RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021865
(306 letters)
>gnl|CDD|215522 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate
reductase.
Length = 381
Score = 450 bits (1158), Expect = e-159
Identities = 202/262 (77%), Positives = 225/262 (85%)
Query: 37 SSIRGSATLPTKSLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96
+ R S T +S+ + KSE++ RI +LGASGYTGAE+ RLLANHP F I +MTA
Sbjct: 12 LASRASVTSSPQSVVSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTA 71
Query: 97 DRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV 156
DRKAGQS GSVFPHLI+QDLP +VAVKDADFS+VDAVFCCLPHGTTQEIIK LPK LKIV
Sbjct: 72 DRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKALPKDLKIV 131
Query: 157 DLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQ 216
DLSADFRLRD++EYEEWYG PH AP+LQKEAVYGLTE+ RE+IK+ARLVANPGCYPT IQ
Sbjct: 132 DLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQ 191
Query: 217 LPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIE 276
LPLVPL++A LI+ NIIIDAKSGVSGAGRGAKEANLY+EIAEGI +YGVTRHRHVPEIE
Sbjct: 192 LPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEIE 251
Query: 277 QGLTGFASSKVTVSFTPHLMPM 298
QGL A SKVT SFTPHLMPM
Sbjct: 252 QGLADAAGSKVTPSFTPHLMPM 273
>gnl|CDD|234761 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase;
Validated.
Length = 343
Score = 356 bits (917), Expect = e-123
Identities = 121/239 (50%), Positives = 159/239 (66%), Gaps = 4/239 (1%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+++G++GASGYTG E++RLL NHP I +T+ AG+ + V PHL +
Sbjct: 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEP 60
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPHIA 180
+ + D VF LPHG + ++ L ++ +K++DLSADFRL+D YE+WYG H A
Sbjct: 61 LDPEILAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAA 120
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
P+L KEAVYGL E++RE+IK ARL+ANPGCYPT+ L L PL++A LI +IIIDAKSG
Sbjct: 121 PELLKEAVYGLPELNREEIKGARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSG 180
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMV 299
VSGAGR A E L+SE+ E + Y V HRH PEIEQ L+ A VSFTPHL+PM
Sbjct: 181 VSGAGRKASEGTLFSEVNENLRPYKVGGHRHTPEIEQELSALAG---EVSFTPHLVPMT 236
>gnl|CDD|233597 TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate reductase,
common form. This model represents the more common of
two related families of
N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme
catalyzing the third step or Arg biosynthesis from Glu.
The two families differ by phylogeny, similarity
clustering, and the gap architecture in a multiple
sequence alignment. Bacterial members of this family
tend to be found within Arg biosynthesis operons [Amino
acid biosynthesis, Glutamate family].
Length = 346
Score = 351 bits (902), Expect = e-121
Identities = 119/239 (49%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAV 122
+++ ++GASGYTG E++RLL NHP I + + R+ AG+ + V PHL + +
Sbjct: 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPI 60
Query: 123 KDADFS-NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
+ + D VF LPHG + E+ L +K++DLSADFRL+D YE+WYG H
Sbjct: 61 DVEEILEDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPELYEKWYGFEHAG 120
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
P+L ++AVYGL E+ RE+IK ARL+ANPGCYPT+ L L PL++ LI +II+DAKSG
Sbjct: 121 PELLQKAVYGLPELHREEIKGARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSG 180
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMV 299
VSGAGR A EAN + E+ E + Y VT HRH PEIEQ L A KV VSFTPHL+PM
Sbjct: 181 VSGAGRKASEANHFPEVNENLRPYKVTGHRHTPEIEQELGRLAGGKVKVSFTPHLVPMT 239
>gnl|CDD|223081 COG0002, ArgC, Acetylglutamate semialdehyde dehydrogenase [Amino
acid transport and metabolism].
Length = 349
Score = 298 bits (765), Expect = e-100
Identities = 114/240 (47%), Positives = 157/240 (65%), Gaps = 4/240 (1%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS-QDLP-TMVA 121
+++G++GASGYTG E++RLLA HP + L+++ +AG+ + V P+L DLP +
Sbjct: 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTID 62
Query: 122 VKDADFSNVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
+ + D VF LPHG + E++ + L K++DLSADFRL+D YE+WYG H
Sbjct: 63 PEKIELDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAG 122
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQY-RNIIIDAKS 239
P+L ++AVYGL E+ RE I+ A+L+ANPGCYPT+ L L PL++A L+ I+DAKS
Sbjct: 123 PELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKS 182
Query: 240 GVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMV 299
GVSGAGR A N + E+ + + YG+T HRH PEIEQ L A KV V FTPHL P V
Sbjct: 183 GVSGAGRKASVKNHFPEVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFV 242
>gnl|CDD|214863 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding
domain. The semialdehyde dehydrogenase family is found
in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC),
which is involved in arginine biosynthesis, and
aspartate-semialdehyde dehydrogenase, an enzyme involved
in the biosynthesis of various amino acids from
aspartate. This family is also found in yeast and fungal
Arg5,6 protein, which is cleaved into the enzymes
N-acety-gamma-glutamyl-phosphate reductase and
acetylglutamate kinase. These are also involved in
arginine biosynthesis. All proteins in this entry
contain a NAD binding region of semialdehyde
dehydrogenase.
Length = 123
Score = 124 bits (314), Expect = 1e-35
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 25/143 (17%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAVK 123
++ ++GA+GY G E++RLLA HP F + + A R AG+ + PHL ++ +
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPDFELTALAASSRSAGKKVSEAGPHL-KGEVVLELDPP 59
Query: 124 DADFSNVDAVFCCLPHGTTQEIIKGLPKSL----KIVDLSADFRLRDVSEYEEWYGQPHI 179
D + VD VF LPHG ++E LP++ ++DLS+ FR+ D
Sbjct: 60 DFEELAVDIVFLALPHGVSKESAPLLPRAAAAGAVVIDLSSAFRMDD------------- 106
Query: 180 APDLQKEAVYGLTEISREDIKNA 202
+ YGL E++ E IK A
Sbjct: 107 ------DVPYGLPEVNPEAIKKA 123
>gnl|CDD|201603 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding
domain. This Pfam entry contains the following members:
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC)
Aspartate-semialdehyde dehydrogenase.
