RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021865
(306 letters)
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural
genomics, protein structure initiative, CENT eukaryotic
structural genomics; 2.19A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Length = 359
Score = 420 bits (1083), Expect = e-149
Identities = 204/251 (81%), Positives = 225/251 (89%)
Query: 49 SLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF 108
S +V + K EK +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVF
Sbjct: 2 SFRVSASSSVKPEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVF 61
Query: 109 PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVS 168
PHL +Q LPT+V+VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++
Sbjct: 62 PHLRAQKLPTLVSVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIA 121
Query: 169 EYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
EYEEWYGQPH A +LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI
Sbjct: 122 EYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLI 181
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT 288
++ NIIIDAKSGVSGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVT
Sbjct: 182 KHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVT 241
Query: 289 VSFTPHLMPMV 299
VSFTPHLMPM+
Sbjct: 242 VSFTPHLMPMI 252
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.1
Length = 351
Score = 388 bits (999), Expect = e-136
Identities = 106/242 (43%), Positives = 148/242 (61%), Gaps = 3/242 (1%)
Query: 58 QKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLP 117
+R G++GA+GYTG E+VRLL NHP I +++ AG+ + +FP + +
Sbjct: 8 HHHHHMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSIL 67
Query: 118 TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQP 177
+ + N D +F LP G + ++++ L +KI+DL ADFR D Y EWYG+
Sbjct: 68 SEFDPEKVS-KNCDVLFTALPAGASYDLVRELKG-VKIIDLGADFRFDDPGVYREWYGKE 125
Query: 178 HIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDA 237
+ K VYGL E+ RE+IKNA++V NPGCYPTS+ L L P ++ NL+ I++DA
Sbjct: 126 LSGYENIK-RVYGLPELHREEIKNAQVVGNPGCYPTSVILALAPALKHNLVDPETILVDA 184
Query: 238 KSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMP 297
KSGVSGAGR K L+SE+ E + Y V +HRHVPE+EQ L + KV V FTPHL+P
Sbjct: 185 KSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELGKISGKKVNVVFTPHLVP 244
Query: 298 MV 299
M
Sbjct: 245 MT 246
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid
biosynthesis, structural genomics, riken structur
genomics/proteomics initiative; 2.01A {Thermus
thermophilus}
Length = 345
Score = 372 bits (958), Expect = e-130
Identities = 77/239 (32%), Positives = 111/239 (46%), Gaps = 8/239 (3%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+ + ++GASGY G E +RL +HPY +K +T+ R AG+ + V P+L + +
Sbjct: 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNL--RGRTNLKF 60
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPHIA 180
V D + LPHG +VDLSADFRL+D Y +YG H
Sbjct: 61 VPPEKLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYG-EHPR 119
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
PDL VY + E+ RE +K A +A GC T+ L L PL++A +++ I +
Sbjct: 120 PDLLGRFVYAVPELYREALKGADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLLIS 179
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMV 299
S G A A+ + E A I Y T HRH E+ + L + V T V
Sbjct: 180 TSAGGAEASPASHHPERAGSIRVYKPTGHRHTAEVVENL----PGRPEVHLTAIATDRV 234
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer,
rossmann fold, structural genomics, PSI, protein
structure initiative; 1.58A {Mycobacterium tuberculosis}
PDB: 2i3a_A* 2i3g_A
Length = 352
Score = 364 bits (937), Expect = e-126
Identities = 92/252 (36%), Positives = 129/252 (51%), Gaps = 14/252 (5%)
Query: 56 KTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFG-----IKLMTADRKAGQSIGSVFPH 110
+ ++ ++ + GASGY G EI+RLL HP + I +TA AG ++G PH
Sbjct: 2 QNRQVANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPH 61
Query: 111 LISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY 170
L + + A DAVF LPHG + + + L I+D ADFRL D + +
Sbjct: 62 LTPLAHRVVEPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVW 121
Query: 171 EEWYGQPHIAPDLQKEAVYGLTEIS--REDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
E +YG H YGL E+ R+ ++ R +A PGCYPT+ L L P + A+LI
Sbjct: 122 ERFYGSSH-----AGSWPYGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLI 176
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKV 287
+ + + A SG SGAGR A L +E+ +Y + HRH PEI QGL V
Sbjct: 177 E-PAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDV 235
Query: 288 TVSFTPHLMPMV 299
+VSFTP L+P
Sbjct: 236 SVSFTPVLIPAS 247
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC,
essential gene, amino-acid biosynthesis, arginine
biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella
flexneri} PDB: 2g17_A
Length = 337
Score = 355 bits (914), Expect = e-123
Identities = 92/247 (37%), Positives = 128/247 (51%), Gaps = 15/247 (6%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQ-D 115
S + ++GASGY GAE+V + HP+ I +T + AG+ I + P L +
Sbjct: 1 SNAMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVE 60
Query: 116 LPTMVAVKDADF-SNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEW 173
LP ++F VD VF H + ++ + DLS FR+ D + YE++
Sbjct: 61 LPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKY 120
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRN- 232
YG H P+L ++A YGL E +K A L+A PGCYPT+ QL L PLI A+L+
Sbjct: 121 YGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQW 180
Query: 233 IIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFT 292
+I+A SGVSGAGR A +N + E++ + YGV HRH PEI L V FT
Sbjct: 181 PVINATSGVSGAGRKAAISNSFCEVS--LQPYGVFTHRHQPEIATHL------GADVIFT 232
