pred hcccHhhccCCcEEEEeccccc
Confidence 233 22 477999999987663
No 219
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.40 E-value=0.25 Score=48.98 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=50.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccc-----ccCCccc---CCCcccc-ccCc-ccCCCCCEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-----VFPHLIS---QDLPTMV-AVKD-ADFSNVDAV 133 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~-----~~p~l~~---~~~~~~~-~~~~-~~~~~~DvV 133 (306)
|||+|+| +||+|.-+..+|+. .++++.+--+...=+.+.+ .-|.+.. .....+. ..+. +...++|+|
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 4899998 99999999988774 3566665422211111111 0111110 0000111 1111 224689999
Q ss_pred EecCCccch-----------HHHHH---hcCCCCeEEECCccc
Q 021865 134 FCCLPHGTT-----------QEIIK---GLPKSLKIVDLSADF 162 (306)
Q Consensus 134 F~alp~~~s-----------~~~~~---~l~~g~~VIDlSadf 162 (306)
|.|+|+... ...+. .+..|..||+-|--.
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~ 120 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVP 120 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence 999996621 11111 145688899877633
No 220
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.37 E-value=0.1 Score=50.29 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=52.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc-CCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~-aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
..+++|+| +|-.|...++.|.....++-+.+.+|+. ..+.+.+.+....+.+.....++ ++.+.++|+|++|+|...
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~-~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDP-RAAMSGADIIVTTTPSET 206 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCH-HHHhccCCEEEEecCCCC
Confidence 46899999 5778888888776434455445545432 22222221111001111011111 233578999999998753
Q ss_pred hHHHH--HhcCCCCeEEECCcc
Q 021865 142 TQEII--KGLPKSLKIVDLSAD 161 (306)
Q Consensus 142 s~~~~--~~l~~g~~VIDlSad 161 (306)
.++ ..++.|..|.+..+|
T Consensus 207 --p~i~~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 --PILHAEWLEPGQHVTAMGSD 226 (326)
T ss_pred --cEecHHHcCCCcEEEeeCCC
Confidence 333 235778888877765
No 221
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.35 E-value=0.11 Score=51.72 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=52.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
..+|+|+|+ |-+|..+++.|..+...++..+ +++.. ...+.+.+. .... ..+++ .+.+.++|+||.|++...
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~-~rs~~ra~~la~~~g---~~~i-~~~~l-~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVGKILIA-NRTYERAEDLAKELG---GEAV-KFEDL-EEYLAEADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCEEEEE-eCCHHHHHHHHHHcC---CeEe-eHHHH-HHHHhhCCEEEECCCCCC
Confidence 368999996 9999999999988654455554 33221 111222111 1000 11111 223468999999987554
Q ss_pred h---HHHHHhc-C---CCCeEEECC
Q 021865 142 T---QEIIKGL-P---KSLKIVDLS 159 (306)
Q Consensus 142 s---~~~~~~l-~---~g~~VIDlS 159 (306)
. .+.++.. . ....|||++
T Consensus 253 ~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 253 PIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred ceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 3 4555443 2 245899997
No 222
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=93.33 E-value=0.12 Score=49.93 Aligned_cols=95 Identities=9% Similarity=0.119 Sum_probs=55.2
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCC-cccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aG-k~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
+..+++||| +|..|+..++.|.....++-+.+.+++... +.+.+....+ +.......+. ++..+++|+|++|+|..
T Consensus 127 ~~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~-~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDP-REAVEGCDILVTTTPSR 203 (325)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCH-HHHhccCCEEEEecCCC
Confidence 347899998 888999888888776667766666554322 1221111111 1011011111 23347899999999875
Q ss_pred chHHHH--HhcCCCCeEEECCcc
Q 021865 141 TTQEII--KGLPKSLKIVDLSAD 161 (306)
Q Consensus 141 ~s~~~~--~~l~~g~~VIDlSad 161 (306)
. .++ ..++.|..|.-.+++
T Consensus 204 ~--P~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 204 K--PVVKADWVSEGTHINAIGAD 224 (325)
T ss_pred C--cEecHHHcCCCCEEEecCCC
Confidence 3 332 235778887766654
No 223
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.31 E-value=0.22 Score=41.00 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=42.5
Q ss_pred cEEEEEccc---cHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGAT---GyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
.+|+|+||| +-.|..+++.|.+ ..+++..+--+ ++.+. + ...+..+++ .-..+|++++++|..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~Vnp~---~~~i~-------G--~~~y~sl~e-~p~~iDlavv~~~~~ 66 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPVNPK---GGEIL-------G--IKCYPSLAE-IPEPIDLAVVCVPPD 66 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEESTT---CSEET-------T--EE-BSSGGG-CSST-SEEEE-S-HH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHh-CCCEEEEECCC---ceEEC-------c--EEeeccccC-CCCCCCEEEEEcCHH
Confidence 369999998 7789999999988 33566666321 12221 1 001112211 125799999999999
Q ss_pred chHHHHHhc-CCCC
Q 021865 141 TTQEIIKGL-PKSL 153 (306)
Q Consensus 141 ~s~~~~~~l-~~g~ 153 (306)
...++++.+ +.|+
T Consensus 67 ~~~~~v~~~~~~g~ 80 (116)
T PF13380_consen 67 KVPEIVDEAAALGV 80 (116)
T ss_dssp HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHcCC
Confidence 999988776 4453
No 224
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.30 E-value=0.26 Score=47.77 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=42.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEecc--ccCCcccc--cccCCcccCCCccccc-cCcccCCCCCEEEecC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTAD--RKAGQSIG--SVFPHLISQDLPTMVA-VKDADFSNVDAVFCCL 137 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~--~~aGk~l~--~~~p~l~~~~~~~~~~-~~~~~~~~~DvVF~al 137 (306)
+||+|+|| |.+|+.++-.|.+..-. |++++--. ...|..+. +.-+.+. .+. .+.. -+-++++++|+|+++.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~-~~~-~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG-SDV-KITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc-Cce-EEecCCChhhhcCCCEEEEeC
Confidence 58999999 99999999999877766 77776432 22222221 1111110 010 1111 1134568899998887
No 225
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.23 E-value=0.044 Score=49.57 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=26.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|.++.|+||||.+|.+|++.|++.. .++..+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 32 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG-WRVGAYD 32 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 4679999999999999999998764 4666654
No 226
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=93.22 E-value=0.16 Score=45.06 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=24.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcC-CCceEEEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLM 94 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~H-P~~el~~l 94 (306)
|+|.|.||||.+|.++.+.|++. +...+...
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~ 32 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHAT 32 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 48999999999999999999865 45555443
No 227
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.19 E-value=0.16 Score=47.45 Aligned_cols=92 Identities=13% Similarity=0.278 Sum_probs=51.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccc-cCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~-~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
..++.|+|+ |-+|+.+++.|.... .++..+ .|. ...+.+.+.+... + ... ....++....++|+|+.|+|.+.
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g-~~v~v~-~R~~~~~~~la~~~~~~-~-~~~-~~~~~~~~~~~~DivInatp~gm 190 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKAD-CNVIIA-NRTVSKAEELAERFQRY-G-EIQ-AFSMDELPLHRVDLIINATSAGM 190 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCC-CEEEEE-eCCHHHHHHHHHHHhhc-C-ceE-EechhhhcccCccEEEECCCCCC
Confidence 357999998 789999999998764 465554 332 1112222211110 0 000 01111222347899999999874
Q ss_pred hHHH------HHhcCCCCeEEECCc
Q 021865 142 TQEI------IKGLPKSLKIVDLSA 160 (306)
Q Consensus 142 s~~~------~~~l~~g~~VIDlSa 160 (306)
.... ...+..+..|+|++-
T Consensus 191 ~~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 191 SGNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEecc
Confidence 3221 123466788999854
No 228
>PLN02583 cinnamoyl-CoA reductase
Probab=93.17 E-value=0.14 Score=47.92 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..+|.|.||||++|..|++.|+++- .+++.+.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRG-YTVHAAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 3579999999999999999998753 4666654
No 229
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.13 E-value=0.18 Score=47.79 Aligned_cols=103 Identities=16% Similarity=0.257 Sum_probs=60.9
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcc----cccccCCccc-CCC---------cccc-ccCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS----IGSVFPHLIS-QDL---------PTMV-AVKDAD 126 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~----l~~~~p~l~~-~~~---------~~~~-~~~~~~ 126 (306)
.+.||+|||+ |..|..+...|+.+ .++++++-.....-+. +.....++.. ..+ ..+. ..+.++
T Consensus 4 ~~~~V~ViGa-G~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 4 AIQRVGVVGA-GQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred CccEEEEEcc-cHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 3458999996 99999999998866 5566666432221111 1111111100 000 0000 111234
Q ss_pred CCCCCEEEecCCccchHH--HH---Hh-c-CCCCeEEECCcccccCC
Q 021865 127 FSNVDAVFCCLPHGTTQE--II---KG-L-PKSLKIVDLSADFRLRD 166 (306)
Q Consensus 127 ~~~~DvVF~alp~~~s~~--~~---~~-l-~~g~~VIDlSadfRl~~ 166 (306)
++++|+||-|.|.....+ +. .. + ..++.++++|+.+...+
T Consensus 82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~ 128 (286)
T PRK07819 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK 128 (286)
T ss_pred hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 578999999999887743 22 22 3 56899999999988765
No 230
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.13 E-value=0.15 Score=51.17 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=28.5
Q ss_pred ccccCccEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 58 QKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 58 ~~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
.+.-++++|.|.||||++|+.|++.|++. ..+++.+
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~ 77 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKR-GYEVAIV 77 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEE
Confidence 34445678999999999999999999865 3566665
No 231
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.11 E-value=0.069 Score=47.34 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=25.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
+.++.|+||||.+|.+|++.|+++ ..+++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE
Confidence 458999999999999999999876 4566555
No 232
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.05 E-value=0.22 Score=50.75 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=55.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccccc--CCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~--p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|.+|+||| .|..|..|.+.|.++-. ++.....++..-+.+.+.. +.........++++ ...+.+.|+||++++++
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~-v~~l~~~d~Iil~v~~~ 77 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEEL-VNSLKKPRKVILLIKAG 77 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHH-HhcCCCCCEEEEEeCCh
Confidence 46899999 89999999999987643 5555533222222221100 00000000011111 11123589999998877
Q ss_pred ch-HHH----HHhcCCCCeEEECCccc
Q 021865 141 TT-QEI----IKGLPKSLKIVDLSADF 162 (306)
Q Consensus 141 ~s-~~~----~~~l~~g~~VIDlSadf 162 (306)
.. .++ .+.+..|..|||.+.-+
T Consensus 78 ~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 78 EAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 55 333 34567799999998865
No 233
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.04 E-value=0.21 Score=47.18 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=25.0
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.||+|||+ |..|..+...|.+. ..++..+.
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~-g~~V~~~d 34 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARK-GLQVVLID 34 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhC-CCeEEEEE
Confidence 34578999995 99999999999864 34565553
No 234
>PRK08264 short chain dehydrogenase; Validated
Probab=93.03 E-value=0.18 Score=44.83 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|+||||.+|.++++.|+++-.-++..+.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 57999999999999999999976432455554
No 235
>PRK07574 formate dehydrogenase; Provisional
Probab=93.02 E-value=0.31 Score=48.43 Aligned_cols=94 Identities=16% Similarity=0.263 Sum_probs=54.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s- 142 (306)
++|+||| .|-+|+++.+.|..+ .+++.... +.......... + + ......+ ++.+..+|+|++++|-...
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~f-G~~V~~~d-r~~~~~~~~~~---~-g--~~~~~~l-~ell~~aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPF-DVKLHYTD-RHRLPEEVEQE---L-G--LTYHVSF-DSLVSVCDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEC-CCCCchhhHhh---c-C--ceecCCH-HHHhhcCCEEEEcCCCCHHH
Confidence 6899999 699999999999865 34555442 22111111100 0 0 0001112 2334789999999994443
Q ss_pred H-----HHHHhcCCCCeEEECCcccccCCc
Q 021865 143 Q-----EIIKGLPKSLKIVDLSADFRLRDV 167 (306)
Q Consensus 143 ~-----~~~~~l~~g~~VIDlSadfRl~~~ 167 (306)
. +....+..|..+|+.+----.+..
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~ 292 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRD 292 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHH
Confidence 2 333455778999988765544433
No 236
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.97 E-value=0.14 Score=48.08 Aligned_cols=91 Identities=16% Similarity=0.276 Sum_probs=52.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|+ |-+|+.+++.|....-.++..+..+....+.+.+.+.......+ .. +. ...+.++|+|+.|+|.+...
T Consensus 124 k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~-~~-~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 124 KRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DL-EL-QEELADFDLIINATSAGMSG 199 (278)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cc-cc-hhccccCCEEEECCcCCCCC
Confidence 57999997 99999999999977655665554222222233322221100011 00 11 13346799999999988642
Q ss_pred -----HHH-HhcCCCCeEEEC
Q 021865 144 -----EII-KGLPKSLKIVDL 158 (306)
Q Consensus 144 -----~~~-~~l~~g~~VIDl 158 (306)
.+. ..+..+..|+|+
T Consensus 200 ~~~~~~~~~~~l~~~~~v~Di 220 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDM 220 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEe
Confidence 111 234557788886
No 237
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.94 E-value=0.16 Score=48.67 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=41.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc--CCcccccccCCcccCCCccccc-cCcccCCCCCEEEecCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~--aGk~l~~~~p~l~~~~~~~~~~-~~~~~~~~~DvVF~alp 138 (306)
+||+|||+ |++|..+...|+.+...+++++-.... .|+.+...++.........+.. .+.+++.++|+||+|.+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCC
Confidence 58999996 999999999998754446555542211 2222211222111100011211 12234678999999998
No 238
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.92 E-value=0.08 Score=47.36 Aligned_cols=32 Identities=22% Similarity=0.103 Sum_probs=26.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
.+|.|.|+||++|.+|++.|+++ ..++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~-g~~v~~~~r 36 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE-GAKVVIADL 36 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCeEEEEeC
Confidence 57999999999999999999876 456666643
No 239
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.92 E-value=0.15 Score=48.99 Aligned_cols=97 Identities=9% Similarity=0.083 Sum_probs=53.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
..+++|+| +|..|...++.|.....++.+.+.+|... .+.+.+.+....+.+...+.+. ++.+.++|+|++|+|+..
T Consensus 127 ~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 127 AKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSA-DEAIEEADIIVTVTNAKT 204 (325)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCH-HHHHhcCCEEEEccCCCC
Confidence 46899999 66667667776665556666666655422 1222221110001111111111 223468999999999874
Q ss_pred hHHHHHhcCCCCeEEECCccc
Q 021865 142 TQEIIKGLPKSLKIVDLSADF 162 (306)
Q Consensus 142 s~~~~~~l~~g~~VIDlSadf 162 (306)
. .+...++.|..|+-..++.
T Consensus 205 p-~i~~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 205 P-VFSEKLKKGVHINAVGSFM 224 (325)
T ss_pred c-chHHhcCCCcEEEecCCCC
Confidence 3 2334457888887666643
No 240
>PRK06182 short chain dehydrogenase; Validated
Probab=92.90 E-value=0.093 Score=48.00 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=25.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.++.|.||||.+|+++.+.|.+. ..++..+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~-G~~V~~~~ 34 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ-GYTVYGAA 34 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence 467999999999999999999865 34666554
No 241
>PRK06141 ornithine cyclodeaminase; Validated
Probab=92.89 E-value=0.12 Score=49.67 Aligned_cols=96 Identities=14% Similarity=0.252 Sum_probs=53.2
Q ss_pred CccEEEEEccccHHHHHHHHHHhc-CCCceEEEEeccc-cCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADR-KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~-HP~~el~~l~S~~-~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
+..+|+|+| +|-.|...++.+.. ++..++... +|+ ...+.+.+.+... +......... .+.+.++|+|++|++.
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~-~Rs~~~a~~~a~~~~~~-g~~~~~~~~~-~~av~~aDIVi~aT~s 199 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPIKQVRVW-GRDPAKAEALAAELRAQ-GFDAEVVTDL-EAAVRQADIISCATLS 199 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEE-cCCHHHHHHHHHHHHhc-CCceEEeCCH-HHHHhcCCEEEEeeCC
Confidence 346899999 68899988875554 665555544 432 2222332222111 1011111111 2234689999999987
Q ss_pred cchHHHH--HhcCCCCeEEECCccccc
Q 021865 140 GTTQEII--KGLPKSLKIVDLSADFRL 164 (306)
Q Consensus 140 ~~s~~~~--~~l~~g~~VIDlSadfRl 164 (306)
. ..++ ..+..|. +||.++.+.-
T Consensus 200 ~--~pvl~~~~l~~g~-~i~~ig~~~~ 223 (314)
T PRK06141 200 T--EPLVRGEWLKPGT-HLDLVGNFTP 223 (314)
T ss_pred C--CCEecHHHcCCCC-EEEeeCCCCc
Confidence 6 2322 2346676 7888886543
No 242
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=92.86 E-value=0.11 Score=51.95 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=50.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccc-cCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~-~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
.||.|+|| |-+|+.+++.|..+..-++... +|+ ...+.+.+.++. .....++++ .+.+.++|+||+|++....
T Consensus 182 kkvlviGa-G~~a~~va~~L~~~g~~~I~V~-nRt~~ra~~La~~~~~---~~~~~~~~l-~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGA-GQTGELLFRHVTALAPKQIMLA-NRTIEKAQKITSAFRN---ASAHYLSEL-PQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCCEEEEE-CCCHHHHHHHHHHhcC---CeEecHHHH-HHHhccCCEEEECcCCCCe
Confidence 57999997 8888999999987755455444 443 222334333321 111111211 2335689999999975432
Q ss_pred HHHHHhc-CCCCeEEECCc
Q 021865 143 QEIIKGL-PKSLKIVDLSA 160 (306)
Q Consensus 143 ~~~~~~l-~~g~~VIDlSa 160 (306)
---.... .+...+|||+-
T Consensus 256 vi~~~~~~~~~~~~iDLav 274 (414)
T PRK13940 256 IVTCKYVGDKPRVFIDISI 274 (414)
T ss_pred eECHHHhCCCCeEEEEeCC
Confidence 1001112 23457889864
No 243
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.83 E-value=0.75 Score=43.73 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=50.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCccc--CC--Ccccccc-CcccCCCCCEEEecC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS--QD--LPTMVAV-KDADFSNVDAVFCCL 137 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~--~~--~~~~~~~-~~~~~~~~DvVF~al 137 (306)
++||+|+| .|-+|.-+...|.+. ..++.++.. +. .+.+.+..-.+.. .+ ....... +.++....|+||+|+
T Consensus 5 ~m~I~IiG-~GaiG~~lA~~L~~~-g~~V~~~~r-~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIG-TGAIGGFYGAMLARA-GFDVHFLLR-SD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL 80 (313)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEEe-CC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEe
Confidence 47999998 799999999999864 245666643 22 1111110000000 00 0000001 112345789999999
Q ss_pred CccchHHHHHh----cCCCCeEEECCc
Q 021865 138 PHGTTQEIIKG----LPKSLKIVDLSA 160 (306)
Q Consensus 138 p~~~s~~~~~~----l~~g~~VIDlSa 160 (306)
+.....+..+. +..+..||.+-.
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecC
Confidence 97766554433 344566776543
No 244
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.82 E-value=0.3 Score=47.33 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=55.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..+|+||| .|-+|+++.+.|...- .++... ++... ...... + +.. ...+ ++.+.++|+|++|+|-...
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G-~~V~~~-d~~~~-~~~~~~---~-~~~---~~~l-~ell~~aDiV~l~lP~t~~ 217 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFG-MRILYY-SRTRK-PEAEKE---L-GAE---YRPL-EELLRESDFVSLHVPLTKE 217 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCC-CEEEEE-CCCCC-hhhHHH---c-CCE---ecCH-HHHHhhCCEEEEeCCCChH
Confidence 36899999 5999999999998663 455444 33211 111000 0 100 1112 2334789999999995442
Q ss_pred ------HHHHHhcCCCCeEEECCcccccCC
Q 021865 143 ------QEIIKGLPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 143 ------~~~~~~l~~g~~VIDlSadfRl~~ 166 (306)
.+....+..|..+|+.|----.+.
T Consensus 218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 218 TYHMINEERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred HhhccCHHHHhcCCCCeEEEECcCchhcCH
Confidence 233445677999999876554443
No 245
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.71 E-value=0.37 Score=43.03 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||++|..+++.|.++- .+++.+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G-~~V~~~~ 37 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG-AHVVVNY 37 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998753 4665554
No 246
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=92.65 E-value=0.32 Score=45.16 Aligned_cols=92 Identities=15% Similarity=0.249 Sum_probs=52.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc---eEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF---GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~---el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
|||+||| .|..|+.+++-|.+.... ++.. ..++. .+ +. ... ..+. .+...++|+||+|.+..
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~-~~-~~-----~~~-----~~~~-~~~~~~~D~Vilavkp~ 68 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIGKENIYY-HTPSK-KN-TP-----FVY-----LQSN-EELAKTCDIIVLAVKPD 68 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCCcceEEE-ECCCh-hc-CC-----eEE-----eCCh-HHHHHhCCEEEEEeCHH
Confidence 6899999 799999999999865322 2332 22221 11 10 000 0010 11235789999999988
Q ss_pred chHHHHHhc----CCCCeEEECCcccccCCccchhhhc
Q 021865 141 TTQEIIKGL----PKSLKIVDLSADFRLRDVSEYEEWY 174 (306)
Q Consensus 141 ~s~~~~~~l----~~g~~VIDlSadfRl~~~~~y~~wY 174 (306)
...++.+.+ ..+..|-|+++ ...+ ..++|.
T Consensus 69 ~~~~vl~~i~~~l~~~~iIS~~aG-i~~~---~l~~~~ 102 (260)
T PTZ00431 69 LAGKVLLEIKPYLGSKLLISICGG-LNLK---TLEEMV 102 (260)
T ss_pred HHHHHHHHHHhhccCCEEEEEeCC-ccHH---HHHHHc
Confidence 877766554 23344445555 3333 345554
No 247
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=92.58 E-value=0.48 Score=46.54 Aligned_cols=107 Identities=18% Similarity=0.361 Sum_probs=66.2
Q ss_pred cccCccEEEEEccccHHHHHHHHHHh----cCCCce--EE-EEeccccCC--ccccc----ccCC---cccCCCcc-ccc
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLA----NHPYFG--IK-LMTADRKAG--QSIGS----VFPH---LISQDLPT-MVA 121 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~----~HP~~e--l~-~l~S~~~aG--k~l~~----~~p~---l~~~~~~~-~~~ 121 (306)
..++..||+|+| +|-.|..+.+++. .||.++ +. +....+-.| +.+.+ .|-. |.+.++|. +..
T Consensus 17 ~~~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 17 AERDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred hhcCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 334458999999 8999999999997 366554 22 122333444 23332 1211 22222221 111
Q ss_pred -cC-cccCCCCCEEEecCCccchHHHHHhc----CCCCeEEECCcccccCC
Q 021865 122 -VK-DADFSNVDAVFCCLPHGTTQEIIKGL----PKSLKIVDLSADFRLRD 166 (306)
Q Consensus 122 -~~-~~~~~~~DvVF~alp~~~s~~~~~~l----~~g~~VIDlSadfRl~~ 166 (306)
.| .+...++|++++.+||.....+.+.+ +.++..|.|+--|-..+
T Consensus 96 v~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~ 146 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGE 146 (372)
T ss_pred cchHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccC
Confidence 11 12336899999999999998777654 56889999988877653
No 248
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.58 E-value=0.3 Score=40.88 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=53.7
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEe---------------ccccCCcc--------cccccCCcccCCCccccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT---------------ADRKAGQS--------IGSVFPHLISQDLPTMVA 121 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~---------------S~~~aGk~--------l~~~~p~l~~~~~~~~~~ 121 (306)
||.|+|+ |-+|.++++.|.....-++..+- .....|++ +.+.+|++...... ..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~--~~ 77 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP--EG 77 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe--ee
Confidence 5899997 88999999999865444444442 12333432 22233433211000 01
Q ss_pred cC----cccCCCCCEEEecCCccchHHHH-Hhc-CCCCeEEECCcc
Q 021865 122 VK----DADFSNVDAVFCCLPHGTTQEII-KGL-PKSLKIVDLSAD 161 (306)
Q Consensus 122 ~~----~~~~~~~DvVF~alp~~~s~~~~-~~l-~~g~~VIDlSad 161 (306)
++ .+.+.+.|+||.|..+..+.... ... +.++.+||....
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11 12246899999999886665544 333 558888885553
No 249
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.57 E-value=0.21 Score=43.98 Aligned_cols=33 Identities=18% Similarity=0.009 Sum_probs=25.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++++|.|+||||++|++|++.|.+... ++..+.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~ 37 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHY 37 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEe
Confidence 356899999999999999999986543 444443
No 250
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.52 E-value=0.29 Score=47.27 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=43.4
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccCCcccccccCCcccCCCccccc-c-C---cccCCCCCEEEecCC
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVA-V-K---DADFSNVDAVFCCLP 138 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~-~-~---~~~~~~~DvVF~alp 138 (306)
||+|+||+|.+|..+.-.|...+.. |++++--+...|+.+.-.|- . .+ ..+.. . + .+++.++|+|+++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~--~-~~-~~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHI--P-TA-ASVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcC--C-cC-ceEEEecCCCchHHHcCCCCEEEEeCC
Confidence 6999999999999999988866654 57776433333433221110 0 00 01111 0 1 356789999998876
Q ss_pred c
Q 021865 139 H 139 (306)
Q Consensus 139 ~ 139 (306)
.
T Consensus 77 ~ 77 (312)
T TIGR01772 77 V 77 (312)
T ss_pred C
Confidence 4
No 251
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.51 E-value=0.15 Score=47.91 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=54.4
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC-Cc---ccccccCCccc-CC---------Ccccc-ccCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQ---SIGSVFPHLIS-QD---------LPTMV-AVKDAD 126 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a-Gk---~l~~~~p~l~~-~~---------~~~~~-~~~~~~ 126 (306)
.+.||+||| .|..|..+.+.|+.+ ..++..+-.+... .+ .+......+.. .. +.... ..+.+.