Length = 121
Score = 115 bits (291), Expect = 3e-32
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAVK 123
++ ++GA+GY G E++RLLA HP + + A R AG+ + +P L + V
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSRSAGKKVAFAYPILEGGKDLLLEDVD 60
Query: 124 DADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPHIAPD 182
D +VD VF LP G ++E+ L ++ ++DLS+ FR+ D
Sbjct: 61 PEDLKDVDIVFLALPAGVSKELAPKLLEAGAVVIDLSSAFRMDD---------------- 104
Query: 183 LQKEAVYGLTEISREDIKNA 202
+ Y L E++RE IK A
Sbjct: 105 ---DVPYVLPEVNREAIKKA 121
>gnl|CDD|237004 PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase;
Provisional.
Length = 313
Score = 85.2 bits (212), Expect = 5e-19
Identities = 65/225 (28%), Positives = 93/225 (41%), Gaps = 55/225 (24%)
Query: 70 GASGYTGAEIVRLLANHPYFGIKLMT---ADRKAGQSIGSVFPHLISQDLPTMVAVKDAD 126
G +G TG +I LA I+L++ A RK D A +
Sbjct: 9 GEAGTTGLQIRERLAGRS--DIELLSIPEAKRK---------------D----AAARREL 47
Query: 127 FSNVDAVFCCLPHGTTQEIIKGLP-KSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQK 185
+ D CLP +E + + + +++D S R AP
Sbjct: 48 LNAADVAILCLPDDAAREAVALIDNPATRVIDASTAHR---------------TAPGW-- 90
Query: 186 EAVYGLTEIS---REDIKNARLVANPGCYPT-SIQLPLVPLIQANLIQ-YRNIIIDAKSG 240
VYG E++ RE I A+ VANPGCYPT +I L L PL+ A L+ + I+A SG
Sbjct: 91 --VYGFPELAPGQRERIAAAKRVANPGCYPTGAIAL-LRPLVDAGLLPADYPVSINAVSG 147
Query: 241 VSGAGRGAKEA--NLYSEIAEGIYSYGVT-RHRHVPEIEQ--GLT 280
SG G+ A A YG+ H+H+PE++ GL
Sbjct: 148 YSGGGKAMIAAYEAAPDGKAPAFRLYGLGLAHKHLPEMQAHAGLA 192
>gnl|CDD|233220 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase
(non-peptidoglycan organisms). Two closely related
families of aspartate-semialdehyde dehydrogenase are
found. They differ by a deep split in phylogenetic and
percent identity trees and in gap patterns. Separate
models are built for the two types in order to exclude
the USG-1 protein, found in several species, which is
specifically related to the Bacillus subtilis type of
aspartate-semialdehyde dehydrogenase. Members of this
type are found primarily in organisms that lack
peptidoglycan [Amino acid biosynthesis, Aspartate
family].
Length = 341
Score = 81.0 bits (200), Expect = 2e-17
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 21/192 (10%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGI-KLMTADRKAGQSIGSVFPHLISQDLP----- 117
+R+ +LGA+G G + V+LLA HPYF + K++ + R AG+ G + D+P
Sbjct: 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRD 60
Query: 118 -TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSA-DFRLR-DVSEYEEWY 174
+V + +VD VF LP +E+ L ++ K V +A + R+ DV
Sbjct: 61 LPIVEPEPIAEDDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDV------- 113
Query: 175 GQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNII 234
P I P++ + + L ++ +E +V NP C + L L PLI A I + +
Sbjct: 114 --PLIIPEVNSDHL-ELLKVQKERGWKGFIVTNPNCTTAGLTLALKPLIDAFGI--KKVH 168
Query: 235 IDAKSGVSGAGR 246
+ VSGAG
Sbjct: 169 VTTMQAVSGAGY 180
>gnl|CDD|236329 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed.
Length = 349
Score = 76.8 bits (190), Expect = 7e-16
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 23/192 (11%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLP----- 117
+++G+LGA+G G V+LLANHP+F + + A +R AG++ G + +P
Sbjct: 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVAD 63
Query: 118 -TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLR-DVSEYEEWY 174
+V+ +VD VF LP E+ + K+ K V ++ R+ DV
Sbjct: 64 MEVVSTDPEAVDDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDV------- 116
Query: 175 GQPHIAPDLQKEAVYGLTEISRE-DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI 233
P + P++ E + L E+ R+ + +V NP C + L L PL+ + +
Sbjct: 117 --PLVIPEVNPEHL-ELIEVQRKRRGWDGFIVTNPNCSTIGLVLALKPLMDFGI---ERV 170
Query: 234 IIDAKSGVSGAG 245
+ +SGAG
Sbjct: 171 HVTTMQAISGAG 182
>gnl|CDD|233598 TIGR01851, argC_other, N-acetyl-gamma-glutamyl-phosphate reductase,
uncommon form. This model represents the less common of
two related families of
N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme
catalyzing the third step or Arg biosynthesis from Glu.
The two families differ by phylogeny, similarity
clustering, and gap architecture in a multiple sequence
alignment [Amino acid biosynthesis, Glutamate family].