Query: 293 PHLMPMV 299
PHL
Sbjct: 233 PHLGNFP 239
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 75.3 bits (186), Expect = 1e-15
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLP--- 117
++++ LLG++G G ++V++LA HPY + ++A K G+ + D+P
Sbjct: 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEV 62
Query: 118 ---TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLR-DVSEYEE 172
+V+ D +VD V LP+ + I L K+ KIV ++ FR+ DV
Sbjct: 63 QDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDV----- 117
Query: 173 WYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLIQANLIQY 230
P I P++ E + L LV NP C T+ + P+ PLI+
Sbjct: 118 ----PLINPEINWEHLELLKFQKERKGWKGILVKNPNC--TAAIMSMPIKPLIEIATK-- 169
Query: 231 RNIIIDAKSGVSGAGRGAKEA 251
III VSGAG
Sbjct: 170 SKIIITTLQAVSGAGYNGISF 190
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 75.3 bits (186), Expect = 1e-15
Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 57 TQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQD 115
++ + ++++G+LGA+G G V+LLA+HP F + + A +R AG+ +D
Sbjct: 2 SKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRD 61
Query: 116 LPTMVA--------VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLR- 165
+P + K +F +VD VF LP ++ K K++ ++ +R+
Sbjct: 62 IPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEE 121
Query: 166 DVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLI 223
DV P + P++ + + + + + ++ NP C ++I L P++
Sbjct: 122 DV---------PLVIPEVNADHLELIEIQREKRGWDGAIITNPNC--STICAVITLKPIM 170
Query: 224 QANLIQYRNIIIDAKSGVSGAGRGAKEA 251
+ + I VSGAG +
Sbjct: 171 DKFGL--EAVFIATMQAVSGAGYNGVPS 196
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 71.6 bits (176), Expect = 3e-14
Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 33/215 (15%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMV 120
+ G+LGA+G G + LL+ HP F I + A R AG+ ++ LP
Sbjct: 18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETE 77
Query: 121 A---VKDA----DFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLR-DVSEYE 171
V++ +F D VF L +I K ++ V + ++R DV
Sbjct: 78 QDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDV---- 133
Query: 172 EWYGQPHIAP-----DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLIQ 224
P + P + +S+ K ++ C ++ L PL PL++
Sbjct: 134 -----PLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNC--STAGLVAPLKPLVE 186
Query: 225 ANLIQYRNIIIDAKSGVSGAGRGAKEANLYS-EIA 258
+ +SGAG + +I
Sbjct: 187 K-FGPIDALTTTTLQAISGAG---FSPGVSGMDIL 217
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 48.2 bits (116), Expect = 1e-06
Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 45/199 (22%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSI---GSVFPHLISQDL 116
+Q + + GA+G G ++ +L P + L+ ++R G++ G
Sbjct: 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTV-------- 53
Query: 117 PTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRLR-DVSEYE 171
+ V++ D+S V + + P + + ++D ++ FR D+
Sbjct: 54 -RVQNVEEFDWSQVHIALFSAGGELSAKW---APIAAEAGVVVIDNTSHFRYDYDI---- 105
Query: 172 EWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLIQANLIQ 229
P + P++ EA+ + +N ++ANP C ++IQ+ L P+ A I
Sbjct: 106 -----PLVVPEVNPEAI--------AEFRNRNIIANPNC--STIQMLVALKPIYDAVGI- 149
Query: 230 YRNIIIDAKSGVSGAGRGA 248
I + VSGAG+
Sbjct: 150 -ERINVTTYQSVSGAGKAG 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 5e-06
Identities = 42/243 (17%), Positives = 73/243 (30%), Gaps = 103/243 (42%)
Query: 104 IGS----VFPHL-----ISQD-------LPT-MVAVKDAD----FSNVDAVFCCLPH--- 139
IG +P+ I +D +P+ M+++ + V+ LP
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 140 -------GTTQEIIKGLPKSLKIVDLSADFRLRDV---SEYEEW---YGQ---------- 176
G ++ G P+SL ++L LR S ++ + +
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNL----TLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 177 ----P-H----------IAPDLQKEAVYGLTEISREDIK----------NARLVANPGCY 211
P H I DL K V + +DI+ + R+++
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNV----SFNAKDIQIPVYDTFDGSDLRVLS----- 472
Query: 212 PTSIQLPLVPLI--------QANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYS 263
SI +V I + +I+ G SG G L +G
Sbjct: 473 -GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG------VLTHRNKDG--- 522
Query: 264 YGV 266
GV
Sbjct: 523 TGV 525
Score = 34.3 bits (78), Expect = 0.065
Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 58/172 (33%)
Query: 1 MSAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKS 60
MS + + F RG + PR G + +I +V +Q++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAV---PRDELGRSNYGMIAINPG--------RVAASFSQEA 1825
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPT 118
+ V + +G+ EIV N+ Q V + DL
Sbjct: 1826 LQYVVERVGKRTGWL-VEIV----NYNVE-------------NQQY--V----AAGDL-- 1859
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSE 169
+D V ++ + + + I++L L +V
Sbjct: 1860 ---------RALDTV---------TNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 28.9 bits (64), Expect = 3.1
Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 61/219 (27%)
Query: 113 SQ------DL-PTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRL 164
SQ DL T A +D ++ D F + +I+ P +L I R+
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDV-WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 165 RD---VSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSI-QLPLV 220
R+ +E + KE T + K T Q
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL-------LSATQFTQ---- 1733
Query: 221 PLIQA-NLIQYRNI----IIDAKSGVSGAGR--GAKEANLYS---------EIAEGIYSY 264
P + + ++ +I A + AG G E Y+ I +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATF--AGHSLG--E---YAALASLADVMSIESLVE-- 1784