T Consensus 3 ~~~~V~vIG-~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T PLN02545 3 EIKKVGVVG-AGQMGSGIAQLAAAA-GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE 80 (295)
T ss_pred CcCEEEEEC-CCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH
Confidence 456899999 599999999999876 3566655322111 00 00000000000 00 00000 011234
Q ss_pred CCCCCEEEecCCccchH--HHHH----hcCCCCeEEECCcccccCC
Q 021865 127 FSNVDAVFCCLPHGTTQ--EIIK----GLPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 127 ~~~~DvVF~alp~~~s~--~~~~----~l~~g~~VIDlSadfRl~~ 166 (306)
++++|+||.|.+.+... .+.. .+..++.|+.+++.....+
T Consensus 81 ~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~ 126 (295)
T PLN02545 81 LRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR 126 (295)
T ss_pred hCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 57899999999965552 3332 2345677776666565443
No 252
>PRK06953 short chain dehydrogenase; Provisional
Probab=92.35 E-value=0.19 Score=44.45 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|.++.|.|+||.+|..+++.|+++ ..++..+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~-G~~v~~~~ 32 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD-GWRVIATA 32 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC-CCEEEEEE
Confidence 457999999999999999999865 45666654
No 253
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.34 E-value=0.74 Score=45.44 Aligned_cols=102 Identities=18% Similarity=0.391 Sum_probs=58.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCC------CceEEEEecccc-CCcc----ccccc--C-CcccCCCcc-cccc-C-cc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADRK-AGQS----IGSVF--P-HLISQDLPT-MVAV-K-DA 125 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP------~~el~~l~S~~~-aGk~----l~~~~--p-~l~~~~~~~-~~~~-~-~~ 125 (306)
.+||+|+| +|-.|..|...|.+.- +.++.....++. .++. +.+.+ + .|.+..++. +... | .+
T Consensus 11 ~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 47899999 6999999999998643 134444433322 1111 11111 1 121212221 1111 1 23
Q ss_pred cCCCCCEEEecCCccchHHHHHhcC------CCCeEEECCcccccC
Q 021865 126 DFSNVDAVFCCLPHGTTQEIIKGLP------KSLKIVDLSADFRLR 165 (306)
Q Consensus 126 ~~~~~DvVF~alp~~~s~~~~~~l~------~g~~VIDlSadfRl~ 165 (306)
.++++|+|++|.|+-.-.+++..+. .+..||.++.-+-.+
T Consensus 90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence 3578999999999988877776552 245788777766544
No 254
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=92.32 E-value=0.17 Score=53.08 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=27.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcC-CCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~H-P~~el~~l~ 95 (306)
++||.|.|||||+|+.|++.|.+. +..++..+.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 478999999999999999999864 567777664
No 255
>PRK05693 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.15 Score=46.66 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=26.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|+++.|.||||.+|.++++.|.+. ..+++.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~-G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAA-GYEVWATA 32 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC-CCEEEEEe
Confidence 467999999999999999999876 35665554
No 256
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.27 E-value=0.14 Score=45.84 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=25.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||++|..+++.|+++ ..+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g~~vi~~~ 37 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-GASVVVAD 37 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEe
Confidence 57999999999999999999875 35666554
No 257
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.22 E-value=1.3 Score=34.13 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=41.8
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+..+++|+|+ |-+|.-+.+.|.+.-..++ .+..+ |++|.|.+...
T Consensus 22 ~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v-~v~~r---------------------------------di~i~~~~~~~ 66 (86)
T cd05191 22 KGKTVVVLGA-GEVGKGIAKLLADEGGKKV-VLCDR---------------------------------DILVTATPAGV 66 (86)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEE-EEEcC---------------------------------CEEEEcCCCCC
Confidence 3468999998 9999999999886532222 22211 88888886544
Q ss_pred hH-HH-HHhcCCCCeEEECC
Q 021865 142 TQ-EI-IKGLPKSLKIVDLS 159 (306)
Q Consensus 142 s~-~~-~~~l~~g~~VIDlS 159 (306)
-- +. ...+..+..|||++
T Consensus 67 ~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred CchHHHHHhcCCCCEEEecC
Confidence 42 22 34456678888874
No 258
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.18 E-value=0.39 Score=41.14 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=50.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..+|.|+|.+.-+|..|..+|.+. ...+...-++. .+ + .+...++|+|++|++..
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~-gatV~~~~~~t---------------~~---l----~~~v~~ADIVvsAtg~~-- 82 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWKT---------------IQ---L----QSKVHDADVVVVGSPKP-- 82 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEeCCCC---------------cC---H----HHHHhhCCEEEEecCCC--
Confidence 368999999999999999999864 34444442211 01 1 12346899999999764
Q ss_pred HHHH-Hh-cCCCCeEEECCccc
Q 021865 143 QEII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 143 ~~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ .. +..|..|||..-+.
T Consensus 83 -~~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 83 -EKVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred -CccCHHHcCCCCEEEEcCCCc
Confidence 334 33 47899999877655
No 259
>PRK09291 short chain dehydrogenase; Provisional
Probab=92.17 E-value=0.12 Score=46.34 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=25.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.+|.|.||||.+|..+++.|++.. .+++.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 3579999999999999999998753 4565554
No 260
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.17 E-value=0.31 Score=49.58 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=83.1
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccC---CcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP---HLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p---~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+|+||| .|..|..|.+.|.++. +++.....+...-+.+.+.+. .+...+ ...++ ...++++|+||+|+|.+.
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G-~~V~v~drt~~~~~~l~~~~~~g~~~~~~~--s~~e~-v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHG-FTVSVYNRTPEKTDEFLAEHAKGKKIVGAY--SIEEF-VQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHhhccCCCCceecC--CHHHH-HhhcCCCCEEEEECCCcH
Confidence 489999 9999999999998764 355555332222222222110 011100 11111 112346899999999865
Q ss_pred h-HHHH----HhcCCCCeEEECCcccccCCccchhhhcCCCCCCcchhhhhhhcccccchhcccCCcEEecCCChHHHHh
Q 021865 142 T-QEII----KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQ 216 (306)
Q Consensus 142 s-~~~~----~~l~~g~~VIDlSadfRl~~~~~y~~wY~~~h~~Pel~~~avYGLpEl~r~~i~~a~lVAnPGCy~Ta~~ 216 (306)
. .++. +.+..|..|||.|..+--+.....++ .. +.-+ ...+--|-|=+|- .+.+..+ -+|+... ..
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~-~~gi-~fvdapVsGG~~g----A~~G~~i-m~GG~~~-a~ 146 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LK-AKGI-LFVGSGVSGGEEG----ARKGPSI-MPGGSAE-AW 146 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HH-hcCC-EEEcCCCCCCHHH----HhcCCcC-CCCCCHH-HH
Confidence 4 3333 44567899999987442111111111 00 0000 0111112232221 1222222 4777554 44
Q ss_pred hhhhHHHhccCCCCc--eEEEEeeeecCccCcccc
Q 021865 217 LPLVPLIQANLIQYR--NIIIDAKSGVSGAGRGAK 249 (306)
Q Consensus 217 LaL~PL~~~~li~~~--~iiV~a~sgvSGAGr~~~ 249 (306)
-.+.|+++. +..+ ..-...+-|-.|+|-..+
T Consensus 147 ~~~~p~L~~--ia~~~~~~~~~~~~G~~GsG~~vK 179 (467)
T TIGR00873 147 PLVAPIFQK--IAAKVDGEPCCTWIGPDGAGHYVK 179 (467)
T ss_pred HHHHHHHHH--HhhhcCCCCceEEECCcCHHHHHH
Confidence 567888875 2221 011246777778876553
No 261
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.15 E-value=0.29 Score=47.74 Aligned_cols=102 Identities=21% Similarity=0.356 Sum_probs=61.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccccc--C-CcccCCCcc-ccc-cC-cccCCCCCEEEec
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF--P-HLISQDLPT-MVA-VK-DADFSNVDAVFCC 136 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~--p-~l~~~~~~~-~~~-~~-~~~~~~~DvVF~a 136 (306)
|+||+|+| .|-.|..|...|.++- .++.....+...-+.+.+.+ + .|.+..++. +.. .| .+.++++|+++++
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 57999999 6889999999999654 33444443322222232211 1 122222221 111 11 2234679999999
Q ss_pred CCccchHHHHHhc----CCCCeEEECCcccccCC
Q 021865 137 LPHGTTQEIIKGL----PKSLKIVDLSADFRLRD 166 (306)
Q Consensus 137 lp~~~s~~~~~~l----~~g~~VIDlSadfRl~~ 166 (306)
.|+..-.++++.+ .++.++|-++--+-...
T Consensus 79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t 112 (329)
T COG0240 79 VPSQALREVLRQLKPLLLKDAIIVSATKGLEPET 112 (329)
T ss_pred CChHHHHHHHHHHhhhccCCCeEEEEeccccCCC
Confidence 9998888877654 56888888887666543
No 262
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.14 E-value=0.16 Score=46.77 Aligned_cols=32 Identities=9% Similarity=-0.075 Sum_probs=26.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.++.|.||||.+|..+++.|.++ ..+++.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTV 35 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEe
Confidence 467999999999999999999876 45666654
No 263
>PRK06392 homoserine dehydrogenase; Provisional
Probab=92.03 E-value=0.47 Score=46.08 Aligned_cols=95 Identities=16% Similarity=0.327 Sum_probs=51.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcC-------CCceEEEEecccc-----CCcccccccCCcccCCC--ccccccCcccC--
Q 021865 64 VRIGLLGASGYTGAEIVRLLANH-------PYFGIKLMTADRK-----AGQSIGSVFPHLISQDL--PTMVAVKDADF-- 127 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~H-------P~~el~~l~S~~~-----aGk~l~~~~p~l~~~~~--~~~~~~~~~~~-- 127 (306)
|||+|+| -|-||+.++++|.+. ..++++.++.++. .|-.+.+.........+ .....++.+++
T Consensus 1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 4899999 799999999999864 4566777754321 11111110000000000 00010111111
Q ss_pred CCCCEEEecCCccc----hHH-HHHhcCCCCeEEECC
Q 021865 128 SNVDAVFCCLPHGT----TQE-IIKGLPKSLKIVDLS 159 (306)
Q Consensus 128 ~~~DvVF~alp~~~----s~~-~~~~l~~g~~VIDlS 159 (306)
.++|+|+=|+|... ... +.+++++|+.||=.+
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaN 116 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTAN 116 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCC
Confidence 36899999997432 233 335668999998654
No 264
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.95 E-value=0.37 Score=46.42 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=42.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccc--cCCcccccccC-CcccCCCccccc-cCcccCCCCCEEEecCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--KAGQSIGSVFP-HLISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~--~aGk~l~~~~p-~l~~~~~~~~~~-~~~~~~~~~DvVF~alp 138 (306)
.+||+|||| |.+|..+..+|..+.-.+++++--+. ..|+.+...+- .+.... ..+.. -+.+++.++|+|+.+.+
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~-~~i~~~~d~~~l~~ADiVVitag 82 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSN-INILGTNNYEDIKDSDVVVITAG 82 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCC-eEEEeCCCHHHhCCCCEEEECCC
Confidence 469999997 99999999988876645666654322 22333211111 001101 11211 12246689999999983
No 265
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=91.93 E-value=0.14 Score=49.12 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=24.6
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|.|.||+|.+|+||+|.|+++.-.+++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d 30 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFD 30 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeC
Confidence 679999999999999999987445676664
No 266
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=91.92 E-value=0.48 Score=50.27 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=52.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCC-CceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
.||+||| .|.+|..+.+.|.+.- ..++... .++. .+ +.... .+ +.......+. .+.+.++|+||+|+|....
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~V~~~-d~~~-~~-~~~a~-~~-g~~~~~~~~~-~~~~~~aDvVilavp~~~~ 76 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAREVVAV-DRRA-KS-LELAV-SL-GVIDRGEEDL-AEAVSGADVIVLAVPVLAM 76 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCCEEEEE-ECCh-hH-HHHHH-HC-CCCCcccCCH-HHHhcCCCEEEECCCHHHH
Confidence 6899999 8999999999998643 2344443 3321 11 11000 00 1000001111 1224679999999998766
Q ss_pred HHHHHh----cCCCCeEEECCcc
Q 021865 143 QEIIKG----LPKSLKIVDLSAD 161 (306)
Q Consensus 143 ~~~~~~----l~~g~~VIDlSad 161 (306)
.++++. +..+..|+|+++-
T Consensus 77 ~~vl~~l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 77 EKVLADLKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCC
Confidence 665543 3457889999873
No 267
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=91.87 E-value=0.22 Score=46.60 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.8
Q ss_pred EEEEEccccHHHHHHHHHHhcCC-CceEEEEe
Q 021865 65 RIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~ 95 (306)
+|.|.||||++|..|++.|+++. ..++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 48899999999999999999774 35676665
No 268
>PLN02928 oxidoreductase family protein
Probab=91.82 E-value=0.57 Score=45.73 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=55.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccc--c-----CCcccCCCccccccCcccCCCCCEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--F-----PHLISQDLPTMVAVKDADFSNVDAVFCC 136 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~--~-----p~l~~~~~~~~~~~~~~~~~~~DvVF~a 136 (306)
.+|+|+| .|-+|+++.+.|..+- .++... .+. ..+..... + ..+..... ....+ ++.+.++|+|+++
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG-~~V~~~-dr~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L-~ell~~aDiVvl~ 233 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFG-VKLLAT-RRS-WTSEPEDGLLIPNGDVDDLVDEKG-GHEDI-YEFAGEADIVVLC 233 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCC-CEEEEE-CCC-CChhhhhhhccccccccccccccC-cccCH-HHHHhhCCEEEEC
Confidence 6899999 6999999999998664 466554 322 11100000 0 00000000 11122 2334789999999
Q ss_pred CCccch------HHHHHhcCCCCeEEECCcccccCC
Q 021865 137 LPHGTT------QEIIKGLPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 137 lp~~~s------~~~~~~l~~g~~VIDlSadfRl~~ 166 (306)
+|-... .+....+..|..+|+.+----.++
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde 269 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDY 269 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCH
Confidence 994433 334455677999999885444443
No 269
>PRK07454 short chain dehydrogenase; Provisional
Probab=91.82 E-value=0.23 Score=44.24 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=26.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+|.++.|.|+||.+|..|++.|+++-. ++..+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~ 37 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVA 37 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 457899999999999999999987643 555554
No 270
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.82 E-value=0.35 Score=43.36 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=53.1
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe---------------ccccCCcc--------cccccCCcccCCCc-
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT---------------ADRKAGQS--------IGSVFPHLISQDLP- 117 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~---------------S~~~aGk~--------l~~~~p~l~~~~~~- 117 (306)
+..||.|+|+.| +|.|+++.|...---+++.+- .....|++ +.+..|........
T Consensus 20 ~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 346899999888 999999999864444444432 12233431 33445544311000
Q ss_pred cccccCcccCCCCCEEEecCCccchHHHHHhc--CCCCeEEEC
Q 021865 118 TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVDL 158 (306)
Q Consensus 118 ~~~~~~~~~~~~~DvVF~alp~~~s~~~~~~l--~~g~~VIDl 158 (306)
.+.+..++.+.+.|+|++|+++..+...+..+ ..++.+|..
T Consensus 99 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 99 DISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred CccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 01111112246889999998775555444333 456666653
No 271
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=91.80 E-value=0.2 Score=46.10 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=23.5
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
||.|+||||++|..|++.|.++.. ++..+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-EVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-eEEEE
Confidence 589999999999999999987643 45444
No 272
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.68 E-value=0.35 Score=46.84 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=25.4
Q ss_pred EEEEEccccHHHHHHHHHHhcCCC------ceEEEEec
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPY------FGIKLMTA 96 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~------~el~~l~S 96 (306)
||+|+||+|.+|..+...|....- .+++++--
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 689999999999999998886333 36777743
No 273
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.59 E-value=0.42 Score=44.28 Aligned_cols=93 Identities=15% Similarity=0.266 Sum_probs=53.0
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEE---------------eccccCCcc--------cccccCCcccCCCc-cc-
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM---------------TADRKAGQS--------IGSVFPHLISQDLP-TM- 119 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l---------------~S~~~aGk~--------l~~~~p~l~~~~~~-~~- 119 (306)
||.|+| .|-+|.|+++.|.....-+++.+ ......|++ +.+..|.+...... .+
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589999 56789999999975333333332 122334432 22334433211000 01
Q ss_pred --cccCcccCCCCCEEEecCCccchHHHHHhc--CCCCeEEEC
Q 021865 120 --VAVKDADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVDL 158 (306)
Q Consensus 120 --~~~~~~~~~~~DvVF~alp~~~s~~~~~~l--~~g~~VIDl 158 (306)
...+++-+++.|+|+.|+.+-.++.++..+ ..++.+||-
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~ 122 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIES 122 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 111122247899999999998887777543 567888874
No 274
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.53 E-value=0.54 Score=42.37 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=48.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|||+ |-+|...++.|.+.. .+++.+. + ...+.+.+..+.-. ... ....+++.++.++|+||.|++.....
T Consensus 11 k~vLVIGg-G~va~~ka~~Ll~~g-a~V~VIs-~-~~~~~l~~l~~~~~-i~~-~~~~~~~~~l~~adlViaaT~d~elN 84 (202)
T PRK06718 11 KRVVIVGG-GKVAGRRAITLLKYG-AHIVVIS-P-ELTENLVKLVEEGK-IRW-KQKEFEPSDIVDAFLVIAATNDPRVN 84 (202)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CeEEEEc-C-CCCHHHHHHHhCCC-EEE-EecCCChhhcCCceEEEEcCCCHHHH
Confidence 58999996 999999999888754 5666553 3 22222222211100 000 01122344567899999999877664
Q ss_pred HHH-HhcCCCC
Q 021865 144 EII-KGLPKSL 153 (306)
Q Consensus 144 ~~~-~~l~~g~ 153 (306)
+.+ ....++.
T Consensus 85 ~~i~~~a~~~~ 95 (202)
T PRK06718 85 EQVKEDLPENA 95 (202)
T ss_pred HHHHHHHHhCC
Confidence 443 3334443
No 275
>PLN03139 formate dehydrogenase; Provisional
Probab=91.50 E-value=0.58 Score=46.57 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=54.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s- 142 (306)
.+|+||| .|.+|+.+++.|... ..++... .+......... .. + .....++ ++.+.++|+|++++|....
T Consensus 200 ktVGIVG-~G~IG~~vA~~L~af-G~~V~~~-d~~~~~~~~~~---~~-g--~~~~~~l-~ell~~sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVG-AGRIGRLLLQRLKPF-NCNLLYH-DRLKMDPELEK---ET-G--AKFEEDL-DAMLPKCDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEe-ecHHHHHHHHHHHHC-CCEEEEE-CCCCcchhhHh---hc-C--ceecCCH-HHHHhhCCEEEEeCCCCHHH
Confidence 6899999 799999999999864 5566543 32211111100 00 0 0001112 2234679999999994433
Q ss_pred HHHH-----HhcCCCCeEEECCcccccCC
Q 021865 143 QEII-----KGLPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 143 ~~~~-----~~l~~g~~VIDlSadfRl~~ 166 (306)
..+. ..+..|..+|+.+--=-.+.
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe 298 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDT 298 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhH
Confidence 3333 44567899998775444433
No 276
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.48 E-value=0.3 Score=46.49 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=41.5
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccCCcccc----cccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIG----SVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~----~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
||+|+|+ |.+|..+...|....-. ++.++-.....-+.+. +..... ... ..+...+.+++.++|+|+.|++.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~-~~~-~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL-PSP-VKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc-CCC-eEEEcCCHHHhCCCCEEEEccCC
Confidence 8999996 99999999999876654 6766643222211111 111000 000 01111223446799999999975
No 277
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.43 E-value=0.3 Score=38.96 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=50.5
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccc-cCCcccCCCccccccCcccCCCCCEEEecCCccchH-
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV-FPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ- 143 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~-~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~- 143 (306)
|.|+|. |-.|.++++.|.+ ...+++.+..+...-+.+.+. ++-+. .|..+.+.+....++++|.++++++.+...
T Consensus 1 vvI~G~-g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~ 77 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEGVEVIY-GDATDPEVLERAGIEKADAVVILTDDDEENL 77 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESEEEEESSSHHHHH
T ss_pred eEEEcC-CHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhccccccc-ccchhhhHHhhcCccccCEEEEccCCHHHHH
Confidence 568886 7899999999998 456788887554332222211 11111 232222223233456899999999877653
Q ss_pred HHH---HhcCCCCeEE
Q 021865 144 EII---KGLPKSLKIV 156 (306)
Q Consensus 144 ~~~---~~l~~g~~VI 156 (306)
..+ +.+....+||
T Consensus 78 ~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 78 LIALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHCCCCeEE
Confidence 222 3344456777
No 278
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.39 E-value=0.56 Score=44.55 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=24.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+++|+||| .|+.|..+...|+++ ..+++.+.
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~-G~~V~v~d 32 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARA-GHEVRLWD 32 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHC-CCeeEEEe
Confidence 35899999 999999999999876 34566554
No 279
>PRK07578 short chain dehydrogenase; Provisional
Probab=91.39 E-value=0.42 Score=41.53 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=25.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|++.|.||+|.+|.++.+.|.++ .++..+.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~ 30 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAG 30 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence 37999999999999999999987 6666554
No 280
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.27 E-value=0.4 Score=42.48 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=26.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
.+|.|.||+|.+|..+++.|.++ ..++..+..
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~-G~~V~~~~r 37 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKE-GAQVCINSR 37 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHC-CCEEEEEeC
Confidence 58999999999999999999875 346666543
No 281
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=91.26 E-value=0.53 Score=46.52 Aligned_cols=35 Identities=26% Similarity=0.531 Sum_probs=28.7
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCC-CceEEEEe
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP-~~el~~l~ 95 (306)
.++.++.|+|++||.|+.|++.|.+.- ..++..+-
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D 37 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVD 37 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEec
Confidence 456789999999999999999999654 66666653
No 282
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=91.17 E-value=0.34 Score=42.50 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=45.4
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+..+|.|+|.++.+|.-|..+|.++ +..+...-++. .+ + .+...++|+|+.|.+.
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~-~atVt~~h~~T---------------~~---l----~~~~~~ADIVVsa~G~-- 89 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNK-GATVTICHSKT---------------KN---L----QEITRRADIVVSAVGK-- 89 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHT-T-EEEEE-TTS---------------SS---H----HHHHTTSSEEEE-SSS--
T ss_pred CCCEEEEECCcCCCChHHHHHHHhC-CCeEEeccCCC---------------Cc---c----cceeeeccEEeeeecc--
Confidence 3468999999999999999999876 44443332211 01 1 1122579999999964
Q ss_pred hHHHHHh-cCCCCeEEECCcccc
Q 021865 142 TQEIIKG-LPKSLKIVDLSADFR 163 (306)
Q Consensus 142 s~~~~~~-l~~g~~VIDlSadfR 163 (306)
...+-.. +..|..|||.+-++-
T Consensus 90 ~~~i~~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 90 PNLIKADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp TT-B-GGGS-TTEEEEE--CEEE
T ss_pred ccccccccccCCcEEEecCCccc
Confidence 2223333 477999999887665
No 283
>PRK07023 short chain dehydrogenase; Provisional
Probab=91.16 E-value=0.33 Score=43.43 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=26.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|+++.|.||||.+|.++.+.|+++ ..++..+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~-G~~v~~~~ 32 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP-GIAVLGVA 32 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC-CCEEEEEe
Confidence 568999999999999999999976 45666554
No 284
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=91.14 E-value=0.32 Score=50.91 Aligned_cols=27 Identities=15% Similarity=0.417 Sum_probs=23.1
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcC
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANH 86 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~H 86 (306)
.+++|||.|.||||++|+.|++.|...
T Consensus 377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~ 403 (668)
T PLN02260 377 GKPSLKFLIYGRTGWIGGLLGKLCEKQ 403 (668)
T ss_pred CCCCceEEEECCCchHHHHHHHHHHhC
Confidence 344579999999999999999999854
No 285
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.07 E-value=0.5 Score=48.72 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=55.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccC------Cccc---------CCCc-ccc----cc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP------HLIS---------QDLP-TMV----AV 122 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p------~l~~---------~~~~-~~~----~~ 122 (306)
.-||.|+|+ |-+|...++.+...- .++..+..+... ....+.++ .... ..+. +.. ..
T Consensus 164 ~akVlViGa-G~iGl~Aa~~ak~lG-A~V~v~d~~~~r-le~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 164 PAKVLVIGA-GVAGLAAIGAANSLG-AIVRAFDTRPEV-KEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 368999995 999999999888653 335454432211 11111010 0000 0000 000 00
Q ss_pred CcccCCCCCEEEecC-----Cc--cchHHHHHhcCCCCeEEECCcc
Q 021865 123 KDADFSNVDAVFCCL-----PH--GTTQEIIKGLPKSLKIVDLSAD 161 (306)
Q Consensus 123 ~~~~~~~~DvVF~al-----p~--~~s~~~~~~l~~g~~VIDlSad 161 (306)
-.+...++|+||.|. +. -++.+.++.+..|.+|||++.|
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 022346799999998 43 2667778888999999999876
No 286
>PRK08291 ectoine utilization protein EutC; Validated
Probab=91.02 E-value=0.3 Score=47.12 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=50.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
..+++|+|+ |..|...+..|.....++-+.+.+|+.. .+.+.+.+....+.......++ ++.+.++|+|+.|+|...
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~-~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDV-HEAVAGADIIVTTTPSEE 209 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCH-HHHHccCCEEEEeeCCCC
Confidence 368999996 5557777777764334554455454322 2222221111001111001111 233467999999998753
Q ss_pred hHHHHH--hcCCCCeEEECCccc
Q 021865 142 TQEIIK--GLPKSLKIVDLSADF 162 (306)
Q Consensus 142 s~~~~~--~l~~g~~VIDlSadf 162 (306)
.++. .+..|..|+...+|.
T Consensus 210 --p~i~~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 --PILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred --cEecHHHcCCCceEEeeCCCC
Confidence 3332 256788887766654
No 287
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.01 E-value=0.39 Score=42.31 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
++|.|.||||++|..|++.|.++.. ++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~ 36 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGA-KVVIYD 36 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 6899999999999999999997743 454443
No 288
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=90.98 E-value=0.31 Score=46.21 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=26.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++|.|.||||++|++|++.|.+. ..++..+.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~ 37 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSK-GYEVHGII 37 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-CCEEEEEe
Confidence 468999999999999999999875 45666664
No 289
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.90 E-value=0.65 Score=43.58 Aligned_cols=102 Identities=14% Similarity=0.239 Sum_probs=53.8
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc-CCcccccccCCc----ccCCCc---------cccc-cCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHL----ISQDLP---------TMVA-VKDAD 126 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~-aGk~l~~~~p~l----~~~~~~---------~~~~-~~~~~ 126 (306)
+..||+||| .|..|..+...|+.. ..++.++..+.. ..+....+...+ ....++ .+.. .+.++
T Consensus 3 ~~~kI~vIG-aG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 80 (292)
T PRK07530 3 AIKKVGVIG-AGQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED 80 (292)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH
Confidence 346899999 599999999999864 345655532211 111000000000 000000 0100 11233
Q ss_pred CCCCCEEEecCCccch--HHHH----HhcCCCCeEEECCcccccC
Q 021865 127 FSNVDAVFCCLPHGTT--QEII----KGLPKSLKIVDLSADFRLR 165 (306)
Q Consensus 127 ~~~~DvVF~alp~~~s--~~~~----~~l~~g~~VIDlSadfRl~ 165 (306)
++++|+||.|+|.... ..+. +.+..++.|+.+++.....