Length = 310
Score = 72.2 bits (177), Expect = 2e-14
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 36/185 (19%)
Query: 123 KDAD-----FSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEW-YG 175
KDA + D CLP +E + + I+D S +R D +W YG
Sbjct: 38 KDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTAD-----DWAYG 92
Query: 176 QPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYR-NII 234
P +AP RE I+N++ +ANPGCYPT + PL++A ++ I
Sbjct: 93 FPELAPG------------QREKIRNSKRIANPGCYPTGFIALMRPLVEAGILPADFPIT 140
Query: 235 IDAKSGVSGAGRG------AKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT 288
I+A SG SG G+ A+ S IY +T H+H+PE+ +G A +
Sbjct: 141 INAVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALT-HKHLPEMRV-HSGLALPPI- 197
Query: 289 VSFTP 293
FTP
Sbjct: 198 --FTP 200
>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 66.1 bits (162), Expect = 3e-12
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 38/205 (18%)
Query: 65 RIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAV 122
+ +LGA+G G ++ LL H F ++ A R AG+ S +P A
Sbjct: 3 NVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEF--GGKSIGVPEDAA- 59
Query: 123 KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRL-RDVSEYEEWYGQPHIA 180
+ FS+VD VF ++E+ ++ +V D S+ FR+ DV P +
Sbjct: 60 DEFVFSDVDIVFFAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDV---------PLVV 110
Query: 181 PDLQKEAVYGLTEISREDIKNAR----LVANPGCYPTSIQL--PLVPLIQANLIQYRNII 234
P E++ E + + + ++ANP C ++IQL L PL A I + ++
Sbjct: 111 P-----------EVNPEHLIDYQKRGFIIANPNC--STIQLVLALKPLHDAFGI--KRVV 155
Query: 235 IDAKSGVSGAGRGAKEANLYSEIAE 259
+ VSGAG L +
Sbjct: 156 VSTYQAVSGAGAEGGVE-LAGQTDA 179
>gnl|CDD|217222 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase,
dimerisation domain. This Pfam entry contains the
following members: N-acetyl-glutamine semialdehyde
dehydrogenase (AgrC) Aspartate-semialdehyde
dehydrogenase.
Length = 167
Score = 58.9 bits (143), Expect = 1e-10
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQ 277
L PL A L +I+D VSGAG+ AK + IA+ + Y H PE +
Sbjct: 1 LKPLRDA-LGGLERVIVDTYQAVSGAGKKAKPGVFGAPIADNLIPYIDGEEHNGTPETRE 59
Query: 278 GLTGFASSKVTVSFTPH 294
L +K + FTP
Sbjct: 60 ELKMVNETKKILGFTPK 76
>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase
(peptidoglycan organisms). Two closely related families
of aspartate-semialdehyde dehydrogenase are found. They
differ by a deep split in phylogenetic and percent
identity trees and in gap patterns. This model
represents a branch more closely related to the USG-1
protein than to the other aspartate-semialdehyde
dehydrogenases represented in model TIGR00978 [Amino
acid biosynthesis, Aspartate family].
Length = 338
Score = 50.6 bits (121), Expect = 4e-07
Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 42/202 (20%)
Query: 65 RIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
+ ++GA+G G E+++LL N P + L+ + R AG+ + ++L +
Sbjct: 1 NVAIVGATGAVGQEMLKLLEERNFPIDKLVLLASARSAGRKL-----TFKGKEL-EVEEA 54
Query: 123 KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRL-RDVSEYEEWYGQP 177
+ F +D ++E PK+ K ++D ++ FR+ DV P
Sbjct: 55 ETESFEGIDIALFSAGGSVSKEFA---PKAAKAGVIVIDNTSAFRMDPDV---------P 102
Query: 178 HIAPDLQKEAVYGLTEISREDIKNAR---LVANPGCYPTSIQLPLVPLIQANLIQYRNII 234
+ P E++ ED+K ++ANP C ++IQ+ +V + + + ++
Sbjct: 103 LVVP-----------EVNFEDLKEFNPKGIIANPNC--STIQMVVVLKPLHDEAKIKRVV 149
Query: 235 IDAKSGVSGAGRGAKEANLYSE 256
+ VSGAG E LY++
Sbjct: 150 VSTYQAVSGAGNAGVE-ELYNQ 170
>gnl|CDD|178009 PLN02383, PLN02383, aspartate semialdehyde dehydrogenase.
Length = 344
Score = 47.5 bits (113), Expect = 3e-06
Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 35/201 (17%)
Query: 59 KSEKQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDL 116
+E + ++G +G G E + +L + PY +K++ + R AG+ + ++L
Sbjct: 3 LTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEEL 62
Query: 117 PTMVAVKDADFSNVDAVF------CCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY 170
+ F VD G + K +VD S+ FR+ +
Sbjct: 63 ------TEDSFDGVDIALFSAGGSISKKFGPIA-----VDKGAVVVDNSSAFRMEE---- 107
Query: 171 EEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV-PLIQANLIQ 229
G P + P++ EA+ + L+ANP C T I L V PL + +
Sbjct: 108 ----GVPLVIPEVNPEAMKH----IKLGKGKGALIANPNC-STIICLMAVTPLHR--HAK 156
Query: 230 YRNIIIDAKSGVSGAGRGAKE 250
+ +++ SGAG A E
Sbjct: 157 VKRMVVSTYQAASGAGAAAME 177
>gnl|CDD|136022 PRK06728, PRK06728, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 347
Score = 42.7 bits (100), Expect = 1e-04
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 28/189 (14%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIK---LMTADRKAGQSIGSVFPHLISQDL 116
SEK + ++GA+G G +I+ LL F I L+++ R AG+++ +I Q+
Sbjct: 2 SEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQE- 60
Query: 117 PTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQ 176
K F VD F +++ + S IV + + SEY +
Sbjct: 61 -----AKINSFEGVDIAFFSAGGEVSRQFVNQAVSSGAIV-------IDNTSEYRMAHDV 108
Query: 177 PHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIID 236
P + P++ + ++ ++A P C + L P+ + II+
Sbjct: 109 PLVVPEVNAHTLK----------EHKGIIAVPNCSALQMVTALQPIRKV--FGLERIIVS 156
Query: 237 AKSGVSGAG 245
VSG+G
Sbjct: 157 TYQAVSGSG 165
>gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase
(PCBER) like, atypical (a) SDRs. PCBER and
pinoresinol-lariciresinol reductases are NADPH-dependent
aromatic alcohol reductases, and are atypical members of
the SDR family. Other proteins in this subgroup are
identified as eugenol synthase. These proteins contain
an N-terminus characteristic of NAD(P)-binding proteins
and a small C-terminal domain presumed to be involved in
substrate binding, but they do not have the conserved
active site Tyr residue typically found in SDRs.