Query: 265 GVTRHR------HVPEIEQGLTGFA-----SSKVTVSFT 292
V +R VP E G + + +V SF+
Sbjct: 1785 -VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 46.3 bits (111), Expect = 5e-06
Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 44/198 (22%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSI---GSVFPHLISQDL 116
+ + + ++GA+G G +V LL + P + L+ + AGQ + S
Sbjct: 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSL-------- 56
Query: 117 PTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRLRDVSEYEE 172
+ V DFS+V F ++ ++ ++DLS
Sbjct: 57 -RVGDVDSFDFSSVGLAFFAAAAEVSRAH---AERARAAGCSVIDLSGALEPSVA----- 107
Query: 173 WYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLIQANLIQY 230
P + + E + L+++P + +L L PL+
Sbjct: 108 ----PPVMVSVNAERL--------ASQAAPFLLSSPCA--VAAELCEVLAPLLATLDC-- 151
Query: 231 RNIIIDAKSGVSGAGRGA 248
R + + A VS GR
Sbjct: 152 RQLNLTACLSVSSLGREG 169
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 43.1 bits (102), Expect = 3e-05
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
R+ L GA+G TG ++ + + P K++ RKA + + + +
Sbjct: 7 RVLLAGATGLTGEHLLDRILSEPTL-AKVIAPARKALAEH-----PRLDNPVGPLAELLP 60
Query: 125 ADFSNVDAVFCCLPHGTTQE 144
++D FCCL GTT +
Sbjct: 61 QLDGSIDTAFCCL--GTTIK 78
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 41.9 bits (98), Expect = 8e-05
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT---ADRKAGQSIGSVFPHLISQDLPTMVA 121
I +LGA+G + L + I L R + I +I
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66
Query: 122 VKDADFSNVDAVFCCLPHGTTQ 143
++ A +N + VF +
Sbjct: 67 LEQA-VTNAEVVFVGAMESGSD 87
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 42.1 bits (100), Expect = 1e-04
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 65 RIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
+ ++GA+G GA+++++L P I+ + + R AG+S+ F QD+ T+
Sbjct: 4 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFK---DQDI-TIEET 57
Query: 123 KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRL-RDVSEYEEWYGQP 177
+ F VD T+ + P ++K +VD ++ FR DV P
Sbjct: 58 TETAFEGVDIALFSAGSSTSAKY---APYAVKAGVVVVDNTSYFRQNPDV---------P 105
Query: 178 HIAPDLQKEAVYGLTEISREDIKNAR-LVANPGCYPTSIQL--PLVPLIQANLIQYRNII 234
+ P E++ + ++A P C ++IQ+ L P+ Q + II
Sbjct: 106 LVVP-----------EVNAHALDAHNGIIACPNC--STIQMMVALEPVRQKWGL--DRII 150
Query: 235 IDAKSGVSGAGRGA 248
+ VSGAG GA
Sbjct: 151 VSTYQAVSGAGMGA 164
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 41.0 bits (97), Expect = 3e-04
Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 61/208 (29%)
Query: 64 VRIGLLGASGYTGAEIV-RLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMV 120
+R+GL+G G G+ ++ R++ + + + + P+
Sbjct: 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA-----PNFGKDAGMLHD 55
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK------IVDLSADFRLR-DVSEYEEW 173
A +DAV C T+++ P + +D ++ R+ +
Sbjct: 56 AFDIESLKQLDAVITCQGGSYTEKV---YPALRQAGWKGYWIDAASTLRMDKEA------ 106
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNA-----RLVANPGCYPTSIQL--PLVPLIQAN 226
++ + I + + C T + L L +
Sbjct: 107 ---IITLD-----------PVNLKQILHGIHHGTKTFVGGNC--TVSLMLMALGGLYERG 150
Query: 227 LIQ------YRNIIIDAKSGVSGAGRGA 248
L++ Y+ SGAG
Sbjct: 151 LVEWMSAMTYQ--------AASGAGAQN 170
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 40.2 bits (94), Expect = 4e-04
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 68 LLGASGYTGAEIVRLLANHPYFG-IKLMTADRKAGQSIGSVFPHLISQ--DLPTMVAVKD 124
+LGASG TG +++ + F + L+ R+ + ++ + D +
Sbjct: 23 ILGASGETGRVLLKEILEQGLFSKVTLIG--RRKLTFDEEAYKNVNQEVVDFEKLDDYAS 80
Query: 125 ADFSNVDAVFCCLPHGTTQE 144
A F D FCCL GTT+
Sbjct: 81 A-FQGHDVGFCCL--GTTRG 97
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 40.1 bits (95), Expect = 6e-04
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 44/197 (22%)
Query: 64 VRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+R+ ++GA+G G EI+++L N P ++L + R AG + F +++ +
Sbjct: 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRL--AFR---GEEI-PVEP 54
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRL-RDVSEYEEWYGQ 176
+ + VD V G ++ + +VD S+ +R V
Sbjct: 55 LPEGPLP-VDLVLASAGGGISRAK---ALVWAEGGALVVDNSSAWRYEPWV--------- 101
Query: 177 PHIAPDLQKEAVYGLTEISREDIKNAR-LVANPGCYPTSIQL--PLVPLIQANLIQYRNI 233
P + P E++RE I R ++ANP C T+ L L PL +A + +
Sbjct: 102 PLVVP-----------EVNREKIFQHRGIIANPNC--TTAILAMALWPLHRAFQA--KRV 146
Query: 234 IIDAKSGVSGAGRGAKE 250
I+ SGAG A E
Sbjct: 147 IVATYQAASGAGAKAME 163
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 39.9 bits (94), Expect = 6e-04
Identities = 32/207 (15%), Positives = 58/207 (28%), Gaps = 61/207 (29%)
Query: 65 RIGLLGASGYTGAEIVRLLA---NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+GL+G G G+ +++ + + + G++ P + A
Sbjct: 6 NVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKA-----PSFAKNETTLKDA 60
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK------IVDLSADFRL-RDVSEYEEWY 174
D D + C T ++ PK +D ++ R+ D
Sbjct: 61 TSIDDLKKCDVIITCQGGDYTNDV---FPKLRAAGWNGYWIDAASSLRMKDDA------- 110
Query: 175 GQPHIAPDLQKEAVYGLTEISREDIKNAR-----LVANPGCYPTSIQL--PLVPLIQANL 227
I ++ IK+A C T + L L + NL
Sbjct: 111 --VIILD-----------PVNLNVIKDALVNGTKNFIGGNC--TVSLMLMALGGLFRENL 155
Query: 228 IQ------YRNIIIDAKSGVSGAGRGA 248
+ Y+ SGAG
Sbjct: 156 VDWMTAMTYQ--------AASGAGAQN 174
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 39.4 bits (92), Expect = 7e-04
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+ +LGA G ++ LA+ L +I D+ A+K
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQ 84
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGL 149
A D V+ L +
Sbjct: 85 A-MQGQDIVYANLTGEDLDIQANSV 108