T Consensus 81 ~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s 125 (292)
T PRK07530 81 LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT 125 (292)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 5789999999997643 2233 3345577787677766643
No 290
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.85 E-value=0.47 Score=45.68 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=43.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEecccc--CCccc--ccccCCcccCCCccccccCcccCCCCCEEEecCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK--AGQSI--GSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~--aGk~l--~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
.||+|+|| |.+|..+.-.|...+.+ ++.++-.... .|..+ .+..|.+.. . .+..-+.+++.++|+|+++.+
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~--~-~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSP--T-KIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCC--e-EEEeCCHHHhCCCCEEEEecC
Confidence 59999998 99999999999888776 5666643222 12221 121111110 0 111112345689999998876
Q ss_pred c
Q 021865 139 H 139 (306)
Q Consensus 139 ~ 139 (306)
.
T Consensus 83 ~ 83 (315)
T PRK00066 83 A 83 (315)
T ss_pred C
Confidence 4
No 291
>PLN02240 UDP-glucose 4-epimerase
Probab=90.85 E-value=0.36 Score=45.64 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=26.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+++|.|.||||++|..|++.|.+.. .+++.+.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVID 36 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 3689999999999999999998654 4666664
No 292
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.80 E-value=0.51 Score=42.35 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=52.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEec---------------c--ccCCcc--------cccccCCcccCCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---------------D--RKAGQS--------IGSVFPHLISQDLP 117 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S---------------~--~~aGk~--------l~~~~p~l~~~~~~ 117 (306)
..||.|+|+.| +|.|+++.|...---+++.+-. . ...|++ +.+..|.+......
T Consensus 19 ~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 47899999988 9999999997533223333321 1 222321 23344544321100
Q ss_pred -cc---cccCcccCCCCCEEEecCCccchHHHHHh-c-CCCCeEEECC
Q 021865 118 -TM---VAVKDADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (306)
Q Consensus 118 -~~---~~~~~~~~~~~DvVF~alp~~~s~~~~~~-l-~~g~~VIDlS 159 (306)
.. .+..++.+.++|+|+.|..+..+...+.. . +.++.+|..+
T Consensus 98 ~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 98 EDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred cccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 00 00001224678999999876555444433 3 5577787643
No 293
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.79 E-value=0.72 Score=43.03 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=50.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCccc--CCCc-ccccc-Cccc-CCCCCEEEecCC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS--QDLP-TMVAV-KDAD-FSNVDAVFCCLP 138 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~--~~~~-~~~~~-~~~~-~~~~DvVF~alp 138 (306)
|||+|+| .|.+|..+...|.+. ..++..+.. ...-+.+.+..-.+.. .+.. ..... +.++ ..++|++|+|++
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~~-g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLEA-GRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHC-CCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 5899998 799999999999865 335555543 1100111110000000 0000 00001 1122 267999999999
Q ss_pred ccchHHHHHhc----CCCCeEEECCcc
Q 021865 139 HGTTQEIIKGL----PKSLKIVDLSAD 161 (306)
Q Consensus 139 ~~~s~~~~~~l----~~g~~VIDlSad 161 (306)
.....++.+.+ ..+..||.+..-
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~ii~~~nG 104 (305)
T PRK12921 78 AYQLDAAIPDLKPLVGEDTVIIPLQNG 104 (305)
T ss_pred ccCHHHHHHHHHhhcCCCCEEEEeeCC
Confidence 77665555433 446777776553
No 294
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.76 E-value=0.16 Score=45.25 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|.+|++.|+++- .++..+.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~ 36 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREG-ARVVVAD 36 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC-CeEEEec
Confidence 579999999999999999998763 4665554
No 295
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.71 E-value=0.4 Score=45.83 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=50.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|+|||.||.+|.=+..+|++. ...++..-++. .+ . .+...++|+|+.|++....
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~-gatVtv~~s~t---------------~~---l----~~~~~~ADIVI~avg~~~~- 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK-NATVTLTHSRT---------------RN---L----AEVARKADILVVAIGRGHF- 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC-CCEEEEECCCC---------------CC---H----HHHHhhCCEEEEecCcccc-
Confidence 68999999999999999999864 34444431110 01 1 1223679999999986533
Q ss_pred HHHHh-cCCCCeEEECCcccc
Q 021865 144 EIIKG-LPKSLKIVDLSADFR 163 (306)
Q Consensus 144 ~~~~~-l~~g~~VIDlSadfR 163 (306)
+-.. +..|..|||.+-.+-
T Consensus 215 -v~~~~ik~GavVIDvgin~~ 234 (284)
T PRK14179 215 -VTKEFVKEGAVVIDVGMNRD 234 (284)
T ss_pred -CCHHHccCCcEEEEecceec
Confidence 1122 577999999987653
No 296
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.68 E-value=0.68 Score=47.21 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=52.1
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccc-------cCCcccCC------CccccccCcccCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV-------FPHLISQD------LPTMVAVKDADFS 128 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~-------~p~l~~~~------~~~~~~~~~~~~~ 128 (306)
+.+||+||| +|..|..+...|+++ .+++.+.-.+...-+.+.+. ...+.... +....++ .+.++
T Consensus 3 ~i~kIavIG-~G~MG~~iA~~la~~-G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~-~ea~~ 79 (495)
T PRK07531 3 MIMKAACIG-GGVIGGGWAARFLLA-GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASL-AEAVA 79 (495)
T ss_pred CcCEEEEEC-cCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCH-HHHhc
Confidence 346899998 899999999999876 34565553221111111110 00010000 1001111 23357
Q ss_pred CCCEEEecCCccch--HHHHHh----cCCCCeEEECCcccc
Q 021865 129 NVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFR 163 (306)
Q Consensus 129 ~~DvVF~alp~~~s--~~~~~~----l~~g~~VIDlSadfR 163 (306)
++|+||.|+|.... ..+... +..++.|.-.++...
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~ 120 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFL 120 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 89999999998864 223222 244554444555544
No 297
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.63 E-value=0.34 Score=48.21 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=22.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYF 89 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~ 89 (306)
..||+|+||+|.+|..++-.|....-+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~ 70 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVF 70 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccc
Confidence 489999999999999999988754433
No 298
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.62 E-value=0.57 Score=42.70 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=54.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEE---------------eccccCCcc--------cccccCCcccCCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLM---------------TADRKAGQS--------IGSVFPHLISQDLPTM 119 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l---------------~S~~~aGk~--------l~~~~p~l~~~~~~~~ 119 (306)
..||.|+| .|-+|.++++.|...---++..+ ......|+. +.+..|+.......
T Consensus 21 ~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~-- 97 (228)
T cd00757 21 NARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN-- 97 (228)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec--
Confidence 46899999 56789999999985443344333 112234432 22344443211110
Q ss_pred cccC----cccCCCCCEEEecCCccchHHHHHh-c-CCCCeEEECC
Q 021865 120 VAVK----DADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (306)
Q Consensus 120 ~~~~----~~~~~~~DvVF~alp~~~s~~~~~~-l-~~g~~VIDlS 159 (306)
..++ .+.+.++|+||.|+.+-.+..++.. . ..++.+|+.+
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 0111 1224679999999998777665543 3 5688888853
No 299
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=90.57 E-value=1.1 Score=42.91 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=58.1
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
++..||.|.|.||-.|+.+++.|.++..- .++.+..+..+..+.- + .-++.+.++ ++.. +.|+++++.|..
T Consensus 6 ~~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~G----~--~~y~sv~dl-p~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVLG----L--PVFNTVAEA-VEAT-GANASVIYVPPP 76 (291)
T ss_pred cCCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEeC----e--eccCCHHHH-hhcc-CCCEEEEEcCHH
Confidence 34578999999999999999999887654 4444433311111110 0 111222222 1111 289999999998
Q ss_pred chHHHHHhc-CCCCe-EEECCcccccC
Q 021865 141 TTQEIIKGL-PKSLK-IVDLSADFRLR 165 (306)
Q Consensus 141 ~s~~~~~~l-~~g~~-VIDlSadfRl~ 165 (306)
...+.+..+ ++|++ +|=+|+-|.++
T Consensus 77 ~v~~~l~e~~~~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHH
Confidence 888877765 66643 23366777644
No 300
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.53 E-value=0.46 Score=45.75 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=42.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccc--cCCccc--ccccCCcccCCCccccc-cCcccCCCCCEEEecC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSI--GSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCL 137 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~--~aGk~l--~~~~p~l~~~~~~~~~~-~~~~~~~~~DvVF~al 137 (306)
.||+|||| |.+|..+.-.|...+-. |++++-..+ ..|..+ .+..|.+.. ..+.. -+.+++.++|+|+.+.
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~---~~v~~~~dy~~~~~adivvita 79 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKN---PKIEADKDYSVTANSKVVIVTA 79 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCC---CEEEECCCHHHhCCCCEEEECC
Confidence 59999996 99999999988866655 576664322 223322 122211110 11211 2234578999999976
Q ss_pred Cc
Q 021865 138 PH 139 (306)
Q Consensus 138 p~ 139 (306)
+.
T Consensus 80 G~ 81 (312)
T cd05293 80 GA 81 (312)
T ss_pred CC
Confidence 53
No 301
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=90.41 E-value=0.71 Score=45.15 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=50.1
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCC---------CceEEEEeccccC-Cc--ccccccCCcccCCCccccccCcccCCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHP---------YFGIKLMTADRKA-GQ--SIGSVFPHLISQDLPTMVAVKDADFSN 129 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP---------~~el~~l~S~~~a-Gk--~l~~~~p~l~~~~~~~~~~~~~~~~~~ 129 (306)
+++||+|+| .|-||+.++++|.++. +++++.++.++.. -+ .+... ..+. .+...-...+...-.+
T Consensus 2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 78 (333)
T COG0460 2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA-EVWT-TDGALSLGDEVLLDED 78 (333)
T ss_pred ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch-hhhe-ecccccccHhhhcccc
Confidence 568999999 8999999999998642 3455555533211 11 11110 0111 0110000000001146
Q ss_pred CCEEEecCCcc--chH--H-HHHhcCCCCeEEE
Q 021865 130 VDAVFCCLPHG--TTQ--E-IIKGLPKSLKIVD 157 (306)
Q Consensus 130 ~DvVF~alp~~--~s~--~-~~~~l~~g~~VID 157 (306)
.|+|+-+.+.+ .+. + +.+++++|..||-
T Consensus 79 ~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVT 111 (333)
T COG0460 79 IDVVVELVGGDVEPAEPADLYLKALENGKHVVT 111 (333)
T ss_pred CCEEEecCcccCCchhhHHHHHHHHHcCCeEEC
Confidence 78888887762 223 3 3456788999994
No 302
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=90.39 E-value=0.24 Score=45.69 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.5
Q ss_pred EEEccccHHHHHHHHHHhcCC
Q 021865 67 GLLGASGYTGAEIVRLLANHP 87 (306)
Q Consensus 67 aIiGATGyvG~ELlrlL~~HP 87 (306)
.|.|||||+|..|++.|.+..
T Consensus 1 lItGa~GfiG~~l~~~L~~~g 21 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALG 21 (306)
T ss_pred CcccCCCcccHHHHHHHHhCC
Confidence 389999999999999998654
No 303
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=90.29 E-value=0.65 Score=44.84 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=86.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc-ch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-TT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~-~s 142 (306)
+||+||| .|..|+.+++.|.++- +++.....+.. +...... .. +.. .... .+.+.++|+||+|+|.. ..
T Consensus 4 kkIgiIG-~G~mG~AiA~~L~~sG-~~Viv~~~~~~--~~~~~a~-~~-Gv~---~~s~-~ea~~~ADiVvLaVpp~~~~ 73 (314)
T TIGR00465 4 KTVAIIG-YGSQGHAQALNLRDSG-LNVIVGLRKGG--ASWKKAT-ED-GFK---VGTV-EEAIPQADLIMNLLPDEVQH 73 (314)
T ss_pred CEEEEEe-EcHHHHHHHHHHHHCC-CeEEEEECcCh--hhHHHHH-HC-CCE---ECCH-HHHHhcCCEEEEeCCcHhHH
Confidence 6799999 8999999999998653 34433322211 2221110 00 111 1111 22346799999999977 33
Q ss_pred HHHH----HhcCCCCeEEECCcccccCCccchhhhcCC----CCCCcchhhhhhhcccccchhc-c--cCC-cEE-ecCC
Q 021865 143 QEII----KGLPKSLKIVDLSADFRLRDVSEYEEWYGQ----PHIAPDLQKEAVYGLTEISRED-I--KNA-RLV-ANPG 209 (306)
Q Consensus 143 ~~~~----~~l~~g~~VIDlSadfRl~~~~~y~~wY~~----~h~~Pel~~~avYGLpEl~r~~-i--~~a-~lV-AnPG 209 (306)
..+. +.+..+ .+|..++-|.++.- +.|-+. -.+.|......| |+. . ++. -++ .+++
T Consensus 74 ~~v~~ei~~~l~~g-~iVs~aaG~~i~~~---~~~~~~~~~VvrvmPn~p~~~v-------r~~~~~G~G~~~l~a~~~~ 142 (314)
T TIGR00465 74 EVYEAEIQPLLKEG-KTLGFSHGFNIHFV---QIVPPKDVDVVMVAPKGPGTLV-------REEYKEGFGVPTLIAVEQD 142 (314)
T ss_pred HHHHHHHHhhCCCC-cEEEEeCCccHhhc---cccCCCCCcEEEECCCCCcHHH-------HHHhhcCCCeeEEEEecCC
Confidence 3333 334445 48999988887653 223221 112343222211 111 1 121 344 6777
Q ss_pred ChHHHHhhhhhHHHhccCC-----------CCceEEEEeeeecCccCccccc
Q 021865 210 CYPTSIQLPLVPLIQANLI-----------QYRNIIIDAKSGVSGAGRGAKE 250 (306)
Q Consensus 210 Cy~Ta~~LaL~PL~~~~li-----------~~~~iiV~a~sgvSGAGr~~~~ 250 (306)
+...+..+++.=+-.-|.. ..+.=..+..++.||.|-+-..
T Consensus 143 ~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~ 194 (314)
T TIGR00465 143 PTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIK 194 (314)
T ss_pred CCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHH
Confidence 7666655555444333322 1111135778888998876554
No 304
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.26 E-value=1.1 Score=44.62 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=49.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc-
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~- 141 (306)
..+|+||| .|-+|+.+.+.|... .+++.... +..... . . ... ...+ ++.+.++|+|++++|-..
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~a~-G~~V~~~d-p~~~~~--~---~---~~~---~~~L-~ell~~sDiI~lh~PLt~~ 180 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLEAL-GIKTLLCD-PPRADR--G---D---EGD---FRSL-DELVQEADILTFHTPLFKD 180 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEC-Cccccc--c---c---ccc---cCCH-HHHHhhCCEEEEeCCCCCC
Confidence 36899999 699999999999865 34554442 211100 0 0 001 1112 223468999999998433
Q ss_pred ----h-----HHHHHhcCCCCeEEECCc
Q 021865 142 ----T-----QEIIKGLPKSLKIVDLSA 160 (306)
Q Consensus 142 ----s-----~~~~~~l~~g~~VIDlSa 160 (306)
+ .+....+..|..+|+.|-
T Consensus 181 g~~~T~~li~~~~l~~mk~gailIN~aR 208 (378)
T PRK15438 181 GPYKTLHLADEKLIRSLKPGAILINACR 208 (378)
T ss_pred cccccccccCHHHHhcCCCCcEEEECCC
Confidence 2 445556667777776654
No 305
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.12 E-value=0.17 Score=45.04 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=21.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|||+|+| .||+|.-+.-.|+++- +++..+-
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G-~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKG-HQVIGVD 30 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTT-SEEEEE-
T ss_pred CEEEEEC-CCcchHHHHHHHHhCC-CEEEEEe
Confidence 7999998 9999999999998653 4455543
No 306
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=90.04 E-value=1 Score=44.79 Aligned_cols=88 Identities=16% Similarity=0.265 Sum_probs=51.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc-
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~- 141 (306)
..+|+||| .|-+|+.+.+.|... .+++...- +..... . .... ...+ ++.++++|+|.+++|-..
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~-G~~V~~~D-p~~~~~--~------~~~~---~~~l-~ell~~aDiV~lh~Plt~~ 180 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGL-GWKVLVCD-PPRQEA--E------GDGD---FVSL-ERILEECDVISLHTPLTKE 180 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEC-Cccccc--c------cCcc---ccCH-HHHHhhCCEEEEeCcCCCC
Confidence 36899999 699999999999865 34554442 211100 0 0001 1112 223468999999999543
Q ss_pred ----h-----HHHHHhcCCCCeEEECCcccccC
Q 021865 142 ----T-----QEIIKGLPKSLKIVDLSADFRLR 165 (306)
Q Consensus 142 ----s-----~~~~~~l~~g~~VIDlSadfRl~ 165 (306)
+ .+....+..|..+|..|--=-.+
T Consensus 181 g~~~T~~li~~~~l~~mk~gailIN~aRG~vVd 213 (381)
T PRK00257 181 GEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213 (381)
T ss_pred ccccccccCCHHHHhcCCCCeEEEECCCCcccC
Confidence 2 34445566777777766433333
No 307
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.03 E-value=0.89 Score=43.74 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=53.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc-h
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~-s 142 (306)
.+|+|+| .|-+|+++.++|..+ ..++... ++.. .... . .. ...+ ++.+..+|+|.+++|-.. +
T Consensus 148 ktvgIiG-~G~IG~~va~~l~~f-g~~V~~~-~~~~-~~~~-------~-~~---~~~l-~ell~~sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFG-KGCLGTEVGRLAQAL-GMKVLYA-EHKG-ASVC-------R-EG---YTPF-EEVLKQADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEEC-CCHHHHHHHHHHhcC-CCEEEEE-CCCc-cccc-------c-cc---cCCH-HHHHHhCCEEEEcCCCChHH
Confidence 6899999 799999999999765 3455443 3221 1100 0 00 1112 233478999999999433 3
Q ss_pred -----HHHHHhcCCCCeEEECCcccccCC
Q 021865 143 -----QEIIKGLPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 143 -----~~~~~~l~~g~~VIDlSadfRl~~ 166 (306)
.+....+..|..+|..+----.+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde 240 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDE 240 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCH
Confidence 344455677899997765444443
No 308
>PRK08374 homoserine dehydrogenase; Provisional
Probab=90.03 E-value=0.65 Score=45.14 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=53.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCC---------CceEEEEeccc-----cCCcccccccCCcc--c--CCCc---cccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHP---------YFGIKLMTADR-----KAGQSIGSVFPHLI--S--QDLP---TMVA 121 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP---------~~el~~l~S~~-----~aGk~l~~~~p~l~--~--~~~~---~~~~ 121 (306)
+++|+|+| -|-||+.++++|.++- +++++.++.++ ..|-.+.+...... + ..++ ....
T Consensus 2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 58999999 8999999999998631 25566665322 11111111000000 0 0000 0000
Q ss_pred cCccc-C--CCCCEEEecCCccchHHHHHh-cCCCCeEEECC
Q 021865 122 VKDAD-F--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLS 159 (306)
Q Consensus 122 ~~~~~-~--~~~DvVF~alp~~~s~~~~~~-l~~g~~VIDlS 159 (306)
++.++ + .++|+|+-|++...+.++..+ +.+|+.||=.+
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtan 122 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSN 122 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECC
Confidence 11111 1 368999999988777776654 58899888433
No 309
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.98 E-value=0.83 Score=44.19 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=52.6
Q ss_pred cEEEEEccccHHHHHHHHHHh-cCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~-~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
.+|+||| .|-+|+++.++|. .+ ..++.+. .+... ....+ .+ +.. ...+ ++.++++|+|.+++|-...
T Consensus 146 ktvGIiG-~G~IG~~va~~l~~~f-gm~V~~~-~~~~~-~~~~~---~~-~~~---~~~l-~ell~~sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVG-MGRIGMALAQRAHFGF-NMPILYN-ARRHH-KEAEE---RF-NAR---YCDL-DTLLQESDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhcC-CCEEEEE-CCCCc-hhhHH---hc-CcE---ecCH-HHHHHhCCEEEEeCCCChH
Confidence 6899999 6999999999997 55 4455443 22211 11000 00 000 1112 2334789999999994433
Q ss_pred ------HHHHHhcCCCCeEEECCcccccC
Q 021865 143 ------QEIIKGLPKSLKIVDLSADFRLR 165 (306)
Q Consensus 143 ------~~~~~~l~~g~~VIDlSadfRl~ 165 (306)
.+....+..|..+|..+----.+
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVd 242 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVD 242 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccC
Confidence 33445567788888766443333
No 310
>PRK06813 homoserine dehydrogenase; Validated
Probab=89.83 E-value=0.9 Score=44.59 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=50.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcC---------CCceEEEEeccccC-----CcccccccCCcc-cCCCccccccCccc-
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRKA-----GQSIGSVFPHLI-SQDLPTMVAVKDAD- 126 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~H---------P~~el~~l~S~~~a-----Gk~l~~~~p~l~-~~~~~~~~~~~~~~- 126 (306)
+++|+|+| .|-||+.++++|.++ -+++++.+..++.. |-.+.+....-. ..+...+...+.++
T Consensus 2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 58999999 899999999999743 23455555432211 111111000000 00000000001111
Q ss_pred C---CCCCEEEecCCc-----cchHHHH-HhcCCCCeEEE
Q 021865 127 F---SNVDAVFCCLPH-----GTTQEII-KGLPKSLKIVD 157 (306)
Q Consensus 127 ~---~~~DvVF~alp~-----~~s~~~~-~~l~~g~~VID 157 (306)
+ .+.|||+-|+|+ +.+..++ .+|++|+.||-
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVT 120 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVA 120 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEc
Confidence 1 258999999875 3556775 45689999995
No 311
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.82 E-value=0.49 Score=45.49 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=41.8
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccc--cCCcccc--cccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIG--SVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~--~aGk~l~--~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
||+|||| |.+|..+.-.|...+-+ |++++--.. ..|+.+. +..+.+...+. .+..-+.+++.++|+|+.+.+.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~-~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNT-KIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCE-EEEECCHHHhCCCCEEEECCCC
Confidence 7999998 99999999988877665 576664322 2232221 11110000010 1111123556899999888763
No 312
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=89.81 E-value=0.2 Score=48.09 Aligned_cols=95 Identities=14% Similarity=0.225 Sum_probs=43.3
Q ss_pred CccEEEEEccccHHHHHHHHHHhc-CCCceEEEEeccccCC-cccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~-HP~~el~~l~S~~~aG-k~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
+..+++|+| +|.-+..-++.|.. +| ++-+.+.+|+... +.+.+....+ +.+.....+. ++.+.++|+|++|+++
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~-~~av~~aDii~taT~s 202 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSA-EEAVRGADIIVTATPS 202 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSH-HHHHTTSSEEEE----
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhccc-cccceeccch-hhhcccCCEEEEccCC
Confidence 335899999 78888888887765 77 6655555554321 1222211111 1111111111 3445789999999998
Q ss_pred cchHHHHH--hcCCCCeEEECCc
Q 021865 140 GTTQEIIK--GLPKSLKIVDLSA 160 (306)
Q Consensus 140 ~~s~~~~~--~l~~g~~VIDlSa 160 (306)
.....++. .+..|..|+-.++
T Consensus 203 ~~~~P~~~~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 203 TTPAPVFDAEWLKPGTHINAIGS 225 (313)
T ss_dssp SSEEESB-GGGS-TT-EEEE-S-
T ss_pred CCCCccccHHHcCCCcEEEEecC
Confidence 76223332 3467887776665
No 313
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.78 E-value=0.67 Score=44.86 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=52.2
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEE---------------eccccCCcc--------cccccCCcccCCCc-ccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM---------------TADRKAGQS--------IGSVFPHLISQDLP-TMV 120 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l---------------~S~~~aGk~--------l~~~~p~l~~~~~~-~~~ 120 (306)
||.|+|+ |-+|.|+++.|...---++..+ ...+..|+. +.+..|.+...... .+.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 6899996 7899999999873222222221 222334442 22334443211000 011
Q ss_pred c--cCcccCCCCCEEEecCCccchHHHHHhc--CCCCeEEEC
Q 021865 121 A--VKDADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVDL 158 (306)
Q Consensus 121 ~--~~~~~~~~~DvVF~alp~~~s~~~~~~l--~~g~~VIDl 158 (306)
+ .+.+-+.+.|+|+.|+.+-.++.++..+ ..++.+||.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIES 121 (312)
T ss_pred CccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 1 1112247899999999988777777543 557788873
No 314
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.73 E-value=1.4 Score=42.40 Aligned_cols=89 Identities=11% Similarity=0.211 Sum_probs=53.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..+|+||| .|-+|+++.+++..+ ..++... .+. ++.... .+ . ...+ ++.+..+|+|.+++|-...
T Consensus 145 gktvGIiG-~G~IG~~vA~~~~~f-gm~V~~~-d~~--~~~~~~---~~---~---~~~l-~ell~~sDvv~lh~Plt~~ 209 (311)
T PRK08410 145 GKKWGIIG-LGTIGKRVAKIAQAF-GAKVVYY-STS--GKNKNE---EY---E---RVSL-EELLKTSDIISIHAPLNEK 209 (311)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhc-CCEEEEE-CCC--cccccc---Cc---e---eecH-HHHhhcCCEEEEeCCCCch
Confidence 36899999 799999999999765 3455444 221 111000 01 0 1112 2335789999999994433
Q ss_pred ------HHHHHhcCCCCeEEECCcccccCC
Q 021865 143 ------QEIIKGLPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 143 ------~~~~~~l~~g~~VIDlSadfRl~~ 166 (306)
.+....+..|..+|..+----.++
T Consensus 210 T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe 239 (311)
T PRK08410 210 TKNLIAYKELKLLKDGAILINVGRGGIVNE 239 (311)
T ss_pred hhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence 344455677888887664444433
No 315
>PRK07890 short chain dehydrogenase; Provisional
Probab=89.66 E-value=0.27 Score=44.12 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|..|.+.|+++-. +++.+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~ 36 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGA-DVVLAA 36 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence 5799999999999999999997643 565554
No 316
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=89.55 E-value=0.63 Score=46.78 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=54.6
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+..||.||| .|-+|.-+++.|.++...++..+-......+.+.+.+ .. ....++++ ...+.++|+||+|+....