Numerous other members have unknown functions. The
glycine rich NADP-binding motif in this subgroup is of 2
forms: GXGXXG and G[GA]XGXXG; it tends to be atypical
compared with the forms generally seen in classical or
extended SDRs. The usual SDR active site tetrad is not
present, but a critical active site Lys at the usual SDR
position has been identified in various members, though
other charged and polar residues are found at this
position in this subgroup. Atypical SDR-related proteins
retain the Rossmann fold of the SDRs, but have limited
sequence identity and generally lack the catalytic
properties of the archetypical members. Atypical SDRs
include biliverdin IX beta reductase (BVR-B,aka flavin
reductase), NMRa (a negative transcriptional regulator
of various fungi), progesterone 5-beta-reductase like
proteins, phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 282
Score = 41.9 bits (99), Expect = 2e-04
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH---LISQDLPTMVA 121
+I + GA+G G IV L P F + ++T R + S P ++ D + +
Sbjct: 1 KIAIAGATGTLGGPIVSALLASPGFTVTVLT--RPSSTSSNEFQPSGVKVVPVDYASHES 58
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIK 147
+ A VDAV L + +K
Sbjct: 59 LVAA-LKGVDAVISALGGAAIGDQLK 83
>gnl|CDD|187560 cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs.
Atypical SDRs in this subgroup include CC3 (also known
as TIP30) which is implicated in tumor suppression.
Atypical SDRs are distinct from classical SDRs. Members
of this subgroup have a glycine rich NAD(P)-binding
motif that resembles the extended SDRs, and have an
active site triad of the SDRs (YXXXK and upstream Ser),
although the upstream Asn of the usual SDR active site
is substituted with Asp. For CC3, the Tyr of the triad
is displaced compared to the usual SDRs and the protein
is monomeric, both these observations suggest that the
usual SDR catalytic activity is not present. NADP
appears to serve an important role as a ligand, and may
be important in the interaction with other
macromolecules. Atypical SDRs generally lack the
catalytic residues characteristic of the SDRs, and their
glycine-rich NAD(P)-binding motif is often different
from the forms normally seen in classical or extended
SDRs. Atypical SDRs include biliverdin IX beta reductase
(BVR-B,aka flavin reductase), NMRa (a negative
transcriptional regulator of various fungi),
progesterone 5-beta-reductase like proteins,
phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 214
Score = 40.7 bits (96), Expect = 4e-04
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-SIGSVFPHLISQDLPTMVAVKDAD 126
+LGA+G G ++R L PY+ K+ R+ I D + +A
Sbjct: 5 VLGATGLVGKHLLRELLKSPYYS-KVTAIVRRKLTFPEAKEKLVQIVVDFERLDEYLEA- 62
Query: 127 FSNVDAVFCCLPHGTT 142
F N D FCCL GTT
Sbjct: 63 FQNPDVGFCCL--GTT 76
>gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 334
Score = 41.3 bits (98), Expect = 4e-04
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 51/202 (25%)
Query: 64 VRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSI---GSVFPHLISQDLPT 118
+ ++GA+G G E++ +L N P ++L+ + R AG+ + G ++L
Sbjct: 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG--------KEL-K 52
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRL-RDVSEYEEW 173
+ + DFS VD +++ PK+ ++D S+ FR+ DV
Sbjct: 53 VEDLTTFDFSGVDIALFSAGGSVSKKYA---PKAAAAGAVVIDNSSAFRMDPDV------ 103
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNAR---LVANPGCYPTSIQLPLV--PLIQANLI 228
P + P E++ E + R ++ANP C ++IQ+ + PL A I
Sbjct: 104 ---PLVVP-----------EVNPEALAEHRKKGIIANPNC--STIQMVVALKPLHDAAGI 147
Query: 229 QYRNIIIDAKSGVSGAGRGAKE 250
+ +++ VSGAG+ E
Sbjct: 148 K--RVVVSTYQAVSGAGKAGME 167
>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.
Length = 257
Score = 37.4 bits (88), Expect = 0.005
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPH-LISQDLPTMVA 121
+++ + GASG G E++ + ++L+ A DR +G I+ DL ++A
Sbjct: 2 IKVAVAGASGRMGRELIEAVEAAE--DLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA 59
Query: 122 VKDA--DFSNVDAVF 134
D DF+ +A
Sbjct: 60 DADVLIDFTTPEATL 74
>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus.
Dihydrodipicolinate reductase (DapB) reduces the
alpha,beta-unsaturated cyclic imine,
dihydro-dipicolinate. This reaction is the second
committed step in the biosynthesis of L-lysine and its
precursor meso-diaminopimelate, which are critical for
both protein and cell wall biosynthesis. The N-terminal
domain of DapB binds the dinucleotide NADPH.
Length = 122
Score = 34.1 bits (79), Expect = 0.020
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAV 122
+++ ++GASG G E+++ + P +L+ A DR +GS L +
Sbjct: 1 IKVAVVGASGRMGRELIKAILEAP--DFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDD 58
Query: 123 KDADFSNVDAV 133
+ ++ D +
Sbjct: 59 LEEVLADADVL 69
>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding.