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 39.9 bits (94), Expect = 8e-04
Identities = 27/201 (13%), Positives = 56/201 (27%), Gaps = 49/201 (24%)
Query: 65 RIGLLGASGYTGAEIV-RLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+G +G G G+ ++ R++ + + + + P A
Sbjct: 3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-----PSFGGTTGTLQDA 57
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK------IVDLSADFRLR-DVSEYEEWY 174
+D + C T EI PK + +D ++ R++ D
Sbjct: 58 FDLEALKALDIIVTCQGGDYTNEI---YPKLRESGWQGYWIDAASSLRMKDDA------- 107
Query: 175 GQPHIAPDLQKEAVYGLTEISREDIKNAR-----LVANPGCYPTSIQL--PLVPLIQANL 227
I ++++ I + C T + L L +L
Sbjct: 108 --IIILD-----------PVNQDVITDGLNNGIRTFVGGNC--TVSLMLMSLGGLFANDL 152
Query: 228 IQYRNIIIDAKSGVSGAGRGA 248
+ + + SG G
Sbjct: 153 V--DWVSVATYQAASGGGARH 171
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 37.5 bits (87), Expect = 0.001
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
I ++GA G G I LL + + + D A + + D +
Sbjct: 7 NICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAK 65
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSAD 161
A DAV P T I K + DL+ D
Sbjct: 66 A-LGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTED 102
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 38.3 bits (90), Expect = 0.002
Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 45/197 (22%)
Query: 64 VRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+ IG++GA+G G + LL + P ++ + R G+ + F Q++ +
Sbjct: 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKL--AFR---GQEI-EVED 55
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRL-RDVSEYEEWYGQ 176
+ AD S +D ++ P+ ++D S+ +R DV
Sbjct: 56 AETADPSGLDIALFSAGSAMSKVQ---APRFAAAGVTVIDNSSAWRKDPDV--------- 103
Query: 177 PHIAPDLQKEAVYGLTEISREDIKNAR---LVANPGCYPTSIQL--PLVPLIQANLIQYR 231
P + E++ E + R ++ANP C T++ L L +
Sbjct: 104 PLVVS-----------EVNFERDAHRRPKGIIANPNC--TTMAAMPVLKVLHDEARL--V 148
Query: 232 NIIIDAKSGVSGAGRGA 248
+++ + VSG+G
Sbjct: 149 RLVVSSYQAVSGSGLAG 165
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 37.4 bits (87), Expect = 0.004
Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 14/144 (9%)
Query: 12 SRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVE---DGKTQKSEKQVRIGL 68
+R + R SG + G++ +PT + +++ +
Sbjct: 29 NRRALVGGGVGLAARGALASGLQAATLPAGASQVPTTPAGRPMPYAIRPMPEDRRFGYAI 88
Query: 69 LGASGYTGAEIVRLLANHPYFGIK-LMTADRKAGQSIGSVF-----PHLISQDLPTMVAV 122
+G Y +I+ A + I+ L++ + + + + + + + +
Sbjct: 89 VGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKD 148
Query: 123 KDADFSNVDAVFCCLPHGTTQEII 146
+DAV+ LP+ E
Sbjct: 149 PK-----IDAVYIILPNSLHAEFA 167
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 37.2 bits (86), Expect = 0.004
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
RI L+GA+GY G + + + + L+ R++ S S L+ + +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLV---RESTASSNSEKAQLLESFKASGANIVH 62
Query: 125 ADFSN----------VDAVFCCLPHGTTQE 144
+ VD V + +
Sbjct: 63 GSIDDHASLVEAVKNVDVVISTVGSLQIES 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 21/164 (12%), Positives = 41/164 (25%), Gaps = 55/164 (33%)
Query: 157 DLSADFRLRDVS----------EYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVA 206
+F +DV E + L K +V
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-----AVSGTLRLFWTLLS--KQEEMVQ 80
Query: 207 -------NPGCYP---TSIQL-PLVP-LIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY 254
Y + I+ P ++ I+ R+ LY
Sbjct: 81 KFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRD-------------------RLY 120
Query: 255 SEIAEGIYSYGVTRHRHVPEIEQGLTGFASSK-VTVSFTPHLMP 297
++ + Y V+R + ++ Q L +K V + +
Sbjct: 121 NDN-QVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----DGVL 159
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 36.4 bits (85), Expect = 0.007
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 29/122 (23%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRK--------AGQSIGSVFPHLI 112
++I + GASG G ++ + P L+ A DR AG +G +
Sbjct: 6 SSMKIAIAGASGRMGRMLIEAVLAAP--DATLVGALDRTGSPQLGQDAGAFLGKQTGVAL 63
Query: 113 SQDLPTMVAVKDA--DFSNVDAVFCCL--------PH--GTT------QEIIKGLPKSLK 154
+ D+ + A D DF+ + L GTT + ++ + +
Sbjct: 64 TDDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIA 123
Query: 155 IV 156
+V
Sbjct: 124 LV 125
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 36.0 bits (84), Expect = 0.009
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 30/125 (24%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHL------- 111
+ +R+ + GA G G ++++ G++L A +R+ +GS L
Sbjct: 2 HDANIRVAIAGAGGRMGRQLIQAALALE--GVQLGAALEREGSSLLGSDAGELAGAGKTG 59
Query: 112 --ISQDLPTMVAVKDA--DFSNVDAVFCCL--------PH--GTT------QEIIKGLPK 151
+ L + D DF+ + L GTT ++ I+
Sbjct: 60 VTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAA 119
Query: 152 SLKIV 156
+ IV
Sbjct: 120 DIAIV 124
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 36.4 bits (84), Expect = 0.009
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+I +LG +G G IV L+ + + LI V + +
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVR--KTITAANPETKEELIDNYQSLGVILLE 61
Query: 125 ADFSN----------VDAVFCCLPHGTTQE 144
D ++ VD V C ++
Sbjct: 62 GDINDHETLVKAIKQVDIVICAAGRLLIED 91
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 36.1 bits (83), Expect = 0.010
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 14/95 (14%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM 119
S + +I + G +GY G +VR + + R L +
Sbjct: 2 SHME-KIIIYGGTGYIGKFMVRASLSFSHPTFIYA---RPLTPDSTPSSVQLREEFRSMG 57
Query: 120 VAVKDADFSN----------VDAVFCCLPHGTTQE 144
V + + + VD V LP
Sbjct: 58 VTIIEGEMEEHEKMVSVLKQVDIVISALPFPMISS 92
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 35.7 bits (82), Expect = 0.012