T Consensus 177 ~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~---~~-~~~~l~el-~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 177 KDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL---GA-EAVALEEL-LEALAEADVVISSTSAPH 250 (414)
T ss_pred ccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh---CC-eeecHHHH-HHhhhhCCEEEEecCCCc
Confidence 346799999 5899999999999987766665533222223333322 21 11112222 233578999999975332
Q ss_pred h---HH-HHHhcC--CCCeEEECCc
Q 021865 142 T---QE-IIKGLP--KSLKIVDLSA 160 (306)
Q Consensus 142 s---~~-~~~~l~--~g~~VIDlSa 160 (306)
. .+ +..++. +...+||++-
T Consensus 251 ~ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 251 PIITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred cccCHHHHHHHHhcccCeEEEEecC
Confidence 2 33 333442 2357899875
No 317
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.54 E-value=1.2 Score=42.79 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=53.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc-h
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~-s 142 (306)
.+|+|+| .|-+|+++.++|..+ ..++.... +. ++. . .. .. ..+ ++.++.+|+|.+++|-.. +
T Consensus 149 ktvgIiG-~G~IG~~vA~~l~~f-gm~V~~~~-~~--~~~--~---~~---~~---~~l-~ell~~sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLG-HGELGGAVARLAEAF-GMRVLIGQ-LP--GRP--A---RP---DR---LPL-DELLPQVDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhC-CCEEEEEC-CC--CCc--c---cc---cc---cCH-HHHHHhCCEEEECCCCChHH
Confidence 5899999 699999999999866 34555442 22 111 0 00 00 112 233478999999999543 3
Q ss_pred -----HHHHHhcCCCCeEEECCcccccCC
Q 021865 143 -----QEIIKGLPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 143 -----~~~~~~l~~g~~VIDlSadfRl~~ 166 (306)
.+....+..|..+|..+----.++
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde 240 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDE 240 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 344455677888887665444443
No 318
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.52 E-value=0.5 Score=46.66 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=43.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccc-c-cCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-V-FPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~-~-~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
|+|.|+|+ |.+|+.+.+.|... ..+++.+..+...-+.+.+ . .+.+.+ +......+....+.++|.|+++++...
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~-g~~v~vid~~~~~~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGE-NNDVTVIDTDEERLRRLQDRLDVRTVVG-NGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHhhcCEEEEEe-CCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 48999998 99999999999764 3456666432222111211 0 111111 221111222233568999999998755
Q ss_pred hH
Q 021865 142 TQ 143 (306)
Q Consensus 142 s~ 143 (306)
..
T Consensus 78 ~n 79 (453)
T PRK09496 78 TN 79 (453)
T ss_pred HH
Confidence 53
No 319
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=89.51 E-value=0.51 Score=43.79 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=24.3
Q ss_pred EEEEccccHHHHHHHHHHhcCC---CceEEEEec
Q 021865 66 IGLLGASGYTGAEIVRLLANHP---YFGIKLMTA 96 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP---~~el~~l~S 96 (306)
|+||||+|.+|..++..|...+ ..++.++-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~ 34 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDI 34 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeC
Confidence 5899999999999999888654 346766643
No 320
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.48 E-value=0.32 Score=43.89 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=26.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..+|.|+||||.+|..+++.|.++. .++..+.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G-~~v~~~~ 38 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEG-ATVVVGD 38 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC-CEEEEEe
Confidence 3689999999999999999999764 4565553
No 321
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.48 E-value=1 Score=42.99 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=48.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|++|.+|.-+..+|.+.-. .++..-++ ..+ + .+.+.++|+|+.|++...
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~---------------t~~---L----~~~~~~aDIvI~AtG~~~-- 214 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANA-TVTICHSR---------------TQN---L----PELVKQADIIVGAVGKPE-- 214 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCC---------------chh---H----HHHhccCCEEEEccCCCC--
Confidence 5899999999999999999986543 55544321 011 1 122357999999996322
Q ss_pred HHH-HhcCCCCeEEECCcc
Q 021865 144 EII-KGLPKSLKIVDLSAD 161 (306)
Q Consensus 144 ~~~-~~l~~g~~VIDlSad 161 (306)
.+- ..+..|..|||..-.
T Consensus 215 ~v~~~~lk~gavViDvg~n 233 (283)
T PRK14192 215 LIKKDWIKQGAVVVDAGFH 233 (283)
T ss_pred cCCHHHcCCCCEEEEEEEe
Confidence 222 235779999997653
No 322
>PLN02858 fructose-bisphosphate aldolase
Probab=89.46 E-value=0.64 Score=53.22 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=52.6
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
++.+|++|| .|..|..+.+.|.+.- +++...-.+...-+.+.+. +.. ..... .+..+++|+||+|+|+..
T Consensus 323 ~~~~IGfIG-lG~MG~~mA~~L~~~G-~~V~v~dr~~~~~~~l~~~-----Ga~--~~~s~-~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 323 PVKRIGFIG-LGAMGFGMASHLLKSN-FSVCGYDVYKPTLVRFENA-----GGL--AGNSP-AEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCCeEEEEC-chHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-----CCe--ecCCH-HHHHhcCCEEEEecCChH
Confidence 457899998 9999999999998653 3554442111111111110 100 01111 122367999999999655
Q ss_pred h-HHHH-------HhcCCCCeEEECCcc
Q 021865 142 T-QEII-------KGLPKSLKIVDLSAD 161 (306)
Q Consensus 142 s-~~~~-------~~l~~g~~VIDlSad 161 (306)
. .++. +.+..|..|||+|.-
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTV 420 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCC
Confidence 4 3332 234568899999873
No 323
>PRK06153 hypothetical protein; Provisional
Probab=89.46 E-value=0.57 Score=46.72 Aligned_cols=98 Identities=20% Similarity=0.407 Sum_probs=59.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEec----------------cccCCc--c--------cccccCCcccCCC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA----------------DRKAGQ--S--------IGSVFPHLISQDL 116 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S----------------~~~aGk--~--------l~~~~p~l~~~~~ 116 (306)
..||+|||+.| +|+.++..|++-+--+++++-. .+..|+ + +....+.+.. .
T Consensus 176 ~~~VaIVG~GG-~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~--~ 252 (393)
T PRK06153 176 GQRIAIIGLGG-TGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP--H 252 (393)
T ss_pred hCcEEEEcCCc-cHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE--E
Confidence 46899999655 7889999999877666666532 122222 0 0011111100 0
Q ss_pred ccccccCc---ccCCCCCEEEecCCccchHHHHH-hc-CCCCeEEECCcccccC
Q 021865 117 PTMVAVKD---ADFSNVDAVFCCLPHGTTQEIIK-GL-PKSLKIVDLSADFRLR 165 (306)
Q Consensus 117 ~~~~~~~~---~~~~~~DvVF~alp~~~s~~~~~-~l-~~g~~VIDlSadfRl~ 165 (306)
...+++ ..+.++|+||.|+.+..++.++- .+ ..++.+||..-.....
T Consensus 253 --~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~~ 304 (393)
T PRK06153 253 --PEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLELS 304 (393)
T ss_pred --eecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecceec
Confidence 011221 13468999999999998877663 33 5688888876666654
No 324
>PRK07060 short chain dehydrogenase; Provisional
Probab=89.41 E-value=0.38 Score=42.68 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=26.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|..+++.|.++. .+++.+.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g-~~V~~~~ 40 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRG-ARVVAAA 40 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999999764 4666654
No 325
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.39 E-value=0.58 Score=41.58 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=25.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|+||||++|.++++.|+++ ..+++.+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~-G~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE-GARVVVTD 36 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence 58999999999999999999976 34665554
No 326
>PRK07340 ornithine cyclodeaminase; Validated
Probab=89.36 E-value=0.46 Score=45.42 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=50.3
Q ss_pred CccEEEEEccccHHHHHHHHHHhc-CCCceEEEEeccccC-CcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~-HP~~el~~l~S~~~a-Gk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
+..+++|+| +|..|+..++.|.. +|.-+ +.+.+|... -+.+.+.+... +.... ..+. ++.+.++|+|+.|+|.
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~~~-v~v~~r~~~~a~~~a~~~~~~-~~~~~-~~~~-~~av~~aDiVitaT~s 198 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGLPVRR-VWVRGRTAASAAAFCAHARAL-GPTAE-PLDG-EAIPEAVDLVVTATTS 198 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhc-CCeeE-ECCH-HHHhhcCCEEEEccCC
Confidence 346899999 58888988888864 55434 444444321 11222211111 00110 1111 2345789999999997
Q ss_pred cchHHHHHh-cCCCCeEEECCcc
Q 021865 140 GTTQEIIKG-LPKSLKIVDLSAD 161 (306)
Q Consensus 140 ~~s~~~~~~-l~~g~~VIDlSad 161 (306)
.. .++.. +..|..|+-.+++
T Consensus 199 ~~--Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 199 RT--PVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CC--ceeCccCCCCCEEEecCCC
Confidence 64 33332 3567766655543
No 327
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.22 E-value=0.82 Score=42.40 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=54.6
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe---------------ccccCCcc--------cccccCCcccCCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT---------------ADRKAGQS--------IGSVFPHLISQDLPT 118 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~---------------S~~~aGk~--------l~~~~p~l~~~~~~~ 118 (306)
+..||+|+|+ |-+|.++++.|..--.-+++.+- .....|++ +.+..|+.......
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~- 108 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN- 108 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe-
Confidence 3468999998 88999999999854333343331 12233331 22334433211000
Q ss_pred ccccCc----ccCCCCCEEEecCCccchHHHHHhc--CCCCeEEEC
Q 021865 119 MVAVKD----ADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVDL 158 (306)
Q Consensus 119 ~~~~~~----~~~~~~DvVF~alp~~~s~~~~~~l--~~g~~VIDl 158 (306)
..+++ +.+.++|+||.|+.+..+..++..+ ..++.+|+-
T Consensus 109 -~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 109 -ARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred -ccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 11111 2246899999999887776655433 557888873
No 328
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=89.21 E-value=1.2 Score=43.49 Aligned_cols=92 Identities=12% Similarity=0.213 Sum_probs=52.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..+|+||| .|..|..+.+.|.+.. +++.....+........... +.. ..+. .+.++++|+||+|+|....
T Consensus 17 gktIgIIG-~GsmG~AlA~~L~~sG-~~Vvv~~r~~~~s~~~A~~~----G~~---~~s~-~eaa~~ADVVvLaVPd~~~ 86 (330)
T PRK05479 17 GKKVAIIG-YGSQGHAHALNLRDSG-VDVVVGLREGSKSWKKAEAD----GFE---VLTV-AEAAKWADVIMILLPDEVQ 86 (330)
T ss_pred CCEEEEEe-eHHHHHHHHHHHHHCC-CEEEEEECCchhhHHHHHHC----CCe---eCCH-HHHHhcCCEEEEcCCHHHH
Confidence 46899999 8999999999997653 35544332222111111000 110 0111 2334679999999997766
Q ss_pred HHHH-H----hcCCCCeEEECCcccccC
Q 021865 143 QEII-K----GLPKSLKIVDLSADFRLR 165 (306)
Q Consensus 143 ~~~~-~----~l~~g~~VIDlSadfRl~ 165 (306)
..+. + .+..|..| -.++-|.+.
T Consensus 87 ~~V~~~~I~~~Lk~g~iL-~~a~G~~i~ 113 (330)
T PRK05479 87 AEVYEEEIEPNLKEGAAL-AFAHGFNIH 113 (330)
T ss_pred HHHHHHHHHhcCCCCCEE-EECCCCChh
Confidence 5554 3 33456655 444446554
No 329
>PRK06196 oxidoreductase; Provisional
Probab=89.21 E-value=0.5 Score=44.48 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||||.+|.++++.|+.+. .+++.+.
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G-~~Vv~~~ 57 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAG-AHVIVPA 57 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998753 4565554
No 330
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=89.19 E-value=0.96 Score=44.22 Aligned_cols=100 Identities=19% Similarity=0.336 Sum_probs=57.1
Q ss_pred EEEEEccccHHHHHHHHHHhcCC-------CceEEEEeccc-----cCCccccccc--CC-cccCCCcc-cccc-C-ccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHP-------YFGIKLMTADR-----KAGQSIGSVF--PH-LISQDLPT-MVAV-K-DAD 126 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP-------~~el~~l~S~~-----~aGk~l~~~~--p~-l~~~~~~~-~~~~-~-~~~ 126 (306)
||+||| +|-.|..|...|.+.- +.++.+...+. ..-+.+.+.+ ++ +.+..++. +... | .+.
T Consensus 1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 689999 5999999999998532 14555553211 1111111111 11 11111211 1111 1 223
Q ss_pred CCCCCEEEecCCccchHHHHHh----cCCCCeEEECCcccccC
Q 021865 127 FSNVDAVFCCLPHGTTQEIIKG----LPKSLKIVDLSADFRLR 165 (306)
Q Consensus 127 ~~~~DvVF~alp~~~s~~~~~~----l~~g~~VIDlSadfRl~ 165 (306)
++++|++|+|.|+..-.+++.. +..+..+|.++.-+-.+
T Consensus 80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 4789999999998877776654 34567888888777654
No 331
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=89.08 E-value=0.83 Score=42.92 Aligned_cols=91 Identities=9% Similarity=0.023 Sum_probs=47.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccccc-CCcccCCCccccccCcccC--CCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF-PHLISQDLPTMVAVKDADF--SNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~-p~l~~~~~~~~~~~~~~~~--~~~DvVF~alp~~ 140 (306)
|||.|+|+||+ |.+|++.|.+.. .++...+......+.+.... -.+....+. -..+. +.+ .+.|+|+-|+-.-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~-~~~l~-~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTTSEGKHLYPIHQALTVHTGALD-PQELR-EFLKRHSIDILVDATHPF 76 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCccccccccCCceEEECCCC-HHHHH-HHHHhcCCCEEEEcCCHH
Confidence 58999999999 999999998654 45555443333223333210 011111111 11110 111 4689999987543
Q ss_pred ch---HHHHHhc-CCCCeEEEC
Q 021865 141 TT---QEIIKGL-PKSLKIVDL 158 (306)
Q Consensus 141 ~s---~~~~~~l-~~g~~VIDl 158 (306)
.+ .....+. +.|...|.+
T Consensus 77 A~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 77 AAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHHHHhCCcEEEE
Confidence 22 2233333 446666643
No 332
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.01 E-value=0.38 Score=43.17 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=55.0
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEec---------------cccCCc--------ccccccCCcccCCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---------------DRKAGQ--------SIGSVFPHLISQDLPT 118 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S---------------~~~aGk--------~l~~~~p~l~~~~~~~ 118 (306)
+..||.|+| .|-+|.++++.|...---++..+-. ....|+ .+.+..|.+......
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~- 97 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK- 97 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh-
Confidence 346899999 6778999999998654444444422 122232 223344443211000
Q ss_pred ccccC----cccCCCCCEEEecCCccchHHHHHh-c-CCCCeEEECC
Q 021865 119 MVAVK----DADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (306)
Q Consensus 119 ~~~~~----~~~~~~~DvVF~alp~~~s~~~~~~-l-~~g~~VIDlS 159 (306)
..++ ++.+.++|+||.|+.+-.++.+... . ..++.+|+.+
T Consensus 98 -~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 98 -ERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred -hcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 0111 1224689999999988777665543 3 5678888854
No 333
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.86 E-value=0.32 Score=40.45 Aligned_cols=94 Identities=17% Similarity=0.330 Sum_probs=50.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEec----cc-----------cCCcc--------cccccCCcccCCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA----DR-----------KAGQS--------IGSVFPHLISQDLPTM 119 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S----~~-----------~aGk~--------l~~~~p~l~~~~~~~~ 119 (306)
..||+|+| .|-+|.++++.|..-.--++..+-. .. ..|++ +.+.+|.......+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~-- 78 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP-- 78 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE--
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee--
Confidence 36899999 6778999999998644445554421 11 22221 11233332210000
Q ss_pred cccC----cccCCCCCEEEecCCccchHHHHH-hc-CCCCeEEECC
Q 021865 120 VAVK----DADFSNVDAVFCCLPHGTTQEIIK-GL-PKSLKIVDLS 159 (306)
Q Consensus 120 ~~~~----~~~~~~~DvVF~alp~~~s~~~~~-~l-~~g~~VIDlS 159 (306)
..++ .+.++++|+||.|+.+-.+..+.. .. ..+.++|+.+
T Consensus 79 ~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 79 EKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp SHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 1111 122357899999998766655543 33 5678888754
No 334
>PRK12828 short chain dehydrogenase; Provisional
Probab=88.77 E-value=0.66 Score=40.72 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||++|..+++.|+++ ..++..+.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~-G~~v~~~~ 38 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAAR-GARVALIG 38 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHC-CCeEEEEe
Confidence 57999999999999999999876 45665554
No 335
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=88.76 E-value=1.1 Score=46.10 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=51.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s- 142 (306)
.+|+|+| .|-+|+++.+.|..+. .++.... +........ .+ + ......+ ++.++++|+|++++|....
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG-~~V~~~d-~~~~~~~~~----~~-g--~~~~~~l-~ell~~aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFG-MKVLAYD-PYISPERAE----QL-G--VELVDDL-DELLARADFITVHTPLTPET 207 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEC-CCCChhHHH----hc-C--CEEcCCH-HHHHhhCCEEEEccCCChhh
Confidence 6899999 7999999999998763 4555543 211111100 01 1 0001112 2334689999999995533
Q ss_pred -----HHHHHhcCCCCeEEECCccccc
Q 021865 143 -----QEIIKGLPKSLKIVDLSADFRL 164 (306)
Q Consensus 143 -----~~~~~~l~~g~~VIDlSadfRl 164 (306)
.+....+..|..+|+.+----.
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~v 234 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGII 234 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCcee
Confidence 2334455667777776644333
No 336
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=88.71 E-value=0.54 Score=44.98 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=53.4
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCC-cccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aG-k~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
+..+++|+| ||.-|..-++.+..-..++-+.+.+|.... +.+.+......+.+....... ++...++|+|++|++..
T Consensus 116 da~~l~iiG-aG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~-~eav~~aDIV~taT~s~ 193 (301)
T PRK06407 116 NVENFTIIG-SGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNA-EAALRDADTITSITNSD 193 (301)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCH-HHHHhcCCEEEEecCCC
Confidence 347899999 888888888888765556655555543221 112111111001111111111 34457899999999965
Q ss_pred chHHHH--HhcCCCCeEEECCccccc
Q 021865 141 TTQEII--KGLPKSLKIVDLSADFRL 164 (306)
Q Consensus 141 ~s~~~~--~~l~~g~~VIDlSadfRl 164 (306)
. .++ ..+..|..|+-..+ |..
T Consensus 194 ~--P~~~~~~l~pg~hV~aiGs-~~p 216 (301)
T PRK06407 194 T--PIFNRKYLGDEYHVNLAGS-NYP 216 (301)
T ss_pred C--cEecHHHcCCCceEEecCC-CCC
Confidence 4 333 23466777664444 443
No 337
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=88.67 E-value=0.37 Score=47.26 Aligned_cols=93 Identities=19% Similarity=0.317 Sum_probs=57.2
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCc------ccccccCCcccCCCccccccCcccCCCCCEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ------SIGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk------~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~ 135 (306)
+...+.|.|||||+|+-+.+.|..+-. +. ++++|+. ++ .+...++.+. +-+...+ ++..+.++||+.
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~g~-~~-aLAgRs~-~kl~~l~~~LG~~~~~~p---~~~p~~~-~~~~~~~~VVln 77 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLAREGL-TA-ALAGRSS-AKLDALRASLGPEAAVFP---LGVPAAL-EAMASRTQVVLN 77 (382)
T ss_pred cceeEEEEccccchhHHHHHHHHHcCC-ch-hhccCCH-HHHHHHHHhcCccccccC---CCCHHHH-HHHHhcceEEEe
Confidence 346799999999999999999986532 22 4444432 22 1222222221 1111112 223468999999
Q ss_pred cCCccc--hHHHHHhc-CCCCeEEECCcc
Q 021865 136 CLPHGT--TQEIIKGL-PKSLKIVDLSAD 161 (306)
Q Consensus 136 alp~~~--s~~~~~~l-~~g~~VIDlSad 161 (306)
|.+.-. +..++++. ..|.--.|+++.
T Consensus 78 cvGPyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 78 CVGPYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred ccccccccccHHHHHHHHhCCCeeecccc
Confidence 987433 35677776 679999999994
No 338
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=88.59 E-value=1.6 Score=41.85 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=51.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc------CCcccccccCCcccCCCccccccCcccCCCCCEEEecC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK------AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~------aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~al 137 (306)
|||.|+| +|-+|+-+.-.|.+.. -++..+...+. .|-.+.+.... .........+.+....+|+||.++
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~---~~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGN---FTTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCc---cccccccccChhhcCCCCEEEEEe
Confidence 6899999 7889999999998877 45555553332 23333322210 011111122234446799999999
Q ss_pred CccchHHHHHhc----CCCCeEE
Q 021865 138 PHGTTQEIIKGL----PKSLKIV 156 (306)
Q Consensus 138 p~~~s~~~~~~l----~~g~~VI 156 (306)
-+....+.++.+ .....|+
T Consensus 76 Ka~q~~~al~~l~~~~~~~t~vl 98 (307)
T COG1893 76 KAYQLEEALPSLAPLLGPNTVVL 98 (307)
T ss_pred ccccHHHHHHHhhhcCCCCcEEE
Confidence 877766666544 3344455
No 339
>PLN02602 lactate dehydrogenase
Probab=88.50 E-value=0.89 Score=44.61 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=42.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEecccc--CCcccc--cccCCcccCCCccccc-cCcccCCCCCEEEecC
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK--AGQSIG--SVFPHLISQDLPTMVA-VKDADFSNVDAVFCCL 137 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~--aGk~l~--~~~p~l~~~~~~~~~~-~~~~~~~~~DvVF~al 137 (306)
.||+|||| |.+|..+.-.|...+-. |++++-.... .|+.+. +.-+.+.. ..+.. .+.+++.++|+|+++.
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~---~~i~~~~dy~~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPR---TKILASTDYAVTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCC---CEEEeCCCHHHhCCCCEEEECC
Confidence 69999996 99999999988866655 5777653221 232221 11111110 11211 1234568999999986
Q ss_pred Cc
Q 021865 138 PH 139 (306)
Q Consensus 138 p~ 139 (306)
+.
T Consensus 114 G~ 115 (350)
T PLN02602 114 GA 115 (350)
T ss_pred CC
Confidence 53
No 340
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=88.44 E-value=0.55 Score=44.09 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=46.4
Q ss_pred EccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch-HHHH-
Q 021865 69 LGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT-QEII- 146 (306)
Q Consensus 69 iGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s-~~~~- 146 (306)
|| .|..|..+.+.|.+.- .++.....+...-+.+.+. +.. ..... .+..+++|+||+|+|.... .++.
T Consensus 2 IG-lG~mG~~mA~~L~~~G-~~V~v~dr~~~~~~~l~~~-----g~~--~~~s~-~~~~~~advVil~vp~~~~~~~v~~ 71 (288)
T TIGR01692 2 IG-LGNMGGPMAANLLKAG-HPVRVFDLFPDAVEEAVAA-----GAQ--AAASP-AEAAEGADRVITMLPAGQHVISVYS 71 (288)
T ss_pred Cc-ccHhHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHc-----CCe--ecCCH-HHHHhcCCEEEEeCCChHHHHHHHc
Confidence 45 8999999999998643 3454442211111111110 100 01111 2234679999999998544 3333
Q ss_pred ------HhcCCCCeEEECCccc
Q 021865 147 ------KGLPKSLKIVDLSADF 162 (306)
Q Consensus 147 ------~~l~~g~~VIDlSadf 162 (306)
+.+..|..|||.|.-.
T Consensus 72 g~~~l~~~~~~g~~vid~st~~ 93 (288)
T TIGR01692 72 GDEGILPKVAKGSLLIDCSTID 93 (288)
T ss_pred CcchHhhcCCCCCEEEECCCCC
Confidence 2345688999999533
No 341
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.43 E-value=0.99 Score=43.21 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=50.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
-.+|.|+|.++.+|.-|..+|.+. +..++..-++ ..++ .+...++|+|+.|.|..
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~-~atVt~~hs~---------------t~~l-------~~~~~~ADIVV~avG~~-- 212 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQA-GATVTICHSK---------------TRDL-------AAHTRQADIVVAAVGKR-- 212 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-CCEEEEecCC---------------CCCH-------HHHhhhCCEEEEcCCCc--
Confidence 368999999999999999999854 3444433211 1111 12236799999999843
Q ss_pred HHHHH--hcCCCCeEEECCccc
Q 021865 143 QEIIK--GLPKSLKIVDLSADF 162 (306)
Q Consensus 143 ~~~~~--~l~~g~~VIDlSadf 162 (306)
.++. .+..|..|||.+-.+
T Consensus 213 -~~i~~~~ik~gavVIDVGin~ 233 (285)
T PRK14189 213 -NVLTADMVKPGATVIDVGMNR 233 (285)
T ss_pred -CccCHHHcCCCCEEEEccccc
Confidence 3342 357899999988765
No 342
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.43 E-value=1 Score=43.54 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=41.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc--CCcccccccC-CcccCCCccccc-cCcccCCCCCEEEecC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFP-HLISQDLPTMVA-VKDADFSNVDAVFCCL 137 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~--aGk~l~~~~p-~l~~~~~~~~~~-~~~~~~~~~DvVF~al 137 (306)
++.||+||| .|.+|..+...|+.....+++++--... .|+.+...+- .+.... ..+.. .+.+++.++|+|+.+.
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~-~~I~~~~d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSN-SKVIGTNNYEDIAGSDVVIVTA 82 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCC-eEEEECCCHHHhCCCCEEEECC
Confidence 346899999 5999999999887655456655542221 2222221110 000101 11221 2234568999999977
Q ss_pred C
Q 021865 138 P 138 (306)
Q Consensus 138 p 138 (306)
+
T Consensus 83 g 83 (321)
T PTZ00082 83 G 83 (321)
T ss_pred C
Confidence 4
No 343
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.42 E-value=1 Score=46.39 Aligned_cols=91 Identities=13% Similarity=0.233 Sum_probs=52.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..+|+|+| .|-+|+++.+.|..+- .++..+. +........+ + +.. ...+ ++.+.++|+|++++|....