Length = 182
Score = 34.6 bits (80), Expect = 0.030
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 13/142 (9%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA 125
I ++GA+G TG +V+ L G ++ R ++ + +DL + +
Sbjct: 1 IAVIGATGKTGRRLVKELLAR---GHQVTALSRNPSKAPAPGVTP-VQKDLFDLADL-AE 55
Query: 126 DFSNVDAVFCCLPHGT-----TQEIIKGLPKS--LKIVDLSADFRLRDVSEYEEWYGQPH 178
+ VDAV + ++ ++ +IV +SA RD P
Sbjct: 56 ALAGVDAVVDAFGARPDDSDGVKHLLDAAARAGVRRIVVVSAAGLYRDEPGTFRLDDAPL 115
Query: 179 IAPDLQKEAVYGLTEISREDIK 200
P + +A + +
Sbjct: 116 FPPYARAKAA-AEELLRASGLD 136
>gnl|CDD|234294 TIGR03649, ergot_EASG, ergot alkaloid biosynthesis protein,
AFUA_2G17970 family. This family consists of fungal
proteins of unknown function associated with secondary
metabolite biosynthesis, such as of the ergot alkaloids
such as ergovaline. Nomenclature differs because gene
order differs - this is EasG in Neotyphodium lolii but
is designated ergot alkaloid biosynthetic protein A in
several other fungi.
Length = 285
Score = 33.1 bits (76), Expect = 0.14
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 66 IGLLGASGYTGAEIVRLL--ANHPYFGIKLMTADRKAGQSIGSVFPH-----LISQDLPT 118
I L G +G T + I RLL A+ P+ + A R + S G H L
Sbjct: 2 ILLTGGTGKTASRIARLLQAASVPF-----LVASRSSSSSAGPNEKHVKFDWLDEDTWDN 56
Query: 119 MVAVKDADFSNVDAVFCCLPH 139
+ D + AV+ P
Sbjct: 57 PFSSDDGMEPEISAVYLVAPP 77
>gnl|CDD|223745 COG0673, MviM, Predicted dehydrogenases and related proteins
[General function prediction only].
Length = 342
Score = 32.9 bits (75), Expect = 0.19
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIGSVFPHLIS-QDLPT 118
K +R+G++GA G G + LA + DR ++ F + DL
Sbjct: 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEE 61
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIK 147
++A D +DAV+ P+ E+
Sbjct: 62 LLADPD-----IDAVYIATPNALHAELAL 85
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 32.2 bits (74), Expect = 0.31
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 25/121 (20%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM--TADRKAGQSIGSVFPHLISQDLPTMVAV 122
R+ ++G G E+ + L+ +P G +++ DR + + + P L D V
Sbjct: 127 RVLIVGT-GEAAEELAKALSRNPALGYRVVGFVDDRPSDRVEVAGLPVLGKLDD----LV 181
Query: 123 KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPD 182
+ VD V LP L + +I+ L V + PD
Sbjct: 182 ELVRAHRVDEVIIALP----------LSEEARILRLLLQLEDLGVDVR--------LVPD 223
Query: 183 L 183
L
Sbjct: 224 L 224
>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport
and metabolism].
Length = 266
Score = 31.9 bits (73), Expect = 0.34
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAV 122
+++ + GASG G ++R + P ++L+ A DR S+GS L L +
Sbjct: 3 IKVAVAGASGRMGRTLIRAVLEAP--DLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVT 60
Query: 123 KDADFSNVDA 132
D DA
Sbjct: 61 DDLLLVKADA 70
>gnl|CDD|129992 TIGR00914, 2A0601, heavy metal efflux pump, CzcA family. This
model represents a family of H+/heavy metal cation
antiporters. This family is one of several subfamilies
within the scope of Pfam model pfam00873 [Cellular
processes, Detoxification, Transport and binding
proteins, Cations and iron carrying compounds].
Length = 1051
Score = 32.0 bits (73), Expect = 0.44
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 176 QPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQ------LPLVPLIQANLIQ 229
Q +APD +K A YG +S D+ NA N I+ L P ++
Sbjct: 193 QFLVAPDPEKLAAYG---LSLADVVNALERNNQNVGAGYIERRGEQYLVRAPGQVQSMDD 249
Query: 230 YRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYS 263
RNI+I GV R + E+ G +
Sbjct: 250 IRNIVIATGEGVPIRIRDVARVQIGKELRTGAAT 283
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 30.0 bits (68), Expect = 0.52
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 69 LGA-SGYTGAEIVRLLANHPYFGI-----KLMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
+G +G E+ RL G+ L A A ++G + D P + +
Sbjct: 8 IGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRI-TFVQGDAPDALDL 66
Query: 123 KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK 154
+ DAVF G E++ L LK
Sbjct: 67 LE----GFDAVFIGGGGGDLLELLDALASLLK 94
>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like
dehydrogenases. D-Mandelate dehydrogenase (D-ManDH),
identified as an enzyme that interconverts
benzoylformate and D-mandelate, is a D-2-hydroxyacid
dehydrogenase family member that catalyzes the
conversion of c3-branched 2-ketoacids. D-ManDH exhibits
broad substrate specificities for 2-ketoacids with large
hydrophobic side chains, particularly those with
C3-branched side chains. 2-hydroxyacid dehydrogenases
catalyze the conversion of a wide variety of D-2-hydroxy
acids to their corresponding keto acids. The general
mechanism is (R)-lactate + acceptor to pyruvate +
reduced acceptor. Glycerate dehydrogenase catalyzes the
reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH
+ H+. Formate/glycerate and related dehydrogenases of
the D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain.
Length = 321
Score = 31.0 bits (71), Expect = 0.74
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 121 AVKDADFSNVDAVFCCLPHGTTQ-------EIIKGLPKSLKIV 156
A+K+ + + A++ G+ E+I LP SLKI+
Sbjct: 40 ALKEGKYGDFVAIYR--TFGSAGETGPFDEELISPLPPSLKII 80
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 30.8 bits (70), Expect = 0.95
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 143 QEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPH 178
+E+I LP ++ V LSA + + E+ EW + H
Sbjct: 251 EEVIILLPDHVRFVFLSAT--VPNAEEFAEWIQRVH 284
>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
This family of proteins utilise NAD as a cofactor. The
proteins in this family use nucleotide-sugar substrates
for a variety of chemical reactions.