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 27/156 (17%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
R+ ++G +GY G IV + + L + + + + + +
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLG----AKLIE 61
Query: 125 ADFSN----------VDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY---- 170
A + VD V L G I K ++ + + + + SE+
Sbjct: 62 ASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDP 121
Query: 171 --EEWYGQPHIAPDLQKEAVYGLTEISREDIKNARL 204
E QP + K V R I+ A +
Sbjct: 122 DIMEHALQPGSITFIDKRKV-------RRAIEAASI 150
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 35.0 bits (81), Expect = 0.023
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKL---MTADRKAGQSIGSVFPHL-ISQD 115
S +++GL+G ++ L I++ +D + + + + + +
Sbjct: 2 SLSLIKVGLVGIGAQMQENLLPSLLQMQ--DIRIVAACDSDLERARRVHRFISDIPVLDN 59
Query: 116 LPTMVAVKDADFSNVDAVFCCLPHGT 141
+P M+ +DAV P
Sbjct: 60 VPAMLNQVP-----LDAVVMAGPPQL 80
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 34.2 bits (79), Expect = 0.033
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 65 RIGLLGASGYTGAEIVRLL--ANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
+I + GA+G TG + A + + ++ D S G H++ D+ V
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYE---VTVLVRDSSRLPSEGPRPAHVVVGDVLQAADV 61
Query: 123 KDADFSNVDAVFCCLPHG 140
+ DAV L
Sbjct: 62 DKT-VAGQDAVIVLLGTR 78
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 34.1 bits (78), Expect = 0.050
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM---TADRKAGQSIGSVFPHLISQDLPTMVA 121
+I + G +GY G +V+ + ++ S+ ++ +L
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEK 72
Query: 122 VKDADFSNVDAVFCCLPHGTTQE 144
+ + VD V L +
Sbjct: 73 LVEL-MKKVDVVISALAFPQILD 94
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 33.7 bits (77), Expect = 0.052
Identities = 11/92 (11%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSV--FPHLISQD 115
+ + + ++G G G+ +R L + + + + +GS+ + +D
Sbjct: 3 TNSGKFGVVVVGV-GRAGSVRLRDLKDPR--SAAFLNLIGFVSRRELGSLDEVRQISLED 59
Query: 116 LPTMVAVKDADFSNVDAVFCCLPHGTTQEIIK 147
++ + +D + C + ++ I+
Sbjct: 60 A-----LRSQE---IDVAYICSESSSHEDYIR 83
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 33.3 bits (76), Expect = 0.079
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 60 SEKQVRIGLLGASGYTGAEIVR-LLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT 118
S + + GASG TG + + L F K + + + IG + D+
Sbjct: 1 SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-ADVFIGDITD 59
Query: 119 MVAVKDADFSNVDAVFCC 136
++ A F +DA+
Sbjct: 60 ADSINPA-FQGIDALVIL 76
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 33.2 bits (76), Expect = 0.082
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 57 TQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQD 115
+S + + ++G + + +A + KL+ TA R + +
Sbjct: 19 YFQSMSPINLAIVGVGKIVRDQHLPSIAKNA--NFKLVATASRHGTVEGVNSYT-----T 71
Query: 116 LPTMVAVKDADFSNVDAVFCCLPHGT 141
+ M+ DA+ ++DAV C+P
Sbjct: 72 IEAML---DAE-PSIDAVSLCMPPQY 93
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 33.1 bits (76), Expect = 0.083
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT---ADRKAGQSIGSVFPHLISQDL 116
+ VR+ L+GA G G +R +A P G L+ ++ + I D
Sbjct: 7 NNSPVRLALIGA-GRWGKNYIRTIAGLP--GAALVRLASSNPDNLALVPPGCV--IESDW 61
Query: 117 PTMVAVKDADFSNVDAVFCCLPHGTTQEIIK 147
++V+ + V+AV P T EI
Sbjct: 62 RSVVSAPE-----VEAVIIATPPATHAEITL 87
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 33.0 bits (76), Expect = 0.090
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 30/123 (24%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHL--------- 111
+R+ ++GA+G G E++ + ++L RK + L
Sbjct: 20 GSMRLTVVGANGRMGRELITAIQRRK--DVELCAVLVRKGSSFVDKDASILIGSDFLGVR 77
Query: 112 ISQDLPTMVAVKDA--DFSNVDAVFCCL--------PH--GTT------QEIIKGLPKSL 153
I+ D + + + DFS A H GTT + I K
Sbjct: 78 ITDDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKYT 137
Query: 154 KIV 156
IV
Sbjct: 138 TIV 140
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 33.2 bits (75), Expect = 0.100
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 70 GASGYTGAEIVRLLANHPYFGI--KLMTADRKAGQSIGSVFP-HLISQDL--PTMVAVKD 124
G +G G + +L G K+ R+ + P + + D+ P K
Sbjct: 8 GVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKL 67
Query: 125 ADFSNVDAVF 134
+ ++V VF
Sbjct: 68 SPLTDVTHVF 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.11
Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 23/51 (45%)
Query: 143 QEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTE 193
Q + K L SLK+ Y AP L A+ E
Sbjct: 20 QAL-KKLQASLKL--------------YA-----DDSAPAL---AIKATME 47
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 32.4 bits (74), Expect = 0.12
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-----DRKAGQSIGSVFPHLISQD 115
EK +I L+GASG+ G+ ++ N + +TA ++ ++ + D
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFE----VTAVVRHPEKIKIENEH---LKVKKAD 54
Query: 116 LPTMVAVKDADFSNVDAVFCCLPHGTTQE 144
+ ++ V + DAV G
Sbjct: 55 VSSLDEVCEV-CKGADAVISAFNPGWNNP 82
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 31.9 bits (72), Expect = 0.21
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 65 RIGLLGASGYTGAEIVRLLANH 86
+IG++GA+G G+ I+ N
Sbjct: 2 KIGIIGATGRAGSRILEEAKNR 23
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 31.5 bits (71), Expect = 0.27
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+I +LGA+G G+ IV G +++ R + ++ + + + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRR---GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTE 57
Query: 125 ADFSNVDAVFCCLPHGTT 142
AD +VDAV L
Sbjct: 58 ADLDSVDAVVDALSVPWG 75