T Consensus 140 gktvgIiG-~G~IG~~vA~~l~~fG-~~V~~~d-~~~~~~~~~~----~-g~~---~~~l-~ell~~aDiV~l~lP~t~~ 207 (526)
T PRK13581 140 GKTLGIIG-LGRIGSEVAKRAKAFG-MKVIAYD-PYISPERAAQ----L-GVE---LVSL-DELLARADFITLHTPLTPE 207 (526)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEC-CCCChhHHHh----c-CCE---EEcH-HHHHhhCCEEEEccCCChH
Confidence 36899999 6999999999998653 4555543 2111000000 0 101 1112 2334789999999996533
Q ss_pred ------HHHHHhcCCCCeEEECCcccccC
Q 021865 143 ------QEIIKGLPKSLKIVDLSADFRLR 165 (306)
Q Consensus 143 ------~~~~~~l~~g~~VIDlSadfRl~ 165 (306)
.+....+..|..+|+.|----.+
T Consensus 208 t~~li~~~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 208 TRGLIGAEELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred hhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence 33444556677777766543333
No 344
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.38 E-value=0.68 Score=41.66 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=25.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|.++++.|.++. .++..+.
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g-~~v~~~~ 37 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAG-ATVVVCG 37 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 679999999999999999998763 4665554
No 345
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=88.37 E-value=0.77 Score=41.30 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=25.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|+|.|+||||.+|.++++.|.++ ..++..+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEE
Confidence 57999999999999999999976 34665554
No 346
>PRK06823 ornithine cyclodeaminase; Validated
Probab=88.24 E-value=0.81 Score=44.14 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=53.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCC-cccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aG-k~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
+..+++|+| ||..+..-++.+.....++-+.+.+++... +.+.+..... +.+....... ++...++|+|++|++..
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~-~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-GFAVNTTLDA-AEVAHAANLIVTTTPSR 203 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-CCcEEEECCH-HHHhcCCCEEEEecCCC
Confidence 446899999 788888888877754455555555544322 1122211111 1111001111 33457899999999865
Q ss_pred chHHHH--HhcCCCCeEEECCccc
Q 021865 141 TTQEII--KGLPKSLKIVDLSADF 162 (306)
Q Consensus 141 ~s~~~~--~~l~~g~~VIDlSadf 162 (306)
. .++ ..+..|..|+-.+++.
T Consensus 204 ~--P~~~~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 204 E--PLLQAEDIQPGTHITAVGADS 225 (315)
T ss_pred C--ceeCHHHcCCCcEEEecCCCC
Confidence 3 333 2356788877655543
No 347
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=88.18 E-value=2.1 Score=40.90 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=55.9
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+..||.|.|.||..|+.+++-|...+.- ++.-+..+.-+..+. .+ .-++.+.++ ++.. +.|+++++.|...
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~----G~--~~y~sv~dl-p~~~-~~Dlavi~vpa~~ 75 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVL----GL--PVFDSVKEA-VEET-GANASVIFVPAPF 75 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceec----Ce--eccCCHHHH-hhcc-CCCEEEEecCHHH
Confidence 4568999999999999999999876544 555443331111111 01 111122222 1111 3799999999988
Q ss_pred hHHHHHhc-CCCCe-EEECCcccc
Q 021865 142 TQEIIKGL-PKSLK-IVDLSADFR 163 (306)
Q Consensus 142 s~~~~~~l-~~g~~-VIDlSadfR 163 (306)
..+.+..+ ++|++ +|=+|+-|.
T Consensus 76 v~~~l~e~~~~Gvk~avIis~Gf~ 99 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVCITEGIP 99 (286)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCC
Confidence 87777665 66642 223666664
No 348
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=88.08 E-value=0.51 Score=43.09 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=22.2
Q ss_pred EEccccHHHHHHHHHHhcCCC-ceEEEEec
Q 021865 68 LLGASGYTGAEIVRLLANHPY-FGIKLMTA 96 (306)
Q Consensus 68 IiGATGyvG~ELlrlL~~HP~-~el~~l~S 96 (306)
|-|||||.|..|++.|+..+. .++..+..
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR 30 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVR 30 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 579999999999999987655 58888864
No 349
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.03 E-value=0.59 Score=42.59 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=24.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|.++++.|.+.. .++..+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G-~~v~~~~ 36 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALG-ARVAIGD 36 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEE
Confidence 579999999999999999998753 4555443
No 350
>PRK08263 short chain dehydrogenase; Provisional
Probab=88.02 E-value=0.7 Score=42.33 Aligned_cols=31 Identities=13% Similarity=-0.126 Sum_probs=25.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||||.+|+.+++.|.++ ..++..+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~-g~~V~~~~ 34 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALER-GDRVVATA 34 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC-CCEEEEEE
Confidence 57999999999999999999875 35565554
No 351
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=88.00 E-value=1 Score=43.10 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=52.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcc--cCCCccccccCcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~--~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+||+.|| .|-.|.-+.+.|.+-- +++...- +...+... .+. +... .... .+...++|+||+|+|.+.
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG-~~v~v~~--r~~~ka~~----~~~~~Ga~~--a~s~-~eaa~~aDvVitmv~~~~ 69 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAG-HEVTVYN--RTPEKAAE----LLAAAGATV--AASP-AEAAAEADVVITMLPDDA 69 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCC-CEEEEEe--CChhhhhH----HHHHcCCcc--cCCH-HHHHHhCCEEEEecCCHH
Confidence 4899999 9999999999998532 3344443 22222111 011 1110 1111 233468999999999988
Q ss_pred hHHHHH--------hcCCCCeEEECCccc
Q 021865 142 TQEIIK--------GLPKSLKIVDLSADF 162 (306)
Q Consensus 142 s~~~~~--------~l~~g~~VIDlSadf 162 (306)
.-+-+- .+.+|..|||+|.--
T Consensus 70 ~V~~V~~g~~g~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 70 AVRAVLFGENGLLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred HHHHHHhCccchhhcCCCCCEEEECCCCC
Confidence 755331 123699999998743
No 352
>PRK12746 short chain dehydrogenase; Provisional
Probab=87.98 E-value=0.89 Score=40.71 Aligned_cols=33 Identities=24% Similarity=0.085 Sum_probs=26.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEecc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~ 97 (306)
.++.|.||||.+|.+|++.|+++- .++..+..|
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G-~~v~i~~~r 39 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDG-ALVAIHYGR 39 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCC
Confidence 589999999999999999998763 455554333
No 353
>PRK06181 short chain dehydrogenase; Provisional
Probab=87.97 E-value=0.67 Score=41.81 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=25.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||||.+|.++++.|.+.- .+++.+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~ 32 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG-AQLVLAA 32 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998553 4666654
No 354
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.96 E-value=0.99 Score=42.39 Aligned_cols=102 Identities=15% Similarity=0.234 Sum_probs=55.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCc----ccccccCCcc----cCCC---------ccccc-cCc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ----SIGSVFPHLI----SQDL---------PTMVA-VKD 124 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk----~l~~~~p~l~----~~~~---------~~~~~-~~~ 124 (306)
..||+||| .|+.|..+...|+++ ..++..+-.+...-+ .+.+..-.+. .... ..+.. .+.
T Consensus 3 i~~I~ViG-aG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 3 IKVIGVVG-SGVMGQGIAQVFART-GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 36899999 599999999999876 345655532211100 0100000000 0000 00101 111
Q ss_pred ccCCCCCEEEecCCccch--HHHHHh----cCCCCeEEECCcccccCC
Q 021865 125 ADFSNVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRLRD 166 (306)
Q Consensus 125 ~~~~~~DvVF~alp~~~s--~~~~~~----l~~g~~VIDlSadfRl~~ 166 (306)
+.++++|+||.|.|.... .++... +..++.++.+++......
T Consensus 81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~ 128 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAE 128 (291)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHH
Confidence 335789999999998753 334333 345778888888766544
No 355
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=87.87 E-value=0.86 Score=40.64 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=26.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|.+|.|.||||.+|..+++.|.++. .+++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g-~~v~~~~ 33 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG-WSVGINY 33 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 5689999999999999999999764 4555444
No 356
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=87.71 E-value=0.85 Score=46.25 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=43.2
Q ss_pred CccEEEEEccccHHHHHHHHHHhcC-------CCc-eEEEEecc--ccCCcccc--cc-cCCcccCCCccccccCcccCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANH-------PYF-GIKLMTAD--RKAGQSIG--SV-FPHLISQDLPTMVAVKDADFS 128 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~H-------P~~-el~~l~S~--~~aGk~l~--~~-~p~l~~~~~~~~~~~~~~~~~ 128 (306)
+..||+|+||+|.+|..++-.|... +-. +|+.+--. ...|+.+. +. +|-+. +. .+..-+.+++.
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~--~v-~i~~~~ye~~k 175 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLR--EV-SIGIDPYEVFQ 175 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcC--ce-EEecCCHHHhC
Confidence 3589999999999999999988855 333 45544211 11222111 11 12111 11 11111235678
Q ss_pred CCCEEEecCCc
Q 021865 129 NVDAVFCCLPH 139 (306)
Q Consensus 129 ~~DvVF~alp~ 139 (306)
++|+|+++.+.
T Consensus 176 daDiVVitAG~ 186 (444)
T PLN00112 176 DAEWALLIGAK 186 (444)
T ss_pred cCCEEEECCCC
Confidence 99999998865
No 357
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=87.70 E-value=0.98 Score=43.30 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=23.0
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
|.|.|+||++|+.|...|.... .+++.++.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g-h~v~iltR 30 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG-HQVTILTR 30 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC-CeEEEEEc
Confidence 5799999999999999996532 23666653
No 358
>PLN02996 fatty acyl-CoA reductase
Probab=87.59 E-value=0.89 Score=46.34 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=26.1
Q ss_pred cEEEEEccccHHHHHHHHHHh-cCCCce-EEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLA-NHPYFG-IKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~-~HP~~e-l~~l~ 95 (306)
.+|.|-|||||+|..|++.|+ ..|++. +..+.
T Consensus 12 k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~Lv 45 (491)
T PLN02996 12 KTILVTGATGFLAKIFVEKILRVQPNVKKLYLLL 45 (491)
T ss_pred CeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 569999999999999999877 467774 55555
No 359
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.50 E-value=2.6 Score=36.53 Aligned_cols=76 Identities=8% Similarity=0.167 Sum_probs=46.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+| .|-+|...++.|++. ..+++.+ +. ...+.+.+ .+.+. . ....+++.++.++|+||.|+++....
T Consensus 14 ~~vlVvG-GG~va~rka~~Ll~~-ga~V~VI-sp-~~~~~l~~-l~~i~---~-~~~~~~~~dl~~a~lViaaT~d~e~N 84 (157)
T PRK06719 14 KVVVIIG-GGKIAYRKASGLKDT-GAFVTVV-SP-EICKEMKE-LPYIT---W-KQKTFSNDDIKDAHLIYAATNQHAVN 84 (157)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEE-cC-ccCHHHHh-ccCcE---E-EecccChhcCCCceEEEECCCCHHHH
Confidence 5799999 799999999988864 3455555 32 22222222 11111 0 11223455678899999999887765
Q ss_pred HHHHh
Q 021865 144 EIIKG 148 (306)
Q Consensus 144 ~~~~~ 148 (306)
..+..
T Consensus 85 ~~i~~ 89 (157)
T PRK06719 85 MMVKQ 89 (157)
T ss_pred HHHHH
Confidence 54433
No 360
>PRK09135 pteridine reductase; Provisional
Probab=87.43 E-value=1.1 Score=39.74 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=26.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||+|++|..+++.|+++ ..++..+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~-g~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAA-GYRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEc
Confidence 57999999999999999999976 45665554
No 361
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.21 E-value=1.1 Score=39.99 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=24.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
.++.|.||||.+|.++++.|.++. .+++.+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~ 34 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEG-YDIAVN 34 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEE
Confidence 589999999999999999999874 355443
No 362
>PRK12367 short chain dehydrogenase; Provisional
Probab=87.16 E-value=1.2 Score=40.80 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|.++.+.|+++- .+++.+.
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G-~~Vi~~~ 45 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKG-AKVIGLT 45 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 579999999999999999998764 4565554
No 363
>PRK06924 short chain dehydrogenase; Provisional
Probab=87.12 E-value=1.1 Score=40.14 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=26.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|+++.|+||||.+|..+++.|.++. .++..+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g-~~V~~~~ 32 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKG-THVISIS 32 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcC-CEEEEEe
Confidence 4579999999999999999999764 4666554
No 364
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.09 E-value=0.96 Score=43.49 Aligned_cols=75 Identities=11% Similarity=0.228 Sum_probs=51.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcC---CCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~H---P~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
.+|.|||.|..+|.=|.-+|.++ -...++...++. .+ + .+....+|+|+.|.+..
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------------~~---l----~~~~~~ADIvI~Avg~~ 217 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------------KD---I----PSYTRQADILIAAIGKA 217 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------------hh---H----HHHHHhCCEEEEecCcc
Confidence 68999999999999999999863 334444443211 01 1 12236799999999543
Q ss_pred chHHHH-Hh-cCCCCeEEECCcccc
Q 021865 141 TTQEII-KG-LPKSLKIVDLSADFR 163 (306)
Q Consensus 141 ~s~~~~-~~-l~~g~~VIDlSadfR 163 (306)
.++ +. +..|..|||.+-++-
T Consensus 218 ---~li~~~~vk~GavVIDVgi~~~ 239 (295)
T PRK14174 218 ---RFITADMVKPGAVVIDVGINRI 239 (295)
T ss_pred ---CccCHHHcCCCCEEEEeecccc
Confidence 333 33 477999999998874
No 365
>PRK08177 short chain dehydrogenase; Provisional
Probab=87.07 E-value=1.1 Score=39.67 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=26.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|.+|.|.|+||.+|..+++.|+++. .++..+.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~ 32 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG-WQVTATV 32 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC-CEEEEEe
Confidence 4679999999999999999999874 4666654
No 366
>PLN02503 fatty acyl-CoA reductase 2
Probab=87.06 E-value=0.81 Score=48.14 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=26.6
Q ss_pred cEEEEEccccHHHHHHHHHHh-cCCCc-eEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLA-NHPYF-GIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~-~HP~~-el~~l~ 95 (306)
++|.|.|||||+|..|++.|+ ..|++ ++..+.
T Consensus 120 k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~Lv 153 (605)
T PLN02503 120 KNFLITGATGFLAKVLIEKILRTNPDVGKIYLLI 153 (605)
T ss_pred CEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 679999999999999999888 47877 555554
No 367
>PRK06398 aldose dehydrogenase; Validated
Probab=87.04 E-value=0.97 Score=41.11 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=25.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|.++.+.|.++. .+++.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G-~~Vi~~~ 37 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEG-SNVINFD 37 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 579999999999999999998764 3555543
No 368
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=87.01 E-value=0.92 Score=46.28 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=34.9
Q ss_pred cEEEEEccccHHHHHHHHHHh-cCCCceEEEEeccccCCcccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAGQSIG 105 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~-~HP~~el~~l~S~~~aGk~l~ 105 (306)
..|.|.||||+.|.-|++.|+ ..|++.-.++.-|...|+...
T Consensus 13 k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~ 55 (467)
T KOG1221|consen 13 KTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQ 55 (467)
T ss_pred CeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHH
Confidence 569999999999999999887 589998777767788887443
No 369
>PRK08017 oxidoreductase; Provisional
Probab=86.77 E-value=1.2 Score=39.88 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=25.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||||.+|..+++.|.++. .+++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998663 4665553
No 370
>PRK07102 short chain dehydrogenase; Provisional
Probab=86.76 E-value=1 Score=40.24 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=26.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|++|.|.||||.+|..+++.|++. ..+++.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~-G~~Vi~~~ 32 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA-GARLYLAA 32 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEe
Confidence 568999999999999999999976 34565554
No 371
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.75 E-value=1.1 Score=40.08 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=26.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.++.|.||||++|..+++.|+++.. +++.+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~ 38 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-AVAIAD 38 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 46799999999999999999997754 565553
No 372
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.72 E-value=1 Score=42.89 Aligned_cols=96 Identities=23% Similarity=0.329 Sum_probs=49.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccC-Cccccccc--CC-cccCCCc-cccc-cC-cccC-CCCCEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVF--PH-LISQDLP-TMVA-VK-DADF-SNVDAVFC 135 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~a-Gk~l~~~~--p~-l~~~~~~-~~~~-~~-~~~~-~~~DvVF~ 135 (306)
|||+|+|| |-.|..+...|.+.- .++.++ +|+.. =+.+.+.+ +. +.+..++ .+.. .+ .+.. .++|++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g-~~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliii 77 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKK-ISVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIIL 77 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCC-CeEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEE
Confidence 47999995 999999999998542 345544 33221 01111100 00 1111111 0000 01 1222 47899999
Q ss_pred cCCccchHHHHHhc-----CCCCeEEECCccc
Q 021865 136 CLPHGTTQEIIKGL-----PKSLKIVDLSADF 162 (306)
Q Consensus 136 alp~~~s~~~~~~l-----~~g~~VIDlSadf 162 (306)
|+|+....++++.+ ..+..||-+..-+
T Consensus 78 avks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 78 AVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 99987776655433 3345555444433
No 373
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=86.71 E-value=0.78 Score=45.89 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=26.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
+++|.|.||||.+|.++++.|.+. ..++..+..
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~-G~~Vi~l~r 210 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ-GAKVVALTS 210 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 468999999999999999999865 346666653
No 374
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=86.66 E-value=0.61 Score=40.42 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=51.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccC---------CC--------ccc--cccCc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQ---------DL--------PTM--VAVKD 124 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~---------~~--------~~~--~~~~~ 124 (306)
.||.|+| +|-+|..-+++|..++.- ++.+-.+...-+.....+...... +. +.. ..+ .
T Consensus 21 ~~vvv~G-~G~vg~gA~~~~~~lGa~-v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~ 97 (168)
T PF01262_consen 21 AKVVVTG-AGRVGQGAAEIAKGLGAE-VVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF-A 97 (168)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHTT-E-EEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH-H
T ss_pred eEEEEEC-CCHHHHHHHHHHhHCCCE-EEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH-H
Confidence 6888888 999999999999988653 333332111111111111110000 00 000 001 1
Q ss_pred ccCCCCCEEEec-C------CccchHHHHHhcCCCCeEEECCcccc
Q 021865 125 ADFSNVDAVFCC-L------PHGTTQEIIKGLPKSLKIVDLSADFR 163 (306)
Q Consensus 125 ~~~~~~DvVF~a-l------p~~~s~~~~~~l~~g~~VIDlSadfR 163 (306)
+.+..+|+|+.+ + |.-++.+.++.+.+|..|+|+|.|.=
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~g 143 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQG 143 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGGT
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecCC
Confidence 123568999863 2 34455777788889999999999853
No 375
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=86.58 E-value=0.95 Score=44.82 Aligned_cols=38 Identities=16% Similarity=0.418 Sum_probs=32.5
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKA 100 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~a 100 (306)
|+|+.|+|+||-+|.+-++.+.+||+- +++.++..++.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~ 39 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNV 39 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcH
Confidence 578999999999999999999999875 88888754443
No 376
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.99 E-value=1.3 Score=42.51 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=51.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcC-CCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~H-P~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
.+|.|||.|..+|.=|..+|.++ -+..++..-|+. .+ + .+...++|+|+.|.+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T---------------~~---l----~~~~k~ADIvV~AvGkp-- 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT---------------RD---L----AAHTRRADIIVAAAGVA-- 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC---------------CC---H----HHHHHhCCEEEEecCCc--
Confidence 68999999999999999999875 455555443221 11 1 12235799999999754
Q ss_pred HHHHH-h-cCCCCeEEECCccc
Q 021865 143 QEIIK-G-LPKSLKIVDLSADF 162 (306)
Q Consensus 143 ~~~~~-~-l~~g~~VIDlSadf 162 (306)
++++ . +..|..|||.+-.+
T Consensus 215 -~~i~~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 -HLVTADMVKPGAAVLDVGVSR 235 (284)
T ss_pred -CccCHHHcCCCCEEEEccccc
Confidence 3342 2 47799999987665
No 377
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.98 E-value=0.89 Score=45.52 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=22.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
|||.|+| |||||...--.|+++- .+++.+
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~G-HeVv~v 29 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELG-HEVVCV 29 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcC-CeEEEE
Confidence 7899999 9999999999998643 234444
No 378
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=85.84 E-value=2.9 Score=42.21 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=54.1
Q ss_pred cEEEEEccc---cHHHHHHHHHHhcCCCc-eEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 64 VRIGLLGAS---GYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 64 ~kVaIiGAT---GyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
.+|+||||| |-.|..+++.|.++..- ++..+ ..+. ..+. .+ .-++.+.++ + ..+|++++|+|.
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~V-np~~--~~i~----G~--~~~~sl~~l-p---~~~Dlavi~vp~ 74 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPV-NPKA--GEIL----GV--KAYPSVLEI-P---DPVDLAVIVVPA 74 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEE-CCCC--CccC----Cc--cccCCHHHC-C---CCCCEEEEecCH
Confidence 579999998 66799999999877643 45434 3221 1111 00 011122222 1 468999999999
Q ss_pred cchHHHHHhc-CCCCe-EEECCccccc
Q 021865 140 GTTQEIIKGL-PKSLK-IVDLSADFRL 164 (306)
Q Consensus 140 ~~s~~~~~~l-~~g~~-VIDlSadfRl 164 (306)
....+.++.+ ++|++ +|=+|+-|.-
T Consensus 75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e 101 (447)
T TIGR02717 75 KYVPQVVEECGEKGVKGAVVITAGFKE 101 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccc
Confidence 9988888766 66643 3335666653
No 379
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.73 E-value=0.83 Score=44.52 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=53.6
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEecc---------------ccCC----------cccccccCCcccCC
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAG----------QSIGSVFPHLISQD 115 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~---------------~~aG----------k~l~~~~p~l~~~~ 115 (306)
-+..||.|+|+ |-+|.++++.|...-.-+++.+-.+ ...| +.+.+..|.+....
T Consensus 22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 34468999996 5699999999986443344443221 1122 12333444443110
Q ss_pred CccccccC----cccCCCCCEEEecCCccchHHHHHhc--CCCCeEEEC
Q 021865 116 LPTMVAVK----DADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVDL 158 (306)
Q Consensus 116 ~~~~~~~~----~~~~~~~DvVF~alp~~~s~~~~~~l--~~g~~VIDl 158 (306)
. ..+++ ++.++++|+|+.|+.+..+..++-.+ ..++.+|.-
T Consensus 101 ~--~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 101 V--VTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred E--eccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 00111 12247899999999887776655433 457777753
No 380
>PLN02858 fructose-bisphosphate aldolase
Probab=85.64 E-value=1.4 Score=50.50 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=52.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..||++|| .|..|..+.+.|.++. +++...-.++..-+.+.+ . +... .... .+..+++|+||+|+|++..
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G-~~v~v~dr~~~~~~~l~~----~-Ga~~--~~s~-~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSG-FKVQAFEISTPLMEKFCE----L-GGHR--CDSP-AEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCC-CeEEEEcCCHHHHHHHHH----c-CCee--cCCH-HHHHhcCCEEEEEcCChHH
Confidence 46799999 9999999999998753 455444211111111111 0 1100 1111 1223679999999998876
Q ss_pred HHHH--------HhcCCCCeEEECCcc
Q 021865 143 QEII--------KGLPKSLKIVDLSAD 161 (306)
Q Consensus 143 ~~~~--------~~l~~g~~VIDlSad 161 (306)
.+-+ +.+..|..|||.|.-
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi 100 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTI 100 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCC
Confidence 4422 223468899998853
No 381
>PRK07589 ornithine cyclodeaminase; Validated
Probab=85.55 E-value=1 Score=44.20 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=50.9
Q ss_pred CccEEEEEccccHHHHHHHHHHhc-CCCceEEEEeccccCC-cccccccCCcccCCCccccccCcccCCCCCEEEecCCc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~-HP~~el~~l~S~~~aG-k~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
...+++|+| +|.-+...++.+.. .|--++ .+.+|.... +.+.+..... +.+....... ++...++|+|++|+++
T Consensus 128 da~~l~iiG-aG~QA~~~l~a~~~vr~i~~V-~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~-~~av~~ADIIvtaT~S 203 (346)
T PRK07589 128 DSRTMALIG-NGAQSEFQALAFKALLGIEEI-RLYDIDPAATAKLARNLAGP-GLRIVACRSV-AEAVEGADIITTVTAD 203 (346)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCceEE-EEEeCCHHHHHHHHHHHHhc-CCcEEEeCCH-HHHHhcCCEEEEecCC
Confidence 346799999 78888877776664 554344 444443221 2222111110 1111111111 3345789999999985
Q ss_pred cchHHHHH--hcCCCCeEEECCccccc
Q 021865 140 GTTQEIIK--GLPKSLKIVDLSADFRL 164 (306)
Q Consensus 140 ~~s~~~~~--~l~~g~~VIDlSadfRl 164 (306)
.....+++ .+..|..|+ +-|.|+.
T Consensus 204 ~~~~Pvl~~~~lkpG~hV~-aIGs~~p 229 (346)
T PRK07589 204 KTNATILTDDMVEPGMHIN-AVGGDCP 229 (346)
T ss_pred CCCCceecHHHcCCCcEEE-ecCCCCC
Confidence 43223332 346787755 4444553
No 382
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=85.52 E-value=0.98 Score=40.92 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=25.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|.++++.|++. ..++..+.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAE-GARVAVLE 37 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEe
Confidence 57999999999999999999976 34565554
No 383
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=85.47 E-value=1.4 Score=39.02 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=24.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
|..+.|.||+|.+|.++++.|+++. .++..+
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g-~~v~~~ 31 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEG-YTVAVN 31 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEE
Confidence 3579999999999999999998753 455543
No 384
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=85.46 E-value=2.6 Score=33.59 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=45.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
..+|.|+|+ |-+|..=++.|++.. .+++.++.+- ....+... +.. ..+ +.+++++|+||.|+++...