Length = 233
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA-D 126
+ G +G+ G+ +VR L Y I L R S+ + DL A++
Sbjct: 3 VTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSE--SLNTGRIRFHEGDLTDPDALERLLA 60
Query: 127 FSNVDAVF 134
DAV
Sbjct: 61 EVQPDAVI 68
>gnl|CDD|185068 PRK15113, PRK15113, glutathione S-transferase; Provisional.
Length = 214
Score = 29.9 bits (68), Expect = 1.2
Identities = 31/97 (31%), Positives = 35/97 (36%), Gaps = 40/97 (41%)
Query: 124 DADFSN--VDAVFCCLPHGTTQEIIKGLPKSLKIVDLSA--------------------- 160
DA F + V + F L QE KGLP LK VDL A
Sbjct: 11 DAHFFSPYVMSAFVAL-----QE--KGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ 63
Query: 161 --DFRLRDVS---EY-EEWYGQPHIAP----DLQKEA 187
DF L + S EY EE + P DLQ A
Sbjct: 64 HDDFELSESSAIAEYLEERFAPPAWERIYPADLQARA 100
>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B,
aka flavin reductase)-like proteins; atypical (a) SDRs.
Human BVR-B catalyzes pyridine nucleotide-dependent
production of bilirubin-IX beta during fetal
development; in the adult BVR-B has flavin and ferric
reductase activities. Human BVR-B catalyzes the
reduction of FMN, FAD, and riboflavin. Recognition of
flavin occurs mostly by hydrophobic interactions,
accounting for the broad substrate specificity.
Atypical SDRs are distinct from classical SDRs. BVR-B
does not share the key catalytic triad, or conserved
tyrosine typical of SDRs. The glycine-rich NADP-binding
motif of BVR-B is GXXGXXG, which is similar but not
identical to the pattern seen in extended SDRs.
Atypical SDRs generally lack the catalytic residues
characteristic of the SDRs, and their glycine-rich
NAD(P)-binding motif is often different from the forms
normally seen in classical or extended SDRs. Atypical
SDRs include biliverdin IX beta reductase (BVR-B,aka
flavin reductase), NMRa (a negative transcriptional
regulator of various fungi), progesterone
5-beta-reductase like proteins, phenylcoumaran benzylic
ether and pinoresinol-lariciresinol reductases,
phenylpropene synthases, eugenol synthase,
triphenylmethane reductase, isoflavone reductases, and
others. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving
as a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton
relay involving the conserved Tyr and Lys, a water
molecule stabilized by Asn, and nicotinamide. In
addition to the Rossmann fold core region typical of
all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids,
and typically have a TGXXGXXG cofactor binding motif.
Complex (multidomain) SDRs such as ketoreductase
domains of fatty acid synthase have a GGXGXXG
NAD(P)-binding motif and an altered active site motif
(YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 207
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 65 RIGLLGASGYTGAEIVR 81
+I ++GA+G TG+ IVR
Sbjct: 1 KIAIIGATGRTGSAIVR 17
>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs. Extended or
atypical short-chain dehydrogenases/reductases (SDRs,
aka tyrosine-dependent oxidoreductases) are distinct
from classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately 100
amino acids. Extended SDRs are a diverse collection of
proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. Atypical SDRs generally
lack the catalytic residues characteristic of the SDRs,
and their glycine-rich NAD(P)-binding motif is often
different from the forms normally seen in classical or
extended SDRs. Atypical SDRs include biliverdin IX beta
reductase (BVR-B,aka flavin reductase), NMRa (a negative
transcriptional regulator of various fungi),
progesterone 5-beta-reductase like proteins,
phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Complex
(multidomain) SDRs such as ketoreductase domains of
fatty acid synthase have a GGXGXXG NAD(P)-binding motif
and an altered active site motif (YXXXN). Fungal type
ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding
motif.
Length = 176
Score = 29.3 bits (66), Expect = 1.6
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 66 IGLLGASGYTGAEIVR--LLANHPYFGI-KLMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
I +LGA+G+ G + R L H + + K Q +V + AV
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKEDQEPVAVVEGDLRDLDSLSDAV 60
Query: 123 KDADFSNVDAVFCCL-PHGTTQEIIKGLPKSLK-IVDLSAD 161
+ VD V T++ + + + +++ + +
Sbjct: 61 QG-----VDVVIHLAGAPRDTRDFCEVDVEGTRNVLEAAKE 96
>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins,
NMRa-like, atypical (a) SDRs. TMR is an atypical
NADP-binding protein of the SDR family. It lacks the
active site residues of the SDRs but has a glycine rich
NAD(P)-binding motif that matches the extended SDRs.
Proteins in this subgroup however, are more similar in
length to the classical SDRs. TMR was identified as a
reducer of triphenylmethane dyes, important
environmental pollutants. This subgroup also includes
Escherichia coli NADPH-dependent quinine oxidoreductase
(QOR2), which catalyzes two-electron reduction of
quinone; but is unlikely to play a major role in
protecting against quinone cytotoxicity. Atypical SDRs
are distinct from classical SDRs. Atypical SDRs include
biliverdin IX beta reductase (BVR-B,aka flavin
reductase), NMRa (a negative transcriptional regulator
of various fungi), progesterone 5-beta-reductase like
proteins, phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 272
Score = 29.5 bits (67), Expect = 1.8
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---RKAGQSIGSVFPHLISQDLPTMVAV 122
I + GA+G G +V LL + + + KA + G D T+
Sbjct: 1 ILVTGATGKLGTAVVELLLAKVA-SVVALVRNPEKAKAFAADGVEVRQGDYDDPETLERA 59
Query: 123 KDADFSNVDAVF 134
F VD +
Sbjct: 60 ----FEGVDRLL 67
>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl
reductase.