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 31.5 bits (72), Expect = 0.30
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 121 AVKDADFSNVDAVFCCLPHGTTQ------EIIKGLPKSLKIV 156
A+++ + + +A+ T+ ++I LP SLK+
Sbjct: 43 ALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVF 84
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 31.2 bits (71), Expect = 0.34
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 69 LGASGYTGAEIVRLLANHPYFGIKLMT--ADRKAGQSIGSVFPHLISQDLPTMVAVKDAD 126
G +G G + R L F ++++T +KA + + ++ D V ++ A
Sbjct: 11 FGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELA- 69
Query: 127 FSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSA 160
+ A F + + + + + + DL+
Sbjct: 70 LNGAYATFIVTNYWESCSQEQEVKQGKLLADLAR 103
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 31.3 bits (71), Expect = 0.36
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF--PHLISQDLPTMVA 121
++I ++G + +LA P + L T + K ++ + + D ++
Sbjct: 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSA-TCTDYRDVLQ 61
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIK 147
VDAV +
Sbjct: 62 ------YGVDAVMIHAATDVHSTLAA 81
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 31.2 bits (71), Expect = 0.39
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 60 SEKQVRIGLLGASGYTGAEI-VRLLANHPYFGIKL---MTADRKAGQSIGSVFPHLISQD 115
S K++RIG++G G + + +LA L + R I + +
Sbjct: 2 SLKKLRIGVVGL-GGIAQKAWLPVLAAAS--DWTLQGAWSPTRAKALPICESWRIPYADS 58
Query: 116 LPTMVAVKDADFSNVDAVFCCLPHGTTQEIIK 147
L ++ A + DAVF + +++
Sbjct: 59 LSSLAA-------SCDAVFVHSSTASHFDVVS 83
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic
transcription repressor, acetylation, carbohydrate
metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A
3v2u_A* 3btu_A
Length = 438
Score = 31.1 bits (70), Expect = 0.50
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 13/99 (13%)
Query: 57 TQKSEKQVRIGLLGASGYTG----AEIVRLLANHPYFGIK-LMTADRKAGQSIGSVF--- 108
T + +R+G +G + G +L F I L + + +
Sbjct: 14 TVPNAAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLS 73
Query: 109 PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIK 147
L + + +D + + + E++
Sbjct: 74 NATAFPTLESFASSST-----IDMIVIAIQVASHYEVVM 107
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 30.7 bits (70), Expect = 0.57
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 62 KQVRIGLLGASGYTGAEI-VRLLANHPYFGIKL---MTADRKAGQSIGSVFPHLISQDLP 117
K +++G++G G + + +L + T ++ + I S + + +
Sbjct: 5 KNIKMGMIGL-GSIAQKAYLPILTKSE--RFEFVGAFTPNKVKREKICSDYRIMPFDSIE 61
Query: 118 TMVAVKDADFSNVDAVFCCLPHGTTQEIIK 147
++ D +F T EIIK
Sbjct: 62 SL-------AKKCDCIFLHSSTETHYEIIK 84
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 30.8 bits (69), Expect = 0.66
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 176 QPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217
+ + LQ EA + LT I+ ++V + P IQL
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 181
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 30.4 bits (68), Expect = 0.76
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM 119
S K R+ + GA+G+ G + + L R +S I + L
Sbjct: 8 SPKG-RVLIAGATGFIGQFVATASLDAHRPTYILA---RPGPRSP---SKAKIFKALEDK 60
Query: 120 -VAVKDADFSNVDAV 133
+ + +A+
Sbjct: 61 GAIIVYGLINEQEAM 75
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 30.2 bits (68), Expect = 0.85
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 69 LGASGYTGAEIVRLLANHPYFGIKLMTAD-----RKAGQSIGSVFPHLISQDLPTMVAVK 123
+GA+G GA ++R+ A + ++ + Q+I +V L L V +
Sbjct: 11 VGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNV--TLFQGPLLNNVPLM 67
Query: 124 DADFSNVDAVFCCLPHGTTQEI 145
D F F EI
Sbjct: 68 DTLFEGAHLAFINTTSQAGDEI 89
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 29.8 bits (67), Expect = 0.86
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR------KAGQSIGSVFP-HLISQDLP 117
+ +L +G G LLA G +++ R A S+ F ++ + +
Sbjct: 121 KAVVLAGTGPVGMRSAALLAGE---GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETA 177
Query: 118 TMVAVKDADFSNVDAVFCCLPHG 140
+ +A VF G
Sbjct: 178 DDASRAEA-VKGAHFVFTAGAIG 199
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 29.6 bits (67), Expect = 0.89
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+I ++G++G G +++ L+ Y I + +V + D+
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQYNNV--KAVHFDVDWTPEEMA 58
Query: 125 ADFSNVDAVFCCL 137
+DA+
Sbjct: 59 KQLHGMDAIINVS 71
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 30.0 bits (68), Expect = 0.95
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIK-LMTADRKAGQSIGSVFPHLISQDLPTMV 120
+RI L GA G G +A +P + + + Q + +
Sbjct: 3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVF 61
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEII 146
A D +D + P T ++I
Sbjct: 62 ARDD-----IDGIVIGSPTSTHVDLI 82
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 53 EDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHL 111
G+ + +R+ ++GA+G ++ L N + M + + + +
Sbjct: 11 SSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDI 69
Query: 112 ISQDLPTMVAVKDADFSNVDAVFCCL 137
+ +L + F+++DAV
Sbjct: 70 VVANLEEDFS---HAFASIDAVVFAA 92
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 29.6 bits (67), Expect = 1.1
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIK-LMTADRKAGQSIGSVFPHLISQDLPTMV 120
V + +G G + + + + G + + ++
Sbjct: 4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALL 62
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEII 146
A +D V+ V +P+ E+I
Sbjct: 63 ARED-----VEMVIITVPNDKHAEVI 83
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 29.5 bits (66), Expect = 1.3
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 57 TQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDL 116