T Consensus 7 ~~~vlVvGg-G~va~~k~~~Ll~~g-A~v~vis~~~---~~~~~~i~-~~~------~~~-~~~l~~~~lV~~at~d~~~ 73 (103)
T PF13241_consen 7 GKRVLVVGG-GPVAARKARLLLEAG-AKVTVISPEI---EFSEGLIQ-LIR------REF-EEDLDGADLVFAATDDPEL 73 (103)
T ss_dssp T-EEEEEEE-SHHHHHHHHHHCCCT-BEEEEEESSE---HHHHTSCE-EEE------SS--GGGCTTESEEEE-SS-HHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEECCch---hhhhhHHH-HHh------hhH-HHHHhhheEEEecCCCHHH
Confidence 468999996 999999999998775 6777775432 10111111 111 112 2456789999999987655
Q ss_pred HH-HHHhc-CCCCeE
Q 021865 143 QE-IIKGL-PKSLKI 155 (306)
Q Consensus 143 ~~-~~~~l-~~g~~V 155 (306)
.+ +.... ..++.|
T Consensus 74 n~~i~~~a~~~~i~v 88 (103)
T PF13241_consen 74 NEAIYADARARGILV 88 (103)
T ss_dssp HHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhCCEEE
Confidence 44 44444 345544
No 385
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.35 E-value=1.4 Score=43.55 Aligned_cols=80 Identities=16% Similarity=0.327 Sum_probs=46.5
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcc--cCCCccccccCcccCCCCCEEEecCC
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLP 138 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~--~~~~~~~~~~~~~~~~~~DvVF~alp 138 (306)
..+.++.|+|+ |.+|..+++.|.++ +.+++.+......-+.+.+.++... ..|..+.+.+....+.++|.|+.+++
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~-~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKE-GYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 45688999997 99999999999864 3356566433222122222111111 12222222232334578999999998
Q ss_pred ccch
Q 021865 139 HGTT 142 (306)
Q Consensus 139 ~~~s 142 (306)
+...
T Consensus 307 ~~~~ 310 (453)
T PRK09496 307 DDEA 310 (453)
T ss_pred CcHH
Confidence 7654
No 386
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.29 E-value=0.94 Score=40.82 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=25.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+++.|.||+|.+|.++.+.|.++. .++..+.
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G-~~v~~~~ 38 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREG-AKVAVLY 38 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998764 3555544
No 387
>PLN02306 hydroxypyruvate reductase
Probab=85.23 E-value=3.3 Score=41.22 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=51.4
Q ss_pred cEEEEEccccHHHHHHHHHHh-cCCCceEEEEeccccCC-cccccccC-Ccc---cCCC--ccccccCcccCCCCCEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAG-QSIGSVFP-HLI---SQDL--PTMVAVKDADFSNVDAVFC 135 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~-~HP~~el~~l~S~~~aG-k~l~~~~p-~l~---~~~~--~~~~~~~~~~~~~~DvVF~ 135 (306)
.+|+|+| .|-+|+++.++|. .+ ..++.......... ......+. .+. ..+. ....++ ++.+.++|+|.+
T Consensus 166 ktvGIiG-~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L-~ell~~sDiV~l 242 (386)
T PLN02306 166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSM-EEVLREADVISL 242 (386)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCH-HHHHhhCCEEEE
Confidence 6899999 9999999999985 55 45665543211110 00000010 000 0000 001112 233578999999
Q ss_pred cCCcc-chH-----HHHHhcCCCCeEEECCc
Q 021865 136 CLPHG-TTQ-----EIIKGLPKSLKIVDLSA 160 (306)
Q Consensus 136 alp~~-~s~-----~~~~~l~~g~~VIDlSa 160 (306)
++|-. .+. +....+..|..+|..+-
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aR 273 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASR 273 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCC
Confidence 99844 333 33345577889998773
No 388
>PRK07024 short chain dehydrogenase; Provisional
Probab=85.10 E-value=1.6 Score=39.46 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+++|.|.||||.+|.++++.|+++ ..+++.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~-G~~v~~~~ 33 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ-GATLGLVA 33 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEe
Confidence 468999999999999999999976 44666654
No 389
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.06 E-value=1.6 Score=39.09 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=25.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.|.|.||||.+|.+|++.|.++. .+++.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG-FDLAIND 33 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 468999999999999999999764 4666654
No 390
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.95 E-value=3.3 Score=41.35 Aligned_cols=85 Identities=12% Similarity=0.176 Sum_probs=51.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch-
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s- 142 (306)
.+|+|+| .|-+|+++.+.+..+ ..++.... +. ..... .... ....+ ++.++.+|+|.+++|-...
T Consensus 152 ktvGIiG-~G~IG~~vA~~~~~f-Gm~V~~~d-~~-~~~~~-------~~~~--~~~~l-~ell~~sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVG-YGHIGTQLSVLAESL-GMRVYFYD-IE-DKLPL-------GNAR--QVGSL-EELLAQSDVVSLHVPETPST 217 (409)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEC-CC-ccccc-------CCce--ecCCH-HHHHhhCCEEEEcCCCChHH
Confidence 6899999 799999999999865 34555543 21 10000 0000 01112 2334789999999995443
Q ss_pred H-----HHHHhcCCCCeEEECCccc
Q 021865 143 Q-----EIIKGLPKSLKIVDLSADF 162 (306)
Q Consensus 143 ~-----~~~~~l~~g~~VIDlSadf 162 (306)
. +....+..|..+|..+---
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCc
Confidence 3 3334456788888877433
No 391
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=84.65 E-value=1.4 Score=42.48 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=28.3
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..+.||+|+||.|-+||-|--||-..|.+.-..+.
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLY 60 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALY 60 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccceeeee
Confidence 34689999999999999999888888888544443
No 392
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.60 E-value=1.8 Score=39.55 Aligned_cols=31 Identities=19% Similarity=-0.034 Sum_probs=25.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..+.|.||||.+|..+++.|.++ ..+++.+.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~-G~~V~~~~ 34 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKK-GYLVIATM 34 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhC-CCEEEEEe
Confidence 46899999999999999999876 45666664
No 393
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.56 E-value=2.1 Score=40.27 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=52.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc-eEEEEeccccCCccccccc--CC-cccCCCccccccCcccCCCCCEEEecCCc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVF--PH-LISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~aGk~l~~~~--p~-l~~~~~~~~~~~~~~~~~~~DvVF~alp~ 139 (306)
.+|.|.||+|-+|..+++++... .. ++...+++....+.+.+.+ .+ +...+....+.+....-.++|+||-|.+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 57999999999999999876543 44 5655544322111111000 00 00000000001100000368999999987
Q ss_pred cchHHHHHhcCCCCeEEECC
Q 021865 140 GTTQEIIKGLPKSLKIVDLS 159 (306)
Q Consensus 140 ~~s~~~~~~l~~g~~VIDlS 159 (306)
....+....+..+.++|+++
T Consensus 235 ~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHHHHHHHhccCCEEEEEe
Confidence 65566667777888888865
No 394
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.55 E-value=2.3 Score=37.59 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=52.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccC-C-cccCCCccccccCcccCCCCCEEEecCCc-
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP-H-LISQDLPTMVAVKDADFSNVDAVFCCLPH- 139 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p-~-l~~~~~~~~~~~~~~~~~~~DvVF~alp~- 139 (306)
..+|.|.|++| +|+.+++++.... .++..+.++...-+.+.+... + +...+......+....-..+|++|.|.+.
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 35799999999 9999999877544 566555433211111111000 0 00000000000000011468999999987
Q ss_pred cchHHHHHhcCCCCeEEECCcc
Q 021865 140 GTTQEIIKGLPKSLKIVDLSAD 161 (306)
Q Consensus 140 ~~s~~~~~~l~~g~~VIDlSad 161 (306)
.........+..+.++|+++..
T Consensus 213 ~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 213 ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred HHHHHHHHhcccCCEEEEEccC
Confidence 4445566677777788887653
No 395
>PRK12827 short chain dehydrogenase; Provisional
Probab=84.04 E-value=1.2 Score=39.48 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=25.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+++.|.||||.+|++|++.|.++. .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 3689999999999999999999764 3555543
No 396
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.96 E-value=3.5 Score=39.54 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=49.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCC--cc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP--HG 140 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp--~~ 140 (306)
..+|.|+|.+..+|.=|..+|.+. +..++..-++. .+ + .+...++|+||.|.+ +-
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~-~atVtv~hs~T---------------~~---l----~~~~~~ADIvi~avG~p~~ 215 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA-GCTVTVCHRFT---------------KN---L----RHHVRNADLLVVAVGKPGF 215 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-CCeEEEEECCC---------------CC---H----HHHHhhCCEEEEcCCCccc
Confidence 368999999999999999999854 34444443221 11 1 122357999999994 33
Q ss_pred chHHHHHhcCCCCeEEECCccc
Q 021865 141 TTQEIIKGLPKSLKIVDLSADF 162 (306)
Q Consensus 141 ~s~~~~~~l~~g~~VIDlSadf 162 (306)
+..+ .+..|..|||.+-.+
T Consensus 216 v~~~---~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPGE---WIKPGAIVIDVGINR 234 (285)
T ss_pred ccHH---HcCCCcEEEEccccc
Confidence 2222 247799999987554
No 397
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.85 E-value=2.6 Score=40.41 Aligned_cols=76 Identities=12% Similarity=0.220 Sum_probs=51.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcC---CCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~H---P~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
.+|.|||.|..+|.=|..+|.+. -+..++...++. .+ + .+....+|+|+.|.+.-
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------------~~---l----~~~~~~ADIVI~AvG~p 215 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------------PD---L----AEECREADFLFVAIGRP 215 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------------hh---H----HHHHHhCCEEEEecCCC
Confidence 68999999999999999999872 445555554321 01 1 12235799999999542
Q ss_pred chHHHHHh-cCCCCeEEECCcccc
Q 021865 141 TTQEIIKG-LPKSLKIVDLSADFR 163 (306)
Q Consensus 141 ~s~~~~~~-l~~g~~VIDlSadfR 163 (306)
. -+-+. +..|..|||.+-++-
T Consensus 216 ~--li~~~~vk~GavVIDVGi~~~ 237 (286)
T PRK14184 216 R--FVTADMVKPGAVVVDVGINRT 237 (286)
T ss_pred C--cCCHHHcCCCCEEEEeeeecc
Confidence 1 11122 377999999887663
No 398
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.82 E-value=1.6 Score=42.46 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=25.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
|+|.|.|+.||+|+..++.|++ ...+++.+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vvV~ 30 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVVVL 30 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHH-CCCeEEEE
Confidence 5799999999999999999987 45556555
No 399
>PRK09134 short chain dehydrogenase; Provisional
Probab=83.81 E-value=2.3 Score=38.40 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=26.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
.+++.|.||+|.+|.++++.|.++. .+++.+..
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~ 41 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHG-FDVAVHYN 41 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 3579999999999999999998765 45655543
No 400
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=83.74 E-value=1.1 Score=46.59 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=26.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||+|-+|.||++.+++.---+++.+.
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~p~~i~l~~ 282 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFNPKEIILFS 282 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhcCCCEEEEec
Confidence 57999999999999999999987444566664
No 401
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.59 E-value=1.6 Score=43.39 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=30.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEecccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK 99 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~ 99 (306)
.+|.+-|||||.|.-|++-|++..+.++..++..++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s 36 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQS 36 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCC
Confidence 368999999999999999999877799988875444
No 402
>PRK08251 short chain dehydrogenase; Provisional
Probab=83.53 E-value=2.1 Score=38.16 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=25.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|+++++.|+++. .+++.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g-~~v~~~~ 33 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKG-RDLALCA 33 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC-CEEEEEe
Confidence 579999999999999999999876 4665554
No 403
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=83.44 E-value=2.3 Score=39.20 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=52.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccC-C-cccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP-H-LISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p-~-l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
.++.|.||+|.+|+.+++++... ..++..+++....-+.+.+... . +...+ ..+.+ ..+.++|+||.|.+...
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~d~v~~~~g~~~ 238 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKAL-GARVIAVTRSPEKLKILKELGADYVIDGSK--FSEDV--KKLGGADVVIELVGSPT 238 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHcCCcEEEecHH--HHHHH--HhccCCCEEEECCChHH
Confidence 57999999999999999998765 4556555432211111110000 0 00000 00111 11236899999988665
Q ss_pred hHHHHHhcCCCCeEEECCc
Q 021865 142 TQEIIKGLPKSLKIVDLSA 160 (306)
Q Consensus 142 s~~~~~~l~~g~~VIDlSa 160 (306)
.......+..+.++|.++.
T Consensus 239 ~~~~~~~~~~~g~~v~~g~ 257 (332)
T cd08259 239 IEESLRSLNKGGRLVLIGN 257 (332)
T ss_pred HHHHHHHhhcCCEEEEEcC
Confidence 5556666666667777654
No 404
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.28 E-value=2.1 Score=38.91 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=27.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
..++.|.||||.+|.++++.|..+. .+++.+..
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G-~~Vi~~~r 42 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAG-ADVLIAAR 42 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 4679999999999999999999875 47766643
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=83.20 E-value=2.3 Score=38.68 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=27.7
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..+|.|.||||.+|.++++.|+++...++..+.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~ 40 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAA 40 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999999988656776654
No 406
>PRK07074 short chain dehydrogenase; Provisional
Probab=83.02 E-value=2 Score=38.61 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|.++++.|.++ ..+++.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~-g~~v~~~~ 33 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA-GDRVLALD 33 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC-CCEEEEEe
Confidence 47999999999999999999875 35666654
No 407
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.86 E-value=3.4 Score=36.22 Aligned_cols=93 Identities=23% Similarity=0.381 Sum_probs=50.8
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccc--------------cCCc--------ccccccCCcccCCCcccccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--------------KAGQ--------SIGSVFPHLISQDLPTMVAV 122 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~--------------~aGk--------~l~~~~p~l~~~~~~~~~~~ 122 (306)
||+|+|+ |-+|.++++.|.....-+++.+-.+. ..|+ .+.+..|....... ...+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~--~~~~ 77 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAI--NIKI 77 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEE--Eeec
Confidence 5899995 77899999999865444444443211 1222 11222333221000 0111
Q ss_pred Cc----ccCCCCCEEEecCCccchHH-HHHhc-CC-CCeEEECCc
Q 021865 123 KD----ADFSNVDAVFCCLPHGTTQE-IIKGL-PK-SLKIVDLSA 160 (306)
Q Consensus 123 ~~----~~~~~~DvVF~alp~~~s~~-~~~~l-~~-g~~VIDlSa 160 (306)
+. +.+.++|+||.|+.+-.++. +...+ .. ++.+|--++
T Consensus 78 ~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~ 122 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASG 122 (174)
T ss_pred ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEeh
Confidence 11 22468999999988777765 33444 44 777775443
No 408
>PRK09186 flagellin modification protein A; Provisional
Probab=82.77 E-value=2.3 Score=37.99 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=26.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++|.|.||||.+|.++++.|.++- .+++.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g-~~v~~~~ 35 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAG-GIVIAAD 35 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 3679999999999999999998753 4565553
No 409
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.69 E-value=2 Score=41.07 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=50.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|.+..+|.-|..+|.+.. ..++...++. .+ + .+...++|+|+.|.|..
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~-atVtv~hs~t---------------~~---L----~~~~~~ADIvI~Avgk~--- 206 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNAD-ATVTICHSKT---------------EN---L----KAELRQADILVSAAGKA--- 206 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCC-CeeEEEecCh---------------hH---H----HHHHhhCCEEEECCCcc---
Confidence 689999999999999999997643 3444443321 01 1 12236799999999632
Q ss_pred HHH-Hh-cCCCCeEEECCccc
Q 021865 144 EII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ +. +..|..|||.+-++
T Consensus 207 ~lv~~~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 207 GFITPDMVKPGATVIDVGINQ 227 (279)
T ss_pred cccCHHHcCCCcEEEEeeccc
Confidence 333 22 47899999999877
No 410
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=82.64 E-value=2.1 Score=38.02 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=25.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.++.|.||||.+|.++++.|+++- .++..+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g-~~v~~~~ 34 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEG-AKVAVFD 34 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEec
Confidence 4679999999999999999999763 3555554
No 411
>PRK06482 short chain dehydrogenase; Provisional
Probab=82.55 E-value=2.3 Score=38.74 Aligned_cols=31 Identities=16% Similarity=0.011 Sum_probs=24.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+++.|.||||++|..+++.|++.- .++..+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g-~~v~~~~ 33 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARG-DRVAATV 33 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998653 3555544
No 412
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.34 E-value=3.9 Score=37.45 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=51.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCc--eEEEEecccc---CCcc--cccccCCcccCC-CccccccC-cccCCCCCEEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYF--GIKLMTADRK---AGQS--IGSVFPHLISQD-LPTMVAVK-DADFSNVDAVF 134 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~--el~~l~S~~~---aGk~--l~~~~p~l~~~~-~~~~~~~~-~~~~~~~DvVF 134 (306)
.||.|+|| |-+|..+.+.|.+.--- ++..+ .|+. .++. +.+....+.... .... ..+ .+.+.+.|+++
T Consensus 26 ~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~iv-dr~gl~~~~r~~~L~~~~~~la~~~~~~~~-~~~l~~~l~~~dvlI 102 (226)
T cd05311 26 VKIVINGA-GAAGIAIARLLLAAGAKPENIVVV-DSKGVIYEGREDDLNPDKNEIAKETNPEKT-GGTLKEALKGADVFI 102 (226)
T ss_pred CEEEEECc-hHHHHHHHHHHHHcCcCcceEEEE-eCCCccccccchhhhHHHHHHHHHhccCcc-cCCHHHHHhcCCEEE
Confidence 58999997 99999999999865322 34343 3331 1111 111000010000 0000 011 13345689999
Q ss_pred ecCCccch-HHHHHhcCCCCeEEECC
Q 021865 135 CCLPHGTT-QEIIKGLPKSLKIVDLS 159 (306)
Q Consensus 135 ~alp~~~s-~~~~~~l~~g~~VIDlS 159 (306)
.++|.+.- .+.++.+.++..|+|+|
T Consensus 103 gaT~~G~~~~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 103 GVSRPGVVKKEMIKKMAKDPIVFALA 128 (226)
T ss_pred eCCCCCCCCHHHHHhhCCCCEEEEeC
Confidence 99986654 46667776777888988
No 413
>PRK12742 oxidoreductase; Provisional
Probab=82.32 E-value=2.5 Score=37.25 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=24.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
.+|.|.||+|.+|.++++.|.++- .+++.+
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G-~~v~~~ 36 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDG-ANVRFT 36 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEe
Confidence 579999999999999999998753 355544
No 414
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=82.29 E-value=1.6 Score=41.40 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=38.4
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEecccc--CCcccccccCCcccCCCccccc-cCcccCCCCCEEEecCC
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~--aGk~l~~~~p~l~~~~~~~~~~-~~~~~~~~~DvVF~alp 138 (306)
|+|||| |++|..+...|+.+...+++++--... .|+.+...+..-.......+.. .+.+++.++|+||.+.+
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAG 75 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecC
Confidence 689998 999999999888654337776643221 1111111111000000011211 12345688999999874
No 415
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=82.28 E-value=4.8 Score=39.08 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=50.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCc-cc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH-GT 141 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~-~~ 141 (306)
-.+||||| .|-+|+++.+.|..+ .+++.... +...+..... .... ....+ ++-+..+|+|.+.+|- ..
T Consensus 142 gkTvGIiG-~G~IG~~va~~l~af-gm~v~~~d--~~~~~~~~~~---~~~~---~~~~L-d~lL~~sDiv~lh~PlT~e 210 (324)
T COG0111 142 GKTVGIIG-LGRIGRAVAKRLKAF-GMKVIGYD--PYSPRERAGV---DGVV---GVDSL-DELLAEADILTLHLPLTPE 210 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhC-CCeEEEEC--CCCchhhhcc---ccce---ecccH-HHHHhhCCEEEEcCCCCcc
Confidence 36899999 899999999999876 34454443 2121111100 0000 01112 2334789999999993 33
Q ss_pred hHHH-----HHhcCCCCeEEECCc
Q 021865 142 TQEI-----IKGLPKSLKIVDLSA 160 (306)
Q Consensus 142 s~~~-----~~~l~~g~~VIDlSa 160 (306)
+..+ ..++..|..+|-.+-
T Consensus 211 T~g~i~~~~~a~MK~gailIN~aR 234 (324)
T COG0111 211 TRGLINAEELAKMKPGAILINAAR 234 (324)
T ss_pred hhcccCHHHHhhCCCCeEEEECCC
Confidence 4333 344567887775553
No 416
>PRK06101 short chain dehydrogenase; Provisional
Probab=82.17 E-value=2.4 Score=37.94 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=25.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
|.++.|.||||.+|.++.+.|+++. .++..+.
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G-~~V~~~~ 32 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQG-WQVIACG 32 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCC-CEEEEEE
Confidence 3579999999999999999999763 4665554
No 417
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=82.15 E-value=0.65 Score=46.00 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=24.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhc---CCCceEEEE
Q 021865 63 QVRIGLLGASGYTGAEIVRLLAN---HPYFGIKLM 94 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~---HP~~el~~l 94 (306)
.+.+.|.|||||+|+-+++.+.+ .+...+...
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavA 39 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVA 39 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEEEe
Confidence 46799999999999999998875 444444333
No 418
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.03 E-value=2.4 Score=40.66 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=49.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|.|..+|.=|..+|.+. +..++..-|+. .+ + .+...++|+|+.|.+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~-~aTVtichs~T---------------~~---l----~~~~~~ADIvIsAvGkp--- 209 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE-DATVTLAHSKT---------------QD---L----PAVTRRADVLVVAVGRP--- 209 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEeCCCC---------------CC---H----HHHHhhCCEEEEecCCc---
Confidence 58999999999999999999854 34444443221 11 1 12235799999999653
Q ss_pred HHH-Hh-cCCCCeEEECCccc
Q 021865 144 EII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ +. +..|..|||..-.+
T Consensus 210 ~~i~~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 210 HLITPEMVRPGAVVVDVGINR 230 (287)
T ss_pred CccCHHHcCCCCEEEEccCcc
Confidence 233 22 47899999987665
No 419
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.95 E-value=1.3 Score=39.93 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=25.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|.++.+.|+++. .+++.+.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G-~~vv~~~ 38 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREG-AAVALAD 38 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999999775 4565554
No 420
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.82 E-value=2.4 Score=37.94 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=25.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||+|.+|..+++.|.++. .+++.+.
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G-~~Vi~~~ 40 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAG-AKVVLAS 40 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 689999999999999999999764 4665554
No 421
>PRK05717 oxidoreductase; Validated
Probab=81.77 E-value=2.6 Score=37.89 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=25.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..++.|.||+|.+|.++++.|.++- .+++.+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~~ 41 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEG-WQVVLAD 41 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC-CEEEEEc
Confidence 3579999999999999999998763 4665553
No 422
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=81.60 E-value=1.5 Score=41.50 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=39.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCccc-CCCccccccCcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS-QDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~-~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
.+|.|+||-| +|+.++..|....--++..+-......+.+.+.+.+... ......+++ .+.+.++|+|+.|+|-|.
T Consensus 128 k~vlIlGaGG-aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~-~~~~~~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGG-AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDL-AAALAAADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccch-HhhhCCCCEEEECCcCCC
Confidence 5899999754 788888888765444555553221211222221110000 000001111 123467999999998775
No 423
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.59 E-value=2.2 Score=40.93 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=49.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|.+..+|.-+..+|.+. ...++..-++. .+ + .+...++|+|+.|.+...
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~-gAtVtv~hs~t---------------~~---l----~~~~~~ADIvV~AvG~p~-- 212 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA-GASVSVCHILT---------------KD---L----SFYTQNADIVCVGVGKPD-- 212 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCEEEEEeCCc---------------HH---H----HHHHHhCCEEEEecCCCC--
Confidence 68999999999999999999864 34444442211 11 1 122367999999996432
Q ss_pred HHHHh-cCCCCeEEECCccc
Q 021865 144 EIIKG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~~~-l~~g~~VIDlSadf 162 (306)
-+-+. +..|..|||.+-++
T Consensus 213 ~i~~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 213 LIKASMVKKGAVVVDIGINR 232 (285)
T ss_pred cCCHHHcCCCcEEEEeeccc
Confidence 12122 37799999988766
No 424
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=81.57 E-value=2.3 Score=40.04 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=28.4
Q ss_pred ccEEEEEccccHHHHHHHHHHhc--CCCceEEEEec
Q 021865 63 QVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTA 96 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~--HP~~el~~l~S 96 (306)
|+||.|.|.||++|..+.+.+.. .++-+.++.++
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s 36 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS 36 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc
Confidence 57999999999999999999984 55566777765
No 425
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.40 E-value=2.5 Score=37.60 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=25.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|.++++.|.++. .+++...
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G-~~vv~~~ 36 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREG-ARVVVNY 36 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC-CeEEEEc
Confidence 579999999999999999998764 3555443
No 426
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.39 E-value=2.3 Score=40.25 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=23.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|+|| |=+|+.++..|.....-++..+.
T Consensus 127 k~vlI~GA-GGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 127 KKLTVIGA-GGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCCEEEEEe
Confidence 57999999 78889999988866544455553
No 427
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=81.38 E-value=2.5 Score=37.65 Aligned_cols=32 Identities=22% Similarity=-0.037 Sum_probs=26.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..+|.|.||+|.+|..+++.|.++- .+++.+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~ 36 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAG-ADIVGAG 36 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEc
Confidence 3679999999999999999999864 4665554
No 428
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=81.33 E-value=1.9 Score=39.29 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|+++++.|+++- .+++.+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~ 41 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAG-AKVAILD 41 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998764 3565554
No 429
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=81.28 E-value=1.6 Score=42.30 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=27.0
Q ss_pred CCCCCEEEecCCccchHHHHHhc--CCCCeEEECCcccccC
Q 021865 127 FSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVDLSADFRLR 165 (306)
Q Consensus 127 ~~~~DvVF~alp~~~s~~~~~~l--~~g~~VIDlSadfRl~ 165 (306)
++++|+||.|+.+-.++-+...+ ..++.+|+ +...++
T Consensus 106 i~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~--aalGfd 144 (307)
T cd01486 106 IKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN--AALGFD 144 (307)
T ss_pred HhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE--EEeccc
Confidence 47899999999988887655444 45778887 455554
No 430
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=81.28 E-value=2.9 Score=34.11 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=23.9
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
++.|.||||.+|.++++.|.++....+..+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~ 31 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLL 31 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEE
Confidence 588999999999999999987654444444
No 431
>PRK08643 acetoin reductase; Validated
Probab=81.17 E-value=2.6 Score=37.77 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=25.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|.++++.|+++- .+++.+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G-~~v~~~~ 33 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDG-FKVAIVD 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 468999999999999999999763 4665554
No 432
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=81.16 E-value=3.1 Score=38.65 Aligned_cols=96 Identities=13% Similarity=0.033 Sum_probs=53.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccccc--CCcccCCCccccccC-cccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF--PHLISQDLPTMVAVK-DADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~--p~l~~~~~~~~~~~~-~~~~~~~DvVF~alp~~ 140 (306)
.+|.|.||+|-+|+.++++.... ..++..+++.....+.+.+.- ..+...+......+. ... .++|+||-|.+..