Length = 390
Score = 29.3 bits (66), Expect = 2.5
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 29/151 (19%)
Query: 1 MSAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKS 60
+ AA +S S + G+ + ++ + + +
Sbjct: 9 LRAAAAASSSPSNRLA---------ASLGGALVRRAAAASRGSRATAAAAAQSFRSKEPK 59
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMV 120
+ V + +GA+GY G +VR L Y + + R+ G ++LP
Sbjct: 60 DVTVLV--VGATGYIGKFVVRELVRRGYNVVAV---AREKSGIRGKNGKEDTKKELP-GA 113
Query: 121 AVKDADFSN--------------VDAVFCCL 137
V D ++ VD V CL
Sbjct: 114 EVVFGDVTDADSLRKVLFSEGDPVDVVVSCL 144
>gnl|CDD|217277 pfam02901, PFL, Pyruvate formate lyase.
Length = 646
Score = 29.5 bits (67), Expect = 2.6
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 167 VSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQAN 226
+ + YG+ HI D ++ +YGL + E K +L A P +A
Sbjct: 147 FTGLPDAYGRGHIIGDYRRVLLYGLDGLIAE--KEEKLAALDLTDPEDADKIY----KAM 200
Query: 227 LIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAE 259
+I +I A+ R A+ A E+AE
Sbjct: 201 IISCDAVINYAE-------RYARLA---EELAE 223
>gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and
HSCARG (an NADPH sensor) like proteins, atypical (a)
SDRs. NmrA and HSCARG like proteins. NmrA is a negative
transcriptional regulator of various fungi, involved in
the post-translational modulation of the GATA-type
transcription factor AreA. NmrA lacks the canonical
GXXGXXG NAD-binding motif and has altered residues at
the catalytic triad, including a Met instead of the
critical Tyr residue. NmrA may bind nucleotides but
appears to lack any dehydrogenase activity. HSCARG has
been identified as a putative NADP-sensing molecule, and
redistributes and restructures in response to NADPH/NADP
ratios. Like NmrA, it lacks most of the active site
residues of the SDR family, but has an NAD(P)-binding
motif similar to the extended SDR family, GXXGXXG. SDRs
are a functionally diverse family of oxidoreductases
that have a single domain with a structurally conserved
Rossmann fold, an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Sequence
identity between different SDR enzymes is typically in
the 15-30% range; they catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Atypical SDRs
are distinct from classical SDRs. Classical SDRs have an
TGXXX[AG]XG cofactor binding motif and a YXXXK active
site motif, with the Tyr residue of the active site
motif serving as a critical catalytic residue (Tyr-151,
human 15-hydroxyprostaglandin dehydrogenase numbering).
In addition to the Tyr and Lys, there is often an
upstream Ser and/or an Asn, contributing to the active
site; while substrate binding is in the C-terminal
region, which determines specificity. The standard
reaction mechanism is a 4-pro-S hydride transfer and
proton relay involving the conserved Tyr and Lys, a
water molecule stabilized by Asn, and nicotinamide. In
addition to the Rossmann fold core region typical of all
SDRs, extended SDRs have a less conserved C-terminal
extension of approximately 100 amino acids, and
typically have a TGXXGXXG cofactor binding motif.
Complex (multidomain) SDRs such as ketoreductase domains
of fatty acid synthase have a GGXGXXG NAD(P)-binding
motif and an altered active site motif (YXXXN). Fungal
type ketoacyl reductases have a TGXXXGX(1-2)G
NAD(P)-binding motif.
Length = 242
Score = 29.2 bits (66), Expect = 2.7
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--RKAGQSIGSVFPHLISQDLPTMVAVK 123
I + GA+G G +VR L P F ++ +T D A +++ + ++ DL +++
Sbjct: 1 ILVFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAAKALAAPGVEVVQGDLDDPESLE 60
Query: 124 DADFSNVDAVFC 135
A V VF
Sbjct: 61 AA-LKGVYGVFL 71
>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar
epimerases [Cell envelope biogenesis, outer membrane /
Carbohydrate transport and metabolism].
Length = 275
Score = 29.1 bits (65), Expect = 2.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPY 88
+I + GA+G+ G +VR L +
Sbjct: 2 KILVTGATGFVGGAVVRELLARGH 25
>gnl|CDD|219193 pfam06824, DUF1237, Protein of unknown function (DUF1237). This
family contains a number of hypothetical proteins of
about 450 residues in length. Their function is unknown,
and most are bacterial. However, structurally this
family is part of the 6 hairpin glycosidase superfamily,
suggesting a glycosyl hydrolase function.
Length = 403
Score = 29.1 bits (66), Expect = 3.5
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 248 AKEAN-LYSEIAEGIYSYGVTRHR 270
A+EA L EI EGI YG+ H
Sbjct: 238 AEEAEKLADEIREGIEKYGIVEHP 261
>gnl|CDD|131072 TIGR02017, hutG_amidohyd, N-formylglutamate amidohydrolase. In
some species, histidine is converted to via urocanate
and then formimino-L-glutamate to glutamate in four
steps, where the fourth step is conversion of
N-formimino-L-glutamate to L-glutamate and formamide. In
others, that pathway from formimino-L-glutamate may
differ, with the next enzyme being formiminoglutamate
hydrolase (HutF) yielding N-formyl-L-glutamate. This
model represents the enzyme N-formylglutamate
deformylase, also called N-formylglutamate
amidohydrolase, which then produces glutamate [Energy
metabolism, Amino acids and amines].