+K++R ++G G G ++ L P ++ I P + +L
Sbjct: 3 AMTDDKKIRAAIVGY-GNIGRYALQALREAP--DFEIA--------GIVRRNPAEVPFEL 51
Query: 117 PTMVAVKDAD-FSNVDAVFCCLPHGT-TQEIIKGLPKSLKIVD 157
V D + +VD C P + ++ L K + D
Sbjct: 52 QPFRVVSDIEQLESVDVALVCSPSREVERTALEILKKGICTAD 94
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 29.5 bits (66), Expect = 1.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 176 QPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217
+ LQ E+ + LT I+ + R+V G P I+L
Sbjct: 74 KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIEL 115
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 29.5 bits (66), Expect = 1.6
Identities = 3/37 (8%), Positives = 16/37 (43%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217
+ +A + ++S+++ ++ +P ++
Sbjct: 28 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64
Score = 27.2 bits (60), Expect = 8.4
Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 5/46 (10%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQAN 226
+ A+ L + V G +V L+
Sbjct: 112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ-----KMVALLNKT 152
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 29.6 bits (66), Expect = 1.7
Identities = 5/44 (11%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQ 224
+ +A + ++S+++ ++ +P +V +Q
Sbjct: 164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS-----AIVRTMQ 202
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQAN 226
+ +EA++ L+ I+ + + V + G P LV L+ +
Sbjct: 68 EQILQEALWALSNIASGGNEQIQAVIDAGALP-----ALVQLLSSP 108
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 28.8 bits (65), Expect = 2.0
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHL-ISQDLPTM 119
++++GLLG + L+ P G++L + A + + + +P + + D +
Sbjct: 6 DKIKVGLLGYGYASKTFHAPLIMGTP--GLELAGVSSSDASK-VHADWPAIPVVSDPQML 62
Query: 120 VAVKDADFSNVDAVFCCLPHGT 141
D +D + P+ T
Sbjct: 63 FN--DPS---IDLIVIPTPNDT 79
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 28.7 bits (65), Expect = 2.5
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSI 104
K++RI L+G G G ++R++ R++ SI
Sbjct: 3 KEIRIILMGT-GNVGLNVLRIIDAS---------NRRRSAFSI 35
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 28.3 bits (62), Expect = 2.8
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
R+ LLG +G G + LA G +++ R+ ++ + ++ +K+
Sbjct: 2 RVALLGGTGNLGKGLALRLATL---GHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKN 58
Query: 125 ADFSNVDAVFCCLPHG 140
D + +
Sbjct: 59 EDAAEACDIAVLTIPW 74
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 28.5 bits (64), Expect = 3.1
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHL-ISQDLP 117
S K+ ++ ++G G G+ V L + +++ D A + + L I +
Sbjct: 2 SLKKYQLVIVGY-GGMGSYHVTLASAAD--NLEVHGVFDILAEKREAAAQKGLKIYESYE 58
Query: 118 TMVAVKDADFSNVDAVFCCLPHGT 141
++A D VDAV P+ +
Sbjct: 59 AVLA--DEK---VDAVLIATPNDS 77
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 28.6 bits (64), Expect = 3.1
Identities = 5/44 (11%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQ 224
+ +A + ++S+++ ++ +P +V +Q
Sbjct: 31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS-----AIVRTMQ 69
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein,
metal-binding protein, TAT; 1.70A {Synechocystis SP}
PDB: 2vp1_A*
Length = 346
Score = 28.2 bits (63), Expect = 3.1
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 83 LANHPYFGIKLMT---ADRKAGQSIGSVFPHLISQDLPTMV 120
+AN Y+ + AD++ + + FP+ S + T V
Sbjct: 221 IANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHV 261
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 28.3 bits (64), Expect = 3.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 129 NVDAVFCCLPHGTTQEIIKGLPKSLKIV 156
+VDA+ L +E+I +P+++K +
Sbjct: 44 SVDALLITLNEKCRKEVIDRIPENIKCI 71
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 28.0 bits (63), Expect = 3.5
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHL-ISQDLP 117
S + I L+G L+ + P G+ L A R + + P + +
Sbjct: 4 SNNTINIALIGYGFVGKTFHAPLIRSVP--GLNLAFVASRDE-EKVKRDLPDVTVIASPE 60
Query: 118 TMVAVKDADFSNVDAVFCCLPHGT 141
V D VD V P+ T
Sbjct: 61 AAVQ--HPD---VDLVVIASPNAT 79
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80;
transcription, galactose metabolism, repressor; 2.10A
{Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB:
3e1k_A
Length = 479
Score = 28.1 bits (62), Expect = 3.8
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 13/99 (13%)
Query: 57 TQKSEKQVRIGLLGASGYTG----AEIVRLLANHPYFGIK-LMTADRKAGQSIGSVF--- 108
T S + +R+G +G + + + F I L K+
Sbjct: 33 TVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK 92
Query: 109 PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIK 147
L + KD +D + + E++K
Sbjct: 93 HATGFDSLESFAQYKD-----IDMIVVSVKVPEHYEVVK 126
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 27.6 bits (62), Expect = 4.1
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQ 224
+ +EA++ L+ I+ + + V + G P LV L+
Sbjct: 110 EQILQEALWALSNIASGGNEQIQAVIDAGALP-----ALVQLLS 148
Score = 27.2 bits (61), Expect = 6.3
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQ 224
+ +EA++ L+ I+ + + V + G P LV L+
Sbjct: 68 EQILQEALWALSNIASGGNEQIQAVIDAGALP-----ALVQLLS 106
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 28.0 bits (63), Expect = 4.1
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIK-LMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
+RIG++G G G L + + + + + L A
Sbjct: 3 LRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVREDRLREM--------KEKLGVEKAY 53
Query: 123 KDAD----FSNVDAVFCCLPHGTTQEII 146
KD NVDAV C T E++
Sbjct: 54 KDPHELIEDPNVDAVLVCSSTNTHSELV 81
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 27.7 bits (62), Expect = 4.6