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~-~~vd~v~~~~g~~ 218 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLAKLA-GCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYP-KGVDVVYESVGGE 218 (329)
T ss_pred CEEEEEeCccHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcC-CCCeEEEECCcHH
Confidence 57999999999999998877765 455555543221111111100 000000000000010 011 3689999998865
Q ss_pred chHHHHHhcCCCCeEEECCcc
Q 021865 141 TTQEIIKGLPKSLKIVDLSAD 161 (306)
Q Consensus 141 ~s~~~~~~l~~g~~VIDlSad 161 (306)
...+....+..+.++|+++..
T Consensus 219 ~~~~~~~~l~~~g~~v~~g~~ 239 (329)
T cd08250 219 MFDTCVDNLALKGRLIVIGFI 239 (329)
T ss_pred HHHHHHHHhccCCeEEEEecc
Confidence 555566777777888887654
No 433
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=81.01 E-value=5.6 Score=36.59 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=26.9
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.+||+|.| .|-+|+.++++|.+. ..+++.++
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~-g~~vv~v~ 61 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEA-GAKVVAVS 61 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEE
Confidence 458999999 799999999999876 67777665
No 434
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.95 E-value=3.2 Score=36.84 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=25.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.|+||.+|..|++.|+++.. +++.+.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~ 38 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGV-NVGLLA 38 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 5799999999999999999987644 666654
No 435
>PRK08328 hypothetical protein; Provisional
Probab=80.89 E-value=3.6 Score=37.74 Aligned_cols=93 Identities=16% Similarity=0.271 Sum_probs=51.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe---------------ccccCCcc---------cccccCCcccCCCcc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT---------------ADRKAGQS---------IGSVFPHLISQDLPT 118 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~---------------S~~~aGk~---------l~~~~p~l~~~~~~~ 118 (306)
..||.|+|+ |-+|.++++.|...-.-+++.+- .....|+. +.+..|.+......
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~- 104 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV- 104 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe-
Confidence 468999995 55788999988754333333331 22334431 22333443211000
Q ss_pred ccccCc----ccCCCCCEEEecCCccchHHHHHhc--CCCCeEEEC
Q 021865 119 MVAVKD----ADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVDL 158 (306)
Q Consensus 119 ~~~~~~----~~~~~~DvVF~alp~~~s~~~~~~l--~~g~~VIDl 158 (306)
..+++ +.+++.|+||.|+.+-.++.+...+ ..++.+|.-
T Consensus 105 -~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 105 -GRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred -ccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 01111 1246899999999886666555432 568888863
No 436
>PRK07775 short chain dehydrogenase; Provisional
Probab=80.88 E-value=2.9 Score=38.36 Aligned_cols=32 Identities=28% Similarity=0.181 Sum_probs=26.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+..+.|.||+|.+|..+++.|.++. .++..+.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G-~~V~~~~ 41 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAG-FPVALGA 41 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 3579999999999999999999875 4555554
No 437
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.74 E-value=1.8 Score=42.24 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=54.8
Q ss_pred cccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEecc---------------ccCCc----------ccccccCCccc
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ----------SIGSVFPHLIS 113 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~---------------~~aGk----------~l~~~~p~l~~ 113 (306)
+.-+..||.|+|+ |-+|.+++..|...-.-++..+-.. ...|+ .+.+..|.+..
T Consensus 20 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 20 QKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 3334578999997 8899999999985433344444321 11221 12223333321
Q ss_pred CCCccccccCc----ccCCCCCEEEecCCccchHHHHHhc--CCCCeEEECC
Q 021865 114 QDLPTMVAVKD----ADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVDLS 159 (306)
Q Consensus 114 ~~~~~~~~~~~----~~~~~~DvVF~alp~~~s~~~~~~l--~~g~~VIDlS 159 (306)
... ...+++ +.+.++|+|+.|+.+-.+..++-.+ ..++.+|.-+
T Consensus 99 ~~~--~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 99 EAI--VQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred EEE--eccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 000 011111 2246799999999988776655432 4577777543
No 438
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.74 E-value=3.1 Score=36.82 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=25.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|..|++.|.++- .+++.+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G-~~v~~~~ 38 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAG-ATVAFND 38 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcC-CEEEEEe
Confidence 679999999999999999998653 4565553
No 439
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.68 E-value=2.2 Score=38.83 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|.++.+.|.+.- .++..+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~ 37 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAG-ARVAIVD 37 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999999753 3555553
No 440
>PRK06194 hypothetical protein; Provisional
Probab=80.59 E-value=2.9 Score=38.21 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|.+|++.|+++. .+++.+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G-~~V~~~~ 37 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALG-MKLVLAD 37 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999999764 4565553
No 441
>PRK12743 oxidoreductase; Provisional
Probab=80.45 E-value=2.9 Score=37.68 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=25.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.+|.|.||||.+|.++++.|+++- .++..+.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G-~~V~~~~ 33 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG-FDIGITW 33 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 3579999999999999999999863 4565554
No 442
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.45 E-value=3 Score=39.98 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=48.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|.+..+|.=|..+|.+. +..++..-++. .+ + .+...++|+||.|.+.- .
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~-~atVtv~hs~T---------------~~---l----~~~~~~ADIvv~AvG~p--~ 219 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR-NATVSVCHVFT---------------DD---L----KKYTLDADILVVATGVK--H 219 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC-CCEEEEEeccC---------------CC---H----HHHHhhCCEEEEccCCc--c
Confidence 68999999999999999999864 34444443211 11 1 11225799999988542 1
Q ss_pred HHHH-hcCCCCeEEECCccc
Q 021865 144 EIIK-GLPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~~-~l~~g~~VIDlSadf 162 (306)
-+-+ .+..|..|||.+-.+
T Consensus 220 ~i~~~~vk~gavVIDvGin~ 239 (287)
T PRK14176 220 LIKADMVKEGAVIFDVGITK 239 (287)
T ss_pred ccCHHHcCCCcEEEEecccc
Confidence 1212 247799999988764
No 443
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.37 E-value=3 Score=42.49 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=46.3
Q ss_pred cccCccEEEEEccccHHHHHHHHHHhc------CCCceEEEEeccccCCcc----c--cc-ccCCcccCCCccccccCcc
Q 021865 59 KSEKQVRIGLLGASGYTGAEIVRLLAN------HPYFGIKLMTADRKAGQS----I--GS-VFPHLISQDLPTMVAVKDA 125 (306)
Q Consensus 59 ~~~~~~kVaIiGATGyvG~ELlrlL~~------HP~~el~~l~S~~~aGk~----l--~~-~~p~l~~~~~~~~~~~~~~ 125 (306)
++.+.+||+|.||+|.+|-.|+-.|++ +..+.|+++--.....+. + .+ .+|-+.. . .+..-+.+
T Consensus 119 ~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~--v-~i~~~~~e 195 (452)
T cd05295 119 SKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRG--I-SVTTDLDV 195 (452)
T ss_pred cCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCC--c-EEEECCHH
Confidence 344458999999999999999999985 344556666321122221 1 11 1232221 1 11111245
Q ss_pred cCCCCCEEEecCCc
Q 021865 126 DFSNVDAVFCCLPH 139 (306)
Q Consensus 126 ~~~~~DvVF~alp~ 139 (306)
++.++|+||++.+.
T Consensus 196 a~~daDvvIitag~ 209 (452)
T cd05295 196 AFKDAHVIVLLDDF 209 (452)
T ss_pred HhCCCCEEEECCCC
Confidence 67899999998764
No 444
>PRK09072 short chain dehydrogenase; Provisional
Probab=80.14 E-value=3.2 Score=37.56 Aligned_cols=31 Identities=32% Similarity=0.317 Sum_probs=25.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|.++++.|+++ ..++..+.
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~-G~~V~~~~ 36 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAA-GARLLLVG 36 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEE
Confidence 57999999999999999999875 35666554
No 445
>PRK07577 short chain dehydrogenase; Provisional
Probab=80.04 E-value=3.4 Score=36.36 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=25.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+++.|.|+||.+|..+.+.|.++- .+++.+.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLG-HQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998764 5666654
No 446
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.02 E-value=3.6 Score=34.17 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.1
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR 98 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~ 98 (306)
.+.|+||+|-+|.++.+.|.++ ....+.+++|+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~ 34 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR-GARVVILTSRS 34 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESS
T ss_pred EEEEECCCCHHHHHHHHHHHhc-CceEEEEeeec
Confidence 5899999999999999999998 44444554544
No 447
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.94 E-value=2.4 Score=39.25 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=53.3
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEE---------------eccccCCcc--------cccccCCcccCCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM---------------TADRKAGQS--------IGSVFPHLISQDLPT 118 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l---------------~S~~~aGk~--------l~~~~p~l~~~~~~~ 118 (306)
+..||.|+|+ |-+|.++++.|..--.-+++.+ ......|++ +.+..|++......
T Consensus 23 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~- 100 (240)
T TIGR02355 23 KASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN- 100 (240)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe-
Confidence 3468999995 6678888888874322222222 222344432 23345544321110
Q ss_pred ccccCc----ccCCCCCEEEecCCccchHHHHHh-c-CCCCeEEECC
Q 021865 119 MVAVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (306)
Q Consensus 119 ~~~~~~----~~~~~~DvVF~alp~~~s~~~~~~-l-~~g~~VIDlS 159 (306)
..++. +.+.+.|+||.|+.+-.++.++.. . ..++.+|.-+
T Consensus 101 -~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 101 -AKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred -ccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 11111 224689999999998777665543 3 5688888743
No 448
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=79.86 E-value=3.1 Score=37.36 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||+|.+|.++++.|+++ ..+++.+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~-g~~vi~~~ 33 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEE-GYRVAVAD 33 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEE
Confidence 46999999999999999999977 45666654
No 449
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.83 E-value=3 Score=40.22 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=49.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|||.|..+|.=|..+|.++ +..++..-|+. .+ + .+...++|+|+.|.+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~-~atVtv~hs~T---------------~~---l----~~~~~~ADIvIsAvGkp--- 212 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA-NATVTIAHSRT---------------QD---L----ASITREADILVAAAGRP--- 212 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC-CCEEEEeCCCC---------------CC---H----HHHHhhCCEEEEccCCc---
Confidence 68999999999999999999865 34444442211 11 1 11225799999999743
Q ss_pred HHH-Hh-cCCCCeEEECCccc
Q 021865 144 EII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ +. +..|..|||.+-.+
T Consensus 213 ~~i~~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 213 NLIGAEMVKPGAVVVDVGIHR 233 (297)
T ss_pred CccCHHHcCCCCEEEEecccc
Confidence 233 22 47799999987766
No 450
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=79.73 E-value=3.8 Score=40.27 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=53.4
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEecc---------------ccCCcc--------cccccCCcccCCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQS--------IGSVFPHLISQDLPT 118 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~---------------~~aGk~--------l~~~~p~l~~~~~~~ 118 (306)
+..||.|+|+ |-+|.++++.|...-.-++..+-.. ...|+. +.+.+|.+......
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~- 211 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ- 211 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe-
Confidence 4468999996 6699999999986554445444321 122321 22233433210000
Q ss_pred ccccCc----ccCCCCCEEEecCCccchHHHHHh-c-CCCCeEEEC
Q 021865 119 MVAVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDL 158 (306)
Q Consensus 119 ~~~~~~----~~~~~~DvVF~alp~~~s~~~~~~-l-~~g~~VIDl 158 (306)
..++. +.+.++|+|+.|+.+-.++.++.. . ..++.+|.-
T Consensus 212 -~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 212 -ERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred -ccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 11111 123679999999998777665543 3 557888864
No 451
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.66 E-value=5 Score=39.54 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=50.5
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCC--CceEEEEeccccCCccccc--ccCCcccCCCccccccCcccCCCCCEEEec
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKAGQSIGS--VFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP--~~el~~l~S~~~aGk~l~~--~~p~l~~~~~~~~~~~~~~~~~~~DvVF~a 136 (306)
...+|.||+| -|.+++.+++-|..-| +..++.++++ +.-+..++ .|..=...-+...+++- .+ ..+|+|...
T Consensus 4 s~~ir~Gi~g-~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~~~k~y~syEeLa-kd-~~vDvVyi~ 79 (351)
T KOG2741|consen 4 SATIRWGIVG-AGRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIPNPKAYGSYEELA-KD-PEVDVVYIS 79 (351)
T ss_pred CceeEEEEee-hhHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHHHhcCCCCCccccCHHHHh-cC-CCcCEEEeC
Confidence 4558999999 5889999999999888 7788888876 22222221 11100000011122221 11 468999999
Q ss_pred CCccchHHHHH
Q 021865 137 LPHGTTQEIIK 147 (306)
Q Consensus 137 lp~~~s~~~~~ 147 (306)
+|+..-.+++.
T Consensus 80 ~~~~qH~evv~ 90 (351)
T KOG2741|consen 80 TPNPQHYEVVM 90 (351)
T ss_pred CCCccHHHHHH
Confidence 99877666663
No 452
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=79.56 E-value=6.4 Score=37.33 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=54.3
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEecc---------------ccCCc--------ccccccCCcccCCCccc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTM 119 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~---------------~~aGk--------~l~~~~p~l~~~~~~~~ 119 (306)
..+|.|+| .|-+|.++++.|..--.-+++++-.+ ...|+ .+.+++|+........
T Consensus 30 ~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~- 107 (268)
T PRK15116 30 DAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD- 107 (268)
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec-
Confidence 36899999 67899999999985433333333211 11221 1223344432111100
Q ss_pred cccCc----ccC-CCCCEEEecCCccchHH-HHHhc-CCCCeEEECCccc-ccC
Q 021865 120 VAVKD----ADF-SNVDAVFCCLPHGTTQE-IIKGL-PKSLKIVDLSADF-RLR 165 (306)
Q Consensus 120 ~~~~~----~~~-~~~DvVF~alp~~~s~~-~~~~l-~~g~~VIDlSadf-Rl~ 165 (306)
.+++ +.+ .+.|+|+.|...-.+.. +.... ..++.+|...++. |++
T Consensus 108 -~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d 160 (268)
T PRK15116 108 -FITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID 160 (268)
T ss_pred -ccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 1111 112 36899999998755544 33444 5688888766654 443
No 453
>PRK06701 short chain dehydrogenase; Provisional
Probab=79.53 E-value=4.7 Score=37.59 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=26.0
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+++.|.||+|++|..+.+.|+++ ..++..+.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~-G~~V~l~~ 77 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKE-GADIAIVY 77 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEe
Confidence 367999999999999999999986 45665443
No 454
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.52 E-value=3.4 Score=36.72 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.2
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.++.|.||||.+|+.+++.|.++.. +++...
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~ 37 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNA 37 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 36899999999999999999986543 554444
No 455
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=79.51 E-value=2.9 Score=40.84 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=55.6
Q ss_pred CccEEEEEccccHHHHHHHHHHh-cCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~-~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
....++||| +|..+.--++.+. -.|--++.....+....+.+........+.+....... ++..+++|+|+.|+|+.
T Consensus 129 da~~laiIG-aG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~-~~av~~aDiIvt~T~s~ 206 (330)
T COG2423 129 DASTLAIIG-AGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSA-EEAVEGADIVVTATPST 206 (330)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCH-HHHhhcCCEEEEecCCC
Confidence 346799999 5666666666555 46655666554333333333211111111111111111 34457899999999987
Q ss_pred chHHHHH--hcCCCCeEEECCcccccC
Q 021865 141 TTQEIIK--GLPKSLKIVDLSADFRLR 165 (306)
Q Consensus 141 ~s~~~~~--~l~~g~~VIDlSadfRl~ 165 (306)
. .++. .+..|..|.-.++|.+-+
T Consensus 207 ~--Pil~~~~l~~G~hI~aiGad~p~k 231 (330)
T COG2423 207 E--PVLKAEWLKPGTHINAIGADAPGK 231 (330)
T ss_pred C--CeecHhhcCCCcEEEecCCCCccc
Confidence 6 4442 347888888888876643
No 456
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.50 E-value=3.1 Score=40.03 Aligned_cols=74 Identities=14% Similarity=0.294 Sum_probs=50.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCC---CceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP---~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
.+|.|||.|..+|.=|..+|.++- +..++..-|+. .++ .+...++|+|+.|.+.-
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------~nl-------~~~~~~ADIvIsAvGkp 215 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------------KNL-------KKECLEADIIIAALGQP 215 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------------CCH-------HHHHhhCCEEEEccCCc
Confidence 689999999999999999998763 44454443221 111 11225799999999743
Q ss_pred chHHHH-Hh-cCCCCeEEECCccc
Q 021865 141 TTQEII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 141 ~s~~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ +. +..|..|||.+-.+
T Consensus 216 ---~~i~~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 216 ---EFVKADMVKEGAVVIDVGTTR 236 (293)
T ss_pred ---CccCHHHcCCCCEEEEecCcc
Confidence 223 22 47799999987655
No 457
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.43 E-value=3.1 Score=40.09 Aligned_cols=75 Identities=9% Similarity=0.254 Sum_probs=50.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcC-C--CceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANH-P--YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~H-P--~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
.+|.|||.|..+|.=|..+|.+. + +..++..-|+. .+ + .+...++|+|+.|.+..
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---------------~~---l----~~~~~~ADIvVsAvGkp 219 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---------------KN---L----ARHCQRADILIVAAGVP 219 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---------------cC---H----HHHHhhCCEEEEecCCc
Confidence 68999999999999999999864 2 44444442221 11 1 12235799999998542
Q ss_pred chHHHHHh-cCCCCeEEECCccc
Q 021865 141 TTQEIIKG-LPKSLKIVDLSADF 162 (306)
Q Consensus 141 ~s~~~~~~-l~~g~~VIDlSadf 162 (306)
.-+-+. +..|..|||.+-.+
T Consensus 220 --~~i~~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 220 --NLVKPEWIKPGATVIDVGVNR 240 (297)
T ss_pred --CccCHHHcCCCCEEEecCCCc
Confidence 222233 47799999987665
No 458
>PRK06199 ornithine cyclodeaminase; Validated
Probab=79.31 E-value=2.6 Score=41.80 Aligned_cols=91 Identities=15% Similarity=0.294 Sum_probs=52.0
Q ss_pred CccEEEEEccccHHHHHHHHHHhc-CCCceEEEEeccccCC-ccc----ccccCCcccCCCccccccCcccCCCCCEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSI----GSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~-HP~~el~~l~S~~~aG-k~l----~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~ 135 (306)
...+++|+| ||.-+..-++.+.. +|.++-+.+.+|.... +.+ .+.++.+. +....... ++...++|+|++
T Consensus 154 da~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~--~v~~~~s~-~eav~~ADIVvt 229 (379)
T PRK06199 154 DSKVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQIT--NVEVVDSI-EEVVRGSDIVTY 229 (379)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCc--eEEEeCCH-HHHHcCCCEEEE
Confidence 446899999 78888888887775 7877766766654322 111 11111110 11111111 344578999999
Q ss_pred cCCccc---h-HHHH--HhcCCCCeEE
Q 021865 136 CLPHGT---T-QEII--KGLPKSLKIV 156 (306)
Q Consensus 136 alp~~~---s-~~~~--~~l~~g~~VI 156 (306)
|++... | ..++ ..+..|..|+
T Consensus 230 aT~s~~~~~s~~Pv~~~~~lkpG~hv~ 256 (379)
T PRK06199 230 CNSGETGDPSTYPYVKREWVKPGAFLL 256 (379)
T ss_pred ccCCCCCCCCcCcEecHHHcCCCcEEe
Confidence 998644 1 1333 2346677665
No 459
>PRK05875 short chain dehydrogenase; Provisional
Probab=79.24 E-value=3.1 Score=37.81 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=26.1
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
..++.|.||||.+|..+.+.|.++. .++..+.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G-~~V~~~~ 38 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAG-AAVMIVG 38 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 3689999999999999999998764 3665554
No 460
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.16 E-value=3.4 Score=37.08 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=26.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEec
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S 96 (306)
..++.|.||+|.+|+.+++.|.++- .+++.+..
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G-~~v~~~~r 43 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAG-AHVLVNGR 43 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC-CeEEEEeC
Confidence 4689999999999999999998763 56666643
No 461
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.05 E-value=3.2 Score=39.79 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=49.6
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccch
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
-.+|.|+|.|..+|.=|..+|.+. +..++..-++. .+ + .+...++|+|+.|.+..-
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~-~atVt~chs~t---------------~~---l----~~~~~~ADIvI~AvG~p~- 213 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNE-NATVTYCHSKT---------------KN---L----AELTKQADILIVAVGKPK- 213 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-CCEEEEEeCCc---------------hh---H----HHHHHhCCEEEEecCCCC-
Confidence 368999999999999999999864 34444432211 11 1 122357999999996432
Q ss_pred HHHH-Hh-cCCCCeEEECCccc
Q 021865 143 QEII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 143 ~~~~-~~-l~~g~~VIDlSadf 162 (306)
++ +. +..|..|||.+-++
T Consensus 214 --~i~~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 214 --LITADMVKEGAVVIDVGVNR 233 (284)
T ss_pred --cCCHHHcCCCCEEEEeeccc
Confidence 33 22 47799999987665
No 462
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.95 E-value=3.5 Score=36.97 Aligned_cols=31 Identities=23% Similarity=0.072 Sum_probs=25.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||+|.+|.++++.|++. ..+++.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~ 41 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQA-GAEVILNG 41 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHc-CCEEEEEe
Confidence 57999999999999999999875 45666554
No 463
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.88 E-value=3.7 Score=39.59 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=49.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCC---CceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP---~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
.+|.|||.|..+|.=|..+|.++- +..++..-|+. .+ + .+...++|+|+.|.+.-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------~~---l----~~~~~~ADIvIsAvGkp 215 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------------DD---L----AAKTRRADIVVAAAGVP 215 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------------CC---H----HHHHhhCCEEEEccCCc
Confidence 689999999999999999998652 34444332211 11 1 11235799999998642
Q ss_pred chHHHHHh-cCCCCeEEECCccc
Q 021865 141 TTQEIIKG-LPKSLKIVDLSADF 162 (306)
Q Consensus 141 ~s~~~~~~-l~~g~~VIDlSadf 162 (306)
.-+-+. +..|..|||..-.+
T Consensus 216 --~~i~~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 --ELIDGSMLSEGATVIDVGINR 236 (297)
T ss_pred --CccCHHHcCCCCEEEEccccc
Confidence 122222 47799999977655
No 464
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=78.87 E-value=3.2 Score=40.37 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=32.9
Q ss_pred cEEEEEccccHHHHHHHHHHh-cCCCceEEEEeccccCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAGQS 103 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~-~HP~~el~~l~S~~~aGk~ 103 (306)
+++.|.|+.||+|+.++|.+. +||+.+++.+---..+|..
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~ 41 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNL 41 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCH
Confidence 578999999999999999776 6999878777655677763
No 465
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=78.79 E-value=8.8 Score=35.07 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=25.8
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
+.+||+|.| -|-+|+.+.++|.+. ...++.++
T Consensus 22 ~g~~vaIqG-fGnVG~~~a~~L~~~-G~~vV~vs 53 (217)
T cd05211 22 EGLTVAVQG-LGNVGWGLAKKLAEE-GGKVLAVS 53 (217)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEE
Confidence 447999999 799999999999976 45555654
No 466
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=78.77 E-value=3.7 Score=36.20 Aligned_cols=30 Identities=37% Similarity=0.365 Sum_probs=24.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
.++.|.||||.+|.++++.|.++-. .+...
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~-~v~~~ 36 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGA-IVGLH 36 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEE
Confidence 5899999999999999999986543 44333
No 467
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=78.76 E-value=4.2 Score=38.42 Aligned_cols=77 Identities=16% Similarity=0.051 Sum_probs=40.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCccc-CCCccccccCcccCCCCCEEEecCCccch
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS-QDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~-~~~~~~~~~~~~~~~~~DvVF~alp~~~s 142 (306)
.+|.|+|| |=+|+.++..|...---++..+-......+.+.+.+..... ..+...+++ ...+.++|+|+.|+|-+..
T Consensus 126 k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~-~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGG-LAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhh-hhcccCCCEEEECCCCCCC
Confidence 57999997 66677887777766544555553222222333322211100 000000111 1223578999999998753
No 468
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.74 E-value=12 Score=36.25 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=54.5
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCc----ccccccCCcc------cCCCcccccc-C-cccCCC
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ----SIGSVFPHLI------SQDLPTMVAV-K-DADFSN 129 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk----~l~~~~p~l~------~~~~~~~~~~-~-~~~~~~ 129 (306)
...||+||| +|..|..+...++.+ .+++.+.......-. .+....+.+. ......+... + ++.+++
T Consensus 6 ~i~~VaVIG-aG~MG~giA~~~a~a-G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 6 DIKTFAAIG-SGVIGSGWVARALAH-GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 346899999 599999999999865 566666543211111 1111111110 0000001111 1 233578
Q ss_pred CCEEEecCCccchHH--HHHh----cCCCCeEEECCcccccC
Q 021865 130 VDAVFCCLPHGTTQE--IIKG----LPKSLKIVDLSADFRLR 165 (306)
Q Consensus 130 ~DvVF~alp~~~s~~--~~~~----l~~g~~VIDlSadfRl~ 165 (306)
+|+|+-|.|.....+ +... +..++.+-.+++.+...
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s 125 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT 125 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHH
Confidence 999999999877632 3333 34566444566666543
No 469
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.66 E-value=4.6 Score=36.63 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=51.5
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCCceEEEEecc--------------ccCCcc--------cccccCCcccCCCccc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--------------RKAGQS--------IGSVFPHLISQDLPTM 119 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~--------------~~aGk~--------l~~~~p~l~~~~~~~~ 119 (306)
+..||+|+|+ |-+|.++++.|...-.-+++.+-.+ ...|+. +.+..|.+..... .