Length = 263
Score = 28.6 bits (64), Expect = 4.0
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 77 AEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLP 117
AEI RL A H Y L A SI SV P L LP
Sbjct: 129 AEIERLRAQHGY--AVLYDA-----HSIRSVIPRLFEGKLP 162
>gnl|CDD|176803 cd08969, MeNeil3_N, N-terminal domain of metazoan Nei-like
glycosylase 3 (NEIL3). This family contains the
N-terminal domain of the Metazoan Neil3. It belongs to
the FpgNei_N, [N-terminal domain of Fpg
(formamidopyrimidine-DNA glycosylase, MutM)_Nei
(endonuclease VIII)] domain superfamily. DNA
glycosylases maintain genome integrity by recognizing
base lesions created by ionizing radiation, alkylating
or oxidizing agents, and endogenous reactive oxygen
species. They initiate the base-excision repair
process, which is completed with the help of enzymes
such as phosphodiesterases, AP endonucleases, DNA
polymerases and DNA ligases. DNA glycosylases cleave
the N-glycosyl bond between the sugar and the damaged
base, creating an AP (apurinic/apyrimidinic) site. Most
FpgNei DNA glycosylases use their N-terminal proline
residue as the key catalytic nucleophile, and the
reaction proceeds via a Schiff base intermediate. In
contrast, mouse NEIL3 (MmuNEIL3) forms a Schiff base
intermediate via its N-terminal valine. The latter is a
functional DNA glycosylase in vitro and in vivo.
MmuNEIL3 prefers lesions in single-stranded DNA and in
bubble structures. In duplex DNA, it recognizes the
oxidized purines spiroiminodihydantoin (Sp),
guanidinohydantoin (Gh),
2,6-diamino-4-hydroxy-5-formamidopyrimidine (FapyG) and
4,6-diamino-5-formamidopyrimidine (FapyA), but not
8-oxo-7,8-dihydroguanine (8-oxoG). Since the expression
of the MmuNeil3 glycosylase domain (MmuNeil3delta324)
reduces both the high spontaneous mutation frequency
and the FapyG level in a Escherichia coli mutant
lacking Fpg, Nei and MutY glycosylase activites, NEIL3
may play a role in repairing FapyG in vivo. In
addition to this MeNeil3_N domain, enzymes belonging to
this family contain a helix-two turn-helix (H2TH)
domain and a zinc finger motif, plus a characteristic
C-terminal extension that contains additional zinc
fingers. Neil3 is one of three homologs found in
eukaryotes.
Length = 140
Score = 27.8 bits (62), Expect = 4.4
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 26 RVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKSEKQVRIGLLGASGYTGAEIV-RLLA 84
RV KG ++ +RGSA +G K E+ + L YTG E + + L
Sbjct: 17 RVEKGQ---RVVHVRGSAPSSPSGAASRNGAGSKDERSHVLDSLTGQVYTGVETLGKELF 73
Query: 85 NHPYFGIK 92
YFG K
Sbjct: 74 M--YFGDK 79
>gnl|CDD|225722 COG3181, COG3181, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 319
Score = 28.0 bits (63), Expect = 7.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 115 DLPTMV-AVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFR 163
D+PT+ D S VF P GT EII L +LK S +++
Sbjct: 232 DVPTLKEQGYDVVMSIWRGVF--APAGTPDEIIAKLSAALKKALASPEWQ 279
>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup
contains atypical SDRs, some of which are identified as
putative NAD(P)-dependent epimerases, one as a putative
NAD-dependent epimerase/dehydratase. Atypical SDRs are
distinct from classical SDRs. Members of this subgroup
have a glycine-rich NAD(P)-binding motif that is very
similar to the extended SDRs, GXXGXXG, and binds NADP.
Generally, this subgroup has poor conservation of the
active site tetrad; however, individual sequences do
contain matches to the YXXXK active site motif, the
upstream Ser, and there is a highly conserved Asp in
place of the usual active site Asn throughout the
subgroup. Atypical SDRs generally lack the catalytic
residues characteristic of the SDRs, and their
glycine-rich NAD(P)-binding motif is often different
from the forms normally seen in classical or extended
SDRs. Atypical SDRs include biliverdin IX beta
reductase (BVR-B,aka flavin reductase), NMRa (a
negative transcriptional regulator of various fungi),
progesterone 5-beta-reductase like proteins,
phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane
reductase, isoflavone reductases, and others. SDRs are
a functionally diverse family of oxidoreductases that
have a single domain with a structurally conserved
Rossmann fold, an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Sequence
identity between different SDR enzymes is typically in
the 15-30% range; they catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase numbering). In addition to the Tyr and
Lys, there is often an upstream Ser and/or an Asn,
contributing to the active site; while substrate
binding is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. In addition to the Rossmann fold
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately
100 amino acids, and typically have a TGXXGXXG cofactor
binding motif. Complex (multidomain) SDRs such as
ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 203
Score = 27.6 bits (62), Expect = 7.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPY 88
++ ++GA+G G +VR L + Y
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRGY 24
>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction
only].
Length = 1024
Score = 27.8 bits (62), Expect = 8.9
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 22/112 (19%)
Query: 106 SVFPHLISQDLPTMVAVKDADFS--NVD----AVFCC--LPHGTTQ---EIIKGLPKSLK 154
SVF ++S DLP+ K+ D S NVD L + ++ K L +S
Sbjct: 674 SVFKAILSSDLPSPPLQKEVDISKKNVDIIKSESKISNVLFKNSEGLSPDLNKTLLESAL 733
Query: 155 IVDLSADFRLRDVSE---------YEEWYGQPHIAPDL--QKEAVYGLTEIS 195
R ++ E + + KE V G ++
Sbjct: 734 DSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKELVIGCSDNL 785
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,297,576
Number of extensions: 1459604
Number of successful extensions: 1283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1253
Number of HSP's successfully gapped: 56
Length of query: 306
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 209
Effective length of database: 6,635,264
Effective search space: 1386770176
Effective search space used: 1386770176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)