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 16/87 (18%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHLISQDLPT 118
S +++G+LG LL ++ + + + +D P
Sbjct: 2 SLDTIKVGILGYGLSGSVFHGPLLDVLD--EYQISKIMTSRTEE---------VKRDFPD 50
Query: 119 MVAVKDAD----FSNVDAVFCCLPHGT 141
V + + ++ V P G
Sbjct: 51 AEVVHELEEITNDPAIELVIVTTPSGL 77
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo
sapiens} SCOP: c.72.3.1
Length = 313
Score = 27.8 bits (61), Expect = 4.8
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 222 LIQANLIQYRN--IIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRH 271
++ AN+++ R ++I K + +E EI E I +RH
Sbjct: 256 VVVANILESRQSFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTA 307
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 27.1 bits (61), Expect = 5.7
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAV 122
+R+G+LGA G G +VR +A + L D G + + D T V +
Sbjct: 1 MRVGVLGAKGKVGTTMVRAVAAAD--DLTLSAELDA--GDPLS------LLTDGNTEVVI 50
Query: 123 KDADFSNVDAVF----CCLPHGT 141
DF++ D V + +G
Sbjct: 51 ---DFTHPDVVMGNLEFLIDNGI 70
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 27.2 bits (61), Expect = 6.1
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
I L GA+G+ G I + + + + D V+V+
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRN-----------VEKVPDDWRGKVSVRQ 50
Query: 125 ADFSNVDAV 133
D+ N +++
Sbjct: 51 LDYFNQESM 59
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase;
1.70A {Thermus thermophilus}
Length = 332
Score = 27.5 bits (62), Expect = 6.3
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANH 86
+ ++I LLG G G+ L+
Sbjct: 2 EALKIALLGG-GTVGSAFYNLVLER 25
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 27.2 bits (61), Expect = 6.5
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 129 NVDAVFCCLPHGTTQEIIKGLPKSLKIV 156
+ +F T E+I+ L LK +
Sbjct: 71 GAEVLFVTATEAITAEVIRKLQPGLKTI 98
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 27.3 bits (61), Expect = 6.6
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 16/87 (18%)
Query: 60 SEKQVRIGLLGASGYTGAEI-VRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT 118
S + ++ GL G +G ++ +P+F + I L + P
Sbjct: 2 SLEIIKTGLAAF-GMSGQVFHAPFISTNPHFELY----------KIVERSKELSKERYPQ 50
Query: 119 MVAVKDAD----FSNVDAVFCCLPHGT 141
V+ +D + P T
Sbjct: 51 ASIVRSFKELTEDPEIDLIVVNTPDNT 77
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 27.6 bits (62), Expect = 6.8
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANH 86
K + +GLLG G G + +L +
Sbjct: 9 KPIHVGLLGL-GTVGGGTLTVLRRN 32
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 27.3 bits (61), Expect = 6.9
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 59 KSEKQVRIGLLGASGYTGAE-IVRLLANHPYFGIKL---MTADRKAGQSIGSVFP-HLIS 113
+ K +R ++G G G L+ G+KL D + +
Sbjct: 4 TTRKPLRAAIIGL-GRLGERHARHLVNKIQ--GVKLVAACALDSNQLEWAKNELGVETTY 60
Query: 114 QDLPTMVAVKDADFSNVDAVFCCLPHGTTQEII 146
+ M+ ++ +DA+F P E+
Sbjct: 61 TNYKDMIDTEN-----IDAIFIVAPTPFHPEMT 88
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 27.2 bits (60), Expect = 6.9
Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 16/194 (8%)
Query: 1 MSAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVK---ISSIRGSATLPTKSLQVEDGKT 57
M + + + F + A + + + +S +RG + ++ +
Sbjct: 240 MGVGSGAGVLFGTTGGVMEAALRTAYELFTGTPLPRLSLSEVRGMDGIKETNITMVPAPG 299
Query: 58 QKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLP 117
K E+ ++ + LA G + ++ L
Sbjct: 300 SKFEELLKHRAAARAEAAAHGTPGPLAWDGGAGFTSEDGRGGITLRVAVANGLGNAKKLI 359
Query: 118 TMVAVKDADFSNVDAVFC---CL-----PHGTTQEIIKGLPKSLKIVDLSADFRL----R 165
T + +A + V+ + C C+ P T + I + +L +D + R
Sbjct: 360 TKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTDKAITQKRQAALYNLDEKSTLRRSHENP 419
Query: 166 DVSE-YEEWYGQPH 178
+ E Y+ + G+P
Sbjct: 420 SIRELYDTYLGEPL 433
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 27.3 bits (61), Expect = 7.1
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 70 GASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIGSVFPHLISQDLPTMVAVKDADF 127
GA+G G R + G L+ R + Q + + P ++ ++ A
Sbjct: 20 GATGLLGHHAARAIRAA---GHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERA-L 75
Query: 128 SNVDAVF 134
+D V
Sbjct: 76 RGLDGVI 82
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 27.3 bits (60), Expect = 7.4
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217
+Q E+ + LT I+ + + V + G P I L
Sbjct: 115 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL 151
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 26.8 bits (60), Expect = 7.6
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 55 GKTQKSEKQVRIGLLGASGYTGAEIVRLLANHP 87
K ++ G++G SG G EI ++ +
Sbjct: 4 DKIHHHHHHMKYGIVGYSGRMGQEIQKVFSEKG 36
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside
hydrolase, mannosidase, 1- deoxymannojirimycin,
hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae}
PDB: 3qpf_A* 3qsp_A*
Length = 426
Score = 27.2 bits (60), Expect = 8.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 248 AKEA-NLYSEIAEGIYSYGVTRHRHVPEI 275
+A L EI EGI +Y T + +I
Sbjct: 256 IADAKRLQDEIQEGIKNYAYTTNSKGEKI 284
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 27.1 bits (59), Expect = 8.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 58 QKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGI 91
++ K +RIGL+GA G G +IV +A +
Sbjct: 18 AETGKPIRIGLIGA-GEMGTDIVTQVARMQGIEV 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,613,166
Number of extensions: 281314
Number of successful extensions: 732
Number of sequences better than 10.0: 1
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 108
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)