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~--~ 103 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAH--N 103 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEE--e
Confidence 3468999995 7789999999986544344443221 122221 1122232211000 0
Q ss_pred cccCc----ccCCCCCEEEecCCccchHHHH-Hhc-CC-CCeEEECCc
Q 021865 120 VAVKD----ADFSNVDAVFCCLPHGTTQEII-KGL-PK-SLKIVDLSA 160 (306)
Q Consensus 120 ~~~~~----~~~~~~DvVF~alp~~~s~~~~-~~l-~~-g~~VIDlSa 160 (306)
..++. +.+.++|+||.|+..-.++... ..+ .. +..+|--++
T Consensus 104 ~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 104 EKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred eecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeeh
Confidence 11111 2246799999998877665433 433 44 777775544
No 470
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.63 E-value=3.7 Score=36.27 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=25.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.|++|++|+.+.+.|.++.. +++.+.
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~ 36 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGF-AVAVNY 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence 5799999999999999999987654 454443
No 471
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=78.56 E-value=3.8 Score=37.96 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=53.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccC--C-cccCCCccccccCcccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP--H-LISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p--~-l~~~~~~~~~~~~~~~~~~~DvVF~alp~~ 140 (306)
-+|.|.|++|-+|..+++++... ..++..+++.....+.+.+.+. + +...+....+.+....-.++|++|-|.+..
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~ 225 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGE 225 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHH
Confidence 57999999999999999887764 4566555532211111111000 0 000110000111000003689999999876
Q ss_pred chHHHHHhcCCCCeEEECCc
Q 021865 141 TTQEIIKGLPKSLKIVDLSA 160 (306)
Q Consensus 141 ~s~~~~~~l~~g~~VIDlSa 160 (306)
........+..+.++|.++.
T Consensus 226 ~~~~~~~~l~~~G~~v~~g~ 245 (329)
T cd05288 226 ILDAALTLLNKGGRIALCGA 245 (329)
T ss_pred HHHHHHHhcCCCceEEEEee
Confidence 55666677777777887753
No 472
>PRK08703 short chain dehydrogenase; Provisional
Probab=78.54 E-value=3.8 Score=36.38 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=25.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.|++|.+|.++++.|.++. .+++.+.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g-~~V~~~~ 37 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAG-ATVILVA 37 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcC-CEEEEEe
Confidence 589999999999999999998764 4565554
No 473
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=78.51 E-value=2.2 Score=34.74 Aligned_cols=88 Identities=16% Similarity=0.269 Sum_probs=48.3
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcc-cccccCCcccCCCccccccCcccC-CCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS-IGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~-l~~~~p~l~~~~~~~~~~~~~~~~-~~~DvVF~alp~~~ 141 (306)
|||.||| +|-=--.|...|.+.|.++-++++- .+.|.. +.+.++ + +..+.+.+-.... .++|+||..-..-.
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~aP-GN~G~~~~~~~~~-~---~~~d~~~l~~~a~~~~idlvvvGPE~pL 74 (100)
T PF02844_consen 1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVAP-GNPGTAELGKNVP-I---DITDPEELADFAKENKIDLVVVGPEAPL 74 (100)
T ss_dssp EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEEE---TTGGGTSEEE--S----TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEeC-CCHHHHhhceecC-C---CCCCHHHHHHHHHHcCCCEEEECChHHH
Confidence 7999999 6755566889999999987555542 344432 222111 0 1111111111111 47899998554444
Q ss_pred hHHHHHhc-CCCCeEEE
Q 021865 142 TQEIIKGL-PKSLKIVD 157 (306)
Q Consensus 142 s~~~~~~l-~~g~~VID 157 (306)
..-++..+ +.|++||-
T Consensus 75 ~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 75 VAGLADALRAAGIPVFG 91 (100)
T ss_dssp HTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHHCCCcEEC
Confidence 44566677 56888873
No 474
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.33 E-value=3.3 Score=39.60 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=49.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|.|..+|.=|..+|.+. +..++..-++. .+ + .+...++|+|+.|.+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~-~atVt~chs~T---------------~n---l----~~~~~~ADIvIsAvGkp--- 211 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA-GATVSVCHIKT---------------KD---L----SLYTRQADLIIVAAGCV--- 211 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCC---------------CC---H----HHHHhhCCEEEEcCCCc---
Confidence 68999999999999999999864 34444332211 11 1 11225799999999753
Q ss_pred HHH-Hh-cCCCCeEEECCccc
Q 021865 144 EII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ +. +..|..|||.+-.+
T Consensus 212 ~~i~~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 212 NLLRSDMVKEGVIVVDVGINR 232 (282)
T ss_pred CccCHHHcCCCCEEEEecccc
Confidence 223 22 47799999977655
No 475
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=78.28 E-value=4.5 Score=37.29 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=54.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccccc-CCc-ccCCCccccccCc-ccCCCCCEEEecCCcc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF-PHL-ISQDLPTMVAVKD-ADFSNVDAVFCCLPHG 140 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~-p~l-~~~~~~~~~~~~~-~~~~~~DvVF~alp~~ 140 (306)
.+|.|.|++|.+|+.++++...+ ..++...++....-+.+.+.- .++ ...+....+.+.. ..-.++|+||-|.+..
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~ 219 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAAR-GINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGK 219 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCCh
Confidence 57999999999999999977765 345555543222111111100 000 0000000011100 0013689999999877
Q ss_pred chHHHHHhcCCCCeEEECCc
Q 021865 141 TTQEIIKGLPKSLKIVDLSA 160 (306)
Q Consensus 141 ~s~~~~~~l~~g~~VIDlSa 160 (306)
...+....+..+.++|+++.
T Consensus 220 ~~~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 220 LAGELLSLLGEGGTLVSFGS 239 (324)
T ss_pred hHHHHHHhhcCCcEEEEEec
Confidence 66777777777888888754
No 476
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=78.26 E-value=5.8 Score=35.58 Aligned_cols=87 Identities=14% Similarity=0.204 Sum_probs=47.8
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccC-CCCCEEE-ecCCcc
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVF-CCLPHG 140 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~-~~~DvVF-~alp~~ 140 (306)
.++|+|+|. |-+|+.+.+.|.+.- .+++....+...-+.+.+. + + ...+ +. ++.+ .++|+++ +++...
T Consensus 28 gk~v~I~G~-G~vG~~~A~~L~~~G-~~Vvv~D~~~~~~~~~~~~---~-g--~~~v-~~-~~l~~~~~Dv~vp~A~~~~ 97 (200)
T cd01075 28 GKTVAVQGL-GKVGYKLAEHLLEEG-AKLIVADINEEAVARAAEL---F-G--ATVV-AP-EEIYSVDADVFAPCALGGV 97 (200)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH---c-C--CEEE-cc-hhhccccCCEEEecccccc
Confidence 368999996 799999999998753 4666332111111111111 1 1 0001 11 1122 3799999 445555
Q ss_pred chHHHHHhcCCCCeEEECCc
Q 021865 141 TTQEIIKGLPKSLKIVDLSA 160 (306)
Q Consensus 141 ~s~~~~~~l~~g~~VIDlSa 160 (306)
+..+.++.+.. ..|++-..
T Consensus 98 I~~~~~~~l~~-~~v~~~AN 116 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAAN 116 (200)
T ss_pred cCHHHHHHcCC-CEEEECCc
Confidence 66777777743 35666443
No 477
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.23 E-value=3.5 Score=39.48 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=49.2
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|||.|..+|.=|..+|.++ +..++..-|+. .+ + .+...++|+|+.|.+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~-~atVtichs~T---------------~~---l----~~~~~~ADIvI~AvG~p--- 210 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH-DATVTIAHSKT---------------RN---L----KQLTKEADILVVAVGVP--- 210 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC-CCEEEEECCCC---------------CC---H----HHHHhhCCEEEEccCCc---
Confidence 58999999999999999999865 34444332211 11 1 11225789999999753
Q ss_pred HHH-Hh-cCCCCeEEECCccc
Q 021865 144 EII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ .. +..|..|||.+-.+
T Consensus 211 ~~i~~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 211 HFIGADAVKPGAVVIDVGISR 231 (282)
T ss_pred CccCHHHcCCCcEEEEeeccc
Confidence 223 22 47799999987655
No 478
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=78.18 E-value=2.8 Score=34.86 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=53.9
Q ss_pred EEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCC----CccccccCc--ccCCCCCEEEecCCc
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQD----LPTMVAVKD--ADFSNVDAVFCCLPH 139 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~----~~~~~~~~~--~~~~~~DvVF~alp~ 139 (306)
|+|+| .|-+|.-+.-.|.+ ...++.++..+.... .+.+.--.+...+ ......... ......|+||+|+..
T Consensus 1 I~I~G-~GaiG~~~a~~L~~-~g~~V~l~~r~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIG-AGAIGSLYAARLAQ-AGHDVTLVSRSPRLE-AIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEES-TSHHHHHHHHHHHH-TTCEEEEEESHHHHH-HHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEEC-cCHHHHHHHHHHHH-CCCceEEEEccccHH-hhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 68999 67899999999987 666677776443111 1110000000000 000001111 123679999999988
Q ss_pred cchHHHHHhcC----CCCeEEECCcccccCCccchhhhc
Q 021865 140 GTTQEIIKGLP----KSLKIVDLSADFRLRDVSEYEEWY 174 (306)
Q Consensus 140 ~~s~~~~~~l~----~g~~VIDlSadfRl~~~~~y~~wY 174 (306)
....+..+.+. .+..||=+-.- +...+.++++|
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG--~g~~~~l~~~~ 114 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNG--MGNEEVLAEYF 114 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSS--SSHHHHHHCHS
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCC--CCcHHHHHHHc
Confidence 77777665542 34455533222 33334445554
No 479
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=78.06 E-value=5.2 Score=37.02 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=52.8
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccC-C-cccCCCc-cccccCcccCCCCCEEEecCCccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP-H-LISQDLP-TMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p-~-l~~~~~~-~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
+|.|.|++|.+|..+++++... ..++..++++...-+.+.+... . +...+.. .+..+ .-.++|++|-|.+...
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~-G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~d~vld~~g~~~ 223 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKL-GYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPL---EKERWAGAVDTVGGHT 223 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHh---cCCCceEEEECccHHH
Confidence 8999999999999999977754 3555555433221111111000 0 0000000 00011 0124799999998665
Q ss_pred hHHHHHhcCCCCeEEECCcc
Q 021865 142 TQEIIKGLPKSLKIVDLSAD 161 (306)
Q Consensus 142 s~~~~~~l~~g~~VIDlSad 161 (306)
..+....+..+.++|+++..
T Consensus 224 ~~~~~~~l~~~G~~v~~g~~ 243 (323)
T TIGR02823 224 LANVLAQLKYGGAVAACGLA 243 (323)
T ss_pred HHHHHHHhCCCCEEEEEccc
Confidence 55566677788899988653
No 480
>PRK08226 short chain dehydrogenase; Provisional
Probab=77.97 E-value=4 Score=36.72 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=25.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.|+||.+|..+++.|.++ ..+++.+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~-G~~Vv~~~ 37 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARH-GANLILLD 37 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC-CCEEEEec
Confidence 67999999999999999999976 45555553
No 481
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=77.93 E-value=2.7 Score=39.97 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=40.1
Q ss_pred EEEEccccHHHHHHHHHHhcCCCc-eEEEEecccc--CCcc--cccccCCcccCCCcccc-ccCcccCCCCCEEEecCCc
Q 021865 66 IGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK--AGQS--IGSVFPHLISQDLPTMV-AVKDADFSNVDAVFCCLPH 139 (306)
Q Consensus 66 VaIiGATGyvG~ELlrlL~~HP~~-el~~l~S~~~--aGk~--l~~~~p~l~~~~~~~~~-~~~~~~~~~~DvVF~alp~ 139 (306)
|+|||+ |++|..+.-.|+..+-. +++++-.... .|.. +.+..+.+. ...+. .-+.+++.++|+||+|.+.
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~---~~~i~~~~~~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLA---TGTIVRGGDYADAADADIVVITAGA 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccC---CCeEEECCCHHHhCCCCEEEEcCCC
Confidence 589996 89999999989877655 4666643221 2211 111111111 01111 1113466899999999874
No 482
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.91 E-value=4.1 Score=39.03 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=49.7
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|.|..+|.=|..+|.+. +..++..-++. .++ .+...++|+|+.|.+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~-~ATVt~chs~T---------------~dl-------~~~~k~ADIvIsAvGkp--- 212 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA-KATVTTCHRFT---------------TDL-------KSHTTKADILIVAVGKP--- 212 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEEcCCC---------------CCH-------HHHhhhcCEEEEccCCc---
Confidence 68999999999999999999864 34444442211 111 11235799999999753
Q ss_pred HHH-Hh-cCCCCeEEECCccc
Q 021865 144 EII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadf 162 (306)
+++ +. +..|..|||.+-.+
T Consensus 213 ~~i~~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 213 NFITADMVKEGAVVIDVGINH 233 (282)
T ss_pred CcCCHHHcCCCcEEEEecccc
Confidence 233 22 47899999987665
No 483
>PRK06500 short chain dehydrogenase; Provisional
Probab=77.88 E-value=3.8 Score=36.30 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=25.0
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEE
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l 94 (306)
.++.|.||+|.+|+.+++.|.++. .++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g-~~v~~~ 36 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEG-ARVAIT 36 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEe
Confidence 579999999999999999999765 355554
No 484
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=77.80 E-value=2.1 Score=42.60 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=30.0
Q ss_pred EEccccHHHHHHHHHHhcCCC-ceEEEEeccccCCc
Q 021865 68 LLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQ 102 (306)
Q Consensus 68 IiGATGyvG~ELlrlL~~HP~-~el~~l~S~~~aGk 102 (306)
|+|+||-+|.+.++.+.+||+ ++++.++..++...
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~ 36 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIEL 36 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHH
Confidence 689999999999999999976 89999987665543
No 485
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.80 E-value=4.1 Score=36.64 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=25.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||+|.+|..+++.|.++.. ++..+.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~ 43 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGA-RVVLSA 43 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCC-EEEEEe
Confidence 5799999999999999999997643 665554
No 486
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=77.65 E-value=3.6 Score=36.99 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=25.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.||||.+|.++.+.|+++- .+++.+.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~ 37 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEG-ARVVIAD 37 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEEc
Confidence 479999999999999999999874 4565554
No 487
>PLN02700 homoserine dehydrogenase family protein
Probab=77.63 E-value=5.1 Score=39.88 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.4
Q ss_pred CccEEEEEccccHHHHHHHHHHhc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLAN 85 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~ 85 (306)
++++|+|+| .|-||+.|+++|.+
T Consensus 2 ~~i~i~liG-~G~VG~~ll~ql~~ 24 (377)
T PLN02700 2 KKIPVLLLG-CGGVGRHLLRHIVS 24 (377)
T ss_pred cEEEEEEEe-cChHHHHHHHHHHH
Confidence 457999999 89999999999874
No 488
>PRK07877 hypothetical protein; Provisional
Probab=77.32 E-value=4.1 Score=43.87 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=55.7
Q ss_pred CccEEEEEccccHHHHHHHHHHhcCCC-ceEEEE--------------eccccCCc--------ccccccCCcccCCCcc
Q 021865 62 KQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLM--------------TADRKAGQ--------SIGSVFPHLISQDLPT 118 (306)
Q Consensus 62 ~~~kVaIiGATGyvG~ELlrlL~~HP~-~el~~l--------------~S~~~aGk--------~l~~~~p~l~~~~~~~ 118 (306)
+..||+|+|+ | +|+.++..|..--. -+++++ .+....|+ .+.++.|.+....+.
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~- 182 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT- 182 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe-
Confidence 3468999999 8 89999999874322 122222 12222333 223344444321110
Q ss_pred ccccCc---c-cCCCCCEEEecCCccchHHHHHh--cCCCCeEEECCccc
Q 021865 119 MVAVKD---A-DFSNVDAVFCCLPHGTTQEIIKG--LPKSLKIVDLSADF 162 (306)
Q Consensus 119 ~~~~~~---~-~~~~~DvVF~alp~~~s~~~~~~--l~~g~~VIDlSadf 162 (306)
+.+++ + -+.++|+|+.|+.+-.++.++.. ...++.+|--+++.
T Consensus 183 -~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~ 231 (722)
T PRK07877 183 -DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR 231 (722)
T ss_pred -ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11221 1 23689999999998777666643 36688888766644
No 489
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=77.01 E-value=4.7 Score=36.41 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=24.5
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.|++|.+|.++.+.|++.- .+++.+.
T Consensus 10 k~vlItG~s~gIG~~la~~l~~~G-~~v~~~~ 40 (266)
T PRK06171 10 KIIIVTGGSSGIGLAIVKELLANG-ANVVNAD 40 (266)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998653 3555443
No 490
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=76.80 E-value=5.2 Score=36.13 Aligned_cols=85 Identities=7% Similarity=0.130 Sum_probs=49.1
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccc-cccCcccCCCCCEEEecCCcc-c
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM-VAVKDADFSNVDAVFCCLPHG-T 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~-~~~~~~~~~~~DvVF~alp~~-~ 141 (306)
.||.||| .|-+|..-++.|++.. .+++.+. .. ....+.+... ...+... .+.+..++.++|+||.|++.. .
T Consensus 10 k~vlVvG-gG~va~rk~~~Ll~~g-a~VtVvs-p~-~~~~l~~l~~---~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 10 RAVLVVG-GGDVALRKARLLLKAG-AQLRVIA-EE-LESELTLLAE---QGGITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CeEEEEC-cCHHHHHHHHHHHHCC-CEEEEEc-CC-CCHHHHHHHH---cCCEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 4899999 7999999999888754 3555553 22 1111111100 0001000 112234467899999999876 5
Q ss_pred hHHHHHhc-CCCCeE
Q 021865 142 TQEIIKGL-PKSLKI 155 (306)
Q Consensus 142 s~~~~~~l-~~g~~V 155 (306)
..++.... ..|+.|
T Consensus 83 n~~i~~~a~~~~ilv 97 (205)
T TIGR01470 83 NRRVAHAARARGVPV 97 (205)
T ss_pred HHHHHHHHHHcCCEE
Confidence 55666555 557766
No 491
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=76.79 E-value=4.5 Score=39.03 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=51.9
Q ss_pred ccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCc--cc-cccCcccC--CCCCEEEecC
Q 021865 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLP--TM-VAVKDADF--SNVDAVFCCL 137 (306)
Q Consensus 63 ~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~--~~-~~~~~~~~--~~~DvVF~al 137 (306)
-.+|.|.||||-||.-+++++...-. ..+..++++..-+.+.+...... .+.. ++ +.+ .+.. .++|+||.+.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~v-i~y~~~~~~~~v-~~~t~g~gvDvv~D~v 219 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHV-INYREEDFVEQV-RELTGGKGVDVVLDTV 219 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEE-EcCCcccHHHHH-HHHcCCCCceEEEECC
Confidence 36799999999999999998876654 44444443322112221111000 0000 01 111 0111 3699999999
Q ss_pred CccchHHHHHhcCCCCeEEE
Q 021865 138 PHGTTQEIIKGLPKSLKIVD 157 (306)
Q Consensus 138 p~~~s~~~~~~l~~g~~VID 157 (306)
+.....+....+..+.+++.
T Consensus 220 G~~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 220 GGDTFAASLAALAPGGRLVS 239 (326)
T ss_pred CHHHHHHHHHHhccCCEEEE
Confidence 88777777777855544443
No 492
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.79 E-value=3.6 Score=39.49 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=48.8
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|||.|..+|.=|..+|.+. +..++..-|+. .++ .+...++|+|+.|.+.-
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~-~ATVtichs~T---------------~~L-------~~~~~~ADIvV~AvGkp--- 213 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE-NCSVTICHSKT---------------HNL-------SSITSKADIVVAAIGSP--- 213 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCC---------------CCH-------HHHHhhCCEEEEccCCC---
Confidence 58999999999999999999864 34444332211 111 11225799999999743
Q ss_pred HHH-Hh-cCCCCeEEECCccc
Q 021865 144 EII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ +. +..|..|||.+-.+
T Consensus 214 ~~i~~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 214 LKLTAEYFNPESIVIDVGINR 234 (288)
T ss_pred CccCHHHcCCCCEEEEeeccc
Confidence 333 33 47799999977544
No 493
>PRK06523 short chain dehydrogenase; Provisional
Probab=76.75 E-value=4.8 Score=36.16 Aligned_cols=31 Identities=19% Similarity=0.066 Sum_probs=25.9
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.+|.|.||||.+|.++.+.|.++ ..++..+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~ 40 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEA-GARVVTTA 40 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHC-CCEEEEEe
Confidence 57999999999999999999976 45666554
No 494
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=76.70 E-value=4.9 Score=37.22 Aligned_cols=95 Identities=9% Similarity=0.040 Sum_probs=51.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCccccccc-CCc-ccCCCccccccCcccCCCCCEEEecCCccc
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF-PHL-ISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~-p~l-~~~~~~~~~~~~~~~~~~~DvVF~alp~~~ 141 (306)
-+|.|.||+|-+|..+++++... ..++...++....-+.+.+.- -++ ...+....+.+....-.++|+||-+.+...
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~~ 223 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGEF 223 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHHH
Confidence 57999999999999999977654 456655553222111111100 000 000000000110000135899999988655
Q ss_pred hHHHHHhcCCCCeEEECC
Q 021865 142 TQEIIKGLPKSLKIVDLS 159 (306)
Q Consensus 142 s~~~~~~l~~g~~VIDlS 159 (306)
..+....+..+.++|.++
T Consensus 224 ~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 224 SSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HHHHHHhhccCCEEEEEc
Confidence 555666677777777764
No 495
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.66 E-value=4 Score=39.18 Aligned_cols=82 Identities=17% Similarity=0.328 Sum_probs=43.9
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEE---------------eccccCCcc--------cccccCCcccCCC-cccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM---------------TADRKAGQS--------IGSVFPHLISQDL-PTMV 120 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l---------------~S~~~aGk~--------l~~~~p~l~~~~~-~~~~ 120 (306)
||.|+|+ |-+|.|+++.|..-.--++..+ ...+..|++ +.+..|.+..... ..+.
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 6899995 5678999998874222222222 222334432 2234444321110 0111
Q ss_pred ccCcccCCCCCEEEecCCccchHHHHH
Q 021865 121 AVKDADFSNVDAVFCCLPHGTTQEIIK 147 (306)
Q Consensus 121 ~~~~~~~~~~DvVF~alp~~~s~~~~~ 147 (306)
+.+.+-+.+.|+|+.|+.+-.++.++.
T Consensus 80 ~~~~~f~~~fdvVi~alDn~~aR~~in 106 (291)
T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWIN 106 (291)
T ss_pred chhHHHhcCCCEEEECCCCHHHHHHHH
Confidence 111222378999999999887776653
No 496
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=76.61 E-value=4.4 Score=38.44 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=29.7
Q ss_pred ccCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccc
Q 021865 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR 98 (306)
Q Consensus 60 ~~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~ 98 (306)
+.++.++.|.|||+=+|.|+.+.|+++ ..++++++.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~-g~~liLvaR~~ 40 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARR-GYNLILVARRE 40 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCcH
Confidence 345678999999999999999999976 34577776433
No 497
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=76.59 E-value=4.8 Score=35.51 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=25.4
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEe
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~ 95 (306)
.++.|.|++|.+|.++.+.|.+.. .++..+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~ 33 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG-YRVIATY 33 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEEe
Confidence 478999999999999999998764 5665554
No 498
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=76.58 E-value=7.5 Score=29.05 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=25.3
Q ss_pred EEEEEccccHHHHHHHHHHhcCCCceEEEEeccc
Q 021865 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR 98 (306)
Q Consensus 65 kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~ 98 (306)
||.|+| .|++|.|+...|.+. ..+++.+..+.
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~-g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAEL-GKEVTLIERSD 32 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHT-TSEEEEEESSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHh-CcEEEEEeccc
Confidence 688999 899999999999763 46777776443
No 499
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.52 E-value=4.1 Score=39.01 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=49.6
Q ss_pred cEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCcccCCCccccccCcccCCCCCEEEecCCccchH
Q 021865 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (306)
Q Consensus 64 ~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~~~~~~~~~~~~~~~~~~DvVF~alp~~~s~ 143 (306)
.+|.|+|.|..+|.=|..+|.+. +..++..-|+. .+ + .+...++|+|+.|.+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~-~atVtichs~T---------------~~---l----~~~~~~ADIvI~AvG~~--- 211 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE-NATVTIAHSRT---------------KD---L----PQVAKEADILVVATGLA--- 211 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCC---------------CC---H----HHHHhhCCEEEEecCCc---
Confidence 58999999999999999999864 34444432211 11 1 11235789999999753
Q ss_pred HHH-Hh-cCCCCeEEECCccc
Q 021865 144 EII-KG-LPKSLKIVDLSADF 162 (306)
Q Consensus 144 ~~~-~~-l~~g~~VIDlSadf 162 (306)
.++ +. +..|..|||.+-.+
T Consensus 212 ~~i~~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 212 KFVKKDYIKPGAIVIDVGMDR 232 (284)
T ss_pred CccCHHHcCCCCEEEEccCcc
Confidence 233 23 47799999988766
No 500
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=76.45 E-value=5 Score=39.30 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=50.5
Q ss_pred cCccEEEEEccccHHHHHHHHHHhcCCCceEEEEeccccCCcccccccCCccc---CCCcc--c-cccCcccCCCCCEEE
Q 021865 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS---QDLPT--M-VAVKDADFSNVDAVF 134 (306)
Q Consensus 61 ~~~~kVaIiGATGyvG~ELlrlL~~HP~~el~~l~S~~~aGk~l~~~~p~l~~---~~~~~--~-~~~~~~~~~~~DvVF 134 (306)
.+..+|.|+||+|-+|+.++++.....-..++...|.+ ...+.+ .+.. .|..+ + +.+...--.+.|+||
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e--~~~l~k---~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVl 230 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKE--KLELVK---KLGADEVVDYKDENVVELIKKYTGKGVDVVL 230 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccc--hHHHHH---HcCCcEeecCCCHHHHHHHHhhcCCCccEEE
Confidence 33468999999999999999987766623333343322 222211 1110 11111 1 111111023699999
Q ss_pred ecCCccchHHHHHhc-CC-CCeEEECCcccc
Q 021865 135 CCLPHGTTQEIIKGL-PK-SLKIVDLSADFR 163 (306)
Q Consensus 135 ~alp~~~s~~~~~~l-~~-g~~VIDlSadfR 163 (306)
-|.+......-...+ .. +.-+|=+.++.-
T Consensus 231 D~vg~~~~~~~~~~l~~~g~~~~i~~~~~~~ 261 (347)
T KOG1198|consen 231 DCVGGSTLTKSLSCLLKGGGGAYIGLVGDEL 261 (347)
T ss_pred ECCCCCccccchhhhccCCceEEEEeccccc
Confidence 999875444444443 22 233444444433
Done!